Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068369.t1 | XP_013444598.1 | 87.6 | 386 | 47 | 1 | 1 | 385 | 12 | 397 | 2.00E-186 | 661.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068369.t1 | Q9S7T8 | 54.3 | 381 | 167 | 4 | 10 | 383 | 10 | 390 | 3.9e-114 | 412.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068369.t1 | A0A072TP44 | 87.6 | 386 | 47 | 1 | 1 | 385 | 12 | 397 | 1.4e-186 | 661.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene068369 | PPI |
| MS.gene068369 | MS.gene045585 | PPI |
| MS.gene068369 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene068369 | PPI |
| MS.gene065945 | MS.gene068369 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068369.t1 | MTR_8g027395 | 87.565 | 386 | 47 | 1 | 1 | 385 | 12 | 397 | 0.0 | 684 |
| MS.gene068369.t1 | MTR_8g027420 | 85.751 | 386 | 43 | 2 | 1 | 385 | 1 | 375 | 0.0 | 653 |
| MS.gene068369.t1 | MTR_4g088525 | 75.346 | 361 | 89 | 0 | 24 | 384 | 8 | 368 | 0.0 | 548 |
| MS.gene068369.t1 | MTR_4g088535 | 72.895 | 380 | 87 | 2 | 5 | 384 | 7 | 370 | 0.0 | 546 |
| MS.gene068369.t1 | MTR_3g018740 | 71.244 | 386 | 108 | 2 | 1 | 383 | 1 | 386 | 0.0 | 523 |
| MS.gene068369.t1 | MTR_4g045707 | 69.577 | 378 | 113 | 2 | 10 | 385 | 11 | 388 | 0.0 | 516 |
| MS.gene068369.t1 | MTR_3g101010 | 70.079 | 381 | 110 | 1 | 9 | 385 | 9 | 389 | 0.0 | 513 |
| MS.gene068369.t1 | MTR_2g045980 | 64.781 | 389 | 128 | 4 | 1 | 383 | 1 | 386 | 8.51e-170 | 479 |
| MS.gene068369.t1 | MTR_2g046030 | 63.753 | 389 | 132 | 4 | 1 | 383 | 1 | 386 | 2.72e-168 | 476 |
| MS.gene068369.t1 | MTR_3g048000 | 64.380 | 379 | 116 | 3 | 8 | 384 | 30 | 391 | 6.24e-168 | 475 |
| MS.gene068369.t1 | MTR_8g461160 | 63.708 | 383 | 131 | 2 | 9 | 383 | 10 | 392 | 4.21e-166 | 470 |
| MS.gene068369.t1 | MTR_3g101180 | 63.939 | 391 | 127 | 4 | 8 | 384 | 9 | 399 | 4.61e-166 | 471 |
| MS.gene068369.t1 | MTR_3g101030 | 62.095 | 401 | 128 | 5 | 7 | 385 | 31 | 429 | 9.84e-166 | 471 |
| MS.gene068369.t1 | MTR_7g050810 | 61.140 | 386 | 142 | 2 | 8 | 385 | 19 | 404 | 1.01e-160 | 457 |
| MS.gene068369.t1 | MTR_3g101130 | 61.538 | 390 | 139 | 4 | 3 | 385 | 4 | 389 | 1.13e-159 | 454 |
| MS.gene068369.t1 | MTR_7g050750 | 59.585 | 386 | 148 | 2 | 8 | 385 | 11 | 396 | 1.66e-157 | 449 |
| MS.gene068369.t1 | MTR_7g047780 | 60.104 | 386 | 146 | 2 | 8 | 385 | 17 | 402 | 1.73e-157 | 449 |
| MS.gene068369.t1 | MTR_7g451890 | 59.326 | 386 | 149 | 2 | 8 | 385 | 17 | 402 | 5.10e-157 | 447 |
| MS.gene068369.t1 | MTR_3g101050 | 60.104 | 386 | 125 | 5 | 7 | 383 | 31 | 396 | 1.06e-146 | 421 |
| MS.gene068369.t1 | MTR_3g015620 | 59.536 | 388 | 125 | 5 | 4 | 383 | 15 | 378 | 3.10e-142 | 409 |
| MS.gene068369.t1 | MTR_3g102920 | 56.701 | 388 | 124 | 6 | 5 | 384 | 58 | 409 | 1.59e-135 | 393 |
| MS.gene068369.t1 | MTR_3g101200 | 57.143 | 364 | 125 | 5 | 27 | 384 | 53 | 391 | 7.00e-129 | 376 |
| MS.gene068369.t1 | MTR_3g101190 | 56.267 | 359 | 98 | 2 | 27 | 385 | 13 | 312 | 4.41e-127 | 368 |
| MS.gene068369.t1 | MTR_3g100995 | 66.016 | 256 | 82 | 3 | 133 | 385 | 11 | 264 | 9.73e-114 | 332 |
| MS.gene068369.t1 | MTR_3g018747 | 67.181 | 259 | 67 | 3 | 129 | 383 | 9 | 253 | 9.14e-113 | 330 |
| MS.gene068369.t1 | MTR_3g100010 | 57.742 | 310 | 83 | 4 | 30 | 306 | 42 | 336 | 8.53e-111 | 328 |
| MS.gene068369.t1 | MTR_7g050830 | 53.420 | 307 | 110 | 3 | 13 | 297 | 24 | 319 | 5.30e-104 | 310 |
| MS.gene068369.t1 | MTR_3g114310 | 43.990 | 391 | 200 | 10 | 10 | 385 | 24 | 410 | 5.56e-96 | 293 |
