Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06901.t1 | XP_003602277.1 | 90.6 | 416 | 39 | 0 | 1 | 416 | 1 | 416 | 4.00E-217 | 763.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06901.t1 | G7J7G7 | 90.6 | 416 | 39 | 0 | 1 | 416 | 1 | 416 | 2.9e-217 | 763.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053998 | MS.gene06901 | 0.80385 | 2.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06901.t1 | MTR_3g091770 | 93.750 | 416 | 26 | 0 | 1 | 416 | 1 | 416 | 0.0 | 787 |
| MS.gene06901.t1 | MTR_1g007840 | 52.792 | 394 | 153 | 11 | 42 | 416 | 42 | 421 | 5.92e-109 | 327 |
| MS.gene06901.t1 | MTR_7g117715 | 33.894 | 416 | 187 | 13 | 28 | 414 | 68 | 424 | 2.52e-58 | 196 |
| MS.gene06901.t1 | MTR_8g027430 | 33.708 | 356 | 185 | 13 | 88 | 416 | 41 | 372 | 1.23e-48 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06901.t1 | AT2G46550 | 41.509 | 265 | 115 | 5 | 156 | 412 | 20 | 252 | 8.16e-54 | 180 |
| MS.gene06901.t1 | AT2G46550 | 41.509 | 265 | 115 | 5 | 156 | 412 | 92 | 324 | 2.29e-52 | 178 |
| MS.gene06901.t1 | AT2G46550 | 41.509 | 265 | 115 | 5 | 156 | 412 | 160 | 392 | 1.21e-51 | 178 |
| MS.gene06901.t1 | AT1G01240 | 40.909 | 242 | 111 | 8 | 177 | 414 | 117 | 330 | 1.33e-32 | 125 |
| MS.gene06901.t1 | AT1G01240 | 40.909 | 242 | 111 | 8 | 177 | 414 | 117 | 330 | 1.33e-32 | 125 |
| MS.gene06901.t1 | AT1G01240 | 40.909 | 242 | 111 | 8 | 177 | 414 | 117 | 330 | 1.33e-32 | 125 |
| MS.gene06901.t1 | AT1G01240 | 40.909 | 242 | 111 | 8 | 177 | 414 | 117 | 330 | 1.33e-32 | 125 |
| MS.gene06901.t1 | AT1G01240 | 40.909 | 242 | 111 | 8 | 177 | 414 | 117 | 330 | 1.33e-32 | 125 |
Find 74 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGCTGGTTTACTTCT+TGG | 0.202469 | 3.2:-77166798 | MS.gene06901:CDS |
| TTTGATGATCTTTCTTATAT+TGG | 0.224529 | 3.2:-77169687 | MS.gene06901:CDS |
| GTCCTTCTGATCTTTCTTCT+TGG | 0.239340 | 3.2:+77169542 | None:intergenic |
| TCAGTCTTGCAGGAATAATT+TGG | 0.259923 | 3.2:+77169780 | None:intergenic |
| ATTCAATTAATGATCAAATT+CGG | 0.272962 | 3.2:-77169896 | MS.gene06901:CDS |
| TTCTATGCTGAATTTCTTGA+TGG | 0.282392 | 3.2:-77169747 | MS.gene06901:CDS |
| TCCTTCTGATCTTTCTTCTT+GGG | 0.301671 | 3.2:+77169543 | None:intergenic |
| CTGTGATGTTTCCAATTTCT+CGG | 0.308026 | 3.2:-77169490 | MS.gene06901:CDS |
| TTCAATTAATGATCAAATTC+GGG | 0.324422 | 3.2:-77169895 | MS.gene06901:CDS |
| CAGGATTTATTTGAGAATCT+TGG | 0.328624 | 3.2:+77167168 | None:intergenic |
| GATATGCTCCTTCTCGTTGT+AGG | 0.329509 | 3.2:+77167061 | None:intergenic |
| GCAGTGGGTTTAAGCCTTGC+TGG | 0.332793 | 3.2:-77166816 | MS.gene06901:CDS |
| TATTGGAAGTGATAATTTAT+CGG | 0.333273 | 3.2:-77169670 | MS.gene06901:CDS |
| TCCGGCCAGAGCAAAGATTC+TGG | 0.344971 | 3.2:-77167200 | MS.gene06901:CDS |
| GGAACCAAGCTCAGTCTTGC+AGG | 0.347496 | 3.2:+77169770 | None:intergenic |
| CTTATCAGAATTTCGATTAC+CGG | 0.352732 | 3.2:+77169854 | None:intergenic |
| ATCAAGAAATTCAGCATAGA+AGG | 0.355749 | 3.2:+77169749 | None:intergenic |
| GATGTCATTATTTACATTGA+AGG | 0.367238 | 3.2:+77166753 | None:intergenic |
| TGTAGCCACCATTTCATATC+TGG | 0.379942 | 3.2:+77169828 | None:intergenic |
| GGTTTAAGCCTTGCTGGTGC+TGG | 0.404695 | 3.2:-77166810 | MS.gene06901:CDS |
| TCTGGAACAACGCCTACTTC+TGG | 0.411020 | 3.2:-77169213 | MS.gene06901:CDS |
| CTTGATGGAAATGTCAAGAA+TGG | 0.416125 | 3.2:-77169732 | MS.gene06901:CDS |
| TTGATGGAAATGTCAAGAAT+GGG | 0.419864 | 3.2:-77169731 | MS.gene06901:CDS |
| AATGCCGCTGGTTATGCATC+TGG | 0.421397 | 3.2:-77169231 | MS.gene06901:CDS |
| GTGCTGGTTTACTTCTTGGT+TGG | 0.423182 | 3.2:-77166794 | MS.gene06901:CDS |
| GGGCCTTGGTGGCGCACTGC+TGG | 0.425344 | 3.2:-77169423 | MS.gene06901:CDS |
| TCAGTAATGCTGCTGTTCTC+AGG | 0.434062 | 3.2:+77167149 | None:intergenic |
| AGCAGTGCGCCACCAAGGCC+CGG | 0.441562 | 3.2:+77169425 | None:intergenic |
