Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068386.t1 | KEH31818.1 | 97.4 | 191 | 5 | 0 | 1 | 191 | 1 | 191 | 1.10E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068386.t1 | Q9ZRD6 | 88.0 | 184 | 22 | 0 | 1 | 184 | 1 | 184 | 5.8e-87 | 321.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068386.t1 | A0A072URY4 | 97.4 | 191 | 5 | 0 | 1 | 191 | 1 | 191 | 8.1e-98 | 365.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060322 | MS.gene068386 | 0.813532 | 2.44E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068386.t1 | MTR_4g105490 | 97.382 | 191 | 5 | 0 | 1 | 191 | 1 | 191 | 9.34e-140 | 387 |
| MS.gene068386.t1 | MTR_4g105490 | 96.739 | 184 | 6 | 0 | 1 | 184 | 1 | 184 | 9.02e-134 | 372 |
| MS.gene068386.t1 | MTR_4g105490 | 91.848 | 184 | 6 | 1 | 1 | 184 | 1 | 175 | 2.22e-123 | 346 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068386.t1 | AT5G58060 | 88.043 | 184 | 22 | 0 | 1 | 184 | 1 | 184 | 5.17e-121 | 340 |
| MS.gene068386.t1 | AT5G58060 | 77.184 | 206 | 25 | 1 | 1 | 184 | 1 | 206 | 1.01e-111 | 318 |
| MS.gene068386.t1 | AT5G58180 | 75.806 | 186 | 41 | 2 | 1 | 184 | 1 | 184 | 1.42e-98 | 284 |
| MS.gene068386.t1 | AT5G58180 | 75.806 | 186 | 41 | 2 | 1 | 184 | 1 | 184 | 1.42e-98 | 284 |
Find 40 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGTGCAGTGGGATTTA+TGG | 0.204222 | 2.3:-929410 | MS.gene068386:CDS |
| TGTGAGAGCTTCATTCAAAT+AGG | 0.291898 | 2.3:+928079 | None:intergenic |
| GATGAGTATATTAAAAGTTT+TGG | 0.329342 | 2.3:-928146 | MS.gene068386:CDS |
| GTGAGAGCTTCATTCAAATA+GGG | 0.377006 | 2.3:+928080 | None:intergenic |
| AACAACTTATCAGCCTCTGC+AGG | 0.421700 | 2.3:+927874 | None:intergenic |
| TGAAGCTCTCACAAAATTCC+AGG | 0.436095 | 2.3:-928069 | MS.gene068386:intron |
| AGAGAAAACGCACTACGAAC+TGG | 0.440582 | 2.3:+929376 | None:intergenic |
| AACGATGAACTCTTTGACGC+TGG | 0.443526 | 2.3:+929762 | None:intergenic |
| TTGTTTCGTCCAACTCCCTC+TGG | 0.449194 | 2.3:+927845 | None:intergenic |
| GTGCATGCGTACAACAGAAA+TGG | 0.456788 | 2.3:-929433 | MS.gene068386:CDS |
| TGTAGCTAATCGTACTCCTC+AGG | 0.467563 | 2.3:-929725 | MS.gene068386:CDS |
| CATAGGCAAAGTCATAAAAC+AGG | 0.477535 | 2.3:+927103 | None:intergenic |
| CACCGGCGACGGTTCAGAAT+CGG | 0.497370 | 2.3:-929836 | MS.gene068386:CDS |
| TGATCTGAGTGCAGCATCGC+AGG | 0.501044 | 2.3:-927140 | MS.gene068386:CDS |
| TCTTGCACGAGGGGAGAAGC+TGG | 0.513834 | 2.3:-927185 | MS.gene068386:CDS |
| AATGAAGATCACGGCTCTGT+TGG | 0.533873 | 2.3:-929869 | MS.gene068386:CDS |
| TCGTGCAAGAACACTATCAA+TGG | 0.540783 | 2.3:+927198 | None:intergenic |