| MS.gene068369.t1 | MTR_3g015760 | 57.500 | 280 | 109 | 5 | 110 | 383 | 4 | 279 | 4.06e-95 | 286 |
| MS.gene068369.t1 | MTR_3g100520 | 63.761 | 218 | 68 | 4 | 170 | 385 | 1 | 209 | 9.38e-88 | 264 |
| MS.gene068369.t1 | MTR_3g111160 | 64.091 | 220 | 75 | 3 | 170 | 385 | 1 | 220 | 7.32e-87 | 262 |
| MS.gene068369.t1 | MTR_3g101110 | 58.159 | 239 | 66 | 4 | 129 | 359 | 68 | 280 | 2.40e-82 | 253 |
| MS.gene068369.t1 | MTR_3g099970 | 65.306 | 196 | 51 | 2 | 129 | 324 | 20 | 198 | 8.41e-82 | 249 |
| MS.gene068369.t1 | MTR_2g046410 | 62.673 | 217 | 70 | 4 | 174 | 383 | 135 | 347 | 3.11e-80 | 250 |
| MS.gene068369.t1 | MTR_3g111150 | 63.006 | 173 | 40 | 2 | 8 | 180 | 2 | 150 | 4.85e-67 | 210 |
| MS.gene068369.t1 | MTR_3g102870 | 63.522 | 159 | 58 | 0 | 194 | 352 | 3 | 161 | 8.05e-65 | 204 |
| MS.gene068369.t1 | MTR_3g101020 | 55.376 | 186 | 54 | 3 | 203 | 385 | 1 | 160 | 6.77e-59 | 189 |
| MS.gene068369.t1 | MTR_3g101150 | 62.025 | 158 | 52 | 1 | 235 | 384 | 1 | 158 | 3.83e-58 | 187 |
| MS.gene068369.t1 | MTR_3g100990 | 63.636 | 154 | 55 | 1 | 1 | 154 | 1 | 153 | 5.10e-56 | 191 |
| MS.gene068369.t1 | MTR_4g093550 | 65.169 | 89 | 30 | 1 | 1 | 88 | 1 | 89 | 2.49e-29 | 109 |
| MS.gene068369.t1 | MTR_6g046890 | 56.977 | 86 | 32 | 1 | 13 | 93 | 7 | 92 | 3.17e-20 | 86.3 |
| MS.gene068369.t1 | MTR_3g101140 | 57.971 | 69 | 24 | 2 | 322 | 385 | 48 | 116 | 9.66e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068369.t1 | AT1G47710 | 54.331 | 381 | 167 | 4 | 10 | 383 | 10 | 390 | 1.43e-146 | 421 |
| MS.gene068369.t1 | AT1G47710 | 54.331 | 381 | 167 | 4 | 10 | 383 | 37 | 417 | 7.20e-146 | 420 |
| MS.gene068369.t1 | AT2G25240 | 48.684 | 380 | 183 | 7 | 9 | 382 | 9 | 382 | 1.50e-120 | 354 |
| MS.gene068369.t1 | AT3G45220 | 46.615 | 384 | 193 | 4 | 9 | 382 | 9 | 390 | 7.69e-120 | 353 |
| MS.gene068369.t1 | AT2G26390 | 47.135 | 384 | 187 | 7 | 9 | 382 | 9 | 386 | 4.67e-116 | 343 |
| MS.gene068369.t1 | AT1G64030 | 42.969 | 384 | 188 | 5 | 9 | 382 | 9 | 371 | 6.50e-101 | 304 |
| MS.gene068369.t1 | AT1G62170 | 42.350 | 366 | 178 | 5 | 27 | 382 | 89 | 431 | 5.42e-96 | 293 |
| MS.gene068369.t1 | AT2G14540 | 44.935 | 385 | 177 | 7 | 9 | 382 | 37 | 397 | 6.02e-96 | 292 |
| MS.gene068369.t1 | AT1G62170 | 38.847 | 399 | 178 | 6 | 27 | 382 | 89 | 464 | 5.21e-89 | 276 |
| MS.gene068369.t1 | AT2G35580 | 42.507 | 367 | 179 | 8 | 28 | 382 | 25 | 371 | 1.10e-87 | 270 |
| MS.gene068369.t1 | AT1G64010 | 44.907 | 216 | 95 | 4 | 170 | 382 | 1 | 195 | 6.98e-60 | 192 |
| MS.gene068369.t1 | AT1G64010 | 44.776 | 201 | 87 | 4 | 185 | 382 | 2 | 181 | 5.52e-54 | 177 |
| MS.gene068369.t1 | AT1G63280 | 52.542 | 118 | 52 | 2 | 126 | 241 | 5 | 120 | 1.80e-33 | 121 |
| MS.gene068369.t1 | AT1G62160 | 35.714 | 196 | 102 | 4 | 192 | 382 | 42 | 218 | 7.08e-33 | 123 |
| MS.gene068369.t1 | AT1G51330 | 54.167 | 96 | 44 | 0 | 127 | 222 | 29 | 124 | 2.16e-26 | 105 |
| MS.gene068369.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 10 | 119 | 10 | 120 | 3.92e-12 | 63.2 |
| MS.gene068369.t1 | AT2G35555 | 38.462 | 104 | 42 | 2 | 249 | 350 | 1 | 84 | 5.38e-12 | 62.8 |
Find 87 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.3:+66942119 | MS.gene068369:CDS |
| GTGAGTTTACCTTTCTCTTC+TGG | 0.237208 | 8.3:+66942607 | MS.gene068369:CDS |
| GGAGTAATCCATTTCCTAAT+TGG | 0.264163 | 8.3:+66942248 | MS.gene068369:CDS |
| TATTTGCTTGTCCTCCAATT+AGG | 0.267781 | 8.3:-66942262 | None:intergenic |