| TTACTTCTTGGTTGGACCAT+GGG | 0.448358 | 3.2:-77166786 | MS.gene06901:CDS |
| ACCAGAATCTTTGCTCTGGC+CGG | 0.456296 | 3.2:+77167199 | None:intergenic |
| ATAAGCTACCAGATATGAAA+TGG | 0.460867 | 3.2:-77169836 | MS.gene06901:CDS |
| TATTCCTGCAAGACTGAGCT+TGG | 0.462198 | 3.2:-77169774 | MS.gene06901:CDS |
| AAACGCTTAGGCTGAGGATG+AGG | 0.466545 | 3.2:+77169336 | None:intergenic |
| GAAGAAAGATCAGAAGGACT+TGG | 0.467901 | 3.2:-77169538 | MS.gene06901:CDS |
| AGATGCATAACCAGCGGCAT+TGG | 0.468321 | 3.2:+77169233 | None:intergenic |
| GAAATGAGAAACCCGGGCCT+TGG | 0.472773 | 3.2:-77169437 | MS.gene06901:CDS |
| TTTACTTCTTGGTTGGACCA+TGG | 0.487875 | 3.2:-77166787 | MS.gene06901:CDS |
| GCGGATTCAGTCTGCATGCC+CGG | 0.491743 | 3.2:-77169873 | MS.gene06901:CDS |
| ATGAGAAACCCGGGCCTTGG+TGG | 0.493894 | 3.2:-77169434 | MS.gene06901:CDS |
| TTAAACCAGAATCTTTGCTC+TGG | 0.498523 | 3.2:+77167195 | None:intergenic |
| CACTGCTGGTAAAGATGAGT+TGG | 0.498893 | 3.2:-77169409 | MS.gene06901:CDS |
| TTCTTGGTTGGACCATGGGA+TGG | 0.500107 | 3.2:-77166782 | MS.gene06901:CDS |
| TGATCATTAATTGAATTGCT+AGG | 0.503875 | 3.2:+77169903 | None:intergenic |
| TGTTTCTAAGTTGAAGGCAG+AGG | 0.515040 | 3.2:+77166964 | None:intergenic |
| TTAAACCAGAAAACTGAGAC+TGG | 0.528983 | 3.2:-77169261 | MS.gene06901:CDS |
| ACTGGTTCTTCCAATGCCGC+TGG | 0.541532 | 3.2:-77169243 | MS.gene06901:CDS |
| GCTACATGTGAAAAGCAACT+TGG | 0.542418 | 3.2:-77169811 | MS.gene06901:CDS |
| AATCTCTGATCAAAACGCTT+AGG | 0.546921 | 3.2:+77169324 | None:intergenic |
| TTATCAGAATTTCGATTACC+GGG | 0.547283 | 3.2:+77169855 | None:intergenic |
| GCAGTGCGCCACCAAGGCCC+GGG | 0.550264 | 3.2:+77169426 | None:intergenic |
| AAGAAAGATCAGAAGGACTT+GGG | 0.556919 | 3.2:-77169537 | MS.gene06901:CDS |
| TGAAAAGAACAGCCAGAAGT+AGG | 0.557563 | 3.2:+77169201 | None:intergenic |
| TTCTCAAACAAGAGCAAGAG+AGG | 0.562960 | 3.2:-77167105 | MS.gene06901:CDS |
| TGATCAAAACGCTTAGGCTG+AGG | 0.573801 | 3.2:+77169330 | None:intergenic |
| TTTGATCAGAGATTCTCAAA+GGG | 0.576152 | 3.2:-77169315 | MS.gene06901:CDS |
| AACGCTTAGGCTGAGGATGA+GGG | 0.577084 | 3.2:+77169337 | None:intergenic |
| TCCCAAGAAGAAAGATCAGA+AGG | 0.581602 | 3.2:-77169544 | MS.gene06901:CDS |
| TGCTAAATCTCTTTCCACAC+TGG | 0.583299 | 3.2:-77166929 | MS.gene06901:CDS |
| AACAGATCTCTGAGCAACAA+AGG | 0.593658 | 3.2:+77169383 | None:intergenic |
| AAAACGGCATCACATTTGAT+GGG | 0.595069 | 3.2:-77169459 | MS.gene06901:CDS |
| TTACCAGCAGTGCGCCACCA+AGG | 0.611001 | 3.2:+77169420 | None:intergenic |
| TCAAGTTGCATTCGCCAGTG+TGG | 0.614289 | 3.2:+77166915 | None:intergenic |
| TGATGGGAAATGAGAAACCC+GGG | 0.619313 | 3.2:-77169443 | MS.gene06901:CDS |
| TTGATGGGAAATGAGAAACC+CGG | 0.621036 | 3.2:-77169444 | MS.gene06901:CDS |
| GCAAGAAGCCTACAACGAGA+AGG | 0.635494 | 3.2:-77167069 | MS.gene06901:CDS |
| GAAGTAAACCAGCACCAGCA+AGG | 0.638132 | 3.2:+77166802 | None:intergenic |
| AGCTACCAGATATGAAATGG+TGG | 0.640041 | 3.2:-77169833 | MS.gene06901:CDS |
| TGATGGAAATGTCAAGAATG+GGG | 0.645416 | 3.2:-77169730 | MS.gene06901:CDS |
| TGAAGGAAACATCCATCCCA+TGG | 0.646722 | 3.2:+77166770 | None:intergenic |
| AACTCTTTGCATACAAACAG+TGG | 0.649203 | 3.2:-77167010 | MS.gene06901:CDS |
| AATTAATGATCAAATTCGGG+CGG | 0.649669 | 3.2:-77169892 | MS.gene06901:CDS |
| TGTGGAAAGAGATTTAGCAA+TGG | 0.650005 | 3.2:+77166933 | None:intergenic |
| TGTTCCAGATGCATAACCAG+CGG | 0.695980 | 3.2:+77169227 | None:intergenic |
| GTAGTAGGAGAGACATGATG+TGG | 0.764403 | 3.2:+77169639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATTAATGATCAAATT+CGG | - | chr3.2:77166816-77166835 | MS.gene06901:CDS | 15.0% |
| !! | AAATAAAAGAAAACAGGTAA+GGG | + | chr3.2:77168956-77168975 | None:intergenic | 20.0% |
| !! | AAATTTATTGTCAAACTATG+TGG | - | chr3.2:77169474-77169493 | MS.gene06901:CDS | 20.0% |
