AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068072

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068072.t1 MTR_7g088350 96.471 425 9 1 18 436 35 459 0.0 847
MS.gene068072.t1 MTR_7g088360 57.670 352 140 3 18 367 39 383 3.61e-144 417
MS.gene068072.t1 MTR_1g098390 50.153 327 144 5 18 332 15 334 1.15e-107 325
MS.gene068072.t1 MTR_6g033315 50.610 328 137 6 18 334 30 343 4.12e-105 319
MS.gene068072.t1 MTR_6g038020 51.361 294 133 3 17 304 15 304 5.75e-101 307
MS.gene068072.t1 MTR_6g038020 51.195 293 133 3 18 304 13 301 1.96e-100 306
MS.gene068072.t1 MTR_3g098840 52.055 292 126 4 19 304 32 315 8.73e-98 300
MS.gene068072.t1 MTR_7g083480 48.352 364 167 6 18 372 30 381 1.62e-96 296
MS.gene068072.t1 MTR_7g114080 36.691 139 69 2 146 266 160 297 4.96e-22 97.4
MS.gene068072.t1 MTR_1g094610 30.942 223 106 7 79 286 57 246 1.71e-21 94.0
MS.gene068072.t1 MTR_4g021795 29.435 248 121 10 67 290 46 263 2.55e-21 94.0
MS.gene068072.t1 MTR_7g114080 35.135 148 68 4 146 266 160 306 2.81e-20 92.4
MS.gene068072.t1 MTR_5g023230 35.256 156 93 2 140 288 142 296 1.55e-19 89.4
MS.gene068072.t1 MTR_5g023230 35.256 156 93 2 140 288 162 316 2.11e-19 89.4
MS.gene068072.t1 MTR_4g116160 29.771 262 146 10 76 319 321 562 1.62e-18 88.6
MS.gene068072.t1 MTR_4g116160 29.771 262 146 10 76 319 148 389 2.50e-18 87.4
MS.gene068072.t1 MTR_7g114080 34.965 143 65 4 146 261 160 301 4.30e-18 85.1
MS.gene068072.t1 MTR_1g112830 29.545 220 123 5 76 286 414 610 5.59e-18 86.7
MS.gene068072.t1 MTR_4g116160 30.846 201 112 8 76 265 321 505 1.04e-16 82.4
MS.gene068072.t1 MTR_4g092760 28.216 241 128 9 68 286 303 520 1.57e-16 82.0
MS.gene068072.t1 MTR_4g092760 32.704 159 88 5 146 286 274 431 4.31e-16 80.5
MS.gene068072.t1 MTR_7g114080 54.237 59 27 0 146 204 160 218 1.33e-15 77.8
MS.gene068072.t1 MTR_4g023760 27.315 216 136 6 77 285 60 261 1.35e-14 74.7
MS.gene068072.t1 MTR_7g118050 37.113 97 49 2 94 189 83 168 3.20e-13 68.9
MS.gene068072.t1 MTR_7g118050 37.113 97 49 2 94 189 83 168 3.83e-13 70.5
MS.gene068072.t1 MTR_5g023230 41.270 63 37 0 142 204 164 226 4.12e-13 69.3
MS.gene068072.t1 MTR_4g082560 30.534 131 75 2 147 261 180 310 1.97e-12 69.7
MS.gene068072.t1 MTR_5g042870 30.534 131 75 3 147 261 180 310 1.24e-11 67.0
MS.gene068072.t1 MTR_1g085980 27.068 133 81 2 145 261 155 287 3.21e-11 65.5
MS.gene068072.t1 MTR_4g074600 36.620 71 45 0 139 209 67 137 8.38e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068072.t1 AT3G56930 62.139 346 118 5 18 352 20 363 5.11e-156 450
MS.gene068072.t1 AT5G05070 53.581 377 157 7 18 388 47 411 1.32e-134 393
MS.gene068072.t1 AT3G56930 57.353 340 108 6 18 352 20 327 1.55e-134 394
MS.gene068072.t1 AT2G40990 57.053 319 124 6 18 331 38 348 9.28e-118 350
MS.gene068072.t1 AT3G56920 52.778 324 140 5 18 338 20 333 3.07e-113 336
MS.gene068072.t1 AT3G26935 50.149 335 145 6 19 339 30 356 7.74e-109 328
MS.gene068072.t1 AT5G50020 50.680 294 131 4 18 304 14 300 2.23e-102 311
MS.gene068072.t1 AT4G24630 43.490 361 178 7 18 365 14 361 5.71e-102 310
MS.gene068072.t1 AT5G50020 50.680 294 131 4 18 304 44 330 5.78e-102 311
MS.gene068072.t1 AT5G41060 49.541 327 138 7 19 334 15 325 1.54e-101 308
MS.gene068072.t1 AT5G41060 49.541 327 138 7 19 334 30 340 3.66e-101 308
MS.gene068072.t1 AT3G48760 48.256 344 150 7 2 334 25 351 2.51e-96 297