| TCAAGGTTGCTGCTCATAAA+AGG | 0.296458 | 8.3:-66942322 | None:intergenic |
| AATCTTCTCTAATTAGAAAT+AGG | 0.325707 | 8.3:-66942804 | None:intergenic |
| GCTACAGCCAATGCTGGAAT+AGG | 0.327490 | 8.3:+66942733 | MS.gene068369:CDS |
| AACCGTGTCTACCGATTATA+AGG | 0.341076 | 8.3:+66941018 | MS.gene068369:CDS |
| CCAAATGAAAATTTGAATCT+TGG | 0.344733 | 8.3:-66942550 | None:intergenic |
| CAGGTTCTCAATCCTCTTGT+TGG | 0.356093 | 8.3:+66942853 | MS.gene068369:CDS |
| CTTGTCCTCCAATTAGGAAA+TGG | 0.370502 | 8.3:-66942256 | None:intergenic |
| GCCTTCCTCGTTTACTTCAA+TGG | 0.372422 | 8.3:-66942701 | None:intergenic |
| CTACAGCCAATGCTGGAATA+GGG | 0.378345 | 8.3:+66942734 | MS.gene068369:CDS |
| CCCACTCTCACTTGTTTACA+AGG | 0.380063 | 8.3:-66942514 | None:intergenic |
| AGGTTCTCAATCCTCTTGTT+GGG | 0.390454 | 8.3:+66942854 | MS.gene068369:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.390951 | 8.3:+66942433 | MS.gene068369:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 8.3:-66940991 | None:intergenic |
| CACTTGTTTACAAGGAAGCT+TGG | 0.406222 | 8.3:-66942506 | None:intergenic |
| GTCCGGCAAAGATGATCGTT+TGG | 0.407941 | 8.3:-66942831 | None:intergenic |
| CGGAAGAAGCTGCGTCTTTG+AGG | 0.413427 | 8.3:-66940922 | None:intergenic |
| ACCCAAACGATCATCTTTGC+CGG | 0.414042 | 8.3:+66942829 | MS.gene068369:CDS |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.3:+66942583 | MS.gene068369:CDS |
| CTTGGTTGGTGCTTTCATCA+AGG | 0.442833 | 8.3:-66940694 | None:intergenic |
| AGCAAGAGTGGCCTTATAAT+CGG | 0.444016 | 8.3:-66941029 | None:intergenic |
| ACTTGTTTACAAGGAAGCTT+GGG | 0.449179 | 8.3:-66942505 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 8.3:-66940990 | None:intergenic |
| TACAAGGAAGCTTGGGCTCT+AGG | 0.450782 | 8.3:-66942498 | None:intergenic |
| CAATGATGCTGAGGACAACT+TGG | 0.452304 | 8.3:-66940796 | None:intergenic |
| AACGATCATCTTTGCCGGAC+AGG | 0.453881 | 8.3:+66942834 | MS.gene068369:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.3:+66942120 | MS.gene068369:CDS |
| GTCCTCAGCATCATTGCTGC+TGG | 0.456068 | 8.3:+66940803 | MS.gene068369:CDS |
| ATCATTGCTGCTGGCTCTGA+CGG | 0.456716 | 8.3:+66940812 | MS.gene068369:CDS |
| TCCGGCAAAGATGATCGTTT+GGG | 0.463042 | 8.3:-66942830 | None:intergenic |
| GGGGCCATGTGTGTGCCAAC+TGG | 0.466848 | 8.3:+66942754 | MS.gene068369:CDS |
| GGTAGACACGGTTTCTTTGA+AGG | 0.469655 | 8.3:-66941008 | None:intergenic |
| TTAAAGAAATTCTTCCTCAA+GGG | 0.477536 | 8.3:+66942167 | MS.gene068369:CDS |
| CTTCGTCTTCCTTATAAACA+AGG | 0.483822 | 8.3:+66942379 | MS.gene068369:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 8.3:+66942640 | MS.gene068369:CDS |
| ATTAAAGAAATTCTTCCTCA+AGG | 0.489087 | 8.3:+66942166 | MS.gene068369:CDS |
| GAAGCTGCTACAGCCAATGC+TGG | 0.496627 | 8.3:+66942727 | MS.gene068369:CDS |
| AAGCACTAATAAACTGATCA+AGG | 0.496927 | 8.3:-66942339 | None:intergenic |
| GGAAGACTTGTGAAATATGT+TGG | 0.499945 | 8.3:-66942680 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 8.3:-66942616 | None:intergenic |
| GAAAAGACGATGTTGTTGTC+TGG | 0.511591 | 8.3:-66940761 | None:intergenic |
| TTTCTCCACCCACACACCAT+TGG | 0.515807 | 8.3:-66940966 | None:intergenic |
| TTCTGTTGATTTCATAAACA+AGG | 0.518935 | 8.3:+66941051 | MS.gene068369:CDS |
| CGTCTTTGAGGAGGACAGAA+AGG | 0.521608 | 8.3:-66940910 | None:intergenic |
| TAGAAATAGGAAAGGGTGAT+CGG | 0.524118 | 8.3:-66942791 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.3:-66940727 | None:intergenic |