| !! | AACTAAAACTAGTGTAATAT+TGG | + | chr3.2:77168352-77168371 | None:intergenic | 20.0% |
| !! | AAGATCAATAACAAAAAATG+TGG | - | chr3.2:77169848-77169867 | MS.gene06901:CDS | 20.0% |
| !! | AATAAAGAAACAATGTTGAT+AGG | + | chr3.2:77169383-77169402 | None:intergenic | 20.0% |
| !! | AGATCAATAACAAAAAATGT+GGG | - | chr3.2:77169849-77169868 | MS.gene06901:CDS | 20.0% |
| !! | ATCATTTCTATATGTTAAAG+AGG | - | chr3.2:77169235-77169254 | MS.gene06901:CDS | 20.0% |
| !! | CAAAAAAATTAGTATCTGAT+TGG | - | chr3.2:77166783-77166802 | MS.gene06901:CDS | 20.0% |
| !! | TAAATAAAAGAAAACAGGTA+AGG | + | chr3.2:77168957-77168976 | None:intergenic | 20.0% |
| !! | TAAATATTCAAATCGTGATT+TGG | + | chr3.2:77169048-77169067 | None:intergenic | 20.0% |
| !! | TATAACGATTTATATCAACT+GGG | + | chr3.2:77168546-77168565 | None:intergenic | 20.0% |
| !! | TATTGGAAGTGATAATTTAT+CGG | - | chr3.2:77167042-77167061 | MS.gene06901:CDS | 20.0% |
| !! | TGTTTAACTGAATTTCTTTA+CGG | - | chr3.2:77167559-77167578 | MS.gene06901:intron | 20.0% |
| !! | TTCAATTAATGATCAAATTC+GGG | - | chr3.2:77166817-77166836 | MS.gene06901:CDS | 20.0% |
| !! | TTTAAATTATAAAACTGCCA+AGG | - | chr3.2:77167651-77167670 | MS.gene06901:intron | 20.0% |
| !!! | AAATTTAAGTTAGCATAATC+AGG | + | chr3.2:77169460-77169479 | None:intergenic | 20.0% |
| !!! | ATACTAATTTTTTTGGAATC+TGG | + | chr3.2:77166778-77166797 | None:intergenic | 20.0% |
| !!! | CAATCAGATACTAATTTTTT+TGG | + | chr3.2:77166785-77166804 | None:intergenic | 20.0% |
| !!! | CTGTTCTTTTATAAAAGAAA+TGG | + | chr3.2:77168741-77168760 | None:intergenic | 20.0% |
| !!! | GTGAGTTTTTCTAAATTTTA+AGG | - | chr3.2:77168178-77168197 | MS.gene06901:intron | 20.0% |
| !!! | TAATTTTAAATGTATAGAGC+TGG | - | chr3.2:77168106-77168125 | MS.gene06901:intron | 20.0% |
| !!! | TCATAATTACTAGTTTGAAT+GGG | - | chr3.2:77167839-77167858 | MS.gene06901:intron | 20.0% |
| !!! | TTCATAATTACTAGTTTGAA+TGG | - | chr3.2:77167838-77167857 | MS.gene06901:intron | 20.0% |
| !!! | TTTGATGATCTTTCTTATAT+TGG | - | chr3.2:77167025-77167044 | MS.gene06901:CDS | 20.0% |
| ! | AAGGAAAAACATATCTTTCA+AGG | + | chr3.2:77168244-77168263 | None:intergenic | 25.0% |
| ! | AATAACAAAAAATGTGGGAT+TGG | - | chr3.2:77169854-77169873 | MS.gene06901:CDS | 25.0% |
| ! | ACTAAGAATATCTTATCTCA+TGG | + | chr3.2:77168292-77168311 | None:intergenic | 25.0% |
| ! | AGATAAGATATTCTTAGTCA+TGG | - | chr3.2:77168294-77168313 | MS.gene06901:intron | 25.0% |
| ! | AGCAGTAAATAAAAGAAAAC+AGG | + | chr3.2:77168962-77168981 | None:intergenic | 25.0% |
| ! | AGTGAACTAGATGATATTAA+TGG | + | chr3.2:77169349-77169368 | None:intergenic | 25.0% |
| ! | ATTCAAAAACACATAACAGT+TGG | + | chr3.2:77167944-77167963 | None:intergenic | 25.0% |
| ! | ATTTCTATATGTTAAAGAGG+TGG | - | chr3.2:77169238-77169257 | MS.gene06901:CDS | 25.0% |
| ! | CTAAGAATATCTTATCTCAT+GGG | + | chr3.2:77168291-77168310 | None:intergenic | 25.0% |
| ! | GATATTAATGGTGAAAACAA+TGG | + | chr3.2:77169337-77169356 | None:intergenic | 25.0% |
| ! | GCATACAAAATGCAATTTAA+AGG | + | chr3.2:77168380-77168399 | None:intergenic | 25.0% |
| ! | GTATAACGATTTATATCAAC+TGG | + | chr3.2:77168547-77168566 | None:intergenic | 25.0% |
| ! | TAAGAATATCTTATCTCATG+GGG | + | chr3.2:77168290-77168309 | None:intergenic | 25.0% |
| ! | TAGTCATTTCTATATGCTAA+AGG | - | chr3.2:77169303-77169322 | MS.gene06901:CDS | 25.0% |
| ! | TCAAACTAGTAATTATGAAG+AGG | + | chr3.2:77167837-77167856 | None:intergenic | 25.0% |
| ! | TGATCATTAATTGAATTGCT+AGG | + | chr3.2:77166812-77166831 | None:intergenic | 25.0% |
| ! | TTTCTATATGTTAAAGAGGT+GGG | - | chr3.2:77169239-77169258 | MS.gene06901:CDS | 25.0% |
| !! | AGATGAGGCATTAATATAAT+GGG | - | chr3.2:77169175-77169194 | MS.gene06901:intron | 25.0% |
| !! | ATTAATATCATCTAGTTCAC+TGG | - | chr3.2:77169348-77169367 | MS.gene06901:CDS | 25.0% |
