Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068367.t1 | XP_013444598.1 | 85.2 | 393 | 58 | 0 | 20 | 412 | 5 | 397 | 1.80E-185 | 658.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068367.t1 | Q9S7T8 | 55.3 | 389 | 161 | 5 | 32 | 410 | 5 | 390 | 2.2e-115 | 417.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068367.t1 | A0A072TP44 | 85.2 | 393 | 58 | 0 | 20 | 412 | 5 | 397 | 1.3e-185 | 658.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068367 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene068367 | PPI |
| MS.gene068367 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene068367 | PPI |
| MS.gene065945 | MS.gene068367 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068367.t1 | MTR_8g027395 | 85.242 | 393 | 58 | 0 | 20 | 412 | 5 | 397 | 0.0 | 681 |
| MS.gene068367.t1 | MTR_8g027420 | 83.938 | 386 | 51 | 1 | 27 | 412 | 1 | 375 | 0.0 | 645 |
| MS.gene068367.t1 | MTR_4g088535 | 74.016 | 381 | 83 | 1 | 31 | 411 | 6 | 370 | 0.0 | 557 |
| MS.gene068367.t1 | MTR_4g088525 | 74.444 | 360 | 92 | 0 | 51 | 410 | 8 | 367 | 0.0 | 538 |
| MS.gene068367.t1 | MTR_3g018740 | 72.656 | 384 | 102 | 2 | 30 | 410 | 3 | 386 | 0.0 | 535 |
| MS.gene068367.t1 | MTR_3g101010 | 70.284 | 387 | 111 | 1 | 30 | 412 | 3 | 389 | 0.0 | 530 |
| MS.gene068367.t1 | MTR_4g045707 | 67.885 | 383 | 121 | 2 | 32 | 412 | 6 | 388 | 0.0 | 509 |
| MS.gene068367.t1 | MTR_2g045980 | 66.150 | 387 | 122 | 3 | 30 | 410 | 3 | 386 | 2.14e-174 | 492 |
| MS.gene068367.t1 | MTR_3g048000 | 63.325 | 409 | 122 | 5 | 6 | 411 | 8 | 391 | 6.20e-173 | 489 |
| MS.gene068367.t1 | MTR_8g461160 | 65.116 | 387 | 127 | 2 | 32 | 410 | 6 | 392 | 1.92e-172 | 488 |
| MS.gene068367.t1 | MTR_2g046030 | 65.375 | 387 | 125 | 3 | 30 | 410 | 3 | 386 | 6.16e-172 | 486 |
| MS.gene068367.t1 | MTR_7g050810 | 61.290 | 403 | 146 | 3 | 18 | 412 | 4 | 404 | 1.23e-168 | 478 |
| MS.gene068367.t1 | MTR_3g101180 | 64.213 | 394 | 127 | 4 | 32 | 411 | 6 | 399 | 2.20e-168 | 478 |
| MS.gene068367.t1 | MTR_3g101030 | 61.940 | 402 | 129 | 5 | 33 | 412 | 30 | 429 | 2.61e-168 | 478 |
| MS.gene068367.t1 | MTR_7g451890 | 60.614 | 391 | 146 | 2 | 30 | 412 | 12 | 402 | 9.04e-163 | 463 |
| MS.gene068367.t1 | MTR_3g101130 | 61.323 | 393 | 141 | 3 | 27 | 412 | 1 | 389 | 1.81e-162 | 462 |
| MS.gene068367.t1 | MTR_7g047780 | 61.125 | 391 | 144 | 2 | 30 | 412 | 12 | 402 | 4.50e-162 | 461 |
| MS.gene068367.t1 | MTR_7g050750 | 60.102 | 391 | 148 | 2 | 30 | 412 | 6 | 396 | 3.54e-160 | 456 |
| MS.gene068367.t1 | MTR_3g101050 | 62.141 | 383 | 122 | 5 | 34 | 410 | 31 | 396 | 1.25e-149 | 430 |
| MS.gene068367.t1 | MTR_3g015620 | 54.695 | 426 | 129 | 6 | 1 | 410 | 1 | 378 | 6.71e-145 | 417 |
| MS.gene068367.t1 | MTR_3g102920 | 55.396 | 417 | 141 | 7 | 3 | 411 | 30 | 409 | 2.34e-139 | 404 |
| MS.gene068367.t1 | MTR_3g101200 | 54.897 | 388 | 144 | 5 | 30 | 411 | 29 | 391 | 8.03e-129 | 377 |
| MS.gene068367.t1 | MTR_3g101190 | 55.801 | 362 | 101 | 3 | 51 | 412 | 10 | 312 | 6.56e-125 | 363 |
| MS.gene068367.t1 | MTR_3g100995 | 65.234 | 256 | 84 | 3 | 160 | 412 | 11 | 264 | 1.82e-113 | 333 |
| MS.gene068367.t1 | MTR_3g100010 | 58.710 | 310 | 80 | 2 | 57 | 333 | 42 | 336 | 2.58e-113 | 335 |
| MS.gene068367.t1 | MTR_3g018747 | 66.409 | 259 | 69 | 3 | 156 | 410 | 9 | 253 | 8.29e-112 | 328 |