| CTCTAATTAGAAATAGGAAA+GGG | 0.528170 | 8.3:-66942798 | None:intergenic |
| AGTTTACCTTTCTCTTCTGG+AGG | 0.529550 | 8.3:+66942610 | MS.gene068369:CDS |
| GTAATCCATTTCCTAATTGG+AGG | 0.529962 | 8.3:+66942251 | MS.gene068369:CDS |
| GATGATCGATGGATTTGAAA+CGG | 0.537183 | 8.3:-66940865 | None:intergenic |
| ACTATCAGCTATGGTTAAGA+AGG | 0.542661 | 8.3:+66942456 | MS.gene068369:CDS |
| GAGGGAAACTTTCGCTTGGT+TGG | 0.544101 | 8.3:-66940708 | None:intergenic |
| AAGAGGATTGAGAACCTGTC+CGG | 0.545651 | 8.3:-66942848 | None:intergenic |
| AAAAGAGAGGCGAGGACCAT+CGG | 0.546211 | 8.3:-66940942 | None:intergenic |
| GACACGGTTTCTTTGAAGGA+AGG | 0.549001 | 8.3:-66941004 | None:intergenic |
| GCTATAAAGTCTATTCCAGT+TGG | 0.552837 | 8.3:-66942769 | None:intergenic |
| CATGGCCCCTATTCCAGCAT+TGG | 0.553337 | 8.3:-66942740 | None:intergenic |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.3:+66942576 | MS.gene068369:CDS |
| TGACTGAGCTGCCATTCAGA+AGG | 0.569757 | 8.3:-66942294 | None:intergenic |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.3:-66940726 | None:intergenic |
| AAAAGAGTTGAGATGATCGA+TGG | 0.575570 | 8.3:-66940876 | None:intergenic |
| GAAATATGTTGGAAACAGAA+AGG | 0.576851 | 8.3:-66942669 | None:intergenic |
| TACAGCCAATGCTGGAATAG+GGG | 0.578083 | 8.3:+66942735 | MS.gene068369:CDS |
| TCCTTGTAAACAAGTGAGAG+TGG | 0.586315 | 8.3:+66942513 | MS.gene068369:CDS |
| TCTCTAATTAGAAATAGGAA+AGG | 0.590645 | 8.3:-66942799 | None:intergenic |
| TGGTGAGGGAAACTTTCGCT+TGG | 0.590868 | 8.3:-66940712 | None:intergenic |
| AAAAGATGGACTATCAGCTA+TGG | 0.594137 | 8.3:+66942447 | MS.gene068369:CDS |
| AAAGACGCAGCTTCTTCCGA+TGG | 0.595754 | 8.3:+66940926 | MS.gene068369:CDS |
| GAAATCAACAGAAGCAAGAG+TGG | 0.596009 | 8.3:-66941041 | None:intergenic |
| AGTTAAGATCACCCAACAAG+AGG | 0.599430 | 8.3:-66942865 | None:intergenic |
| ATCAGCTATGGTTAAGAAGG+TGG | 0.601632 | 8.3:+66942459 | MS.gene068369:CDS |
| AGCCAGCAGCAATGATGCTG+AGG | 0.612609 | 8.3:-66940805 | None:intergenic |
| TCCATTGAAGTAAACGAGGA+AGG | 0.614593 | 8.3:+66942700 | MS.gene068369:CDS |
| AAGAAGCTGCGTCTTTGAGG+AGG | 0.630926 | 8.3:-66940919 | None:intergenic |
| AGGACAACTTGGAGAGACAA+TGG | 0.633307 | 8.3:-66940785 | None:intergenic |
| TATTCCAGTTGGCACACACA+TGG | 0.635717 | 8.3:-66942758 | None:intergenic |
| CCTTGTAAACAAGTGAGAGT+GGG | 0.637090 | 8.3:+66942514 | MS.gene068369:CDS |
| GGCCTTATAATCGGTAGACA+CGG | 0.646263 | 8.3:-66941020 | None:intergenic |
| ACACACCATTGGCAAAAGAG+AGG | 0.646815 | 8.3:-66940955 | None:intergenic |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.659173 | 8.3:-66940732 | None:intergenic |
| GTCTTCCATTGAAGTAAACG+AGG | 0.688424 | 8.3:+66942696 | MS.gene068369:CDS |
| GATCGATGGATTTGAAACGG+AGG | 0.709969 | 8.3:-66940862 | None:intergenic |
| AAGCTGTCAACTGACCCTTG+AGG | 0.752414 | 8.3:-66942181 | None:intergenic |
| CCATTGGCAAAAGAGAGGCG+AGG | 0.766373 | 8.3:-66940950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTGATATTGTATTTA+AGG | + | chr8.3:66942087-66942106 | MS.gene068369:intron | 10.0% |
| !! | ACATAATATTCCTTAAATTT+GGG | - | chr8.3:66941554-66941573 | None:intergenic | 15.0% |
| !! | TACATAATATTCCTTAAATT+TGG | - | chr8.3:66941555-66941574 | None:intergenic | 15.0% |
| !! | TATTATCTCATATTATCTAT+TGG | - | chr8.3:66941836-66941855 | None:intergenic | 15.0% |
| !!! | AATAAAATTTGCTCTAAATT+AGG | - | chr8.3:66941197-66941216 | None:intergenic | 15.0% |