| !!! | ATTTTCAGATGTTGGTTTTT+TGG | - | chr3.2:77167198-77167217 | MS.gene06901:CDS | 25.0% |
| !!! | TGTTTTTGTTTCTAAGTTGA+AGG | + | chr3.2:77169757-77169776 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCATACATGTAGT+AGG | + | chr3.2:77167091-77167110 | None:intergenic | 25.0% |
| AAAATGAATTGAGATTCCTG+CGG | + | chr3.2:77168593-77168612 | None:intergenic | 30.0% | |
| AAAATTAAGTCTGTCGAACA+AGG | + | chr3.2:77168093-77168112 | None:intergenic | 30.0% | |
| AACTAGTAATTATGAAGAGG+CGG | + | chr3.2:77167834-77167853 | None:intergenic | 30.0% | |
| AAGAATATCTTATCTCATGG+GGG | + | chr3.2:77168289-77168308 | None:intergenic | 30.0% | |
| AATTAATGATCAAATTCGGG+CGG | - | chr3.2:77166820-77166839 | MS.gene06901:CDS | 30.0% | |
| AGCTATCTTCAAGTAATATG+AGG | - | chr3.2:77167804-77167823 | MS.gene06901:intron | 30.0% | |
| AGGATTCAAAAAGTCATTTC+AGG | - | chr3.2:77167533-77167552 | MS.gene06901:intron | 30.0% | |
| ATAAGCTACCAGATATGAAA+TGG | - | chr3.2:77166876-77166895 | MS.gene06901:CDS | 30.0% | |
| ATATGAATAGTGTGATTCAG+AGG | + | chr3.2:77168641-77168660 | None:intergenic | 30.0% | |
| ATCAAGAAATTCAGCATAGA+AGG | + | chr3.2:77166966-77166985 | None:intergenic | 30.0% | |
| ATCGTTATACGTATCTATTC+TGG | - | chr3.2:77168557-77168576 | MS.gene06901:intron | 30.0% | |
| CAGGATTTATTTGAGAATCT+TGG | + | chr3.2:77169547-77169566 | None:intergenic | 30.0% | |
| CTTATCAGAATTTCGATTAC+CGG | + | chr3.2:77166861-77166880 | None:intergenic | 30.0% | |
| CTTCAATGATGATTCTATCT+TGG | + | chr3.2:77168785-77168804 | None:intergenic | 30.0% | |
| GAGATCCAACAAAATTAACT+TGG | + | chr3.2:77168071-77168090 | None:intergenic | 30.0% | |
| TATGAATAGTGTGATTCAGA+GGG | + | chr3.2:77168640-77168659 | None:intergenic | 30.0% | |
| TCCTAATTAAATGACCATGA+AGG | + | chr3.2:77167610-77167629 | None:intergenic | 30.0% | |
| TTATCAGAATTTCGATTACC+GGG | + | chr3.2:77166860-77166879 | None:intergenic | 30.0% | |
| TTATGTTTCAGACGCTTATA+TGG | - | chr3.2:77168437-77168456 | MS.gene06901:intron | 30.0% | |
| TTATTCCATTGTTCATGAGA+CGG | - | chr3.2:77167705-77167724 | MS.gene06901:intron | 30.0% | |
| TTCTATGCTGAATTTCTTGA+TGG | - | chr3.2:77166965-77166984 | MS.gene06901:CDS | 30.0% | |
| TTGATGGAAATGTCAAGAAT+GGG | - | chr3.2:77166981-77167000 | MS.gene06901:CDS | 30.0% | |
| TTTGATCAGAGATTCTCAAA+GGG | - | chr3.2:77167397-77167416 | MS.gene06901:intron | 30.0% | |
| ! | AAACATTGATGACATTTGAC+AGG | - | chr3.2:77169122-77169141 | MS.gene06901:intron | 30.0% |
| ! | AGGCATTAATATAATGGGAT+AGG | - | chr3.2:77169180-77169199 | MS.gene06901:CDS | 30.0% |
| ! | ATCCAACAAAATTAACTTGG+TGG | + | chr3.2:77168068-77168087 | None:intergenic | 30.0% |
| ! | CATGAGTCTTTTCTTTAAAC+AGG | - | chr3.2:77169673-77169692 | MS.gene06901:CDS | 30.0% |
| ! | GAGATGAGGCATTAATATAA+TGG | - | chr3.2:77169174-77169193 | MS.gene06901:intron | 30.0% |
| ! | TTGAAGATAGCTAGCTTATT+TGG | + | chr3.2:77167796-77167815 | None:intergenic | 30.0% |
| ! | TTTTGATCAGAGATTCTCAA+AGG | - | chr3.2:77167396-77167415 | MS.gene06901:intron | 30.0% |
| !! | CTGAATTTTGACAAACTGAA+CGG | + | chr3.2:77169092-77169111 | None:intergenic | 30.0% |
| !! | TGTTTTTGAATTCCCATGAT+AGG | - | chr3.2:77167953-77167972 | MS.gene06901:intron | 30.0% |
| !!! | CTTTTTTATACCTCAGTACT+GGG | - | chr3.2:77167881-77167900 | MS.gene06901:intron | 30.0% |
| !!! | GGTGCTTATTTTTTAAAGCT+TGG | - | chr3.2:77167726-77167745 | MS.gene06901:intron | 30.0% |
| !!! | GTTTTCTGGTTTAAAGATGA+TGG | + | chr3.2:77167445-77167464 | None:intergenic | 30.0% |
| !!! | TTTTTTATACCTCAGTACTG+GGG | - | chr3.2:77167882-77167901 | MS.gene06901:intron | 30.0% |
| AAAAACGGCATCACATTTGA+TGG | - | chr3.2:77167252-77167271 | MS.gene06901:intron | 35.0% | |
| AAAACGGCATCACATTTGAT+GGG | - | chr3.2:77167253-77167272 | MS.gene06901:intron | 35.0% | |