| GTTGAAAATCCAGAGGGAGT+TGG | 0.542352 | 2.3:-927854 | MS.gene068386:CDS |
| AGAAATGGACTTTGTGCAGT+GGG | 0.544952 | 2.3:-929418 | MS.gene068386:CDS |
| TTGATAGTGTTCTTGCACGA+GGG | 0.548647 | 2.3:-927195 | MS.gene068386:CDS |
| CAGAAATGGACTTTGTGCAG+TGG | 0.556323 | 2.3:-929419 | MS.gene068386:CDS |
| AAAGAAACCTTCGTGCTGAA+CGG | 0.561128 | 2.3:+929690 | None:intergenic |
| CACCGATTCTGAACCGTCGC+CGG | 0.567262 | 2.3:+929834 | None:intergenic |
| GCTTCCGATGTGAGTCACTT+CGG | 0.581854 | 2.3:-929799 | MS.gene068386:CDS |
| GCTTCATTCAAATAGGGCCA+TGG | 0.584327 | 2.3:+928086 | None:intergenic |
| CGATTCTGAACCGTCGCCGG+TGG | 0.585895 | 2.3:+929837 | None:intergenic |
| TGATAGTGTTCTTGCACGAG+GGG | 0.590135 | 2.3:-927194 | MS.gene068386:CDS |
| TGAATCGTGGAGAAGCACTC+AGG | 0.600979 | 2.3:-928123 | MS.gene068386:CDS |
| GTGCTAAAATCCACCGGCGA+CGG | 0.608951 | 2.3:-929847 | MS.gene068386:CDS |
| GTAGCTAATCGTACTCCTCA+GGG | 0.610974 | 2.3:-929724 | MS.gene068386:CDS |
| AAATCTCCAGGACCCTGCAG+AGG | 0.620458 | 2.3:-927887 | MS.gene068386:intron |
| CTGTTGGTGCTAAAATCCAC+CGG | 0.630376 | 2.3:-929853 | MS.gene068386:CDS |
| CGTCAATCCGTTCAGCACGA+AGG | 0.633012 | 2.3:-929697 | MS.gene068386:intron |
| ACAACTTATCAGCCTCTGCA+GGG | 0.636695 | 2.3:+927875 | None:intergenic |
| ATTGATAGTGTTCTTGCACG+AGG | 0.647666 | 2.3:-927196 | MS.gene068386:CDS |
| ACGGATTGACGCTGACCCTG+AGG | 0.664459 | 2.3:+929709 | None:intergenic |
| ATAAGTTGTTGAAAATCCAG+AGG | 0.667842 | 2.3:-927861 | MS.gene068386:CDS |
| TAAGTTGTTGAAAATCCAGA+GGG | 0.670033 | 2.3:-927860 | MS.gene068386:CDS |
| AGGAAGACAATACTCAACCA+TGG | 0.696331 | 2.3:-928103 | MS.gene068386:CDS |
| GTAACCGAAGTGACTCACAT+CGG | 0.736012 | 2.3:+929795 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTATATTGAATTA+TGG | + | chr2.3:927517-927536 | None:intergenic | 10.0% |
| !!! | CTTATTAGTAATTTAATTTA+TGG | - | chr2.3:928255-928274 | MS.gene068386:intron | 10.0% |
| !!! | TTTTCTCAAATTATTATTAA+AGG | + | chr2.3:927492-927511 | None:intergenic | 10.0% |
| !! | AATGAAATTATTGAAACAAT+TGG | - | chr2.3:928506-928525 | MS.gene068386:intron | 15.0% |
| !! | AATTGTTTCAATAATTTCAT+TGG | + | chr2.3:928507-928526 | None:intergenic | 15.0% |
| !! | TTTATTAATGTACATATACT+TGG | - | chr2.3:929522-929541 | MS.gene068386:intron | 15.0% |
| !!! | TATTTAATTGATTTACTAGA+TGG | - | chr2.3:928784-928803 | MS.gene068386:intron | 15.0% |
| !! | AATTTACTGAAGTTAACAAT+TGG | - | chr2.3:929241-929260 | MS.gene068386:intron | 20.0% |
| !! | AGCAGTTAAAATCTAAAAAT+TGG | + | chr2.3:928409-928428 | None:intergenic | 20.0% |
