Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068793.t1 | XP_013464732.1 | 87.5 | 264 | 8 | 2 | 1 | 250 | 1 | 253 | 1.60E-128 | 468.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068793.t1 | P24805 | 36.2 | 149 | 80 | 2 | 1 | 135 | 1 | 148 | 6.2e-20 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068793.t1 | B7FHV5 | 87.5 | 264 | 8 | 2 | 1 | 250 | 1 | 253 | 1.2e-128 | 468.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059856 | MS.gene068793 | 0.848172 | 7.26E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068793.t1 | MTR_2g079670 | 87.500 | 264 | 8 | 2 | 1 | 250 | 1 | 253 | 4.45e-159 | 441 |
| MS.gene068793.t1 | MTR_2g079670 | 86.979 | 192 | 11 | 1 | 1 | 178 | 1 | 192 | 7.37e-110 | 315 |
| MS.gene068793.t1 | MTR_2g079670 | 84.536 | 194 | 5 | 2 | 71 | 250 | 22 | 204 | 2.89e-105 | 303 |
| MS.gene068793.t1 | MTR_2g013140 | 58.238 | 261 | 83 | 3 | 1 | 247 | 1 | 249 | 7.08e-99 | 289 |
| MS.gene068793.t1 | MTR_4g088955 | 53.435 | 262 | 96 | 3 | 1 | 247 | 64 | 314 | 1.09e-88 | 265 |
| MS.gene068793.t1 | MTR_2g013140 | 57.979 | 188 | 64 | 2 | 1 | 174 | 1 | 187 | 1.83e-65 | 202 |
| MS.gene068793.t1 | MTR_1g041380 | 41.985 | 262 | 118 | 6 | 1 | 244 | 1 | 246 | 1.21e-62 | 197 |
| MS.gene068793.t1 | MTR_1g102680 | 42.205 | 263 | 116 | 7 | 1 | 244 | 1 | 246 | 5.53e-62 | 195 |
| MS.gene068793.t1 | MTR_2g022520 | 36.885 | 244 | 120 | 8 | 1 | 227 | 1 | 227 | 5.34e-42 | 143 |
| MS.gene068793.t1 | MTR_4g117050 | 34.568 | 243 | 128 | 7 | 1 | 227 | 1 | 228 | 2.44e-41 | 142 |
| MS.gene068793.t1 | MTR_1g041380 | 40.206 | 194 | 95 | 4 | 1 | 178 | 1 | 189 | 8.55e-40 | 136 |
| MS.gene068793.t1 | MTR_4g117050 | 38.068 | 176 | 81 | 4 | 67 | 227 | 21 | 183 | 1.45e-34 | 123 |
| MS.gene068793.t1 | MTR_1g019625 | 75.926 | 54 | 6 | 1 | 99 | 145 | 14 | 67 | 2.34e-19 | 79.7 |
| MS.gene068793.t1 | MTR_7g059340 | 62.500 | 48 | 18 | 0 | 90 | 137 | 8 | 55 | 1.84e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068793.t1 | AT4G27450 | 70.656 | 259 | 50 | 3 | 1 | 244 | 1 | 248 | 1.82e-129 | 366 |
| MS.gene068793.t1 | AT3G15450 | 61.154 | 260 | 72 | 4 | 1 | 244 | 1 | 247 | 2.49e-109 | 315 |
| MS.gene068793.t1 | AT3G15450 | 61.053 | 190 | 56 | 3 | 1 | 174 | 1 | 188 | 5.35e-76 | 229 |
| MS.gene068793.t1 | AT3G15450 | 58.791 | 182 | 54 | 4 | 1 | 166 | 1 | 177 | 1.84e-65 | 202 |
| MS.gene068793.t1 | AT5G43830 | 42.966 | 263 | 115 | 6 | 1 | 244 | 1 | 247 | 1.04e-64 | 202 |
| MS.gene068793.t1 | AT3G22850 | 39.922 | 258 | 127 | 3 | 1 | 244 | 1 | 244 | 7.59e-60 | 189 |
| MS.gene068793.t1 | AT5G19140 | 37.860 | 243 | 119 | 7 | 1 | 227 | 1 | 227 | 1.30e-43 | 147 |
| MS.gene068793.t1 | AT5G19140 | 36.777 | 242 | 111 | 7 | 1 | 227 | 1 | 215 | 1.40e-38 | 134 |