| !!! | TAATTTTCACATATTAATTG+CGG | - | chr8.3:66941990-66942009 | None:intergenic | 15.0% |
| !! | AAAAAACTAATTGTTTGTGA+AGG | - | chr8.3:66941163-66941182 | None:intergenic | 20.0% |
| !! | AATCTTCTCTAATTAGAAAT+AGG | - | chr8.3:66942807-66942826 | None:intergenic | 20.0% |
| !! | AATTTAACGGTGATTATATT+TGG | + | chr8.3:66941653-66941672 | MS.gene068369:intron | 20.0% |
| !! | ACTGAGATAAACAAATTTAA+CGG | + | chr8.3:66941640-66941659 | MS.gene068369:intron | 20.0% |
| !! | TGTGCTAATTGATTAATTAA+TGG | + | chr8.3:66941130-66941149 | MS.gene068369:intron | 20.0% |
| !!! | ACTATTCAATCTTATTTAGA+AGG | - | chr8.3:66941525-66941544 | None:intergenic | 20.0% |
| !!! | CAAGATTCAAATTTTCATTT+GGG | + | chr8.3:66942551-66942570 | MS.gene068369:CDS | 20.0% |
| !!! | CTATTCAATCTTATTTAGAA+GGG | - | chr8.3:66941524-66941543 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | - | chr8.3:66942391-66942410 | None:intergenic | 20.0% |
| ! | ACTCATAAATCAGTAAACTA+AGG | + | chr8.3:66941871-66941890 | MS.gene068369:intron | 25.0% |
| ! | ATTAAAGAAATTCTTCCTCA+AGG | + | chr8.3:66942166-66942185 | MS.gene068369:CDS | 25.0% |
| ! | CCAAATGAAAATTTGAATCT+TGG | - | chr8.3:66942553-66942572 | None:intergenic | 25.0% |
| ! | CTCTAATTAGAAATAGGAAA+GGG | - | chr8.3:66942801-66942820 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.3:66942120-66942139 | MS.gene068369:CDS | 25.0% |
| ! | TAGTGTATATCCCAAATTTA+AGG | + | chr8.3:66941541-66941560 | MS.gene068369:intron | 25.0% |
| ! | TCTCTAATTAGAAATAGGAA+AGG | - | chr8.3:66942802-66942821 | None:intergenic | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.3:66942119-66942138 | MS.gene068369:CDS | 25.0% |
| ! | TGGAAATGTAAAATCATTCA+TGG | + | chr8.3:66941315-66941334 | MS.gene068369:intron | 25.0% |
| ! | TTAAAGAAATTCTTCCTCAA+GGG | + | chr8.3:66942167-66942186 | MS.gene068369:CDS | 25.0% |
| !! | ATCATTTTCTCCTTTTAACA+TGG | + | chr8.3:66941465-66941484 | MS.gene068369:intron | 25.0% |
| !! | CCAAGATTCAAATTTTCATT+TGG | + | chr8.3:66942550-66942569 | MS.gene068369:CDS | 25.0% |
| !!! | TTCTGTTGATTTCATAAACA+AGG | + | chr8.3:66941051-66941070 | MS.gene068369:CDS | 25.0% |
| AAGCACTAATAAACTGATCA+AGG | - | chr8.3:66942342-66942361 | None:intergenic | 30.0% | |
| ATGAGAAGTTGAATTGATGT+TGG | - | chr8.3:66941693-66941712 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.3:66942672-66942691 | None:intergenic | 30.0% | |
| GGAGAAAATGATTCATCTTT+AGG | - | chr8.3:66941457-66941476 | None:intergenic | 30.0% | |
| TCAGTGAAAATCAGAATGTT+CGG | - | chr8.3:66941625-66941644 | None:intergenic | 30.0% | |
| TGAGAAGTTGAATTGATGTT+GGG | - | chr8.3:66941692-66941711 | None:intergenic | 30.0% | |
| TTCATCCATTTAAGCAAGAA+CGG | - | chr8.3:66941287-66941306 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr8.3:66942433-66942452 | MS.gene068369:CDS | 30.0% | |
| ! | CACAAAATAAAAGCATAGCA+TGG | - | chr8.3:66941114-66941133 | None:intergenic | 30.0% |
| ! | CAGTTTATTAGTGCTTTTGA+TGG | + | chr8.3:66942346-66942365 | MS.gene068369:CDS | 30.0% |
| ! | CTTTGAAGAACCATGTTAAA+AGG | - | chr8.3:66941478-66941497 | None:intergenic | 30.0% |
| ! | GTCTATTTATTTCTCTCTCA+AGG | + | chr8.3:66941774-66941793 | MS.gene068369:intron | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr8.3:66942283-66942302 | MS.gene068369:CDS | 30.0% |
| !! | AATTGCGGTTCTAAATTAGT+TGG | - | chr8.3:66941975-66941994 | None:intergenic | 30.0% |
| !! | GCTAATGCACTGTATTTTAA+AGG | + | chr8.3:66942220-66942239 | MS.gene068369:CDS | 30.0% |