| !! | CAAATAGATATATCTTTAGA+TGG | - | chr2.3:929313-929332 | MS.gene068386:intron | 20.0% |
| !! | CAACTCATCATAATTAATTT+CGG | + | chr2.3:927438-927457 | None:intergenic | 20.0% |
| !! | CATCTAAAGATATATCTATT+TGG | + | chr2.3:929315-929334 | None:intergenic | 20.0% |
| !! | TGGTCATATTAAACTTAATT+TGG | - | chr2.3:929581-929600 | MS.gene068386:intron | 20.0% |
| !! | TTAATCCAACATATTCATAT+TGG | + | chr2.3:928476-928495 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTGTTTGAGATT+CGG | - | chr2.3:929280-929299 | MS.gene068386:intron | 20.0% |
| !!! | GATGAGTATATTAAAAGTTT+TGG | - | chr2.3:928836-928855 | MS.gene068386:intron | 20.0% |
| !!! | TACTAATAAGACATTAGTTT+AGG | + | chr2.3:928245-928264 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTGTAGAATACA+AGG | - | chr2.3:927527-927546 | MS.gene068386:intron | 20.0% |
| !!! | TGTTGAAATATTTTATGATG+TGG | + | chr2.3:928044-928063 | None:intergenic | 20.0% |
| !!! | TTCTTGATCTAGTATTTTTA+TGG | - | chr2.3:929606-929625 | MS.gene068386:intron | 20.0% |
| ! | CGAAATTAATTATGATGAGT+TGG | - | chr2.3:927436-927455 | MS.gene068386:intron | 25.0% |
| ! | CTAAAGTCAATATAATGAAG+AGG | + | chr2.3:928949-928968 | None:intergenic | 25.0% |
| ! | CTTATTAATGTACGTTTACT+TGG | - | chr2.3:929561-929580 | MS.gene068386:intron | 25.0% |
| ! | GATGAAGTTATCAAAATTGA+AGG | + | chr2.3:928652-928671 | None:intergenic | 25.0% |
| ! | GGATTTATATACCAAATACA+CGG | - | chr2.3:927457-927476 | MS.gene068386:intron | 25.0% |
| ! | TAGTACCAATATGAATATGT+TGG | - | chr2.3:928468-928487 | MS.gene068386:intron | 25.0% |
| !! | AAAAAGTGAAAAAGCATGAT+TGG | + | chr2.3:927332-927351 | None:intergenic | 25.0% |
| !! | ATTGAAACAATTGGTTAGTT+TGG | - | chr2.3:928515-928534 | MS.gene068386:intron | 25.0% |
| !! | TTTTATACAATTTATGCCTC+TGG | - | chr2.3:928104-928123 | MS.gene068386:CDS | 25.0% |
| !!! | ACTTTTTTCAAGTGAAACAT+GGG | + | chr2.3:927814-927833 | None:intergenic | 25.0% |
| !!! | CTAGTATTTTTATGGTGATT+GGG | - | chr2.3:929614-929633 | MS.gene068386:intron | 25.0% |
| !!! | TACTTTTTTCAAGTGAAACA+TGG | + | chr2.3:927815-927834 | None:intergenic | 25.0% |
| !!! | TCTAGTATTTTTATGGTGAT+TGG | - | chr2.3:929613-929632 | MS.gene068386:intron | 25.0% |
| !!! | TGATTATGTGTTTTTATGTC+TGG | - | chr2.3:927399-927418 | MS.gene068386:intron | 25.0% |
| !!! | TTTTTAGATTTTAACTGCTG+AGG | - | chr2.3:928410-928429 | MS.gene068386:intron | 25.0% |
| AATAAAATATGATGTCCTGC+AGG | - | chr2.3:928808-928827 | MS.gene068386:intron | 30.0% | |
| ACAAAACCAATAAAGTGAGA+AGG | + | chr2.3:929652-929671 | None:intergenic | 30.0% | |
| ATAAGTTGTTGAAAATCCAG+AGG | - | chr2.3:929121-929140 | MS.gene068386:intron | 30.0% | |