| AAACAAGATAAGGCGACTAA+AGG | + | chr3.2:77168911-77168930 | None:intergenic | 35.0% | |
| AAATTCAGACCACCATTAAG+TGG | - | chr3.2:77167989-77168008 | MS.gene06901:intron | 35.0% | |
| AACAAGATAAGGCGACTAAA+GGG | + | chr3.2:77168910-77168929 | None:intergenic | 35.0% | |
| AACTCTTTGCATACAAACAG+TGG | - | chr3.2:77169702-77169721 | MS.gene06901:CDS | 35.0% | |
| AAGAAAGATCAGAAGGACTT+GGG | - | chr3.2:77167175-77167194 | MS.gene06901:CDS | 35.0% | |
| AATAGAGGGAAACAGTTAGA+AGG | - | chr3.2:77169152-77169171 | MS.gene06901:intron | 35.0% | |
| AATCTCTGATCAAAACGCTT+AGG | + | chr3.2:77167391-77167410 | None:intergenic | 35.0% | |
| AATTCAGACCACCATTAAGT+GGG | - | chr3.2:77167990-77168009 | MS.gene06901:intron | 35.0% | |
| ACCCAGGATAAGGATATTTA+TGG | - | chr3.2:77168040-77168059 | MS.gene06901:intron | 35.0% | |
| ACTAGTAATTATGAAGAGGC+GGG | + | chr3.2:77167833-77167852 | None:intergenic | 35.0% | |
| AGAATATCTTATCTCATGGG+GGG | + | chr3.2:77168288-77168307 | None:intergenic | 35.0% | |
| AGCATATAATGAGAAGAGAG+TGG | + | chr3.2:77168215-77168234 | None:intergenic | 35.0% | |
| AGTGTAATATTGGAGAACAG+TGG | + | chr3.2:77168342-77168361 | None:intergenic | 35.0% | |
| ATAACAGTTGGCTAAGTGAT+GGG | + | chr3.2:77167932-77167951 | None:intergenic | 35.0% | |
| CACCATCTTCAAACAAGATA+AGG | + | chr3.2:77168921-77168940 | None:intergenic | 35.0% | |
| CCAGGATAAGGATATTTATG+GGG | - | chr3.2:77168042-77168061 | MS.gene06901:intron | 35.0% | |
| CCCAGGATAAGGATATTTAT+GGG | - | chr3.2:77168041-77168060 | MS.gene06901:intron | 35.0% | |
| CCCATAAATATCCTTATCCT+GGG | + | chr3.2:77168044-77168063 | None:intergenic | 35.0% | |
| CTGTGATGTTTCCAATTTCT+CGG | - | chr3.2:77167222-77167241 | MS.gene06901:intron | 35.0% | |
| CTTGATGGAAATGTCAAGAA+TGG | - | chr3.2:77166980-77166999 | MS.gene06901:CDS | 35.0% | |
| GAAGTTGAAGTATGGAACAT+TGG | + | chr3.2:77167769-77167788 | None:intergenic | 35.0% | |
| GCATATAATGAGAAGAGAGT+GGG | + | chr3.2:77168214-77168233 | None:intergenic | 35.0% | |
| GCCTTCATGGTCATTTAATT+AGG | - | chr3.2:77167606-77167625 | MS.gene06901:intron | 35.0% | |
| GGAAAAAAACACTGTAGGAA+GGG | + | chr3.2:77168833-77168852 | None:intergenic | 35.0% | |
| TCAGTCTTGCAGGAATAATT+TGG | + | chr3.2:77166935-77166954 | None:intergenic | 35.0% | |
| TCCTTCTGATCTTTCTTCTT+GGG | + | chr3.2:77167172-77167191 | None:intergenic | 35.0% | |
| TGATGGAAATGTCAAGAATG+GGG | - | chr3.2:77166982-77167001 | MS.gene06901:CDS | 35.0% | |
| TGCAAAACACTGTTTAGACA+GGG | + | chr3.2:77168858-77168877 | None:intergenic | 35.0% | |
| TGCAAGAATGCGAAAAATTG+AGG | - | chr3.2:77167117-77167136 | MS.gene06901:CDS | 35.0% | |
| TGTGGAAAGAGATTTAGCAA+TGG | + | chr3.2:77169782-77169801 | None:intergenic | 35.0% | |
| TTAAACCAGAAAACTGAGAC+TGG | - | chr3.2:77167451-77167470 | MS.gene06901:intron | 35.0% | |
| TTAAACCAGAATCTTTGCTC+TGG | + | chr3.2:77169520-77169539 | None:intergenic | 35.0% | |
| TTCATATTCTGCTGTATGTG+CGG | - | chr3.2:77168654-77168673 | MS.gene06901:intron | 35.0% | |
| TTTCTCGGTCTCAGAAAAAA+CGG | - | chr3.2:77167237-77167256 | MS.gene06901:intron | 35.0% | |
| ! | ACCATGAAGGCATATATTAC+AGG | + | chr3.2:77167597-77167616 | None:intergenic | 35.0% |
| ! | ATTTTCTTCGATCTACGGTT+TGG | - | chr3.2:77169010-77169029 | MS.gene06901:intron | 35.0% |
| ! | CCAGTACTGAGGTATAAAAA+AGG | + | chr3.2:77167883-77167902 | None:intergenic | 35.0% |
| ! | CCATGAAGGCATATATTACA+GGG | + | chr3.2:77167596-77167615 | None:intergenic | 35.0% |
| ! | TAACATGCCTTTAAGAAACC+AGG | + | chr3.2:77168705-77168724 | None:intergenic | 35.0% |
| !! | CGCTTATTTTCTTCGATCTA+CGG | - | chr3.2:77169005-77169024 | MS.gene06901:intron | 35.0% |
| !! | TTGGCTTTGAAGTTGAAGTA+TGG | + | chr3.2:77167777-77167796 | None:intergenic | 35.0% |
| !!! | CCTTTTTTATACCTCAGTAC+TGG | - | chr3.2:77167880-77167899 | MS.gene06901:intron | 35.0% |