| !! | TTCTTTTGAGAAGAGATGTT+TGG | - | chr8.3:66940741-66940760 | None:intergenic | 30.0% |
| AAAAGAGTTGAGATGATCGA+TGG | - | chr8.3:66940879-66940898 | None:intergenic | 35.0% | |
| AAGTTGAATTGATGTTGGGA+AGG | - | chr8.3:66941688-66941707 | None:intergenic | 35.0% | |
| ACTATCAGCTATGGTTAAGA+AGG | + | chr8.3:66942456-66942475 | MS.gene068369:CDS | 35.0% | |
| ACTTGTTTACAAGGAAGCTT+GGG | - | chr8.3:66942508-66942527 | None:intergenic | 35.0% | |
| CATCCATATCCTAAAACTTC+TGG | + | chr8.3:66941385-66941404 | MS.gene068369:intron | 35.0% | |
| CATGGATAGCAATTGAAAGA+GGG | - | chr8.3:66941096-66941115 | None:intergenic | 35.0% | |
| CTTCGTCTTCCTTATAAACA+AGG | + | chr8.3:66942379-66942398 | MS.gene068369:CDS | 35.0% | |
| GCTATAAAGTCTATTCCAGT+TGG | - | chr8.3:66942772-66942791 | None:intergenic | 35.0% | |
| GGAAGACTTGTGAAATATGT+TGG | - | chr8.3:66942683-66942702 | None:intergenic | 35.0% | |
| GGAGTAATCCATTTCCTAAT+TGG | + | chr8.3:66942248-66942267 | MS.gene068369:CDS | 35.0% | |
| GTAAGCATTTAGTTGAGAGT+CGG | + | chr8.3:66941257-66941276 | MS.gene068369:intron | 35.0% | |
| GTAATCCATTTCCTAATTGG+AGG | + | chr8.3:66942251-66942270 | MS.gene068369:CDS | 35.0% | |
| GTACACCACACAAATATTCA+GGG | + | chr8.3:66941572-66941591 | MS.gene068369:intron | 35.0% | |
| TACACCACACAAATATTCAG+GGG | + | chr8.3:66941573-66941592 | MS.gene068369:intron | 35.0% | |
| TAGAAATAGGAAAGGGTGAT+CGG | - | chr8.3:66942794-66942813 | None:intergenic | 35.0% | |
| TATTTGCTTGTCCTCCAATT+AGG | - | chr8.3:66942265-66942284 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.3:66942576-66942595 | MS.gene068369:CDS | 35.0% | |
| TGTACACCACACAAATATTC+AGG | + | chr8.3:66941571-66941590 | MS.gene068369:intron | 35.0% | |
| ! | GATAGTCCATCTTTTGCATT+TGG | - | chr8.3:66942442-66942461 | None:intergenic | 35.0% |
| ! | GATGATCGATGGATTTGAAA+CGG | - | chr8.3:66940868-66940887 | None:intergenic | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | + | chr8.3:66942624-66942643 | MS.gene068369:CDS | 35.0% |
| !! | AAAAGATGGACTATCAGCTA+TGG | + | chr8.3:66942447-66942466 | MS.gene068369:CDS | 35.0% |
| !! | CACTGTATTTTAAAGGAGCA+TGG | + | chr8.3:66942227-66942246 | MS.gene068369:CDS | 35.0% |
| !! | TGATTCATCTTTAGGACACT+AGG | - | chr8.3:66941449-66941468 | None:intergenic | 35.0% |
| !!! | TAGCCAGAAGTTTTAGGATA+TGG | - | chr8.3:66941391-66941410 | None:intergenic | 35.0% |
| AGGTTCTCAATCCTCTTGTT+GGG | + | chr8.3:66942854-66942873 | MS.gene068369:CDS | 40.0% | |
| AGTTTACCTTTCTCTTCTGG+AGG | + | chr8.3:66942610-66942629 | MS.gene068369:CDS | 40.0% | |
| ATCACCCCTGAATATTTGTG+TGG | - | chr8.3:66941580-66941599 | None:intergenic | 40.0% | |
| ATCAGCTATGGTTAAGAAGG+TGG | + | chr8.3:66942459-66942478 | MS.gene068369:CDS | 40.0% | |
| CACTTGTTTACAAGGAAGCT+TGG | - | chr8.3:66942509-66942528 | None:intergenic | 40.0% | |
| CATTCATGGACCTGATGTAA+TGG | + | chr8.3:66941329-66941348 | MS.gene068369:intron | 40.0% | |
| CCTTGTAAACAAGTGAGAGT+GGG | + | chr8.3:66942514-66942533 | MS.gene068369:CDS | 40.0% | |
| CTTGTCCTCCAATTAGGAAA+TGG | - | chr8.3:66942259-66942278 | None:intergenic | 40.0% | |
| GAAAAGACGATGTTGTTGTC+TGG | - | chr8.3:66940764-66940783 | None:intergenic | 40.0% | |
| GAAATCAACAGAAGCAAGAG+TGG | - | chr8.3:66941044-66941063 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr8.3:66940993-66941012 | None:intergenic | 40.0% | |
| GAATTGATGTTGGGAAGGTA+GGG | - | chr8.3:66941683-66941702 | None:intergenic | 40.0% | |