| ATTTAGAAGACAAAAGATGC+AGG | + | chr2.3:929224-929243 | None:intergenic | 30.0% | |
| ATTTGACAGGAACATAGAAT+GGG | + | chr2.3:929079-929098 | None:intergenic | 30.0% | |
| CATTCAAGAGCCAAATATAA+CGG | - | chr2.3:929364-929383 | MS.gene068386:intron | 30.0% | |
| CTTCGACATATAAAGACAAA+TGG | + | chr2.3:928699-928718 | None:intergenic | 30.0% | |
| GACAATAATCCATGACAAAA+TGG | + | chr2.3:928309-928328 | None:intergenic | 30.0% | |
| GCAAATCCAATCAAAATTGT+TGG | + | chr2.3:927944-927963 | None:intergenic | 30.0% | |
| GTCTGTATGTGATATATCAT+TGG | - | chr2.3:928610-928629 | MS.gene068386:intron | 30.0% | |
| GTGAAAAGTTATCATGTGAA+AGG | + | chr2.3:929049-929068 | None:intergenic | 30.0% | |
| TAAGTTGTTGAAAATCCAGA+GGG | - | chr2.3:929122-929141 | MS.gene068386:intron | 30.0% | |
| TAGATCATTTGTGTGTAATG+TGG | + | chr2.3:929719-929738 | None:intergenic | 30.0% | |
| TCATTTCCTTCTCACTTTAT+TGG | - | chr2.3:929643-929662 | MS.gene068386:intron | 30.0% | |
| TGATATATCACATACAGACA+TGG | + | chr2.3:928609-928628 | None:intergenic | 30.0% | |
| TTCTTTCTATTATCTCAGTG+CGG | - | chr2.3:927765-927784 | MS.gene068386:intron | 30.0% | |
| TTGCAATAGTCCGTTATATT+TGG | + | chr2.3:929377-929396 | None:intergenic | 30.0% | |
| TTTAGAAGACAAAAGATGCA+GGG | + | chr2.3:929223-929242 | None:intergenic | 30.0% | |
| ! | AGTTTAGGATCTCAAATCTT+CGG | + | chr2.3:928230-928249 | None:intergenic | 30.0% |
| !! | CTTTGTCCAACAATTTTGAT+TGG | - | chr2.3:927935-927954 | MS.gene068386:intron | 30.0% |
| !! | TTAAAAGTTTTGGTGAATCG+TGG | - | chr2.3:928846-928865 | MS.gene068386:intron | 30.0% |
| !! | TTATTTTTCCGTTACTTAGC+CGG | - | chr2.3:927863-927882 | MS.gene068386:CDS | 30.0% |
| !!! | ACAATTTTGATTGGATTTGC+CGG | - | chr2.3:927944-927963 | MS.gene068386:intron | 30.0% |
| !!! | CACTTTATTGGTTTTGTGTT+TGG | - | chr2.3:929655-929674 | MS.gene068386:intron | 30.0% |
| !!! | CTTTGTTTTCCATTTTGTCA+TGG | - | chr2.3:928297-928316 | MS.gene068386:intron | 30.0% |
| !!! | TTTAGGTGTTTTGCTGTTTT+CGG | - | chr2.3:927722-927741 | MS.gene068386:intron | 30.0% |
| !!! | TTTTGATAATGTCTGTCAGT+TGG | - | chr2.3:929435-929454 | MS.gene068386:CDS | 30.0% |
| AAATACTGCGTAGAGAGATA+TGG | - | chr2.3:928063-928082 | MS.gene068386:intron | 35.0% | |
| AAATCTACGACATCACATCA+CGG | + | chr2.3:929418-929437 | None:intergenic | 35.0% | |
| AATGGAGGAAAACAGATGTT+TGG | + | chr2.3:928681-928700 | None:intergenic | 35.0% | |
| ACGAGGAAGTTAGACAAAAT+TGG | + | chr2.3:928348-928367 | None:intergenic | 35.0% | |
| ATGCATGCTAAACACTTACA+AGG | + | chr2.3:929170-929189 | None:intergenic | 35.0% | |
