AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069677

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069677.t1 MTR_6g075250 85.200 250 20 1 1 233 1 250 4.64e-149 415
MS.gene069677.t1 MTR_5g058150 66.802 247 62 2 1 228 1 246 4.95e-112 322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069677.t1 AT1G12650 59.195 174 69 2 56 228 73 245 1.97e-59 188
MS.gene069677.t1 AT1G12650 59.195 174 69 2 56 228 73 245 1.97e-59 188
MS.gene069677.t1 AT1G12650 59.195 174 69 2 56 228 73 245 1.97e-59 188
MS.gene069677.t1 AT1G12650 59.195 174 69 2 56 228 73 245 1.97e-59 188

Find 43 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATTGAGGCAGAGATTT+TGG 0.205412 6.1:+66998093 MS.gene069677:CDS
TTACATTTCTTGAGATAAAA+AGG 0.241645 6.1:-66998163 None:intergenic
TCAATATTTCTTGCTGAATC+AGG 0.263298 6.1:-66998079 None:intergenic
AAGCCTTTGCCTTCTGATTT+CGG 0.292375 6.1:-66999080 None:intergenic
TCTTCACCATTTCAGGCATC+TGG 0.316454 6.1:+66999221 MS.gene069677:intron
CCACAATGGGATTCAAATCT+TGG 0.346873 6.1:-66996826 None:intergenic
AGAATCAAGATCACCTTCTT+AGG 0.347988 6.1:-66996343 None:intergenic
TAGCATATGGCATAAATCTA+TGG 0.351847 6.1:-66999295 None:intergenic
TCGATTTCACTTCTGCGCTC+TGG 0.374526 6.1:-66997933 None:intergenic
GTGATCTACTTGACTCTAAT+CGG 0.442877 6.1:+66996848 MS.gene069677:CDS
GGACACAACAGACTCTTAAG+AGG 0.450885 6.1:+66997889 MS.gene069677:intron
AATGCTACCTTTCTTTCAGC+AGG 0.452734 6.1:-66997799 None:intergenic
AAGCTCGGAAGTGGAATTCC+AGG 0.460429 6.1:+66995821 MS.gene069677:CDS
TTCTTGCTACTAGCCTCCAT+TGG 0.466563 6.1:-66996286 None:intergenic
TTGCAGAACGCTCGATCTAA+CGG 0.468627 6.1:+66996020 MS.gene069677:CDS
GAGAAGAAAAGAAGTTGAAA+AGG 0.487279 6.1:+66996069 MS.gene069677:CDS
ACTCACATCATCTGATATGC+TGG 0.488167 6.1:-66995846 None:intergenic
GGAAGAGATATTGAAGGAGC+TGG 0.494183 6.1:+66995977 MS.gene069677:CDS
TGATCTTCCTGCTGAAAGAA+AGG 0.494790 6.1:+66997792 MS.gene069677:CDS
TGAAAAGGCTTAATAAGAAT+AGG 0.495942 6.1:+66996084 MS.gene069677:CDS
TGCAGAACGCTCGATCTAAC+GGG 0.496426 6.1:+66996021 MS.gene069677:CDS
AAATCGAAGAACTCGTATCA+TGG 0.500950 6.1:+66997949 MS.gene069677:CDS
GGAGGAGGAAGAGATATTGA+AGG 0.502071 6.1:+66995971 MS.gene069677:intron
CTGTCGACAGGTCTAGCATA+TGG 0.503882 6.1:-66999308 None:intergenic
GCTGGCTGATGTAACGTTTG+AGG 0.510830 6.1:+66995995 MS.gene069677:CDS
TCATCTGATATGCTGGAACC+TGG 0.511155 6.1:-66995839 None:intergenic
ACAGAGAGAAGCTGCAAAGG+AGG 0.511757 6.1:+66998132 MS.gene069677:CDS
GTCAAGTAGATCACCACAAT+GGG 0.514593 6.1:-66996839 None:intergenic
GAGACAGAGAGAAGCTGCAA+AGG 0.520096 6.1:+66998129 MS.gene069677:CDS
AAAATGAAGAAGCTCGGAAG+TGG 0.520702 6.1:+66995812 None:intergenic
CCTTGCTATTCGCTGTCGAC+AGG 0.523785 6.1:-66999320 None:intergenic
CAGCCGAAATCAGAAGGCAA+AGG 0.534211 6.1:+66999077 MS.gene069677:intron
TTTCTCAAAATGAAGAAGCT+CGG 0.540948 6.1:+66995806 None:intergenic
TGTCATCCATGCTCCTAAGA+AGG 0.547786 6.1:+66996330 MS.gene069677:CDS