| MS.gene068793.t1 | AT5G19140 | 42.222 | 180 | 76 | 4 | 63 | 227 | 25 | 191 | 4.73e-38 | 132 |
Find 56 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTTGATGAACAGAAAA+AGG | 0.221761 | 2.3:+33043861 | None:intergenic |
| ATGTTCTGATTGAAGCTTAT+AGG | 0.280969 | 2.3:-33043307 | MS.gene068793:intron |
| ACAACTTGATCTGGTGGATA+TGG | 0.300897 | 2.3:+33043266 | None:intergenic |
| TGACATATACTGCTTATTCT+TGG | 0.304694 | 2.3:-33043394 | MS.gene068793:CDS |
| TCCTTACTGAACAAGCAATA+TGG | 0.322158 | 2.3:-33043354 | MS.gene068793:intron |
| GACATATACTGCTTATTCTT+GGG | 0.337382 | 2.3:-33043393 | MS.gene068793:CDS |
| GCAGGGCTATTCAGCTCTTC+AGG | 0.347531 | 2.3:+33044014 | None:intergenic |
| TGGTGGATTGAAGTTGTATT+GGG | 0.352740 | 2.3:-33043070 | MS.gene068793:CDS |
| TTCATAGAACAAGTATTATC+AGG | 0.367478 | 2.3:+33043924 | None:intergenic |
| GATGTGTGGGGCCAACTTTA+AGG | 0.380784 | 2.3:-33042482 | MS.gene068793:CDS |
| TTTAAGCCTTTGTATGATGC+AGG | 0.380881 | 2.3:+33043996 | None:intergenic |
| AATACTTGTTCTATGAACTT+TGG | 0.381957 | 2.3:-33043918 | MS.gene068793:CDS |
| AACCCTCTTGTACAACATTA+AGG | 0.386014 | 2.3:+33043010 | None:intergenic |
| GTTGTTTATGACAGCACATA+TGG | 0.386283 | 2.3:-33043215 | MS.gene068793:CDS |
| TTGCTCCCATTCCATCCAAT+TGG | 0.404613 | 2.3:+33042411 | None:intergenic |
| ATGGTGGATTGAAGTTGTAT+TGG | 0.415848 | 2.3:-33043071 | MS.gene068793:CDS |
| CAAGTTGTTAAGGAACTTGA+TGG | 0.416575 | 2.3:-33043251 | MS.gene068793:CDS |
| TATTGGGGTATTGCCGCTGA+TGG | 0.425828 | 2.3:-33043054 | MS.gene068793:CDS |
| TCCACCAGATCAAGTTGTTA+AGG | 0.433324 | 2.3:-33043261 | MS.gene068793:CDS |
| AGAATTTCTTCAGAAAGCTT+AGG | 0.436367 | 2.3:+33043969 | None:intergenic |
| AGTTCCTTAACAACTTGATC+TGG | 0.448722 | 2.3:+33043257 | None:intergenic |
| ACCATATTGCTTGTTCAGTA+AGG | 0.461779 | 2.3:+33043353 | None:intergenic |
| GAACTTATCAACCTTAAAGT+TGG | 0.462511 | 2.3:+33042471 | None:intergenic |
| GTGAATCCAATTGGATGGAA+TGG | 0.469235 | 2.3:-33042417 | MS.gene068793:CDS |
| GTGGATGAGCAAGACCTTTG+TGG | 0.473208 | 2.3:+33044036 | None:intergenic |
| ATTGCCTTCAACTTGTTCAA+TGG | 0.480350 | 2.3:+33042529 | None:intergenic |
| GCATCCATTGAACAAGTTGA+AGG | 0.484376 | 2.3:-33042533 | MS.gene068793:CDS |
| ACTCCTTCACTGTCTATCCT+TGG | 0.503821 | 2.3:+33042505 | None:intergenic |
| TGAATCCAATTGGATGGAAT+GGG | 0.508806 | 2.3:-33042416 | MS.gene068793:CDS |
| TTTATGCAGGGTTCTGATGG+TGG | 0.519132 | 2.3:-33043087 | MS.gene068793:intron |
| TCCTTAACAACTTGATCTGG+TGG | 0.527113 | 2.3:+33043260 | None:intergenic |
| TTAAGCCTTTGTATGATGCA+GGG | 0.539695 | 2.3:+33043997 | None:intergenic |
| TGTATGTTTCATAGTGAAGG+AGG | 0.544867 | 2.3:-33042571 | MS.gene068793:CDS |