MS.gene068072.t1 AT5G50020 48.639 294 130 5 18 304 14 293 4.77e-95 292
MS.gene068072.t1 AT5G41060 52.190 274 108 6 72 334 12 273 3.59e-92 282
MS.gene068072.t1 AT5G41060 52.190 274 108 6 72 334 12 273 3.59e-92 282
MS.gene068072.t1 AT3G09320 30.841 214 107 9 93 290 66 254 3.53e-18 84.7
MS.gene068072.t1 AT3G04970 33.333 147 72 2 146 266 73 219 3.58e-18 85.5
MS.gene068072.t1 AT3G51390 35.057 174 98 5 125 289 143 310 1.51e-17 84.0
MS.gene068072.t1 AT3G51390 35.057 174 98 5 125 289 138 305 1.52e-17 84.0
MS.gene068072.t1 AT3G04970 32.653 147 73 2 146 266 160 306 3.29e-17 83.6
MS.gene068072.t1 AT2G14255 32.911 158 79 6 146 281 363 515 4.88e-17 83.6
MS.gene068072.t1 AT5G04270 31.293 147 92 4 123 263 68 211 7.64e-17 80.9
MS.gene068072.t1 AT3G04970 55.932 59 26 0 146 204 160 218 2.15e-16 80.1
MS.gene068072.t1 AT5G20350 28.632 234 125 8 75 286 315 528 1.83e-15 79.0
MS.gene068072.t1 AT4G22750 32.450 151 92 3 145 288 115 262 1.12e-13 72.0
MS.gene068072.t1 AT3G60800 26.977 215 127 6 77 272 62 265 2.16e-13 71.2
MS.gene068072.t1 AT1G69420 30.534 131 75 2 147 261 164 294 6.06e-13 71.2
MS.gene068072.t1 AT1G69420 30.534 131 75 2 147 261 164 294 6.06e-13 71.2
MS.gene068072.t1 AT3G18620 40.789 76 38 2 139 207 141 216 1.22e-11 66.2
MS.gene068072.t1 AT4G00840 45.652 46 25 0 144 189 109 154 5.42e-11 62.8
MS.gene068072.t1 AT4G00840 48.837 43 22 0 147 189 112 154 9.63e-11 62.8

Find 99 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTCCTCCTCTTGACTTC+TGG 0.152547 7.3:+21042424 MS.gene068072:CDS
CCTTCTATGGAGTGGATTAA+TGG 0.203993 7.3:+21042517 MS.gene068072:CDS
GGTACTGGTGCCACTTAAAT+TGG 0.204778 7.3:+21041868 MS.gene068072:CDS
GGGTTCAATTCTTACTATTC+TGG 0.211772 7.3:+21042247 MS.gene068072:CDS
TATTCCTCCTCTTGACTTCT+GGG 0.268341 7.3:+21042425 MS.gene068072:CDS
TAATATACCTACTCCTTCTA+TGG 0.276316 7.3:+21042504 MS.gene068072:CDS
CTTAGTGATCCCTTATTGTA+TGG 0.289210 7.3:-21043463 None:intergenic
TTTATTTCATCAACAGTAAC+AGG 0.289773 7.3:-21043895 None:intergenic
TTCATTGCTGTCTGGTTTGT+TGG 0.298614 7.3:+21043227 MS.gene068072:CDS
CTATCTCATTTGTACAAATC+AGG 0.303428 7.3:+21043271 MS.gene068072:CDS
GTTACTGTTGATGAAATAAA+TGG 0.304437 7.3:+21043898 MS.gene068072:CDS
TCAAAATTTCGCAGAAGTTC+GGG 0.308835 7.3:-21043676 None:intergenic
AAAAGGGAACCCATACAATA+AGG 0.310666 7.3:+21043453 MS.gene068072:CDS
ATTCATTGAAGCAGGAATAC+TGG 0.316448 7.3:-21043509 None:intergenic
AAGGGATCACTAAGAAATAT+TGG 0.322000 7.3:+21043472 MS.gene068072:CDS
GGAGAAAATTGATGTTGAAA+TGG 0.325187 7.3:+21043618 MS.gene068072:CDS
ATCAAAATTTCGCAGAAGTT+CGG 0.336374 7.3:-21043677 None:intergenic
TTTCGCAGAAGTTCGGGAAT+TGG 0.339620 7.3:-21043670 None:intergenic
AAAATCCCGTCCGCCATATT+CGG 0.340021 7.3:-21043586 None:intergenic
CTGTGACTTCGAATCCAGTA+TGG 0.341832 7.3:-21043858 None:intergenic
AATCTTCGATTGCGATACTA+TGG 0.363590 7.3:-21043810 None:intergenic
CAATTGCAGGTGCAGCAATT+AGG 0.368777 7.3:-21042139 None:intergenic
TTGACTTCTGGGAGAGATCC+TGG 0.384915 7.3:+21042436 MS.gene068072:CDS
GAGAAAATTGATGTTGAAAT+GGG 0.385547 7.3:+21043619 MS.gene068072:CDS
CAGAAGTCAAGAGGAGGAAT+AGG 0.388682 7.3:-21042423 None:intergenic
AAAGACATATAGGCACAAAA+TGG 0.393707 7.3:-21043117 None:intergenic
ATTTCTCTGTGGTGGGAGAC+TGG 0.395795 7.3:+21042076 MS.gene068072:CDS
GAATTTCTCGGGATAATTCC+AGG 0.395988 7.3:-21042454 None:intergenic