| !!! | TTTTTCTGAGACCGAGAAAT+TGG | + | chr3.2:77167236-77167255 | None:intergenic | 35.0% |
| AAAACACTGTTTAGACAGGG+TGG | + | chr3.2:77168855-77168874 | None:intergenic | 40.0% | |
| AAACACTGTTTAGACAGGGT+GGG | + | chr3.2:77168854-77168873 | None:intergenic | 40.0% | |
| AACAGATCTCTGAGCAACAA+AGG | + | chr3.2:77167332-77167351 | None:intergenic | 40.0% | |
| AAGGGGGAAAAAAATGGAGA+AGG | + | chr3.2:77168892-77168911 | None:intergenic | 40.0% | |
| AATGGAATGGCAAAGTCAGA+AGG | + | chr3.2:77168263-77168282 | None:intergenic | 40.0% | |
| ACAAGATAAGGCGACTAAAG+GGG | + | chr3.2:77168909-77168928 | None:intergenic | 40.0% | |
| ACGACAACTTTCTCCTATCA+TGG | + | chr3.2:77167969-77167988 | None:intergenic | 40.0% | |
| ACTGTTTCCCTCTATTACAC+AGG | + | chr3.2:77169148-77169167 | None:intergenic | 40.0% | |
| AGCTACCAGATATGAAATGG+TGG | - | chr3.2:77166879-77166898 | MS.gene06901:CDS | 40.0% | |
| ATAGAGCTGGTAACATATGC+AGG | - | chr3.2:77168119-77168138 | MS.gene06901:intron | 40.0% | |
| CATAACAGTTGGCTAAGTGA+TGG | + | chr3.2:77167933-77167952 | None:intergenic | 40.0% | |
| CCCCATAAATATCCTTATCC+TGG | + | chr3.2:77168045-77168064 | None:intergenic | 40.0% | |
| CCCTGTAATATATGCCTTCA+TGG | - | chr3.2:77167593-77167612 | MS.gene06901:intron | 40.0% | |
| CGACAACTTTCTCCTATCAT+GGG | + | chr3.2:77167968-77167987 | None:intergenic | 40.0% | |
| CGACTAAAGGGGGAAAAAAA+TGG | + | chr3.2:77168898-77168917 | None:intergenic | 40.0% | |
| GAAACAGTTAGAAGGAGATG+AGG | - | chr3.2:77169160-77169179 | MS.gene06901:intron | 40.0% | |
| GAAGAAAGATCAGAAGGACT+TGG | - | chr3.2:77167174-77167193 | MS.gene06901:CDS | 40.0% | |
| GATAGGTCACATTTGTCTAG+TGG | - | chr3.2:77169197-77169216 | MS.gene06901:CDS | 40.0% | |
| GCTACATGTGAAAAGCAACT+TGG | - | chr3.2:77166901-77166920 | MS.gene06901:CDS | 40.0% | |
| GGGAAAAAAACACTGTAGGA+AGG | + | chr3.2:77168834-77168853 | None:intergenic | 40.0% | |
| GTATGCCACCAAGATAAACA+AGG | - | chr3.2:77168394-77168413 | MS.gene06901:intron | 40.0% | |
| GTCCTTCTGATCTTTCTTCT+TGG | + | chr3.2:77167173-77167192 | None:intergenic | 40.0% | |
| GTGCAAAACACTGTTTAGAC+AGG | + | chr3.2:77168859-77168878 | None:intergenic | 40.0% | |
| TAGAGCTGGTAACATATGCA+GGG | - | chr3.2:77168120-77168139 | MS.gene06901:intron | 40.0% | |
| TCCCAAGAAGAAAGATCAGA+AGG | - | chr3.2:77167168-77167187 | MS.gene06901:CDS | 40.0% | |
| TGAAAAGAACAGCCAGAAGT+AGG | + | chr3.2:77167514-77167533 | None:intergenic | 40.0% | |
| TGAAGATGGTGCTCTTTCTT+TGG | - | chr3.2:77168930-77168949 | MS.gene06901:intron | 40.0% | |
| TGCTAAATCTCTTTCCACAC+TGG | - | chr3.2:77169783-77169802 | MS.gene06901:CDS | 40.0% | |
| TGTAGCCACCATTTCATATC+TGG | + | chr3.2:77166887-77166906 | None:intergenic | 40.0% | |
| TGTGAAACTTGTCTACGTCT+CGG | - | chr3.2:77167678-77167697 | MS.gene06901:intron | 40.0% | |
| TTACTTCTTGGTTGGACCAT+GGG | - | chr3.2:77169926-77169945 | MS.gene06901:CDS | 40.0% | |
| TTCTCAAACAAGAGCAAGAG+AGG | - | chr3.2:77169607-77169626 | MS.gene06901:CDS | 40.0% | |
| TTGATGGGAAATGAGAAACC+CGG | - | chr3.2:77167268-77167287 | MS.gene06901:intron | 40.0% | |
| TTTACTTCTTGGTTGGACCA+TGG | - | chr3.2:77169925-77169944 | MS.gene06901:CDS | 40.0% | |
| ! | AAGAACCAGTCTCAGTTTTC+TGG | + | chr3.2:77167459-77167478 | None:intergenic | 40.0% |
| ! | CGATCTACGGTTTGGAAATT+AGG | - | chr3.2:77169018-77169037 | MS.gene06901:intron | 40.0% |
| ! | CGCCTTATCTTGTTTGAAGA+TGG | - | chr3.2:77168916-77168935 | MS.gene06901:intron | 40.0% |
| ! | GACTTGGGATTTTCAGATGT+TGG | - | chr3.2:77167190-77167209 | MS.gene06901:CDS | 40.0% |
| ! | GGCCACCAAGTTAATTTTGT+TGG | - | chr3.2:77168063-77168082 | MS.gene06901:intron | 40.0% |
| ! | TCAACGCACCTTGTTTATCT+TGG | + | chr3.2:77168405-77168424 | None:intergenic | 40.0% |
| ! | TGTTTCTAAGTTGAAGGCAG+AGG | + | chr3.2:77169751-77169770 | None:intergenic | 40.0% |