| MS.gene068367.t1 | MTR_7g050830 | 54.259 | 317 | 112 | 3 | 30 | 324 | 14 | 319 | 1.08e-109 | 325 |
| MS.gene068367.t1 | MTR_3g015760 | 58.571 | 280 | 106 | 5 | 137 | 410 | 4 | 279 | 4.62e-96 | 289 |
| MS.gene068367.t1 | MTR_3g114310 | 43.734 | 391 | 201 | 10 | 37 | 412 | 24 | 410 | 9.66e-93 | 285 |
| MS.gene068367.t1 | MTR_3g100520 | 66.055 | 218 | 63 | 4 | 197 | 412 | 1 | 209 | 1.61e-90 | 272 |
| MS.gene068367.t1 | MTR_3g111160 | 66.829 | 205 | 65 | 2 | 211 | 412 | 16 | 220 | 2.03e-86 | 262 |
| MS.gene068367.t1 | MTR_3g101110 | 58.577 | 239 | 65 | 4 | 156 | 386 | 68 | 280 | 2.21e-83 | 257 |
| MS.gene068367.t1 | MTR_2g046410 | 61.574 | 216 | 74 | 3 | 201 | 410 | 135 | 347 | 1.32e-79 | 249 |
| MS.gene068367.t1 | MTR_3g099970 | 64.286 | 196 | 53 | 2 | 156 | 351 | 20 | 198 | 2.42e-79 | 243 |
| MS.gene068367.t1 | MTR_3g102870 | 65.409 | 159 | 55 | 0 | 221 | 379 | 3 | 161 | 2.25e-65 | 207 |
| MS.gene068367.t1 | MTR_3g111150 | 61.850 | 173 | 42 | 2 | 35 | 207 | 2 | 150 | 4.98e-65 | 206 |
| MS.gene068367.t1 | MTR_3g101020 | 54.839 | 186 | 55 | 3 | 230 | 412 | 1 | 160 | 1.17e-58 | 189 |
| MS.gene068367.t1 | MTR_3g101150 | 62.658 | 158 | 51 | 1 | 262 | 411 | 1 | 158 | 2.28e-58 | 188 |
| MS.gene068367.t1 | MTR_3g100990 | 64.667 | 150 | 52 | 1 | 32 | 181 | 5 | 153 | 7.83e-54 | 186 |
| MS.gene068367.t1 | MTR_4g093550 | 65.169 | 89 | 31 | 0 | 27 | 115 | 1 | 89 | 1.52e-32 | 118 |
| MS.gene068367.t1 | MTR_6g046890 | 65.278 | 72 | 25 | 0 | 40 | 111 | 7 | 78 | 1.21e-21 | 90.5 |
| MS.gene068367.t1 | MTR_3g101140 | 57.971 | 69 | 24 | 1 | 349 | 412 | 48 | 116 | 8.18e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068367.t1 | AT1G47710 | 55.270 | 389 | 161 | 5 | 32 | 410 | 5 | 390 | 4.11e-148 | 426 |
| MS.gene068367.t1 | AT1G47710 | 54.774 | 398 | 165 | 6 | 25 | 410 | 23 | 417 | 2.15e-147 | 425 |
| MS.gene068367.t1 | AT3G45220 | 47.179 | 390 | 194 | 4 | 30 | 409 | 3 | 390 | 6.94e-123 | 362 |
| MS.gene068367.t1 | AT2G25240 | 49.482 | 386 | 183 | 7 | 30 | 409 | 3 | 382 | 1.90e-122 | 360 |
| MS.gene068367.t1 | AT2G26390 | 47.970 | 394 | 181 | 8 | 30 | 409 | 3 | 386 | 1.77e-117 | 348 |
| MS.gene068367.t1 | AT1G64030 | 43.557 | 388 | 188 | 5 | 32 | 409 | 5 | 371 | 1.98e-102 | 309 |
| MS.gene068367.t1 | AT2G14540 | 44.527 | 402 | 187 | 8 | 19 | 409 | 21 | 397 | 3.26e-100 | 304 |
| MS.gene068367.t1 | AT1G62170 | 40.909 | 396 | 200 | 6 | 26 | 409 | 58 | 431 | 5.88e-99 | 302 |
| MS.gene068367.t1 | AT2G35580 | 41.294 | 402 | 193 | 8 | 17 | 409 | 4 | 371 | 2.73e-92 | 283 |
| MS.gene068367.t1 | AT1G62170 | 38.228 | 429 | 198 | 8 | 26 | 409 | 58 | 464 | 6.72e-92 | 285 |
| MS.gene068367.t1 | AT1G64010 | 45.370 | 216 | 94 | 4 | 197 | 409 | 1 | 195 | 1.90e-59 | 192 |
| MS.gene068367.t1 | AT1G64010 | 45.274 | 201 | 86 | 4 | 212 | 409 | 2 | 181 | 8.24e-54 | 177 |
| MS.gene068367.t1 | AT1G62160 | 39.205 | 176 | 86 | 4 | 236 | 409 | 62 | 218 | 3.19e-34 | 127 |
| MS.gene068367.t1 | AT1G63280 | 52.542 | 118 | 52 | 2 | 153 | 268 | 5 | 120 | 4.37e-33 | 120 |
| MS.gene068367.t1 | AT1G51330 | 53.571 | 112 | 49 | 3 | 154 | 262 | 29 | 140 | 1.02e-26 | 106 |
| MS.gene068367.t1 | AT2G35555 | 39.423 | 104 | 41 | 2 | 276 | 377 | 1 | 84 | 9.13e-13 | 65.1 |
| MS.gene068367.t1 | AT1G64020 | 34.513 | 113 | 69 | 4 | 37 | 146 | 10 | 120 | 3.42e-12 | 63.5 |