TTGCTGTCTGGTTTGTTGGT+GGG 0.396543 7.3:+21043231 MS.gene068072:CDS
TATACTGCTTCATTGCTGTC+TGG 0.401701 7.3:+21043219 MS.gene068072:CDS
TCCGTTTGTAGCTCCCATAC+TGG 0.403795 7.3:+21043844 MS.gene068072:CDS
ACATGCTGCAGCGAAATTAT+CGG 0.405560 7.3:+21043066 MS.gene068072:intron
CCATTAATCCACTCCATAGA+AGG 0.409197 7.3:-21042517 None:intergenic
TTTCCGATCGTTTGTACAGC+AGG 0.411571 7.3:+21043534 MS.gene068072:CDS
TGGTGTCCTGTAGTGATTGT+GGG 0.411788 7.3:+21042227 MS.gene068072:CDS
AGGATGAACATACGATGGTT+GGG 0.421229 7.3:+21043554 MS.gene068072:CDS
AAAGGGAACCCATACAATAA+GGG 0.423938 7.3:+21043454 MS.gene068072:CDS
AAGCATGAGAAGGCCAATAA+TGG 0.431532 7.3:+21042191 MS.gene068072:CDS
CATCAACAGTAACAGGCCTT+TGG 0.433305 7.3:-21043888 None:intergenic
TTGATGTTGAAATGGGATCT+AGG 0.436013 7.3:+21043626 MS.gene068072:CDS
TTAACACAAAATGCAATTGC+AGG 0.437269 7.3:-21042152 None:intergenic
CCCTGGGTTGGCCAGTGCAT+TGG 0.444013 7.3:+21042700 MS.gene068072:CDS
GAAAAGTGTTCCAATTTAAG+TGG 0.446824 7.3:-21041878 None:intergenic
TTAGTGATCCCTTATTGTAT+GGG 0.448014 7.3:-21043462 None:intergenic
TTGTACAAATGAGATAGAAA+TGG 0.448341 7.3:-21043265 None:intergenic
ATTCAGAGATTTCTCTGTGG+TGG 0.449321 7.3:+21042068 MS.gene068072:intron
AAGAGAACACAAAGACATAT+AGG 0.450100 7.3:-21043127 None:intergenic
TCTGGAGGTGTTGAATTTCT+CGG 0.454032 7.3:-21042466 None:intergenic
TCCAATGCACTGGCCAACCC+AGG 0.454039 7.3:-21042701 None:intergenic
CGGAAATTATTCATTGAAGC+AGG 0.460924 7.3:-21043517 None:intergenic
TCATGGAGCTGTTGAGGTAC+TGG 0.461386 7.3:+21041853 None:intergenic
CTGGAGGTGTTGAATTTCTC+GGG 0.461477 7.3:-21042465 None:intergenic
GATTTGATCATCACTGCCCC+TGG 0.464384 7.3:+21042683 MS.gene068072:CDS
ATTGCTGTCTGGTTTGTTGG+TGG 0.467541 7.3:+21043230 MS.gene068072:CDS
AAACTGTAGCAACAGATGTT+CGG 0.467884 7.3:-21043780 None:intergenic
GGCAGTGATGATCAAATCTC+TGG 0.471201 7.3:-21042678 None:intergenic
ACATGAGTCATTTCTGTCAT+CGG 0.488603 7.3:-21043932 None:intergenic
TTCAGAGATTTCTCTGTGGT+GGG 0.489294 7.3:+21042069 MS.gene068072:intron
ACTAAAGATGTACTTGTGAA+TGG 0.496836 7.3:+21042568 MS.gene068072:CDS
GACTTACTCTTCCAATGCAC+TGG 0.501355 7.3:-21042711 None:intergenic
GATCATCACTGCCCCTGGGT+TGG 0.502356 7.3:+21042688 MS.gene068072:CDS
CAGGATGAACATACGATGGT+TGG 0.506939 7.3:+21043553 MS.gene068072:CDS
TTAAACGCGTCATCATAGTC+TGG 0.516699 7.3:-21042484 None:intergenic
TCCAGTATGGGAGCTACAAA+CGG 0.522058 7.3:-21043845 None:intergenic
TCTTCCTCAACACTGTAGAA+TGG 0.522397 7.3:-21043742 None:intergenic
AGACAACTTACGAGAACTTC+CGG 0.531741 7.3:+21043416 MS.gene068072:intron
ATTGAACCCACAATCACTAC+AGG 0.531854 7.3:-21042233 None:intergenic
GGATGAACATACGATGGTTG+GGG 0.536653 7.3:+21043555 MS.gene068072:CDS
TTGGTGTCCTGTAGTGATTG+TGG 0.545254 7.3:+21042226 MS.gene068072:CDS
CCAATGCACTGGCCAACCCA+GGG 0.545845 7.3:-21042700 None:intergenic
ACAAGTACATCTTTAGTTCG+AGG 0.546361 7.3:-21042562 None:intergenic
TGACTCCGAATATGGCGGAC+GGG 0.567397 7.3:+21043581 MS.gene068072:CDS
TACCTACTCCTTCTATGGAG+TGG 0.568209 7.3:+21042509 MS.gene068072:CDS
AGAAACAAGGAAGCTACGTC+AGG 0.568313 7.3:-21042107 None:intergenic
TTGATATCATGGAGCTGTTG+AGG 0.576468 7.3:+21041847 None:intergenic
ATTTGATCATCACTGCCCCT+GGG 0.579993 7.3:+21042684 MS.gene068072:CDS
TGATCCATTCTACAGTGTTG+AGG 0.585981 7.3:+21043738 MS.gene068072:CDS