| !! | TACTTCTGGCTGTTCTTTTC+AGG | - | chr3.2:77167513-77167532 | MS.gene06901:intron | 40.0% |
| AACTGAACGGCTGCAAATCA+TGG | + | chr3.2:77169079-77169098 | None:intergenic | 45.0% | |
| AATTCACTCATGGCTAACCC+AGG | - | chr3.2:77168024-77168043 | MS.gene06901:intron | 45.0% | |
| CAAGATAAGGCGACTAAAGG+GGG | + | chr3.2:77168908-77168927 | None:intergenic | 45.0% | |
| CACTGCTGGTAAAGATGAGT+TGG | - | chr3.2:77167303-77167322 | MS.gene06901:intron | 45.0% | |
| CTTATCTCATGGGGGGATAA+TGG | + | chr3.2:77168281-77168300 | None:intergenic | 45.0% | |
| GACAAGTTTCACAGTTGCCT+TGG | + | chr3.2:77167671-77167690 | None:intergenic | 45.0% | |
| GATATGCTCCTTCTCGTTGT+AGG | + | chr3.2:77169654-77169673 | None:intergenic | 45.0% | |
| GGGGAAAAAAATGGAGAAGG+AGG | + | chr3.2:77168889-77168908 | None:intergenic | 45.0% | |
| GGGTGGGAAAAAAACACTGT+AGG | + | chr3.2:77168838-77168857 | None:intergenic | 45.0% | |
| GTAGTAGGAGAGACATGATG+TGG | + | chr3.2:77167076-77167095 | None:intergenic | 45.0% | |
| GTGAAACTTGTCTACGTCTC+GGG | - | chr3.2:77167679-77167698 | MS.gene06901:intron | 45.0% | |
| GTTAAAGAGGTGGGAGTCAT+AGG | - | chr3.2:77169248-77169267 | MS.gene06901:CDS | 45.0% | |
| TATTCCTGCAAGACTGAGCT+TGG | - | chr3.2:77166938-77166957 | MS.gene06901:CDS | 45.0% | |
| TCAGTAATGCTGCTGTTCTC+AGG | + | chr3.2:77169566-77169585 | None:intergenic | 45.0% | |
| TCCTAGACCCAATTCACTCA+TGG | - | chr3.2:77168014-77168033 | MS.gene06901:intron | 45.0% | |
| TGAAGGAAACATCCATCCCA+TGG | + | chr3.2:77169945-77169964 | None:intergenic | 45.0% | |
| TGACAGGCCTGTGTAATAGA+GGG | - | chr3.2:77169138-77169157 | MS.gene06901:intron | 45.0% | |
| TGATCAAAACGCTTAGGCTG+AGG | + | chr3.2:77167385-77167404 | None:intergenic | 45.0% | |
| TGATGGGAAATGAGAAACCC+GGG | - | chr3.2:77167269-77167288 | MS.gene06901:intron | 45.0% | |
| TGTTCCAGATGCATAACCAG+CGG | + | chr3.2:77167488-77167507 | None:intergenic | 45.0% | |
| TTCTGGACATGAATTACCGC+AGG | - | chr3.2:77168574-77168593 | MS.gene06901:intron | 45.0% | |
| TTGACAGGCCTGTGTAATAG+AGG | - | chr3.2:77169137-77169156 | MS.gene06901:intron | 45.0% | |
| ! | AAGCACCGTCTCATGAACAA+TGG | + | chr3.2:77167713-77167732 | None:intergenic | 45.0% |
| ! | ACGCACCTTGTTTATCTTGG+TGG | + | chr3.2:77168402-77168421 | None:intergenic | 45.0% |
| ! | TCTAGGATCCCACTTAATGG+TGG | + | chr3.2:77168001-77168020 | None:intergenic | 45.0% |
| ! | TGCCTTTAAGAAACCAGGTG+CGG | + | chr3.2:77168700-77168719 | None:intergenic | 45.0% |
| ! | TTTATACCTCAGTACTGGGG+TGG | - | chr3.2:77167885-77167904 | MS.gene06901:intron | 45.0% |
| !! | AAACAAGGTGCGTTGACTGT+GGG | - | chr3.2:77168409-77168428 | MS.gene06901:intron | 45.0% |
| !! | GGGTTAGCCATGAGTGAATT+GGG | + | chr3.2:77168024-77168043 | None:intergenic | 45.0% |
| !! | GTGCTGGTTTACTTCTTGGT+TGG | - | chr3.2:77169918-77169937 | MS.gene06901:CDS | 45.0% |
| !! | TAAACAAGGTGCGTTGACTG+TGG | - | chr3.2:77168408-77168427 | MS.gene06901:intron | 45.0% |
| !! | TGGGTTAGCCATGAGTGAAT+TGG | + | chr3.2:77168025-77168044 | None:intergenic | 45.0% |
| !!! | ATGTGTCGTTGCTTTTGCAG+TGG | - | chr3.2:77169880-77169899 | MS.gene06901:CDS | 45.0% |
| !!! | TGTGTCGTTGCTTTTGCAGT+GGG | - | chr3.2:77169881-77169900 | MS.gene06901:CDS | 45.0% |
| AAACGCTTAGGCTGAGGATG+AGG | + | chr3.2:77167379-77167398 | None:intergenic | 50.0% | |
| AACGCTTAGGCTGAGGATGA+GGG | + | chr3.2:77167378-77167397 | None:intergenic | 50.0% | |
| ACCAGAATCTTTGCTCTGGC+CGG | + | chr3.2:77169516-77169535 | None:intergenic | 50.0% | |
| AGATGCATAACCAGCGGCAT+TGG | + | chr3.2:77167482-77167501 | None:intergenic | 50.0% | |
| CATAGGTCACATTGGTCGAG+TGG | - | chr3.2:77169265-77169284 | MS.gene06901:CDS | 50.0% | |
| CTCATGGCTAACCCAGGATA+AGG | - | chr3.2:77168030-77168049 | MS.gene06901:intron | 50.0% | |