Find 93 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.3:+66933531 | MS.gene068367:CDS |
| AAGTTCTTCGTCTTCCTTAT+AGG | 0.196733 | 8.3:+66933786 | MS.gene068367:CDS |
| CCTACTTCTACTTGTTTATA+AGG | 0.236929 | 8.3:-66933926 | None:intergenic |
| GTGAGTTTACCTTTCTCTTC+TGG | 0.237208 | 8.3:+66934019 | MS.gene068367:CDS |
| CTCAAAGATGCTGCTTCTTC+TGG | 0.245520 | 8.3:+66932698 | MS.gene068367:CDS |
| AACCGTGTCTGCTGATTATA+AGG | 0.316130 | 8.3:+66932793 | MS.gene068367:CDS |
| GTAATCCATTTCCTGATTAT+AGG | 0.332766 | 8.3:+66933663 | MS.gene068367:CDS |
| ACCCAAGCAATCCTCTTTGC+AGG | 0.342039 | 8.3:+66934241 | MS.gene068367:CDS |
| CCAAATGAAAATTTGAATCT+TGG | 0.344733 | 8.3:-66933962 | None:intergenic |
| CGGTTTGTTGATTGAATCAC+AGG | 0.394834 | 8.3:-66932387 | None:intergenic |
| AAACCGAAAAGAACGGTTCT+TGG | 0.400378 | 8.3:+66932404 | MS.gene068367:CDS |
| CAAGTTCTCAATCCTCTTGT+TGG | 0.402792 | 8.3:+66934265 | MS.gene068367:CDS |
| TCCTGCAAAGAGGATTGCTT+GGG | 0.405116 | 8.3:-66934242 | None:intergenic |
| CTTGTCCTATAATCAGGAAA+TGG | 0.407915 | 8.3:-66933668 | None:intergenic |
| ATCATTGCTGCTGGCTCTGA+GGG | 0.408699 | 8.3:+66932587 | MS.gene068367:CDS |
| TATTCGCTTGTCCTATAATC+AGG | 0.416368 | 8.3:-66933674 | None:intergenic |
| TATAAGGAAGCTTGGGCTCT+AGG | 0.422399 | 8.3:-66933910 | None:intergenic |
| TACTTGTTTATAAGGAAGCT+TGG | 0.428203 | 8.3:-66933918 | None:intergenic |
| ACTTGTTTATAAGGAAGCTT+GGG | 0.428667 | 8.3:-66933917 | None:intergenic |
| AAGTTCTCAATCCTCTTGTT+GGG | 0.429816 | 8.3:+66934266 | MS.gene068367:CDS |
| CAAACTAACATACCTTGTTC+AGG | 0.440398 | 8.3:-66932838 | None:intergenic |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.3:+66933995 | MS.gene068367:CDS |
| GTCCTGCAAAGAGGATTGCT+TGG | 0.443239 | 8.3:-66934243 | None:intergenic |
| CTCTTTCGCCAATGGTGTGT+GGG | 0.444711 | 8.3:+66932733 | MS.gene068367:CDS |
| GCTATAAAGTCTATTCCTCT+TGG | 0.447224 | 8.3:-66934181 | None:intergenic |
| CCTCGCCTCTCTTTCGCCAA+TGG | 0.447900 | 8.3:+66932725 | MS.gene068367:CDS |
| GTTCTCAGCATCATTGCTGC+TGG | 0.450530 | 8.3:+66932578 | MS.gene068367:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.3:+66933532 | MS.gene068367:CDS |
| AGCAGACACGGTTTCTTTGA+AGG | 0.460069 | 8.3:-66932783 | None:intergenic |
| TCTCTAATTAGAAATAGAAA+AGG | 0.472534 | 8.3:-66934211 | None:intergenic |
| TTAAAGAAATTCTTCCTCAA+GGG | 0.477536 | 8.3:+66933579 | MS.gene068367:CDS |
| CAGAAGAAGCAGCATCTTTG+AGG | 0.479221 | 8.3:-66932697 | None:intergenic |
| TAAGGCCACTTTGTCTTCTG+TGG | 0.483558 | 8.3:+66932811 | MS.gene068367:CDS |
| CATCATTGCTGCTGGCTCTG+AGG | 0.484489 | 8.3:+66932586 | MS.gene068367:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 8.3:+66934052 | MS.gene068367:CDS |
| ATTAAAGAAATTCTTCCTCA+AGG | 0.489087 | 8.3:+66933578 | MS.gene068367:CDS |
| GAAGGAAGGTTGAAGACAAA+GGG | 0.489318 | 8.3:-66932765 | None:intergenic |
| CATCTTTGAGGAGGACAGAA+AGG | 0.490209 | 8.3:-66932685 | None:intergenic |
| TGAGGAGGACAGAAAGGAGA+TGG | 0.498848 | 8.3:-66932679 | None:intergenic |
| GAAAGACTTGTGAAATATGT+TGG | 0.499945 | 8.3:-66934092 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 8.3:-66934028 | None:intergenic |
| CTTCGTCTTCCTTATAGGCA+AGG | 0.509832 | 8.3:+66933791 | MS.gene068367:CDS |
| TGCTGCGACCAACGCTGGAA+AGG | 0.515352 | 8.3:+66934144 | MS.gene068367:CDS |