| GCATGGATAGCAATTGAAAG+AGG | - | chr8.3:66941097-66941116 | None:intergenic | 40.0% | |
| GTCTTCCATTGAAGTAAACG+AGG | + | chr8.3:66942696-66942715 | MS.gene068369:CDS | 40.0% | |
| GTGAGTTTACCTTTCTCTTC+TGG | + | chr8.3:66942607-66942626 | MS.gene068369:CDS | 40.0% | |
| GTTCTCCGTTCTTGCTTAAA+TGG | + | chr8.3:66941279-66941298 | MS.gene068369:intron | 40.0% | |
| GTTGGACGCAATAAAACAAG+AGG | - | chr8.3:66941957-66941976 | None:intergenic | 40.0% | |
| TAAATGGATGAAGTGCGTGA+TGG | + | chr8.3:66941295-66941314 | MS.gene068369:intron | 40.0% | |
| TCAAGGTTGCTGCTCATAAA+AGG | - | chr8.3:66942325-66942344 | None:intergenic | 40.0% | |
| TCATTCCACTCCATTACATC+AGG | - | chr8.3:66941342-66941361 | None:intergenic | 40.0% | |
| TCCATTGAAGTAAACGAGGA+AGG | + | chr8.3:66942700-66942719 | MS.gene068369:CDS | 40.0% | |
| TCCTTGTAAACAAGTGAGAG+TGG | + | chr8.3:66942513-66942532 | MS.gene068369:CDS | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.3:66942583-66942602 | MS.gene068369:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr8.3:66940994-66941013 | None:intergenic | 40.0% | |
| TGAATTGATGTTGGGAAGGT+AGG | - | chr8.3:66941684-66941703 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.3:66942627-66942646 | MS.gene068369:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.3:66942139-66942158 | MS.gene068369:CDS | 40.0% | |
| ! | AACCGTGTCTACCGATTATA+AGG | + | chr8.3:66941018-66941037 | MS.gene068369:CDS | 40.0% |
| ! | ACCAACTAGCCAGAAGTTTT+AGG | - | chr8.3:66941397-66941416 | None:intergenic | 40.0% |
| ! | TCCTAAAACTTCTGGCTAGT+TGG | + | chr8.3:66941393-66941412 | MS.gene068369:intron | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.3:66942640-66942659 | MS.gene068369:CDS | 40.0% |
| !! | AGCAAGAGTGGCCTTATAAT+CGG | - | chr8.3:66941032-66941051 | None:intergenic | 40.0% |
| !!! | CAAGAAGCTGTTTTCGAGTA+CGG | - | chr8.3:66940838-66940857 | None:intergenic | 40.0% |
| AAGAGGATTGAGAACCTGTC+CGG | - | chr8.3:66942851-66942870 | None:intergenic | 45.0% | |
| ACACACCATTGGCAAAAGAG+AGG | - | chr8.3:66940958-66940977 | None:intergenic | 45.0% | |
| ACCCAAACGATCATCTTTGC+CGG | + | chr8.3:66942829-66942848 | MS.gene068369:CDS | 45.0% | |
| AGGACAACTTGGAGAGACAA+TGG | - | chr8.3:66940788-66940807 | None:intergenic | 45.0% | |
| CAATGATGCTGAGGACAACT+TGG | - | chr8.3:66940799-66940818 | None:intergenic | 45.0% | |
| CAGGTTCTCAATCCTCTTGT+TGG | + | chr8.3:66942853-66942872 | MS.gene068369:CDS | 45.0% | |
| CCCACTCTCACTTGTTTACA+AGG | - | chr8.3:66942517-66942536 | None:intergenic | 45.0% | |
| CTACAGCCAATGCTGGAATA+GGG | + | chr8.3:66942734-66942753 | MS.gene068369:CDS | 45.0% | |
| GCCTTCCTCGTTTACTTCAA+TGG | - | chr8.3:66942704-66942723 | None:intergenic | 45.0% | |
| GGTAGACACGGTTTCTTTGA+AGG | - | chr8.3:66941011-66941030 | None:intergenic | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | - | chr8.3:66942619-66942638 | None:intergenic | 45.0% | |
| TACAGCCAATGCTGGAATAG+GGG | + | chr8.3:66942735-66942754 | MS.gene068369:CDS | 45.0% | |
| TATTCCAGTTGGCACACACA+TGG | - | chr8.3:66942761-66942780 | None:intergenic | 45.0% | |
| TCCGGCAAAGATGATCGTTT+GGG | - | chr8.3:66942833-66942852 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.3:66940735-66940754 | None:intergenic | 45.0% | |
| ! | ATGGACCTGATGTAATGGAG+TGG | + | chr8.3:66941334-66941353 | MS.gene068369:intron | 45.0% |
| ! | CTCTTTTGCCAATGGTGTGT+GGG | + | chr8.3:66940958-66940977 | MS.gene068369:CDS | 45.0% |