AATCTCACATGATTATGTAT+CGG 0.591027 7.3:+21043184 MS.gene068072:CDS
CATCCTGCTGTACAAACGAT+CGG 0.600230 7.3:-21043537 None:intergenic
TGTGACTTCGAATCCAGTAT+GGG 0.601594 7.3:-21043857 None:intergenic
TCTAGGCGTGCGGACGACGG+TGG 0.612392 7.3:+21043643 MS.gene068072:CDS
GGATCTAGGCGTGCGGACGA+CGG 0.613270 7.3:+21043640 MS.gene068072:CDS
GATCTCTCCCAGAAGTCAAG+AGG 0.619886 7.3:-21042432 None:intergenic
TCTTAAAGCAAAGCATGAGA+AGG 0.627068 7.3:+21042181 MS.gene068072:CDS
TTGACTCCGAATATGGCGGA+CGG 0.628645 7.3:+21043580 MS.gene068072:CDS
CTCTCCCAGAAGTCAAGAGG+AGG 0.632631 7.3:-21042429 None:intergenic
TGTACTTGTGAATGGTCATA+CGG 0.637970 7.3:+21042576 MS.gene068072:CDS
TTCATTCAGAGATTTCTCTG+TGG 0.644118 7.3:+21042065 MS.gene068072:intron
GGGTTTGACTCCGAATATGG+CGG 0.656520 7.3:+21043576 MS.gene068072:CDS
GATGAACATACGATGGTTGG+GGG 0.658611 7.3:+21043556 MS.gene068072:CDS
TAGGAATGTTGTAAGAAACA+AGG 0.661120 7.3:-21042120 None:intergenic
AAGTCACAGAATCTGACCAA+AGG 0.663763 7.3:+21043872 MS.gene068072:CDS
ATCCACTCCATAGAAGGAGT+AGG 0.669098 7.3:-21042511 None:intergenic
CAATGCACTGGCCAACCCAG+GGG 0.671362 7.3:-21042699 None:intergenic
AACGCGTCATCATAGTCTGG+AGG 0.679478 7.3:-21042481 None:intergenic
TGAAATGGGATCTAGGCGTG+CGG 0.733455 7.3:+21043633 MS.gene068072:CDS
ACAGCAGGATGAACATACGA+TGG 0.764138 7.3:+21043549 MS.gene068072:CDS
GAACAATGAGAAGTACGAGG+CGG 0.774033 7.3:-21042637 None:intergenic
ATAGAACAATGAGAAGTACG+AGG 0.782052 7.3:-21042640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAAAACTGATATATA+AGG + chr7.3:21042380-21042399 MS.gene068072:intron 15.0%
!!! AAGAATATTTTTATGCTATT+TGG + chr7.3:21042816-21042835 MS.gene068072:intron 15.0%
!!! AGAATATTTTTATGCTATTT+GGG + chr7.3:21042817-21042836 MS.gene068072:intron 15.0%
!! ACGTAAAAAAAACTTTCAAA+TGG - chr7.3:21041975-21041994 None:intergenic 20.0%
!! GGTATCAATATGATAAAAAA+GGG + chr7.3:21043437-21043456 MS.gene068072:CDS 20.0%
!!! CTTTTTTATCATATTGATAC+CGG - chr7.3:21043438-21043457 None:intergenic 20.0%
!!! TTTTGATTTTGATAGTTTTG+AGG + chr7.3:21043693-21043712 MS.gene068072:CDS 20.0%
!!! TTTTTTTTACGTTGTTGTAT+TGG + chr7.3:21041983-21042002 MS.gene068072:intron 20.0%
! AAAAAGATGATCACCATTAT+TGG - chr7.3:21042207-21042226 None:intergenic 25.0%
! AAAATGAAATGGAGAAGATA+TGG - chr7.3:21043023-21043042 None:intergenic 25.0%
! AAATGTCTTCTATGTTTGTT+TGG + chr7.3:21042944-21042963 MS.gene068072:intron 25.0%
! AATCTCACATGATTATGTAT+CGG + chr7.3:21043184-21043203 MS.gene068072:CDS 25.0%
! AATGAAGGGAACAAAAAAAA+AGG - chr7.3:21042051-21042070 None:intergenic 25.0%
! AGTTCTTGTAGAAAATGAAA+TGG - chr7.3:21043034-21043053 None:intergenic 25.0%
! CGGTATCAATATGATAAAAA+AGG + chr7.3:21043436-21043455 MS.gene068072:CDS 25.0%
! GAGAAAATTGATGTTGAAAT+GGG + chr7.3:21043619-21043638 MS.gene068072:CDS 25.0%
! TTGTACAAATGAGATAGAAA+TGG - chr7.3:21043268-21043287 None:intergenic 25.0%
! TTTATTTCATCAACAGTAAC+AGG - chr7.3:21043898-21043917 None:intergenic 25.0%
!! GTTACTGTTGATGAAATAAA+TGG + chr7.3:21043898-21043917 MS.gene068072:CDS 25.0%
!!! ATAATGGTGATCATCTTTTT+TGG + chr7.3:21042207-21042226 MS.gene068072:CDS 25.0%
AAAGACATATAGGCACAAAA+TGG - chr7.3:21043120-21043139 None:intergenic 30.0%
AAGAGAACACAAAGACATAT+AGG - chr7.3:21043130-21043149 None:intergenic 30.0%
AAGGGATCACTAAGAAATAT+TGG + chr7.3:21043472-21043491 MS.gene068072:CDS 30.0%