CTAATGTTTGAATAGGCCAA+TGG 0.565708 6.1:+66996270 MS.gene069677:intron
AGATCACCTTCTTAGGAGCA+TGG 0.568351 6.1:-66996336 None:intergenic
CAGAGAGAAGCTGCAAAGGA+GGG 0.573288 6.1:+66998133 MS.gene069677:CDS
AAGGAAGAGAAATGCTGCAA+AGG 0.582512 6.1:+66999271 MS.gene069677:CDS
TGATTCAGCAAGAAATATTG+AGG 0.609034 6.1:+66998081 MS.gene069677:CDS
GACACAACAGACTCTTAAGA+GGG 0.634732 6.1:+66997890 MS.gene069677:intron
AGTCAAGTAGATCACCACAA+TGG 0.634966 6.1:-66996840 None:intergenic
ATGTTTGAATAGGCCAATGG+AGG 0.654355 6.1:+66996273 MS.gene069677:intron
CCAAGATTTGAATCCCATTG+TGG 0.675566 6.1:+66996826 MS.gene069677:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTGAAATAAATAATTAT+AGG - chr6.1:66998961-66998980 None:intergenic 10.0%
!! ATGTGAAATAAATAATTATA+GGG - chr6.1:66998960-66998979 None:intergenic 10.0%
!! ATAATTTCTAATGTTTGAAT+AGG + chr6.1:66996263-66996282 MS.gene069677:intron 15.0%
!! ATTCATATATTGAAAAAAGA+AGG + chr6.1:66999252-66999271 MS.gene069677:CDS 15.0%
!! TAAGGATTAATTTAAATCTT+GGG - chr6.1:66997164-66997183 None:intergenic 15.0%
!! TTAAGGATTAATTTAAATCT+TGG - chr6.1:66997165-66997184 None:intergenic 15.0%
!! TTTCCCTATAAAATAATTTA+CGG + chr6.1:66996597-66996616 MS.gene069677:intron 15.0%
!!! TATTTTGATTAGAAACTATT+CGG - chr6.1:66996519-66996538 None:intergenic 15.0%
!!! TCGAAATATTCAAATTTTAA+GGG + chr6.1:66996679-66996698 MS.gene069677:intron 15.0%
!!! TGTTGTATTAATGTTTTTTA+AGG - chr6.1:66997182-66997201 None:intergenic 15.0%
!!! TTCGAAATATTCAAATTTTA+AGG + chr6.1:66996678-66996697 MS.gene069677:intron 15.0%
!!! TTTTAAGCATTTTCATATAT+CGG + chr6.1:66996970-66996989 MS.gene069677:intron 15.0%
!! AAACATAGAAAATATCATCA+TGG - chr6.1:66997003-66997022 None:intergenic 20.0%
!! AAATAAACTATGCAAGTTAA+TGG - chr6.1:66996554-66996573 None:intergenic 20.0%
!! ATACAATTCTTTGAATTTGA+AGG + chr6.1:66998993-66999012 MS.gene069677:intron 20.0%
!! GCATTAATAATATAAGTACT+TGG + chr6.1:66997728-66997747 MS.gene069677:intron 20.0%
!! TGAAGAATAGATAGAATTAA+TGG - chr6.1:66999207-66999226 None:intergenic 20.0%
!! TTACATTTCTTGAGATAAAA+AGG - chr6.1:66998166-66998185 None:intergenic 20.0%
!! TTCCCTATAAAATAATTTAC+GGG + chr6.1:66996598-66996617 MS.gene069677:intron 20.0%
!! TTCTAATCAAAATAGTTTCA+TGG + chr6.1:66996525-66996544 MS.gene069677:intron 20.0%
!!! AACTTGCATAGTTTATTTTT+GGG + chr6.1:66996556-66996575 MS.gene069677:intron 20.0%
!!! ATCTTTCTGTTTTATATATC+TGG + chr6.1:66996750-66996769 MS.gene069677:intron 20.0%
!!! GCATTTAATTAGTTTCTATT+CGG + chr6.1:66998350-66998369 MS.gene069677:intron 20.0%
!!! TAACTTGCATAGTTTATTTT+TGG + chr6.1:66996555-66996574 MS.gene069677:intron 20.0%
!!! TATTTTAATTGCAATTGACA+TGG + chr6.1:66996943-66996962 MS.gene069677:intron 20.0%
!!! TTACATCATTTTTAGCTTTT+CGG + chr6.1:66998624-66998643 MS.gene069677:intron 20.0%
!!! TTATTGATTTTGATGATTGT+AGG + chr6.1:66995950-66995969 MS.gene069677:intron 20.0%
! AAACGCAAAAAATAAGCTTT+AGG + chr6.1:66998900-66998919 MS.gene069677:intron 25.0%