| CGACATATAAAGACAAATGG+AGG | + | chr2.3:928696-928715 | None:intergenic | 35.0% | |
| CGAGGAAGTTAGACAAAATT+GGG | + | chr2.3:928347-928366 | None:intergenic | 35.0% | |
| GATTTGACAGGAACATAGAA+TGG | + | chr2.3:929080-929099 | None:intergenic | 35.0% | |
| GTGAGAGCTTCATTCAAATA+GGG | + | chr2.3:928905-928924 | None:intergenic | 35.0% | |
| TATATCACATACAGACATGG+TGG | + | chr2.3:928606-928625 | None:intergenic | 35.0% | |
| TCCAAAAATCATGTTGGACT+TGG | + | chr2.3:928205-928224 | None:intergenic | 35.0% | |
| TCGGTATCCAAAAATCATGT+TGG | + | chr2.3:928211-928230 | None:intergenic | 35.0% | |
| TGTGAGAGCTTCATTCAAAT+AGG | + | chr2.3:928906-928925 | None:intergenic | 35.0% | |
| TTGTTGGACAAAGCAAGTAA+TGG | + | chr2.3:927928-927947 | None:intergenic | 35.0% | |
| TTTGACAGGAACATAGAATG+GGG | + | chr2.3:929078-929097 | None:intergenic | 35.0% | |
| ! | AAAGAGTTCATCGTTTTCGT+AGG | - | chr2.3:927228-927247 | MS.gene068386:intron | 35.0% |
| ! | ACTGTGTATTGACACACTTT+AGG | - | chr2.3:928147-928166 | MS.gene068386:CDS | 35.0% |
| ! | CTTTAAGTTCCCGTATGTTT+GGG | - | chr2.3:928734-928753 | MS.gene068386:intron | 35.0% |
| ! | TCCAAGTCCAACATGATTTT+TGG | - | chr2.3:928201-928220 | MS.gene068386:intron | 35.0% |
| ! | TGTATTGACACACTTTAGGT+CGG | - | chr2.3:928151-928170 | MS.gene068386:CDS | 35.0% |
| !! | ATTGGTCATCGTTGATTTGA+CGG | + | chr2.3:928391-928410 | None:intergenic | 35.0% |
| !!! | CAATTTTGATTGGATTTGCC+GGG | - | chr2.3:927945-927964 | MS.gene068386:intron | 35.0% |
| !!! | TGATTTGACGGTTACTTTTG+CGG | + | chr2.3:928379-928398 | None:intergenic | 35.0% |
| AAAGAAACCTTCGTGCTGAA+CGG | + | chr2.3:927295-927314 | None:intergenic | 40.0% | |
| ACAAAGTACACCATGGTGAT+TGG | + | chr2.3:928017-928036 | None:intergenic | 40.0% | |
| ACTTTGTGCAGTGGGATTTA+TGG | - | chr2.3:927572-927591 | MS.gene068386:intron | 40.0% | |
| AGGAAGACAATACTCAACCA+TGG | - | chr2.3:928879-928898 | MS.gene068386:intron | 40.0% | |
| AGTTACCTTACCAATCACCA+TGG | - | chr2.3:928004-928023 | MS.gene068386:intron | 40.0% | |
| TATGTTCCTGTCAAATCTCC+AGG | - | chr2.3:929083-929102 | MS.gene068386:intron | 40.0% | |
| TCGTGCAAGAACACTATCAA+TGG | + | chr2.3:929787-929806 | None:intergenic | 40.0% | |
| TGAAGCTCTCACAAAATTCC+AGG | - | chr2.3:928913-928932 | MS.gene068386:intron | 40.0% | |
| TGGTACAACAAAGTACACCA+TGG | + | chr2.3:928024-928043 | None:intergenic | 40.0% | |
| TGTATTGCAACGCAGTATGT+GGG | - | chr2.3:929195-929214 | MS.gene068386:intron | 40.0% | |
| TTGACAGGAACATAGAATGG+GGG | + | chr2.3:929077-929096 | None:intergenic | 40.0% | |