| CTGTATGTGCGGCCTTGAAA+CGG | - | chr3.2:77168665-77168684 | MS.gene06901:intron | 50.0% | |
| GAAGTAAACCAGCACCAGCA+AGG | + | chr3.2:77169913-77169932 | None:intergenic | 50.0% | |
| GCAAGAAGCCTACAACGAGA+AGG | - | chr3.2:77169643-77169662 | MS.gene06901:CDS | 50.0% | |
| GCCATGAGTGAATTGGGTCT+AGG | + | chr3.2:77168018-77168037 | None:intergenic | 50.0% | |
| GTGGGAGTCATAGGTCACAT+TGG | - | chr3.2:77169257-77169276 | MS.gene06901:CDS | 50.0% | |
| TCATTACCACCCCAGTACTG+AGG | + | chr3.2:77167894-77167913 | None:intergenic | 50.0% | |
| TGGTTCTTCACGTCCAGTTC+CGG | - | chr3.2:77169494-77169513 | MS.gene06901:CDS | 50.0% | |
| TGTATGTGCGGCCTTGAAAC+GGG | - | chr3.2:77168666-77168685 | MS.gene06901:intron | 50.0% | |
| TTCTTGGTTGGACCATGGGA+TGG | - | chr3.2:77169930-77169949 | MS.gene06901:CDS | 50.0% | |
| ! | AATGCCGCTGGTTATGCATC+TGG | - | chr3.2:77167481-77167500 | MS.gene06901:intron | 50.0% |
| ! | CAGTTGGCTAAGTGATGGGA+AGG | + | chr3.2:77167928-77167947 | None:intergenic | 50.0% |
| ! | CCTTTAAGAAACCAGGTGCG+GGG | + | chr3.2:77168698-77168717 | None:intergenic | 50.0% |
| ! | GCCTTTAAGAAACCAGGTGC+GGG | + | chr3.2:77168699-77168718 | None:intergenic | 50.0% |
| ! | GGGTCTAGGATCCCACTTAA+TGG | + | chr3.2:77168004-77168023 | None:intergenic | 50.0% |
| ! | TCAAGTTGCATTCGCCAGTG+TGG | + | chr3.2:77169800-77169819 | None:intergenic | 50.0% |
| ! | TCTGGAACAACGCCTACTTC+TGG | - | chr3.2:77167499-77167518 | MS.gene06901:intron | 50.0% |
| !! | CTCATGGGGGGATAATGGAA+TGG | + | chr3.2:77168276-77168295 | None:intergenic | 50.0% |
| !! | GCTGGTGCTGGTTTACTTCT+TGG | - | chr3.2:77169914-77169933 | MS.gene06901:CDS | 50.0% |
| ATCTTTGCTCTGGCCGGAAC+TGG | + | chr3.2:77169510-77169529 | None:intergenic | 55.0% | |
| CCCCGCACCTGGTTTCTTAA+AGG | - | chr3.2:77168695-77168714 | MS.gene06901:intron | 55.0% | |
| GAAATGAGAAACCCGGGCCT+TGG | - | chr3.2:77167275-77167294 | MS.gene06901:intron | 55.0% | |
| GGAACCAAGCTCAGTCTTGC+AGG | + | chr3.2:77166945-77166964 | None:intergenic | 55.0% | |
| GGTTTAAGCCTTGCTGGTGC+TGG | - | chr3.2:77169902-77169921 | MS.gene06901:CDS | 55.0% | |
| TCCGGCCAGAGCAAAGATTC+TGG | - | chr3.2:77169512-77169531 | MS.gene06901:CDS | 55.0% | |
| ! | ACTGGTTCTTCCAATGCCGC+TGG | - | chr3.2:77167469-77167488 | MS.gene06901:intron | 55.0% |
| ! | GCAGTGGGTTTAAGCCTTGC+TGG | - | chr3.2:77169896-77169915 | MS.gene06901:CDS | 55.0% |
| AGAAACCAGGTGCGGGGACA+TGG | + | chr3.2:77168692-77168711 | None:intergenic | 60.0% | |
| ATGAGAAACCCGGGCCTTGG+TGG | - | chr3.2:77167278-77167297 | MS.gene06901:intron | 60.0% | |
| GCGGATTCAGTCTGCATGCC+CGG | - | chr3.2:77166839-77166858 | MS.gene06901:CDS | 60.0% | |
| TTACCAGCAGTGCGCCACCA+AGG | + | chr3.2:77167295-77167314 | None:intergenic | 60.0% | |
| CGGGGACATGGCCCGTTTCA+AGG | + | chr3.2:77168680-77168699 | None:intergenic | 65.0% | |
| AGCAGTGCGCCACCAAGGCC+CGG | + | chr3.2:77167290-77167309 | None:intergenic | 70.0% | |
| ACGGGCCATGTCCCCGCACC+TGG | - | chr3.2:77168684-77168703 | MS.gene06901:intron | 75.0% | |
| GCAGTGCGCCACCAAGGCCC+GGG | + | chr3.2:77167289-77167308 | None:intergenic | 75.0% | |
| !! | GGGCCTTGGTGGCGCACTGC+TGG | - | chr3.2:77167289-77167308 | MS.gene06901:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77166764 | 77169970 | 77166764 | ID=MS.gene06901 |
| chr3.2 | mRNA | 77166764 | 77169970 | 77166764 | ID=MS.gene06901.t1;Parent=MS.gene06901 |
| chr3.2 | exon | 77169180 | 77169970 | 77169180 | ID=MS.gene06901.t1.exon1;Parent=MS.gene06901.t1 |
| chr3.2 | CDS | 77169180 | 77169970 | 77169180 | ID=cds.MS.gene06901.t1;Parent=MS.gene06901.t1 |
| chr3.2 | exon | 77166764 | 77167223 | 77166764 | ID=MS.gene06901.t1.exon2;Parent=MS.gene06901.t1 |
| chr3.2 | CDS | 77166764 | 77167223 | 77166764 | ID=cds.MS.gene06901.t1;Parent=MS.gene06901.t1 |
| Gene Sequence |
| Protein sequence |