! AAATGAACACAACAAGAAAA+AGG - chr6.1:66996906-66996925 None:intergenic 25.0%
! ACTTATTGAGAATGTGTTAA+AGG + chr6.1:66997503-66997522 MS.gene069677:intron 25.0%
! TAATCAAAATAGTTTCATGG+AGG + chr6.1:66996528-66996547 MS.gene069677:intron 25.0%
! TGAAAAATATAAGCATCTCA+AGG + chr6.1:66999105-66999124 MS.gene069677:CDS 25.0%
! TGAAAAGGCTTAATAAGAAT+AGG + chr6.1:66996084-66996103 MS.gene069677:CDS 25.0%
!! ACACGTATAATAATCTTTTC+TGG + chr6.1:66997199-66997218 MS.gene069677:intron 25.0%
!! TCACATTTACATTTCTTTTC+AGG + chr6.1:66998042-66998061 MS.gene069677:intron 25.0%
!! TGTATAATTTAAAACACTCG+AGG - chr6.1:66997452-66997471 None:intergenic 25.0%
!!! AATTGATTTCATGTTTTGGT+TGG + chr6.1:66996371-66996390 MS.gene069677:intron 25.0%
!!! AGCCCGTAAATTATTTTATA+GGG - chr6.1:66996603-66996622 None:intergenic 25.0%
!!! CTTTTTTTGCGATACTTTTT+CGG - chr6.1:66998497-66998516 None:intergenic 25.0%
!!! GACAAATTGATTTCATGTTT+TGG + chr6.1:66996367-66996386 MS.gene069677:intron 25.0%
!!! GACAATTATTTTTAGTGCAT+AGG + chr6.1:66997623-66997642 MS.gene069677:intron 25.0%
AAGATTAAATGATGAGGAAG+AGG - chr6.1:66998193-66998212 None:intergenic 30.0%
AATTATACCTGCATTGTACT+TGG + chr6.1:66997675-66997694 MS.gene069677:intron 30.0%
ACATATTGAAAGTGAGAGTA+AGG - chr6.1:66998216-66998235 None:intergenic 30.0%
ACTAATAAATGTCACACTTC+TGG - chr6.1:66998014-66998033 None:intergenic 30.0%
AGAACTTGTAGGTTTACTAT+AGG + chr6.1:66998304-66998323 MS.gene069677:intron 30.0%
AGCATTCTAAATTGAGTGAT+TGG - chr6.1:66998711-66998730 None:intergenic 30.0%
AGTAATAGTTAGTGCATGTT+TGG + chr6.1:66996124-66996143 MS.gene069677:intron 30.0%
ATATAAGTACTTGGACTTAC+AGG + chr6.1:66997737-66997756 MS.gene069677:intron 30.0%
CAATCAATGGAATACATGTT+TGG - chr6.1:66996181-66996200 None:intergenic 30.0%
CAGAAAAGAATAATAGAGTC+GGG - chr6.1:66997268-66997287 None:intergenic 30.0%
CCAGAAAAGAATAATAGAGT+CGG - chr6.1:66997269-66997288 None:intergenic 30.0%
CTATTCGGTTAGATTAAGTT+GGG + chr6.1:66998365-66998384 MS.gene069677:intron 30.0%
GAGAAGAAAAGAAGTTGAAA+AGG + chr6.1:66996069-66996088 MS.gene069677:CDS 30.0%
GTAAGGAAGATTAAATGATG+AGG - chr6.1:66998199-66998218 None:intergenic 30.0%
GTTACAAACTTACTATGACA+TGG - chr6.1:66995921-66995940 None:intergenic 30.0%
TAAAATAATTTACGGGCTCA+TGG + chr6.1:66996605-66996624 MS.gene069677:intron 30.0%
TAAGAGCTAATGTTGAGAAT+TGG + chr6.1:66997078-66997097 MS.gene069677:intron 30.0%
TAATTTAAATCTTGGGACCA+TGG - chr6.1:66997157-66997176 None:intergenic 30.0%
TACTATAGGAGCAGAAAAAT+AGG + chr6.1:66998318-66998337 MS.gene069677:intron 30.0%
TAGCATATGGCATAAATCTA+TGG - chr6.1:66999298-66999317 None:intergenic 30.0%
TATCTATTCTTCACCATTTC+AGG + chr6.1:66999214-66999233 MS.gene069677:intron 30.0%
TCAATATTTCTTGCTGAATC+AGG - chr6.1:66998082-66998101 None:intergenic 30.0%
TCAGAAGACTTTACTACAAT+AGG - chr6.1:66997392-66997411 None:intergenic 30.0%