ACTAAAGATGTACTTGTGAA+TGG + chr7.3:21042568-21042587 MS.gene068072:CDS 30.0%
ATCAAAATTTCGCAGAAGTT+CGG - chr7.3:21043680-21043699 None:intergenic 30.0%
CAATAAGACAAAACATGTGA+TGG - chr7.3:21043360-21043379 None:intergenic 30.0%
CTATCTCATTTGTACAAATC+AGG + chr7.3:21043271-21043290 MS.gene068072:CDS 30.0%
GGAGAAAATTGATGTTGAAA+TGG + chr7.3:21043618-21043637 MS.gene068072:CDS 30.0%
GTAAAATGAGAAACTGTTGA+AGG - chr7.3:21042279-21042298 None:intergenic 30.0%
TAATATACCTACTCCTTCTA+TGG + chr7.3:21042504-21042523 MS.gene068072:CDS 30.0%
TAGAAACAGAGATTTGATCA+TGG + chr7.3:21042763-21042782 MS.gene068072:intron 30.0%
TAGGAATGTTGTAAGAAACA+AGG - chr7.3:21042123-21042142 None:intergenic 30.0%
TTAACACAAAATGCAATTGC+AGG - chr7.3:21042155-21042174 None:intergenic 30.0%
TTAGTGATCCCTTATTGTAT+GGG - chr7.3:21043465-21043484 None:intergenic 30.0%
TTTACGTTGTTGTATTGGAT+TGG + chr7.3:21041988-21042007 MS.gene068072:intron 30.0%
! AAATTGGAACACTTTTCTTG+TGG + chr7.3:21041884-21041903 MS.gene068072:CDS 30.0%
! ATCTTTCGCAGAAAGATTTT+TGG + chr7.3:21043156-21043175 MS.gene068072:CDS 30.0%
! CATCACATGTTTTGTCTTAT+TGG + chr7.3:21043358-21043377 MS.gene068072:intron 30.0%
! CTTTTTGTTGCATTAACACA+TGG - chr7.3:21042799-21042818 None:intergenic 30.0%
! TCAACATCAATTTTCTCCTT+TGG - chr7.3:21043616-21043635 None:intergenic 30.0%
! TCTTTCGCAGAAAGATTTTT+GGG + chr7.3:21043157-21043176 MS.gene068072:CDS 30.0%
!! GAAAAGTGTTCCAATTTAAG+TGG - chr7.3:21041881-21041900 None:intergenic 30.0%
!!! TTCGAGGTAGTTTTAAATGA+GGG - chr7.3:21042549-21042568 None:intergenic 30.0%
!!! TTTGTTTGGCTTGGTTTTAT+TGG + chr7.3:21042958-21042977 MS.gene068072:intron 30.0%
AAAAGGGAACCCATACAATA+AGG + chr7.3:21043453-21043472 MS.gene068072:CDS 35.0%
AAACTGTAGCAACAGATGTT+CGG - chr7.3:21043783-21043802 None:intergenic 35.0%
AAAGGGAACCCATACAATAA+GGG + chr7.3:21043454-21043473 MS.gene068072:CDS 35.0%
AATCTTCGATTGCGATACTA+TGG - chr7.3:21043813-21043832 None:intergenic 35.0%
AATTACCAACTTCAGTCAAG+AGG - chr7.3:21042865-21042884 None:intergenic 35.0%
ACAGAGAAATCTCTGAATGA+AGG - chr7.3:21042066-21042085 None:intergenic 35.0%
ACATGAGTCATTTCTGTCAT+CGG - chr7.3:21043935-21043954 None:intergenic 35.0%
ATTCATTGAAGCAGGAATAC+TGG - chr7.3:21043512-21043531 None:intergenic 35.0%
ATTTACCTCTTGACTGAAGT+TGG + chr7.3:21042857-21042876 MS.gene068072:intron 35.0%
CAGAGAAATCTCTGAATGAA+GGG - chr7.3:21042065-21042084 None:intergenic 35.0%
CGGAAATTATTCATTGAAGC+AGG - chr7.3:21043520-21043539 None:intergenic 35.0%
CTTAGTGATCCCTTATTGTA+TGG - chr7.3:21043466-21043485 None:intergenic 35.0%
GGGTTCAATTCTTACTATTC+TGG + chr7.3:21042247-21042266 MS.gene068072:CDS 35.0%
TCAAAATTTCGCAGAAGTTC+GGG - chr7.3:21043679-21043698 None:intergenic 35.0%
TCTTAAAGCAAAGCATGAGA+AGG + chr7.3:21042181-21042200 MS.gene068072:CDS 35.0%
TCTTCTATGTTTGTTTGGCT+TGG + chr7.3:21042949-21042968 MS.gene068072:intron 35.0%
TGTACTTGTGAATGGTCATA+CGG + chr7.3:21042576-21042595 MS.gene068072:CDS 35.0%
TTCATTCAGAGATTTCTCTG+TGG + chr7.3:21042065-21042084 MS.gene068072:intron 35.0%
TTGATGTTGAAATGGGATCT+AGG + chr7.3:21043626-21043645 MS.gene068072:CDS 35.0%
! ACAAGTACATCTTTAGTTCG+AGG - chr7.3:21042565-21042584 None:intergenic 35.0%
! ATAACTTTTTGTCATGGCTG+TGG + chr7.3:21041927-21041946 MS.gene068072:intron 35.0%
! ATAGAACAATGAGAAGTACG+AGG - chr7.3:21042643-21042662 None:intergenic 35.0%