| GATCAGTGGATTTGAAATGA+AGG | 0.520613 | 8.3:-66932637 | None:intergenic |
| CTCTAATTAGAAATAGAAAA+GGG | 0.520858 | 8.3:-66934210 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.3:-66932502 | None:intergenic |
| GGTTGGTGCTTGATTCATCA+AGG | 0.525769 | 8.3:-66932466 | None:intergenic |
| AAAGATGCTGCTTCTTCTGG+TGG | 0.527819 | 8.3:+66932701 | MS.gene068367:CDS |
| AGTTTACCTTTCTCTTCTGG+AGG | 0.529550 | 8.3:+66934022 | MS.gene068367:CDS |
| CAAGGCCACCTTTCCAGCGT+TGG | 0.529698 | 8.3:-66934152 | None:intergenic |
| GAAGCTGCTGCGACCAACGC+TGG | 0.532585 | 8.3:+66934139 | MS.gene068367:CDS |
| AAGCACTAATAAATTGATGA+AGG | 0.534035 | 8.3:-66933751 | None:intergenic |
| GACACGGTTTCTTTGAAGGA+AGG | 0.534452 | 8.3:-66932779 | None:intergenic |
| TCTCTTTCGCCAATGGTGTG+TGG | 0.536811 | 8.3:+66932732 | MS.gene068367:CDS |
| CAATGATGCTGAGAACAACT+TGG | 0.536897 | 8.3:-66932571 | None:intergenic |
| ATCAGCTATGGTTGAGAAGG+TGG | 0.539080 | 8.3:+66933871 | MS.gene068367:CDS |
| CCTTATAAACAAGTAGAAGT+AGG | 0.541070 | 8.3:+66933926 | MS.gene068367:CDS |
| TTCTGTGGATTTCCTGAACA+AGG | 0.543973 | 8.3:+66932826 | MS.gene068367:CDS |
| GAGGGAAACTTTCGCTTGGT+TGG | 0.544101 | 8.3:-66932483 | None:intergenic |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.3:+66933988 | MS.gene068367:CDS |
| ATGAAGGTTGCTGTTCATGA+AGG | 0.557210 | 8.3:-66933735 | None:intergenic |
| TCTGAATGGCTGCTCAGTCA+AGG | 0.561229 | 8.3:+66933709 | MS.gene068367:CDS |
| TGAAGGAAGGTTGAAGACAA+AGG | 0.562109 | 8.3:-66932766 | None:intergenic |
| TCGAGAAGCTGTTGTTGAGT+AGG | 0.564349 | 8.3:-66932611 | None:intergenic |
| TGCGACCAACGCTGGAAAGG+TGG | 0.564957 | 8.3:+66934147 | MS.gene068367:CDS |
| AGAAGAAGAGGAACAAACAT+TGG | 0.565610 | 8.3:+66932439 | MS.gene068367:CDS |
| TTCATTGAAGTAAACGAGGA+AGG | 0.566637 | 8.3:+66934112 | MS.gene068367:CDS |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.3:-66932501 | None:intergenic |
| GAGGAGGACAGAAAGGAGAT+GGG | 0.575954 | 8.3:-66932678 | None:intergenic |
| GAAATATGTTGGAAACAGAA+AGG | 0.576851 | 8.3:-66934081 | None:intergenic |
| TGATGAATCAAAAGAAGAAG+AGG | 0.583126 | 8.3:+66932427 | MS.gene068367:CDS |
| TGAGAACTTGTCCTGCAAAG+AGG | 0.585568 | 8.3:-66934252 | None:intergenic |
| TGGTGAGGGAAACTTTCGCT+TGG | 0.590868 | 8.3:-66932487 | None:intergenic |
| AATTAAGATCACCCAACAAG+AGG | 0.592200 | 8.3:-66934277 | None:intergenic |
| AAAAGATGGACTATCAGCTA+TGG | 0.594662 | 8.3:+66933859 | MS.gene068367:CDS |
| ACTATCAGCTATGGTTGAGA+AGG | 0.605629 | 8.3:+66933868 | MS.gene068367:CDS |
| AAAAGAGTTGAGATGATCAG+TGG | 0.610674 | 8.3:-66932651 | None:intergenic |
| GGCCTTATAATCAGCAGACA+CGG | 0.613730 | 8.3:-66932795 | None:intergenic |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.620656 | 8.3:-66932507 | None:intergenic |
| ACACACCATTGGCGAAAGAG+AGG | 0.625171 | 8.3:-66932730 | None:intergenic |
| TTTCGCCAATGGTGTGTGGG+TGG | 0.626286 | 8.3:+66932736 | MS.gene068367:CDS |
| AGAACAACTTGGAGAGACAA+TGG | 0.632240 | 8.3:-66932560 | None:intergenic |
| AATCAACAAACCGAAAAGAA+CGG | 0.637048 | 8.3:+66932397 | MS.gene068367:CDS |
| TGACTGAGCAGCCATTCAGA+AGG | 0.641179 | 8.3:-66933706 | None:intergenic |
| TGAAGGTTGCTGTTCATGAA+GGG | 0.644764 | 8.3:-66933734 | None:intergenic |
| AAGAAGCAGCATCTTTGAGG+AGG | 0.648399 | 8.3:-66932694 | None:intergenic |