| TTGTATTGCAACGCAGTATG+TGG | - | chr2.3:929194-929213 | MS.gene068386:intron | 40.0% | |
| ! | AACCTCGTGCTAAGCTTTTT+AGG | - | chr2.3:927705-927724 | MS.gene068386:intron | 40.0% |
| ! | AAGCTTTATCCCACTAAGTG+GGG | + | chr2.3:927889-927908 | None:intergenic | 40.0% |
| ! | AGAAATGGACTTTGTGCAGT+GGG | - | chr2.3:927564-927583 | MS.gene068386:intron | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | + | chr2.3:927890-927909 | None:intergenic | 40.0% |
| ! | GCTTTAAGTTCCCGTATGTT+TGG | - | chr2.3:928733-928752 | MS.gene068386:intron | 40.0% |
| ! | GTTTGTTTGAGATTCGGCAT+TGG | - | chr2.3:929286-929305 | MS.gene068386:intron | 40.0% |
| ! | TGCGTTTTCTCTTCTCAATC+AGG | - | chr2.3:927617-927636 | MS.gene068386:intron | 40.0% |
| ! | TGGTACTCTGCATGATTTTC+TGG | - | chr2.3:929675-929694 | MS.gene068386:intron | 40.0% |
| ! | TTGGCTCTTGAATGATGCTT+GGG | + | chr2.3:929358-929377 | None:intergenic | 40.0% |
| !! | ATTGATAGTGTTCTTGCACG+AGG | - | chr2.3:929786-929805 | MS.gene068386:CDS | 40.0% |
| !! | TTGATAGTGTTCTTGCACGA+GGG | - | chr2.3:929787-929806 | MS.gene068386:CDS | 40.0% |
| !! | TTTGGCTCTTGAATGATGCT+TGG | + | chr2.3:929359-929378 | None:intergenic | 40.0% |
| !!! | GATTTGACGGTTACTTTTGC+GGG | + | chr2.3:928378-928397 | None:intergenic | 40.0% |
| !!! | GATTTTAACTGCTGAGGTCA+AGG | - | chr2.3:928416-928435 | MS.gene068386:intron | 40.0% |
| !!! | TTGATGTTGTTTTTCCCCTG+TGG | - | chr2.3:928576-928595 | MS.gene068386:intron | 40.0% |
| AACAACTTATCAGCCTCTGC+AGG | + | chr2.3:929111-929130 | None:intergenic | 45.0% | |
| AACGATGAACTCTTTGACGC+TGG | + | chr2.3:927223-927242 | None:intergenic | 45.0% | |
| ACAACTTATCAGCCTCTGCA+GGG | + | chr2.3:929110-929129 | None:intergenic | 45.0% | |
| ACACCTAAACGTGAAATGCC+CGG | + | chr2.3:927966-927985 | None:intergenic | 45.0% | |
| AGAGAAAACGCACTACGAAC+TGG | + | chr2.3:927609-927628 | None:intergenic | 45.0% | |
| AGTATCCTCAGCAATACCAG+AGG | + | chr2.3:928123-928142 | None:intergenic | 45.0% | |
| ATACGGGAACTTAAAGCCGT+AGG | + | chr2.3:928730-928749 | None:intergenic | 45.0% | |
| CACCTAAAAAGCTTAGCACG+AGG | + | chr2.3:927710-927729 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAAGCT+TGG | - | chr2.3:927888-927907 | MS.gene068386:intron | 45.0% | |
| GCTTCATTCAAATAGGGCCA+TGG | + | chr2.3:928899-928918 | None:intergenic | 45.0% | |
| GTAACCGAAGTGACTCACAT+CGG | + | chr2.3:927190-927209 | None:intergenic | 45.0% | |
| GTACACCATGGTGATTGGTA+AGG | + | chr2.3:928012-928031 | None:intergenic | 45.0% | |
| GTAGCTAATCGTACTCCTCA+GGG | - | chr2.3:927258-927277 | MS.gene068386:intron | 45.0% | |