! CGACGAATAACTTTTTGTCA+TGG + chr7.3:21041921-21041940 MS.gene068072:intron 35.0%
!!! GTTCGAGGTAGTTTTAAATG+AGG - chr7.3:21042550-21042569 None:intergenic 35.0%
!!! TCGAGGTAGTTTTAAATGAG+GGG - chr7.3:21042548-21042567 None:intergenic 35.0%
!!! TTTTGATAGTTTTGAGGACG+AGG + chr7.3:21043699-21043718 MS.gene068072:CDS 35.0%
AAGCATGAGAAGGCCAATAA+TGG + chr7.3:21042191-21042210 MS.gene068072:CDS 40.0%
AAGTCACAGAATCTGACCAA+AGG + chr7.3:21043872-21043891 MS.gene068072:CDS 40.0%
ACATGCTGCAGCGAAATTAT+CGG + chr7.3:21043066-21043085 MS.gene068072:intron 40.0%
AGACAACTTACGAGAACTTC+CGG + chr7.3:21043416-21043435 MS.gene068072:intron 40.0%
AGGATGAACATACGATGGTT+GGG + chr7.3:21043554-21043573 MS.gene068072:CDS 40.0%
ATTCAGAGATTTCTCTGTGG+TGG + chr7.3:21042068-21042087 MS.gene068072:intron 40.0%
ATTGAACCCACAATCACTAC+AGG - chr7.3:21042236-21042255 None:intergenic 40.0%
CCATTAATCCACTCCATAGA+AGG - chr7.3:21042520-21042539 None:intergenic 40.0%
GAATTTCTCGGGATAATTCC+AGG - chr7.3:21042457-21042476 None:intergenic 40.0%
TATAAGGCAAACTCATGTGC+AGG + chr7.3:21042396-21042415 MS.gene068072:intron 40.0%
TATACTGCTTCATTGCTGTC+TGG + chr7.3:21043219-21043238 MS.gene068072:CDS 40.0%
TATTCCTCCTCTTGACTTCT+GGG + chr7.3:21042425-21042444 MS.gene068072:CDS 40.0%
TCTTCCTCAACACTGTAGAA+TGG - chr7.3:21043745-21043764 None:intergenic 40.0%
TGATCCATTCTACAGTGTTG+AGG + chr7.3:21043738-21043757 MS.gene068072:CDS 40.0%
TGCTCTAATCGTAAGCTACA+AGG - chr7.3:21042347-21042366 None:intergenic 40.0%
TGTGACTTCGAATCCAGTAT+GGG - chr7.3:21043860-21043879 None:intergenic 40.0%
TTAAACGCGTCATCATAGTC+TGG - chr7.3:21042487-21042506 None:intergenic 40.0%
TTCAGAGATTTCTCTGTGGT+GGG + chr7.3:21042069-21042088 MS.gene068072:intron 40.0%
! TTCATTGCTGTCTGGTTTGT+TGG + chr7.3:21043227-21043246 MS.gene068072:CDS 40.0%
!! CCTTCTATGGAGTGGATTAA+TGG + chr7.3:21042517-21042536 MS.gene068072:CDS 40.0%
!! TCGCAGAAAGATTTTTGGGA+TGG + chr7.3:21043161-21043180 MS.gene068072:CDS 40.0%
!! TCTGGAGGTGTTGAATTTCT+CGG - chr7.3:21042469-21042488 None:intergenic 40.0%
!! TGCATAGCTTCGACTAGTTT+CGG - chr7.3:21042301-21042320 None:intergenic 40.0%
AAAATCCCGTCCGCCATATT+CGG - chr7.3:21043589-21043608 None:intergenic 45.0%
ACAGCAGGATGAACATACGA+TGG + chr7.3:21043549-21043568 MS.gene068072:CDS 45.0%
AGAAACAAGGAAGCTACGTC+AGG - chr7.3:21042110-21042129 None:intergenic 45.0%
ATCCACTCCATAGAAGGAGT+AGG - chr7.3:21042514-21042533 None:intergenic 45.0%
ATTTGATCATCACTGCCCCT+GGG + chr7.3:21042684-21042703 MS.gene068072:CDS 45.0%
CAATTGCAGGTGCAGCAATT+AGG - chr7.3:21042142-21042161 None:intergenic 45.0%
CAGAAGTCAAGAGGAGGAAT+AGG - chr7.3:21042426-21042445 None:intergenic 45.0%
CAGGATGAACATACGATGGT+TGG + chr7.3:21043553-21043572 MS.gene068072:CDS 45.0%
CATCAACAGTAACAGGCCTT+TGG - chr7.3:21043891-21043910 None:intergenic 45.0%
CATCCTGCTGTACAAACGAT+CGG - chr7.3:21043540-21043559 None:intergenic 45.0%
CTATTCCTCCTCTTGACTTC+TGG + chr7.3:21042424-21042443 MS.gene068072:CDS 45.0%
CTGTGACTTCGAATCCAGTA+TGG - chr7.3:21043861-21043880 None:intergenic 45.0%
GACTTACTCTTCCAATGCAC+TGG - chr7.3:21042714-21042733 None:intergenic 45.0%
GATGAACATACGATGGTTGG+GGG + chr7.3:21043556-21043575 MS.gene068072:CDS 45.0%
GGAAGTTCTCGTAAGTTGTC+TGG - chr7.3:21043417-21043436 None:intergenic 45.0%