| GAAATCCACAGAAGACAAAG+TGG | 0.650231 | 8.3:-66932816 | None:intergenic |
| GTCTTTCATTGAAGTAAACG+AGG | 0.668981 | 8.3:+66934108 | MS.gene068367:CDS |
| GGTTTGTTGATTGAATCACA+GGG | 0.672157 | 8.3:-66932386 | None:intergenic |
| TATTCCTCTTGGAATACACA+AGG | 0.692487 | 8.3:-66934170 | None:intergenic |
| GTGGCCTTGTGTATTCCAAG+AGG | 0.698635 | 8.3:+66934166 | MS.gene068367:CDS |
| AAGCTGACAACTGACCCTTG+AGG | 0.771577 | 8.3:-66933593 | None:intergenic |
| CCATTGGCGAAAGAGAGGCG+AGG | 0.781616 | 8.3:-66932725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTGATATGTTTTAA+AGG | + | chr8.3:66933499-66933518 | MS.gene068367:intron | 10.0% |
| !!! | TTTCAAATTTGATGTTTTAA+AGG | + | chr8.3:66933452-66933471 | MS.gene068367:intron | 15.0% |
| !! | CTCTAATTAGAAATAGAAAA+GGG | - | chr8.3:66934213-66934232 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAGAAA+AGG | - | chr8.3:66934214-66934233 | None:intergenic | 20.0% |
| !! | TGTAAAATAGTCATTTGAAT+AGG | + | chr8.3:66933219-66933238 | MS.gene068367:intron | 20.0% |
| !!! | AATGCATTTCTTGAAATTTT+TGG | + | chr8.3:66932911-66932930 | MS.gene068367:intron | 20.0% |
| !!! | CAAGATTCAAATTTTCATTT+GGG | + | chr8.3:66933963-66933982 | MS.gene068367:CDS | 20.0% |
| ! | AAGCACTAATAAATTGATGA+AGG | - | chr8.3:66933754-66933773 | None:intergenic | 25.0% |
| ! | ATTAAAGAAATTCTTCCTCA+AGG | + | chr8.3:66933578-66933597 | MS.gene068367:CDS | 25.0% |
| ! | CCAAATGAAAATTTGAATCT+TGG | - | chr8.3:66933965-66933984 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.3:66933532-66933551 | MS.gene068367:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.3:66933531-66933550 | MS.gene068367:CDS | 25.0% |
| ! | TGTGACACAATTATAATACA+CGG | - | chr8.3:66932889-66932908 | None:intergenic | 25.0% |
| ! | TTAAAGAAATTCTTCCTCAA+GGG | + | chr8.3:66933579-66933598 | MS.gene068367:CDS | 25.0% |
| ! | TTTCTTCCAAATGAAAAAGA+TGG | + | chr8.3:66933845-66933864 | MS.gene068367:CDS | 25.0% |
| !! | AGTCTAATTTTCACATACTA+CGG | - | chr8.3:66933362-66933381 | None:intergenic | 25.0% |
| !! | CAATTTATTAGTGCTTTTGA+TGG | + | chr8.3:66933758-66933777 | MS.gene068367:CDS | 25.0% |
| !! | CCAAGATTCAAATTTTCATT+TGG | + | chr8.3:66933962-66933981 | MS.gene068367:CDS | 25.0% |
| !!! | GTAGTTTTTTTCATCTGTAT+AGG | + | chr8.3:66933157-66933176 | MS.gene068367:intron | 25.0% |
| !!! | TTTTTTTGAGAAGAGATGTT+TGG | - | chr8.3:66932516-66932535 | None:intergenic | 25.0% |
| AATCAACAAACCGAAAAGAA+CGG | + | chr8.3:66932397-66932416 | MS.gene068367:CDS | 30.0% | |
| ACTTGTTTATAAGGAAGCTT+GGG | - | chr8.3:66933920-66933939 | None:intergenic | 30.0% | |
| CCTACTTCTACTTGTTTATA+AGG | - | chr8.3:66933929-66933948 | None:intergenic | 30.0% | |
| CCTTATAAACAAGTAGAAGT+AGG | + | chr8.3:66933926-66933945 | MS.gene068367:CDS | 30.0% | |
| GAAAGACTTGTGAAATATGT+TGG | - | chr8.3:66934095-66934114 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.3:66934084-66934103 | None:intergenic | 30.0% | |
| GTAATCCATTTCCTGATTAT+AGG | + | chr8.3:66933663-66933682 | MS.gene068367:CDS | 30.0% | |
| TACTTGTTTATAAGGAAGCT+TGG | - | chr8.3:66933921-66933940 | None:intergenic | 30.0% | |
| TGATGAATCAAAAGAAGAAG+AGG | + | chr8.3:66932427-66932446 | MS.gene068367:CDS | 30.0% | |
| TGCTTCTTCAAAAGAATGAA+AGG | + | chr8.3:66933196-66933215 | MS.gene068367:intron | 30.0% | |