| ! | CTTGGTTGGTGCTTTCATCA+AGG | - | chr8.3:66940697-66940716 | None:intergenic | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.3:66941007-66941026 | None:intergenic | 45.0% |
| ! | GATCGATGGATTTGAAACGG+AGG | - | chr8.3:66940865-66940884 | None:intergenic | 45.0% |
| ! | GGCCTTATAATCGGTAGACA+CGG | - | chr8.3:66941023-66941042 | None:intergenic | 45.0% |
| ! | TCTCTTTTGCCAATGGTGTG+TGG | + | chr8.3:66940957-66940976 | MS.gene068369:CDS | 45.0% |
| AAAAGAGAGGCGAGGACCAT+CGG | - | chr8.3:66940945-66940964 | None:intergenic | 50.0% | |
| AAAGACGCAGCTTCTTCCGA+TGG | + | chr8.3:66940926-66940945 | MS.gene068369:CDS | 50.0% | |
| AACGATCATCTTTGCCGGAC+AGG | + | chr8.3:66942834-66942853 | MS.gene068369:CDS | 50.0% | |
| AAGCTGTCAACTGACCCTTG+AGG | - | chr8.3:66942184-66942203 | None:intergenic | 50.0% | |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.3:66940730-66940749 | None:intergenic | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.3:66940729-66940748 | None:intergenic | 50.0% | |
| GAGGGAAACTTTCGCTTGGT+TGG | - | chr8.3:66940711-66940730 | None:intergenic | 50.0% | |
| GCTACAGCCAATGCTGGAAT+AGG | + | chr8.3:66942733-66942752 | MS.gene068369:CDS | 50.0% | |
| GTCCGGCAAAGATGATCGTT+TGG | - | chr8.3:66942834-66942853 | None:intergenic | 50.0% | |
| TACAAGGAAGCTTGGGCTCT+AGG | - | chr8.3:66942501-66942520 | None:intergenic | 50.0% | |
| TGACTGAGCTGCCATTCAGA+AGG | - | chr8.3:66942297-66942316 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACTTTCGCT+TGG | - | chr8.3:66940715-66940734 | None:intergenic | 50.0% | |
| TTTCTCCACCCACACACCAT+TGG | - | chr8.3:66940969-66940988 | None:intergenic | 50.0% | |
| ! | AAGAAGCTGCGTCTTTGAGG+AGG | - | chr8.3:66940922-66940941 | None:intergenic | 50.0% |
| ! | CGTCTTTGAGGAGGACAGAA+AGG | - | chr8.3:66940913-66940932 | None:intergenic | 50.0% |
| ! | TTTTGCCAATGGTGTGTGGG+TGG | + | chr8.3:66940961-66940980 | MS.gene068369:CDS | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+CGG | + | chr8.3:66940812-66940831 | MS.gene068369:CDS | 50.0% |
| AGCCAGCAGCAATGATGCTG+AGG | - | chr8.3:66940808-66940827 | None:intergenic | 55.0% | |
| CATGGCCCCTATTCCAGCAT+TGG | - | chr8.3:66942743-66942762 | None:intergenic | 55.0% | |
| CCATTGGCAAAAGAGAGGCG+AGG | - | chr8.3:66940953-66940972 | None:intergenic | 55.0% | |
| CGGAAGAAGCTGCGTCTTTG+AGG | - | chr8.3:66940925-66940944 | None:intergenic | 55.0% | |
| GAAGCTGCTACAGCCAATGC+TGG | + | chr8.3:66942727-66942746 | MS.gene068369:CDS | 55.0% | |
| GTCCTCAGCATCATTGCTGC+TGG | + | chr8.3:66940803-66940822 | MS.gene068369:CDS | 55.0% | |
| ! | CCTCGCCTCTCTTTTGCCAA+TGG | + | chr8.3:66940950-66940969 | MS.gene068369:CDS | 55.0% |
| GGGGCCATGTGTGTGCCAAC+TGG | + | chr8.3:66942754-66942773 | MS.gene068369:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 66940686 | 66942879 | 66940686 | ID=MS.gene068369 |
| chr8.3 | mRNA | 66940686 | 66942879 | 66940686 | ID=MS.gene068369.t1;Parent=MS.gene068369 |
| chr8.3 | exon | 66940686 | 66941072 | 66940686 | ID=MS.gene068369.t1.exon1;Parent=MS.gene068369.t1 |
| chr8.3 | CDS | 66940686 | 66941072 | 66940686 | ID=cds.MS.gene068369.t1;Parent=MS.gene068369.t1 |
| chr8.3 | exon | 66942109 | 66942879 | 66942109 | ID=MS.gene068369.t1.exon2;Parent=MS.gene068369.t1 |
| chr8.3 | CDS | 66942109 | 66942879 | 66942109 | ID=cds.MS.gene068369.t1;Parent=MS.gene068369.t1 |
| Gene Sequence |
| Protein sequence |