| GTGCATGCGTACAACAGAAA+TGG | - | chr2.3:927549-927568 | MS.gene068386:intron | 45.0% | |
| GTTGAAAATCCAGAGGGAGT+TGG | - | chr2.3:929128-929147 | MS.gene068386:intron | 45.0% | |
| TAAGTTCCCGTATGTTTGGG+TGG | - | chr2.3:928737-928756 | MS.gene068386:intron | 45.0% | |
| TCACATCACGGAGCTATGAA+AGG | + | chr2.3:929406-929425 | None:intergenic | 45.0% | |
| TGTAGCTAATCGTACTCCTC+AGG | - | chr2.3:927257-927276 | MS.gene068386:intron | 45.0% | |
| TTATCCGCCACCCAAACATA+CGG | + | chr2.3:928747-928766 | None:intergenic | 45.0% | |
| TTATGCCTCTGGTATTGCTG+AGG | - | chr2.3:928115-928134 | MS.gene068386:CDS | 45.0% | |
| ! | CAGAAATGGACTTTGTGCAG+TGG | - | chr2.3:927563-927582 | MS.gene068386:intron | 45.0% |
| ! | CCAAGCTTTATCCCACTAAG+TGG | + | chr2.3:927891-927910 | None:intergenic | 45.0% |
| ! | TGATAGTGTTCTTGCACGAG+GGG | - | chr2.3:929788-929807 | MS.gene068386:CDS | 45.0% |
| !! | CTGTTGGTGCTAAAATCCAC+CGG | - | chr2.3:927129-927148 | MS.gene068386:CDS | 45.0% |
| !! | TGAAGAGGCATTTACATGCC+TGG | + | chr2.3:928934-928953 | None:intergenic | 45.0% |
| !!! | TGTTTTGCTGTTTTCGGTCG+CGG | - | chr2.3:927728-927747 | MS.gene068386:intron | 45.0% |
| AGCTTCTTCAAGCTGAGCAG+AGG | + | chr2.3:928179-928198 | None:intergenic | 50.0% | |
| ATATGATGTCCTGCAGGTGC+TGG | - | chr2.3:928814-928833 | MS.gene068386:intron | 50.0% | |
| CTTCTTCAAGCTGAGCAGAG+GGG | + | chr2.3:928177-928196 | None:intergenic | 50.0% | |
| GCTTCCGATGTGAGTCACTT+CGG | - | chr2.3:927183-927202 | MS.gene068386:CDS | 50.0% | |
| GCTTCTTCAAGCTGAGCAGA+GGG | + | chr2.3:928178-928197 | None:intergenic | 50.0% | |
| GGCGTATGTGTCCGTGTATT+TGG | + | chr2.3:927471-927490 | None:intergenic | 50.0% | |
| TATACTCATCCAGCACCTGC+AGG | + | chr2.3:928826-928845 | None:intergenic | 50.0% | |
| TATCCGCCACCCAAACATAC+GGG | + | chr2.3:928746-928765 | None:intergenic | 50.0% | |
| TCTGCTCAGCTTGAAGAAGC+TGG | - | chr2.3:928178-928197 | MS.gene068386:intron | 50.0% | |
| TGTCGAAGCAACTCTGCCTA+CGG | - | chr2.3:928711-928730 | MS.gene068386:intron | 50.0% | |
| TTGCCGGGCATTTCACGTTT+AGG | - | chr2.3:927960-927979 | MS.gene068386:intron | 50.0% | |
| TTGTTTCGTCCAACTCCCTC+TGG | + | chr2.3:929140-929159 | None:intergenic | 50.0% | |
| TTTATCCCACTAAGTGGGGC+CGG | + | chr2.3:927885-927904 | None:intergenic | 50.0% | |
| ! | CTTTTGCGGGCATATTCACG+AGG | + | chr2.3:928365-928384 | None:intergenic | 50.0% |
| !! | TGAATCGTGGAGAAGCACTC+AGG | - | chr2.3:928859-928878 | MS.gene068386:intron | 50.0% |
| AAATCTCCAGGACCCTGCAG+AGG | - | chr2.3:929095-929114 | MS.gene068386:intron | 55.0% | |
| AAGTGGGGCCGGCTAAGTAA+CGG | + | chr2.3:927874-927893 | None:intergenic | 55.0% | |