| TTAATCTTTCCATTTCATCC+TGG | + | chr8.3:66933118-66933137 | MS.gene068367:intron | 30.0% | |
| TTGGATGCTGAAAAACAAAA+AGG | - | chr8.3:66933328-66933347 | None:intergenic | 30.0% | |
| ! | GTCTAATTTTCACATACTAC+GGG | - | chr8.3:66933361-66933380 | None:intergenic | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr8.3:66933695-66933714 | MS.gene068367:CDS | 30.0% |
| ! | TCTAATTTTCACATACTACG+GGG | - | chr8.3:66933360-66933379 | None:intergenic | 30.0% |
| ! | TTATCTTTTCCTTGCCTATA+AGG | - | chr8.3:66933803-66933822 | None:intergenic | 30.0% |
| !! | GATAGTCCATCTTTTTCATT+TGG | - | chr8.3:66933854-66933873 | None:intergenic | 30.0% |
| !! | GCTAATGCACTGTATTTTAA+AGG | + | chr8.3:66933632-66933651 | MS.gene068367:CDS | 30.0% |
| !!! | CTGTTACTCTAGAATCATTT+TGG | - | chr8.3:66933289-66933308 | None:intergenic | 30.0% |
| !!! | CTTGCACTTGCTTTTTTAAA+TGG | + | chr8.3:66932965-66932984 | MS.gene068367:intron | 30.0% |
| !!! | TTGTTATTTTACCCTTAGTC+TGG | + | chr8.3:66933078-66933097 | MS.gene068367:intron | 30.0% |
| AAAAGAGTTGAGATGATCAG+TGG | - | chr8.3:66932654-66932673 | None:intergenic | 35.0% | |
| AAGTTCTCAATCCTCTTGTT+GGG | + | chr8.3:66934266-66934285 | MS.gene068367:CDS | 35.0% | |
| AAGTTCTTCGTCTTCCTTAT+AGG | + | chr8.3:66933786-66933805 | MS.gene068367:CDS | 35.0% | |
| AGAAGAAGAGGAACAAACAT+TGG | + | chr8.3:66932439-66932458 | MS.gene068367:CDS | 35.0% | |
| CAAACTAACATACCTTGTTC+AGG | - | chr8.3:66932841-66932860 | None:intergenic | 35.0% | |
| CTTGTCCTATAATCAGGAAA+TGG | - | chr8.3:66933671-66933690 | None:intergenic | 35.0% | |
| GCTATAAAGTCTATTCCTCT+TGG | - | chr8.3:66934184-66934203 | None:intergenic | 35.0% | |
| GTCTTTCATTGAAGTAAACG+AGG | + | chr8.3:66934108-66934127 | MS.gene068367:CDS | 35.0% | |
| TAGTTGTTAACGATGCTAAC+TGG | + | chr8.3:66933036-66933055 | MS.gene068367:intron | 35.0% | |
| TATTCCTCTTGGAATACACA+AGG | - | chr8.3:66934173-66934192 | None:intergenic | 35.0% | |
| TATTCGCTTGTCCTATAATC+AGG | - | chr8.3:66933677-66933696 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.3:66933988-66934007 | MS.gene068367:CDS | 35.0% | |
| TGCTGAAAAACAAAAAGGAG+AGG | - | chr8.3:66933323-66933342 | None:intergenic | 35.0% | |
| TTAACGATGCTAACTGGATT+TGG | + | chr8.3:66933042-66933061 | MS.gene068367:intron | 35.0% | |
| TTCATTGAAGTAAACGAGGA+AGG | + | chr8.3:66934112-66934131 | MS.gene068367:CDS | 35.0% | |
| ! | GATCAGTGGATTTGAAATGA+AGG | - | chr8.3:66932640-66932659 | None:intergenic | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | + | chr8.3:66934036-66934055 | MS.gene068367:CDS | 35.0% |
| !! | AAAAGATGGACTATCAGCTA+TGG | + | chr8.3:66933859-66933878 | MS.gene068367:CDS | 35.0% |
| !! | CACTGTATTTTAAAGGAGCA+TGG | + | chr8.3:66933639-66933658 | MS.gene068367:CDS | 35.0% |
| !! | GGTTTGTTGATTGAATCACA+GGG | - | chr8.3:66932389-66932408 | None:intergenic | 35.0% |
| AAACCGAAAAGAACGGTTCT+TGG | + | chr8.3:66932404-66932423 | MS.gene068367:CDS | 40.0% | |
| ACTATCAGCTATGGTTGAGA+AGG | + | chr8.3:66933868-66933887 | MS.gene068367:CDS | 40.0% | |
| AGAACAACTTGGAGAGACAA+TGG | - | chr8.3:66932563-66932582 | None:intergenic | 40.0% | |
| AGTTTACCTTTCTCTTCTGG+AGG | + | chr8.3:66934022-66934041 | MS.gene068367:CDS | 40.0% | |
| CAAGTTCTCAATCCTCTTGT+TGG | + | chr8.3:66934265-66934284 | MS.gene068367:CDS | 40.0% | |