| GAGTTGGTAGTGAATCCAAT+TGG | 0.553165 | 2.3:-33042426 | MS.gene068793:CDS |
| ACATATACTGCTTATTCTTG+GGG | 0.555358 | 2.3:-33043392 | MS.gene068793:CDS |
| TGGTAGTGAATCCAATTGGA+TGG | 0.564629 | 2.3:-33042422 | MS.gene068793:CDS |
| ATTGGGGTATTGCCGCTGAT+GGG | 0.568391 | 2.3:-33043053 | MS.gene068793:CDS |
| GTCAACAGTATTCCTCGAGT+TGG | 0.573016 | 2.3:-33042442 | MS.gene068793:CDS |
| GGGTGTATGTTTCATAGTGA+AGG | 0.585970 | 2.3:-33042574 | MS.gene068793:CDS |
| GTGGATATGGACCACGGTCA+CGG | 0.586213 | 2.3:+33043279 | None:intergenic |
| GGGCTATTCAGCTCTTCAGG+TGG | 0.589074 | 2.3:+33044017 | None:intergenic |
| TGACCTTAATGTTGTACAAG+AGG | 0.595852 | 2.3:-33043013 | MS.gene068793:CDS |
| GGTGGATTGAAGTTGTATTG+GGG | 0.606006 | 2.3:-33043069 | MS.gene068793:CDS |
| GACAGTGAAGGAGTGATGTG+TGG | 0.622107 | 2.3:-33042496 | MS.gene068793:CDS |
| ACAGTGAAGGAGTGATGTGT+GGG | 0.629204 | 2.3:-33042495 | MS.gene068793:CDS |
| AATAGCCCTGCATCATACAA+AGG | 0.630008 | 2.3:-33044002 | MS.gene068793:CDS |
| TACCTGCTGGAAAAGAGCAA+AGG | 0.635485 | 2.3:+33042978 | None:intergenic |
| ACAAGTTGAAGGCAATGCCA+AGG | 0.645708 | 2.3:-33042522 | MS.gene068793:CDS |
| TGTGCTGTCATAAACAACAA+AGG | 0.658420 | 2.3:+33043220 | None:intergenic |
| TATAGGACACTCCGTGACCG+TGG | 0.676131 | 2.3:-33043290 | MS.gene068793:CDS |
| ATGCCAAGGATAGACAGTGA+AGG | 0.681425 | 2.3:-33042508 | MS.gene068793:CDS |
| GACCTTAATGTTGTACAAGA+GGG | 0.690369 | 2.3:-33043012 | MS.gene068793:CDS |
| TTGGATTCACTACCAACTCG+AGG | 0.697059 | 2.3:+33042430 | None:intergenic |
| GATCACAACAGACCCATCAG+CGG | 0.715155 | 2.3:+33043041 | None:intergenic |
| GATCTGGTGGATATGGACCA+CGG | 0.727078 | 2.3:+33043273 | None:intergenic |
| CAGTGAAGGAGTGATGTGTG+GGG | 0.800044 | 2.3:-33042494 | MS.gene068793:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTAACTCTAAATA+CGG | + | chr2.3:33043711-33043730 | None:intergenic | 10.0% |
| !!! | ATCAATTTTTCCAATAAAAA+AGG | + | chr2.3:33042901-33042920 | None:intergenic | 15.0% |
| !! | AAAACAAAATCTCTTCAATT+TGG | - | chr2.3:33043536-33043555 | MS.gene068793:intron | 20.0% |
| !! | TCCAACATAAAAGTTTAATA+CGG | - | chr2.3:33042812-33042831 | MS.gene068793:intron | 20.0% |
| !! | TTGTTTAGATCAATATGATA+CGG | - | chr2.3:33043670-33043689 | MS.gene068793:intron | 20.0% |
| !!! | ACATCTTAATTCCTTTTATA+AGG | - | chr2.3:33042779-33042798 | MS.gene068793:intron | 20.0% |
| !!! | AGATTTTGTTTTCAAGATAA+TGG | + | chr2.3:33043528-33043547 | None:intergenic | 20.0% |
| !!! | GATTTTGTTTTCAAGATAAT+GGG | + | chr2.3:33043527-33043546 | None:intergenic | 20.0% |
| ! | AATACTTGTTCTATGAACTT+TGG | - | chr2.3:33042537-33042556 | MS.gene068793:CDS | 25.0% |