GGATGAACATACGATGGTTG+GGG + chr7.3:21043555-21043574 MS.gene068072:CDS 45.0%
GGCAGTGATGATCAAATCTC+TGG - chr7.3:21042681-21042700 None:intergenic 45.0%
TACCTACTCCTTCTATGGAG+TGG + chr7.3:21042509-21042528 MS.gene068072:CDS 45.0%
TCCAGTATGGGAGCTACAAA+CGG - chr7.3:21043848-21043867 None:intergenic 45.0%
TGGTGTCCTGTAGTGATTGT+GGG + chr7.3:21042227-21042246 MS.gene068072:CDS 45.0%
TTTCCGATCGTTTGTACAGC+AGG + chr7.3:21043534-21043553 MS.gene068072:CDS 45.0%
TTTCGCAGAAGTTCGGGAAT+TGG - chr7.3:21043673-21043692 None:intergenic 45.0%
! GAACAATGAGAAGTACGAGG+CGG - chr7.3:21042640-21042659 None:intergenic 45.0%
! TGTCATGGCTGTGGACTTTT+AGG + chr7.3:21041936-21041955 MS.gene068072:intron 45.0%
! TTGGTGTCCTGTAGTGATTG+TGG + chr7.3:21042226-21042245 MS.gene068072:CDS 45.0%
!! ATTGCTGTCTGGTTTGTTGG+TGG + chr7.3:21043230-21043249 MS.gene068072:CDS 45.0%
!! CTGGAGGTGTTGAATTTCTC+GGG - chr7.3:21042468-21042487 None:intergenic 45.0%
!! GGTACTGGTGCCACTTAAAT+TGG + chr7.3:21041868-21041887 MS.gene068072:CDS 45.0%
!! TTGCTGTCTGGTTTGTTGGT+GGG + chr7.3:21043231-21043250 MS.gene068072:CDS 45.0%
!!! GATAGTTTTGAGGACGAGGA+GGG + chr7.3:21043703-21043722 MS.gene068072:CDS 45.0%
!!! TGATAGTTTTGAGGACGAGG+AGG + chr7.3:21043702-21043721 MS.gene068072:CDS 45.0%
AACGCGTCATCATAGTCTGG+AGG - chr7.3:21042484-21042503 None:intergenic 50.0%
GATCTCTCCCAGAAGTCAAG+AGG - chr7.3:21042435-21042454 None:intergenic 50.0%
GATTTGATCATCACTGCCCC+TGG + chr7.3:21042683-21042702 MS.gene068072:CDS 50.0%
GGGTTTGACTCCGAATATGG+CGG + chr7.3:21043576-21043595 MS.gene068072:CDS 50.0%
TCCGTTTGTAGCTCCCATAC+TGG + chr7.3:21043844-21043863 MS.gene068072:CDS 50.0%
TGAAATGGGATCTAGGCGTG+CGG + chr7.3:21043633-21043652 MS.gene068072:CDS 50.0%
TGGGGGTTTGACTCCGAATA+TGG + chr7.3:21043573-21043592 MS.gene068072:CDS 50.0%
! ATTTCTCTGTGGTGGGAGAC+TGG + chr7.3:21042076-21042095 MS.gene068072:CDS 50.0%
! TTGACTCCGAATATGGCGGA+CGG + chr7.3:21043580-21043599 MS.gene068072:CDS 50.0%
! TTGACTTCTGGGAGAGATCC+TGG + chr7.3:21042436-21042455 MS.gene068072:CDS 50.0%
!!! GGACGGGATTTTGACTCCAA+AGG + chr7.3:21043597-21043616 MS.gene068072:CDS 50.0%
!!! TGTGGTGGGAGACTGGTTTT+TGG + chr7.3:21042083-21042102 MS.gene068072:CDS 50.0%
CTCTCCCAGAAGTCAAGAGG+AGG - chr7.3:21042432-21042451 None:intergenic 55.0%
!! TGACTCCGAATATGGCGGAC+GGG + chr7.3:21043581-21043600 MS.gene068072:CDS 55.0%
GATCATCACTGCCCCTGGGT+TGG + chr7.3:21042688-21042707 MS.gene068072:CDS 60.0%
! CAATGCACTGGCCAACCCAG+GGG - chr7.3:21042702-21042721 None:intergenic 60.0%
! CCAATGCACTGGCCAACCCA+GGG - chr7.3:21042703-21042722 None:intergenic 60.0%
! TCCAATGCACTGGCCAACCC+AGG - chr7.3:21042704-21042723 None:intergenic 60.0%
GGATCTAGGCGTGCGGACGA+CGG + chr7.3:21043640-21043659 MS.gene068072:CDS 65.0%
!! CCCTGGGTTGGCCAGTGCAT+TGG + chr7.3:21042700-21042719 MS.gene068072:CDS 65.0%
TCTAGGCGTGCGGACGACGG+TGG + chr7.3:21043643-21043662 MS.gene068072:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 21041855 21043957 21041855 ID=MS.gene068072
chr7.3 mRNA 21041855 21043957 21041855 ID=MS.gene068072.t1;Parent=MS.gene068072
chr7.3 exon 21041855 21041905 21041855 ID=MS.gene068072.t1.exon1;Parent=MS.gene068072.t1
chr7.3 CDS 21041855 21041905 21041855 ID=cds.MS.gene068072.t1;Parent=MS.gene068072.t1
chr7.3 exon 21042074 21042268 21042074 ID=MS.gene068072.t1.exon2;Parent=MS.gene068072.t1