| CAATGATGCTGAGAACAACT+TGG | - | chr8.3:66932574-66932593 | None:intergenic | 40.0% | |
| GAAATCCACAGAAGACAAAG+TGG | - | chr8.3:66932819-66932838 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGACAAA+GGG | - | chr8.3:66932768-66932787 | None:intergenic | 40.0% | |
| GTGAGTTTACCTTTCTCTTC+TGG | + | chr8.3:66934019-66934038 | MS.gene068367:CDS | 40.0% | |
| TACTACGGGGCTATATTAGT+TGG | - | chr8.3:66933347-66933366 | None:intergenic | 40.0% | |
| TATACCAAGCCAGGATGAAA+TGG | - | chr8.3:66933130-66933149 | None:intergenic | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.3:66933995-66934014 | MS.gene068367:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGACAA+AGG | - | chr8.3:66932769-66932788 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.3:66934039-66934058 | MS.gene068367:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.3:66933551-66933570 | MS.gene068367:CDS | 40.0% | |
| TTCTGTGGATTTCCTGAACA+AGG | + | chr8.3:66932826-66932845 | MS.gene068367:CDS | 40.0% | |
| ! | AACCGTGTCTGCTGATTATA+AGG | + | chr8.3:66932793-66932812 | MS.gene068367:CDS | 40.0% |
| ! | ATGAAGGTTGCTGTTCATGA+AGG | - | chr8.3:66933738-66933757 | None:intergenic | 40.0% |
| ! | TCACCAAGAACCGTTCTTTT+CGG | - | chr8.3:66932410-66932429 | None:intergenic | 40.0% |
| ! | TGAAGGTTGCTGTTCATGAA+GGG | - | chr8.3:66933737-66933756 | None:intergenic | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.3:66934052-66934071 | MS.gene068367:CDS | 40.0% |
| !! | CGGTTTGTTGATTGAATCAC+AGG | - | chr8.3:66932390-66932409 | None:intergenic | 40.0% |
| AAGCTTCTGAGCCAGACTAA+GGG | - | chr8.3:66933092-66933111 | None:intergenic | 45.0% | |
| ACTCTTCTGTATACCAAGCC+AGG | - | chr8.3:66933139-66933158 | None:intergenic | 45.0% | |
| AGCAGACACGGTTTCTTTGA+AGG | - | chr8.3:66932786-66932805 | None:intergenic | 45.0% | |
| ATCAGCTATGGTTGAGAAGG+TGG | + | chr8.3:66933871-66933890 | MS.gene068367:CDS | 45.0% | |
| CAGAAGAAGCAGCATCTTTG+AGG | - | chr8.3:66932700-66932719 | None:intergenic | 45.0% | |
| CTTCGTCTTCCTTATAGGCA+AGG | + | chr8.3:66933791-66933810 | MS.gene068367:CDS | 45.0% | |
| CTTTCCATTTCATCCTGGCT+TGG | + | chr8.3:66933123-66933142 | MS.gene068367:intron | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | - | chr8.3:66934031-66934050 | None:intergenic | 45.0% | |
| TATAAGGAAGCTTGGGCTCT+AGG | - | chr8.3:66933913-66933932 | None:intergenic | 45.0% | |
| TCCTGCAAAGAGGATTGCTT+GGG | - | chr8.3:66934245-66934264 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGAGT+AGG | - | chr8.3:66932614-66932633 | None:intergenic | 45.0% | |
| TGAGAACTTGTCCTGCAAAG+AGG | - | chr8.3:66934255-66934274 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.3:66932510-66932529 | None:intergenic | 45.0% | |
| ! | AAAGATGCTGCTTCTTCTGG+TGG | + | chr8.3:66932701-66932720 | MS.gene068367:CDS | 45.0% |
| ! | AAGAAGCAGCATCTTTGAGG+AGG | - | chr8.3:66932697-66932716 | None:intergenic | 45.0% |
| ! | CATCTTTGAGGAGGACAGAA+AGG | - | chr8.3:66932688-66932707 | None:intergenic | 45.0% |
| ! | CTCAAAGATGCTGCTTCTTC+TGG | + | chr8.3:66932698-66932717 | MS.gene068367:CDS | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.3:66932782-66932801 | None:intergenic | 45.0% |
| ! | GGCCTTATAATCAGCAGACA+CGG | - | chr8.3:66932798-66932817 | None:intergenic | 45.0% |