| ! | AGAATTGTTAACAAAGAACA+TGG | + | chr2.3:33043312-33043331 | None:intergenic | 25.0% |
| ! | TTCATAGAACAAGTATTATC+AGG | + | chr2.3:33042534-33042553 | None:intergenic | 25.0% |
| !! | ACCGTATTAAACTTTTATGT+TGG | + | chr2.3:33042816-33042835 | None:intergenic | 25.0% |
| !! | TCCTTTTATAAGGATGAATT+CGG | - | chr2.3:33042789-33042808 | MS.gene068793:intron | 25.0% |
| !!! | ATGATGTTTGTTTTTTATGC+AGG | - | chr2.3:33043355-33043374 | MS.gene068793:CDS | 25.0% |
| !!! | TGATGTTTGTTTTTTATGCA+GGG | - | chr2.3:33043356-33043375 | MS.gene068793:CDS | 25.0% |
| !!! | TTTAGTACACCCTTTTTTTA+TGG | - | chr2.3:33042654-33042673 | MS.gene068793:intron | 25.0% |
| !!! | TTTTGAAATCATTGAATGCA+GGG | - | chr2.3:33043861-33043880 | MS.gene068793:intron | 25.0% |
| !!! | TTTTTGAAATCATTGAATGC+AGG | - | chr2.3:33043860-33043879 | MS.gene068793:intron | 25.0% |
| AACCTTTGATGAACAGAAAA+AGG | + | chr2.3:33042597-33042616 | None:intergenic | 30.0% | |
| AATTGATGTTACTGACCAAA+TGG | - | chr2.3:33042914-33042933 | MS.gene068793:intron | 30.0% | |
| ACATATACTGCTTATTCTTG+GGG | - | chr2.3:33043063-33043082 | MS.gene068793:CDS | 30.0% | |
| ACCGAATTCATCCTTATAAA+AGG | + | chr2.3:33042793-33042812 | None:intergenic | 30.0% | |
| AGAATTTCTTCAGAAAGCTT+AGG | + | chr2.3:33042489-33042508 | None:intergenic | 30.0% | |
| ATGTTATTAGTGCTAAGAGA+TGG | - | chr2.3:33043009-33043028 | MS.gene068793:CDS | 30.0% | |
| ATGTTCTGATTGAAGCTTAT+AGG | - | chr2.3:33043148-33043167 | MS.gene068793:intron | 30.0% | |
| ATTACATCATAACCAACATG+TGG | - | chr2.3:33043563-33043582 | MS.gene068793:intron | 30.0% | |
| CAAAGACGTGTATTATGTTA+CGG | - | chr2.3:33042856-33042875 | MS.gene068793:intron | 30.0% | |
| CACTTCAAACAAATTGTCAA+AGG | - | chr2.3:33043826-33043845 | MS.gene068793:intron | 30.0% | |
| GAACTTATCAACCTTAAAGT+TGG | + | chr2.3:33043987-33044006 | None:intergenic | 30.0% | |
| GACATATACTGCTTATTCTT+GGG | - | chr2.3:33043062-33043081 | MS.gene068793:CDS | 30.0% | |
| TAGATCAATATGATACGGTT+TGG | - | chr2.3:33043675-33043694 | MS.gene068793:intron | 30.0% | |
| TATAAGCTTCAATCAGAACA+TGG | + | chr2.3:33043149-33043168 | None:intergenic | 30.0% | |
| TCGTAGCAACCATAAAAAAA+GGG | + | chr2.3:33042666-33042685 | None:intergenic | 30.0% | |
| TGACATATACTGCTTATTCT+TGG | - | chr2.3:33043061-33043080 | MS.gene068793:CDS | 30.0% | |
| TTCGTAGCAACCATAAAAAA+AGG | + | chr2.3:33042667-33042686 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCAACCATGTTAT+TGG | + | chr2.3:33042971-33042990 | None:intergenic | 30.0% |
| !! | ATTTTTGCAGGTTGTTTTGT+GGG | - | chr2.3:33043033-33043052 | MS.gene068793:CDS | 30.0% |
| !! | TATTTTTGCAGGTTGTTTTG+TGG | - | chr2.3:33043032-33043051 | MS.gene068793:CDS | 30.0% |