chr7.3 CDS 21042074 21042268 21042074 ID=cds.MS.gene068072.t1;Parent=MS.gene068072.t1
chr7.3 exon 21042418 21042726 21042418 ID=MS.gene068072.t1.exon3;Parent=MS.gene068072.t1
chr7.3 CDS 21042418 21042726 21042418 ID=cds.MS.gene068072.t1;Parent=MS.gene068072.t1
chr7.3 exon 21043077 21043292 21043077 ID=MS.gene068072.t1.exon4;Parent=MS.gene068072.t1
chr7.3 CDS 21043077 21043292 21043077 ID=cds.MS.gene068072.t1;Parent=MS.gene068072.t1
chr7.3 exon 21043418 21043957 21043418 ID=MS.gene068072.t1.exon5;Parent=MS.gene068072.t1
chr7.3 CDS 21043418 21043957 21043418 ID=cds.MS.gene068072.t1;Parent=MS.gene068072.t1
Gene Sequence

>MS.gene068072

ATGGAGCTGTTGAGGTACTGGTGCCACTTAAATTGGAACACTTTTCTTGTGGTCAATTTTTTATTTCGACGAATAACTTTTTGTCATGGCTGTGGACTTTTAGGTTTTATATAGTTACCATTTGAAAGTTTTTTTTACGTTGTTGTATTGGATTGGAGATAAGTGAATTTCTGTATATTATTCTTTATTAATTCCTTTTTTTTTGTTCCCTTCATTCAGAGATTTCTCTGTGGTGGGAGACTGGTTTTTGGTCCTGACGTAGCTTCCTTGTTTCTTACAACATTCCTAATTGCTGCACCTGCAATTGCATTTTGTGTTAAGATGTATCTTAAAGCAAAGCATGAGAAGGCCAATAATGGTGATCATCTTTTTTGGTGTCCTGTAGTGATTGTGGGTTCAATTCTTACTATTCTGGTAAACACCTTCAACAGTTTCTCATTTTACCGAAACTAGTCGAAGCTATGCATTATCTTTTTCATTATATAATTTCCTTGTAGCTTACGATTAGAGCACGTTTCTCTTTTGAAAGTTAAAACTGATATATAAGGCAAACTCATGTGCAGGATTTCCTATTCCTCCTCTTGACTTCTGGGAGAGATCCTGGAATTATCCCGAGAAATTCAACACCTCCAGACTATGATGACGCGTTTAATATACCTACTCCTTCTATGGAGTGGATTAATGGTTCGACCCCTCATTTAAAACTACCTCGAACTAAAGATGTACTTGTGAATGGTCATACGGTGAAAGTGAAGTTCTGTGATACATGCTTGCTATATCGACCGCCTCGTACTTCTCATTGTTCTATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCCTGGGTTGGCCAGTGCATTGGAAGAGTAAGTCAACTTTACTGCAAAAAAAAAAGTGAAGTTTAGAAACAGAGATTTGATCATGGAGATAGTATTCCATGTGTTAATGCAACAAAAAGAATATTTTTATGCTATTTGGGAATGAGTTACGACTACAATTTACCTCTTGACTGAAGTTGGTAATTTTTATTGCATTGCAGTGACAAAATTACTGCAATGTATAATATATTTATTAACTTCTTTTAAATGTCTTCTATGTTTGTTTGGCTTGGTTTTATTGGTCAAAAACAGAAATGTGAATTATTTGTTTTTTGTTGTGTCCATATCTTCTCCATTTCATTTTCTACAAGAACTAACAGTTGTCTTACATGCTGCAGCGAAATTATCGGTACTTCTTCATGTTTATTTCAACATCAACCATTTTGTGCCTATATGTCTTTGTGTTCTCTTGTATCAATCTTTCGCAGAAAGATTTTTGGGATGGAATCTCACATGATTATGTATCGGATTTTCTCATTATATACTGCTTCATTGCTGTCTGGTTTGTTGGTGGGCTCACAGCTTTCCATTTCTATCTCATTTGTACAAATCAGGTGACTATTTTTACTTCTCAAAATGCAAAAAATATCTTAATCATTTCAGATTCTTTATTCATCTCCATCACATGTTTTGTCTTATTGGTTCAAACTTACAGTATTTTACTTCTGTTATTGTCCAGACAACTTACGAGAACTTCCGGTATCAATATGATAAAAAAGGGAACCCATACAATAAGGGATCACTAAGAAATATTGGAGAAACACTTTGTTCCAGTATTCCTGCTTCAATGAATAATTTCCGATCGTTTGTACAGCAGGATGAACATACGATGGTTGGGGGTTTGACTCCGAATATGGCGGACGGGATTTTGACTCCAAAGGAGAAAATTGATGTTGAAATGGGATCTAGGCGTGCGGACGACGGTGGTTTTCCAATTCCCGAACTTCTGCGAAATTTTGATTTTGATAGTTTTGAGGACGAGGAGGGACAACATTCATTTGATCCATTCTACAGTGTTGAGGAAGACGCAAAAGATTCGAGCCGAACATCTGTTGCTACAGTTTTAAATTTCCATAGTATCGCAATCGAAGATTCAACAGAAGAGTCCGTTTGTAGCTCCCATACTGGATTCGAAGTCACAGAATCTGACCAAAGGCCTGTTACTGTTGATGAAATAAATGGAACTAAAGCAACCGATGACAGAAATGACTCATGTTAA
Protein sequence

>MS.gene068072.t1

MELLRYWCHLNWNTFLVRFLCGGRLVFGPDVASLFLTTFLIAAPAIAFCVKMYLKAKHEKANNGDHLFWCPVVIVGSILTILDFLFLLLTSGRDPGIIPRNSTPPDYDDAFNIPTPSMEWINGSTPHLKLPRTKDVLVNGHTVKVKFCDTCLLYRPPRTSHCSICNNCVQRFDHHCPWVGQCIGRRNYRYFFMFISTSTILCLYVFVFSCINLSQKDFWDGISHDYVSDFLIIYCFIAVWFVGGLTAFHFYLICTNQTTYENFRYQYDKKGNPYNKGSLRNIGETLCSSIPASMNNFRSFVQQDEHTMVGGLTPNMADGILTPKEKIDVEMGSRRADDGGFPIPELLRNFDFDSFEDEEGQHSFDPFYSVEEDAKDSSRTSVATVLNFHSIAIEDSTEESVCSSHTGFEVTESDQRPVTVDEINGTKATDDRNDSC