| AGACATGGTGGCAAGCCACA+GGG | + | chr2.3:928594-928613 | None:intergenic | 55.0% | |
| CAGGGTCCTGGAGATTTGAC+AGG | + | chr2.3:929092-929111 | None:intergenic | 55.0% | |
| CGTCAATCCGTTCAGCACGA+AGG | - | chr2.3:927285-927304 | MS.gene068386:intron | 55.0% | |
| GTGCTAAAATCCACCGGCGA+CGG | - | chr2.3:927135-927154 | MS.gene068386:CDS | 55.0% | |
| GTTCCCGTATGTTTGGGTGG+CGG | - | chr2.3:928740-928759 | MS.gene068386:intron | 55.0% | |
| TGATCTGAGTGCAGCATCGC+AGG | - | chr2.3:929842-929861 | MS.gene068386:CDS | 55.0% | |
| ACTTAGCCGGCCCCACTTAG+TGG | - | chr2.3:927876-927895 | MS.gene068386:CDS | 60.0% | |
| CACCGGCGACGGTTCAGAAT+CGG | - | chr2.3:927146-927165 | MS.gene068386:CDS | 60.0% | |
| CAGACATGGTGGCAAGCCAC+AGG | + | chr2.3:928595-928614 | None:intergenic | 60.0% | |
| CTTAGCCGGCCCCACTTAGT+GGG | - | chr2.3:927877-927896 | MS.gene068386:CDS | 60.0% | |
| GACATGGTGGCAAGCCACAG+GGG | + | chr2.3:928593-928612 | None:intergenic | 60.0% | |
| TATCAGCCTCTGCAGGGTCC+TGG | + | chr2.3:929104-929123 | None:intergenic | 60.0% | |
| TCTTGCACGAGGGGAGAAGC+TGG | - | chr2.3:929797-929816 | MS.gene068386:CDS | 60.0% | |
| ! | ACGGATTGACGCTGACCCTG+AGG | + | chr2.3:927276-927295 | None:intergenic | 60.0% |
| !! | CACCGATTCTGAACCGTCGC+CGG | + | chr2.3:927151-927170 | None:intergenic | 60.0% |
| CGATTCTGAACCGTCGCCGG+TGG | + | chr2.3:927148-927167 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 927114 | 929890 | 927114 | ID=MS.gene068386 |
| chr2.3 | mRNA | 927114 | 929890 | 927114 | ID=MS.gene068386.t1;Parent=MS.gene068386 |
| chr2.3 | exon | 929698 | 929890 | 929698 | ID=MS.gene068386.t1.exon1;Parent=MS.gene068386.t1 |
| chr2.3 | CDS | 929698 | 929890 | 929698 | ID=cds.MS.gene068386.t1;Parent=MS.gene068386.t1 |
| chr2.3 | exon | 929366 | 929463 | 929366 | ID=MS.gene068386.t1.exon2;Parent=MS.gene068386.t1 |
| chr2.3 | CDS | 929366 | 929463 | 929366 | ID=cds.MS.gene068386.t1;Parent=MS.gene068386.t1 |
| chr2.3 | exon | 928070 | 928174 | 928070 | ID=MS.gene068386.t1.exon3;Parent=MS.gene068386.t1 |
| chr2.3 | CDS | 928070 | 928174 | 928070 | ID=cds.MS.gene068386.t1;Parent=MS.gene068386.t1 |
| chr2.3 | exon | 927834 | 927899 | 927834 | ID=MS.gene068386.t1.exon4;Parent=MS.gene068386.t1 |
| chr2.3 | CDS | 927834 | 927899 | 927834 | ID=cds.MS.gene068386.t1;Parent=MS.gene068386.t1 |
| chr2.3 | exon | 927114 | 927227 | 927114 | ID=MS.gene068386.t1.exon5;Parent=MS.gene068386.t1 |
| chr2.3 | CDS | 927114 | 927227 | 927114 | ID=cds.MS.gene068386.t1;Parent=MS.gene068386.t1 |
| Gene Sequence |
| Protein sequence |