| !!! | CAGTTGCATACCTTTTTTAT+TGG | - | chr2.3:33042888-33042907 | MS.gene068793:intron | 30.0% |
| AACCCTCTTGTACAACATTA+AGG | + | chr2.3:33043448-33043467 | None:intergenic | 35.0% | |
| AAGTGTCTGAGTCTCTAATT+TGG | + | chr2.3:33043811-33043830 | None:intergenic | 35.0% | |
| AATGATTGTTGGATCGAGAT+CGG | + | chr2.3:33043752-33043771 | None:intergenic | 35.0% | |
| ACCATATTGCTTGTTCAGTA+AGG | + | chr2.3:33043105-33043124 | None:intergenic | 35.0% | |
| AGTTCCTTAACAACTTGATC+TGG | + | chr2.3:33043201-33043220 | None:intergenic | 35.0% | |
| CAAAGAATCGCAATCATATG+TGG | - | chr2.3:33042732-33042751 | MS.gene068793:intron | 35.0% | |
| CAAGTTGTTAAGGAACTTGA+TGG | - | chr2.3:33043204-33043223 | MS.gene068793:CDS | 35.0% | |
| CGTAACATAATACACGTCTT+TGG | + | chr2.3:33042858-33042877 | None:intergenic | 35.0% | |
| GACCTTAATGTTGTACAAGA+GGG | - | chr2.3:33043443-33043462 | MS.gene068793:intron | 35.0% | |
| GCTAACACATCAATGATTGT+TGG | + | chr2.3:33043763-33043782 | None:intergenic | 35.0% | |
| GTTGTTTATGACAGCACATA+TGG | - | chr2.3:33043240-33043259 | MS.gene068793:CDS | 35.0% | |
| TCCTTACTGAACAAGCAATA+TGG | - | chr2.3:33043101-33043120 | MS.gene068793:intron | 35.0% | |
| TGAACAGAAAAAGGCTTATC+AGG | + | chr2.3:33042588-33042607 | None:intergenic | 35.0% | |
| TGAATCCAATTGGATGGAAT+GGG | - | chr2.3:33044039-33044058 | MS.gene068793:CDS | 35.0% | |
| TGACCTTAATGTTGTACAAG+AGG | - | chr2.3:33043442-33043461 | MS.gene068793:intron | 35.0% | |
| TGTATGTTTCATAGTGAAGG+AGG | - | chr2.3:33043884-33043903 | MS.gene068793:CDS | 35.0% | |
| TGTGCTGTCATAAACAACAA+AGG | + | chr2.3:33043238-33043257 | None:intergenic | 35.0% | |
| TTAAGCCTTTGTATGATGCA+GGG | + | chr2.3:33042461-33042480 | None:intergenic | 35.0% | |
| TTTAAGCCTTTGTATGATGC+AGG | + | chr2.3:33042462-33042481 | None:intergenic | 35.0% | |
| TTTAATACGGTATCAGAGTC+TGG | - | chr2.3:33042825-33042844 | MS.gene068793:intron | 35.0% | |
| ! | ACAAGCAATATGGTTTGTCA+AGG | - | chr2.3:33043111-33043130 | MS.gene068793:intron | 35.0% |
| ! | AGCCTTTTTCTGTTCATCAA+AGG | - | chr2.3:33042592-33042611 | MS.gene068793:CDS | 35.0% |
| ! | ATGTTGGCAATTTTCCACAA+AGG | - | chr2.3:33042405-33042424 | MS.gene068793:CDS | 35.0% |
| ! | ATTGCCTTCAACTTGTTCAA+TGG | + | chr2.3:33043929-33043948 | None:intergenic | 35.0% |
| ! | CAAGCAATATGGTTTGTCAA+GGG | - | chr2.3:33043112-33043131 | MS.gene068793:intron | 35.0% |
| !! | ATGGTGGATTGAAGTTGTAT+TGG | - | chr2.3:33043384-33043403 | MS.gene068793:CDS | 35.0% |
| !! | CTAAGAGATGGTATTTTTGC+AGG | - | chr2.3:33043021-33043040 | MS.gene068793:CDS | 35.0% |
| !! | TGGTGGATTGAAGTTGTATT+GGG | - | chr2.3:33043385-33043404 | MS.gene068793:CDS | 35.0% |