| ! | GGTTGGTGCTTGATTCATCA+AGG | - | chr8.3:66932469-66932488 | None:intergenic | 45.0% |
| ! | TAAGGCCACTTTGTCTTCTG+TGG | + | chr8.3:66932811-66932830 | MS.gene068367:CDS | 45.0% |
| AAGCTGACAACTGACCCTTG+AGG | - | chr8.3:66933596-66933615 | None:intergenic | 50.0% | |
| ACACACCATTGGCGAAAGAG+AGG | - | chr8.3:66932733-66932752 | None:intergenic | 50.0% | |
| ACCCAAGCAATCCTCTTTGC+AGG | + | chr8.3:66934241-66934260 | MS.gene068367:CDS | 50.0% | |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.3:66932505-66932524 | None:intergenic | 50.0% | |
| CTCTTTCGCCAATGGTGTGT+GGG | + | chr8.3:66932733-66932752 | MS.gene068367:CDS | 50.0% | |
| GAAGCTTCTGAGCCAGACTA+AGG | - | chr8.3:66933093-66933112 | None:intergenic | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.3:66932504-66932523 | None:intergenic | 50.0% | |
| GAGGAGGACAGAAAGGAGAT+GGG | - | chr8.3:66932681-66932700 | None:intergenic | 50.0% | |
| GAGGGAAACTTTCGCTTGGT+TGG | - | chr8.3:66932486-66932505 | None:intergenic | 50.0% | |
| GTCCTGCAAAGAGGATTGCT+TGG | - | chr8.3:66934246-66934265 | None:intergenic | 50.0% | |
| GTTCTCAGCATCATTGCTGC+TGG | + | chr8.3:66932578-66932597 | MS.gene068367:CDS | 50.0% | |
| TCTCTTTCGCCAATGGTGTG+TGG | + | chr8.3:66932732-66932751 | MS.gene068367:CDS | 50.0% | |
| TCTGAATGGCTGCTCAGTCA+AGG | + | chr8.3:66933709-66933728 | MS.gene068367:CDS | 50.0% | |
| TGACTGAGCAGCCATTCAGA+AGG | - | chr8.3:66933709-66933728 | None:intergenic | 50.0% | |
| TGAGGAGGACAGAAAGGAGA+TGG | - | chr8.3:66932682-66932701 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACTTTCGCT+TGG | - | chr8.3:66932490-66932509 | None:intergenic | 50.0% | |
| ! | CTTTTCCACCCACACACCAT+TGG | - | chr8.3:66932744-66932763 | None:intergenic | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+GGG | + | chr8.3:66932587-66932606 | MS.gene068367:CDS | 50.0% |
| !! | GTGGCCTTGTGTATTCCAAG+AGG | + | chr8.3:66934166-66934185 | MS.gene068367:CDS | 50.0% |
| TTTCGCCAATGGTGTGTGGG+TGG | + | chr8.3:66932736-66932755 | MS.gene068367:CDS | 55.0% | |
| !! | CATCATTGCTGCTGGCTCTG+AGG | + | chr8.3:66932586-66932605 | MS.gene068367:CDS | 55.0% |
| CAAGGCCACCTTTCCAGCGT+TGG | - | chr8.3:66934155-66934174 | None:intergenic | 60.0% | |
| CCATTGGCGAAAGAGAGGCG+AGG | - | chr8.3:66932728-66932747 | None:intergenic | 60.0% | |
| CCTCGCCTCTCTTTCGCCAA+TGG | + | chr8.3:66932725-66932744 | MS.gene068367:CDS | 60.0% | |
| TGCGACCAACGCTGGAAAGG+TGG | + | chr8.3:66934147-66934166 | MS.gene068367:CDS | 60.0% | |
| TGCTGCGACCAACGCTGGAA+AGG | + | chr8.3:66934144-66934163 | MS.gene068367:CDS | 60.0% | |
| GAAGCTGCTGCGACCAACGC+TGG | + | chr8.3:66934139-66934158 | MS.gene068367:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 66932380 | 66934291 | 66932380 | ID=MS.gene068367 |
| chr8.3 | mRNA | 66932380 | 66934291 | 66932380 | ID=MS.gene068367.t1;Parent=MS.gene068367 |
| chr8.3 | exon | 66932380 | 66932847 | 66932380 | ID=MS.gene068367.t1.exon1;Parent=MS.gene068367.t1 |
| chr8.3 | CDS | 66932380 | 66932847 | 66932380 | ID=cds.MS.gene068367.t1;Parent=MS.gene068367.t1 |
| chr8.3 | exon | 66933521 | 66934291 | 66933521 | ID=MS.gene068367.t1.exon2;Parent=MS.gene068367.t1 |
| chr8.3 | CDS | 66933521 | 66934291 | 66933521 | ID=cds.MS.gene068367.t1;Parent=MS.gene068367.t1 |
| Gene Sequence |
| Protein sequence |