| !!! | TTTTTTATGCAGGGTTCTGA+TGG | - | chr2.3:33043365-33043384 | MS.gene068793:CDS | 35.0% |
| AATAGCCCTGCATCATACAA+AGG | - | chr2.3:33042453-33042472 | MS.gene068793:CDS | 40.0% | |
| ATTTGCTTGCGCCAATAACA+TGG | - | chr2.3:33042957-33042976 | MS.gene068793:intron | 40.0% | |
| CATCATAACCAACATGTGGT+TGG | - | chr2.3:33043567-33043586 | MS.gene068793:intron | 40.0% | |
| GCTAAACAATTGATACCTGC+TGG | + | chr2.3:33043493-33043512 | None:intergenic | 40.0% | |
| GGGTGTATGTTTCATAGTGA+AGG | - | chr2.3:33043881-33043900 | MS.gene068793:CDS | 40.0% | |
| GTGAATCCAATTGGATGGAA+TGG | - | chr2.3:33044038-33044057 | MS.gene068793:CDS | 40.0% | |
| TCCTTAACAACTTGATCTGG+TGG | + | chr2.3:33043198-33043217 | None:intergenic | 40.0% | |
| TGATGTTACTGACCAAATGG+CGG | - | chr2.3:33042917-33042936 | MS.gene068793:intron | 40.0% | |
| TGCATGCAATCTAAATCCCT+TGG | + | chr2.3:33043609-33043628 | None:intergenic | 40.0% | |
| ! | ACAACTTGATCTGGTGGATA+TGG | + | chr2.3:33043192-33043211 | None:intergenic | 40.0% |
| ! | GCATCCATTGAACAAGTTGA+AGG | - | chr2.3:33043922-33043941 | MS.gene068793:CDS | 40.0% |
| ! | TCCACCAGATCAAGTTGTTA+AGG | - | chr2.3:33043194-33043213 | MS.gene068793:intron | 40.0% |
| ! | TGGTAGTGAATCCAATTGGA+TGG | - | chr2.3:33044033-33044052 | MS.gene068793:CDS | 40.0% |
| !! | GAGTTGGTAGTGAATCCAAT+TGG | - | chr2.3:33044029-33044048 | MS.gene068793:CDS | 40.0% |
| !! | GGTGGATTGAAGTTGTATTG+GGG | - | chr2.3:33043386-33043405 | MS.gene068793:CDS | 40.0% |
| !!! | TGGAATTGTTTTTGCTGCAC+TGG | - | chr2.3:33043260-33043279 | MS.gene068793:CDS | 40.0% |
| ACAGTGAAGGAGTGATGTGT+GGG | - | chr2.3:33043960-33043979 | MS.gene068793:CDS | 45.0% | |
| ACTCCTTCACTGTCTATCCT+TGG | + | chr2.3:33043953-33043972 | None:intergenic | 45.0% | |
| ATGCCAAGGATAGACAGTGA+AGG | - | chr2.3:33043947-33043966 | MS.gene068793:CDS | 45.0% | |
| GTCAACAGTATTCCTCGAGT+TGG | - | chr2.3:33044013-33044032 | MS.gene068793:CDS | 45.0% | |
| TACCTGCTGGAAAAGAGCAA+AGG | + | chr2.3:33043480-33043499 | None:intergenic | 45.0% | |
| TTGCTCCCATTCCATCCAAT+TGG | + | chr2.3:33044047-33044066 | None:intergenic | 45.0% | |
| TTGGATTCACTACCAACTCG+AGG | + | chr2.3:33044028-33044047 | None:intergenic | 45.0% | |
| ! | ACAAGTTGAAGGCAATGCCA+AGG | - | chr2.3:33043933-33043952 | MS.gene068793:CDS | 45.0% |
| ! | ATCCTTTGCTCTTTTCCAGC+AGG | - | chr2.3:33043475-33043494 | MS.gene068793:intron | 45.0% |
| ! | TTTATGCAGGGTTCTGATGG+TGG | - | chr2.3:33043368-33043387 | MS.gene068793:CDS | 45.0% |
| CAGTGAAGGAGTGATGTGTG+GGG | - | chr2.3:33043961-33043980 | MS.gene068793:CDS | 50.0% | |
| GACAGTGAAGGAGTGATGTG+TGG | - | chr2.3:33043959-33043978 | MS.gene068793:CDS | 50.0% | |
| GATCACAACAGACCCATCAG+CGG | + | chr2.3:33043417-33043436 | None:intergenic | 50.0% | |
| GATGTGTGGGGCCAACTTTA+AGG | - | chr2.3:33043973-33043992 | MS.gene068793:CDS | 50.0% | |
| GTGGATGAGCAAGACCTTTG+TGG | + | chr2.3:33042422-33042441 | None:intergenic | 50.0% | |
| TCCGAGTGGTAAGACACCAA+GGG | - | chr2.3:33043590-33043609 | MS.gene068793:intron | 50.0% | |
| ! | GATCTGGTGGATATGGACCA+CGG | + | chr2.3:33043185-33043204 | None:intergenic | 50.0% |
| !! | ATTGGGGTATTGCCGCTGAT+GGG | - | chr2.3:33043402-33043421 | MS.gene068793:CDS | 50.0% |
| !! | GAGTACTGATCTCCGCCATT+TGG | + | chr2.3:33042932-33042951 | None:intergenic | 50.0% |
| !! | TATTGGGGTATTGCCGCTGA+TGG | - | chr2.3:33043401-33043420 | MS.gene068793:CDS | 50.0% |
| !! | TCCCTTGGTGTCTTACCACT+CGG | + | chr2.3:33043594-33043613 | None:intergenic | 50.0% |
| CACTCGGACCAACCACATGT+TGG | + | chr2.3:33043578-33043597 | None:intergenic | 55.0% | |
| GCAGGGCTATTCAGCTCTTC+AGG | + | chr2.3:33042444-33042463 | None:intergenic | 55.0% | |
| GGGCTATTCAGCTCTTCAGG+TGG | + | chr2.3:33042441-33042460 | None:intergenic | 55.0% | |
| GTCCGAGTGGTAAGACACCA+AGG | - | chr2.3:33043589-33043608 | MS.gene068793:intron | 55.0% | |
| GTGGATATGGACCACGGTCA+CGG | + | chr2.3:33043179-33043198 | None:intergenic | 55.0% | |
| TATAGGACACTCCGTGACCG+TGG | - | chr2.3:33043165-33043184 | MS.gene068793:intron | 55.0% | |
| ! | CAACATGTGGTTGGTCCGAG+TGG | - | chr2.3:33043576-33043595 | MS.gene068793:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 33042405 | 33044072 | 33042405 | ID=MS.gene068793 |
| chr2.3 | mRNA | 33042405 | 33044072 | 33042405 | ID=MS.gene068793.t1;Parent=MS.gene068793 |
| chr2.3 | exon | 33043864 | 33044072 | 33043864 | ID=MS.gene068793.t1.exon1;Parent=MS.gene068793.t1 |
| chr2.3 | CDS | 33043864 | 33044072 | 33043864 | ID=cds.MS.gene068793.t1;Parent=MS.gene068793.t1 |
| chr2.3 | exon | 33043355 | 33043434 | 33043355 | ID=MS.gene068793.t1.exon2;Parent=MS.gene068793.t1 |
| chr2.3 | CDS | 33043355 | 33043434 | 33043355 | ID=cds.MS.gene068793.t1;Parent=MS.gene068793.t1 |
| chr2.3 | exon | 33043196 | 33043314 | 33043196 | ID=MS.gene068793.t1.exon3;Parent=MS.gene068793.t1 |
| chr2.3 | CDS | 33043196 | 33043314 | 33043196 | ID=cds.MS.gene068793.t1;Parent=MS.gene068793.t1 |
| chr2.3 | exon | 33042981 | 33043100 | 33042981 | ID=MS.gene068793.t1.exon4;Parent=MS.gene068793.t1 |
| chr2.3 | CDS | 33042981 | 33043100 | 33042981 | ID=cds.MS.gene068793.t1;Parent=MS.gene068793.t1 |
| chr2.3 | exon | 33042405 | 33042629 | 33042405 | ID=MS.gene068793.t1.exon5;Parent=MS.gene068793.t1 |
| chr2.3 | CDS | 33042405 | 33042629 | 33042405 | ID=cds.MS.gene068793.t1;Parent=MS.gene068793.t1 |
| Gene Sequence |
| Protein sequence |