TCTATTCGGTTAGATTAAGT+TGG + chr6.1:66998364-66998383 MS.gene069677:intron 30.0%
TGATTCAGCAAGAAATATTG+AGG + chr6.1:66998081-66998100 MS.gene069677:CDS 30.0%
! AAATATTGAGGCAGAGATTT+TGG + chr6.1:66998093-66998112 MS.gene069677:CDS 30.0%
! CAGGATAAAGAATTTTTCTG+CGG - chr6.1:66997536-66997555 None:intergenic 30.0%
! GTAGTAAAGTCTTCTGATTT+TGG + chr6.1:66997395-66997414 MS.gene069677:intron 30.0%
! TAGCTAAGCATACTCTAAAA+TGG - chr6.1:66997027-66997046 None:intergenic 30.0%
! TCACTTAAAAGCATAGTGTT+AGG - chr6.1:66998822-66998841 None:intergenic 30.0%
!! AGTAGGTTTTGTCAAAATCA+TGG - chr6.1:66996427-66996446 None:intergenic 30.0%
!! GAGCCCGTAAATTATTTTAT+AGG - chr6.1:66996604-66996623 None:intergenic 30.0%
!! TTGATTTTGATGATTGTAGG+AGG + chr6.1:66995953-66995972 MS.gene069677:intron 30.0%
AAATCGAAGAACTCGTATCA+TGG + chr6.1:66997949-66997968 MS.gene069677:CDS 35.0%
AAGGGTTGTTCTATTTGATG+TGG + chr6.1:66996697-66996716 MS.gene069677:intron 35.0%
ACTCTAGCATATGGAAAATG+AGG - chr6.1:66998280-66998299 None:intergenic 35.0%
ACTGACACACCTAATTTCAT+AGG - chr6.1:66998441-66998460 None:intergenic 35.0%
AGAATCAAGATCACCTTCTT+AGG - chr6.1:66996346-66996365 None:intergenic 35.0%
AGCATATGGAAAATGAGGAA+AGG - chr6.1:66998275-66998294 None:intergenic 35.0%
AGGAGCAGAAAAATAGGTTA+AGG + chr6.1:66998324-66998343 MS.gene069677:intron 35.0%
CCACTTTGTCAAACAATCAA+TGG - chr6.1:66996194-66996213 None:intergenic 35.0%
CGGTGAGTTTGATAAAATCA+CGG - chr6.1:66996480-66996499 None:intergenic 35.0%
CTAATGTTTGAATAGGCCAA+TGG + chr6.1:66996270-66996289 MS.gene069677:intron 35.0%
CTAGAGTAAGAAGAACTTGT+AGG + chr6.1:66998293-66998312 MS.gene069677:intron 35.0%
CTCTTTGATCATCGTTCTTT+CGG - chr6.1:66998581-66998600 None:intergenic 35.0%
GAAAGAACGATGATCAAAGA+GGG + chr6.1:66998580-66998599 MS.gene069677:intron 35.0%
GACAGAATACAATGAGAACA+AGG - chr6.1:66999168-66999187 None:intergenic 35.0%
GCATATGGAAAATGAGGAAA+GGG - chr6.1:66998274-66998293 None:intergenic 35.0%
GGAGCAGAAAAATAGGTTAA+GGG + chr6.1:66998325-66998344 MS.gene069677:intron 35.0%
GTGATCTACTTGACTCTAAT+CGG + chr6.1:66996848-66996867 MS.gene069677:CDS 35.0%
GTTCTTCTTACTCTAGCATA+TGG - chr6.1:66998289-66998308 None:intergenic 35.0%
TAATGTGTTAGACTGTTGTC+AGG - chr6.1:66998847-66998866 None:intergenic 35.0%
TACAATGAGAACAAGGTGAA+AGG - chr6.1:66999161-66999180 None:intergenic 35.0%
TAGAGTAAACAACGAGCAAT+TGG - chr6.1:66996643-66996662 None:intergenic 35.0%
TCTTCATGTCAGTGATAACT+AGG - chr6.1:66997478-66997497 None:intergenic 35.0%
TGACAAAACCTACTCTTTGT+TGG + chr6.1:66996433-66996452 MS.gene069677:intron 35.0%
TGCAACCTGAAAATTGTTGA+AGG - chr6.1:66996800-66996819 None:intergenic 35.0%
TGCAGCATTTCTTAAACTAC+AGG - chr6.1:66997329-66997348 None:intergenic 35.0%
TGTGAAAGTCTTTCTTACCA+TGG + chr6.1:66997137-66997156 MS.gene069677:intron 35.0%
TTAAATGATGAGGAAGAGGA+AGG - chr6.1:66998189-66998208 None:intergenic 35.0%
TTAGCATTACCATGAAGTAC+AGG + chr6.1:66998413-66998432 MS.gene069677:intron 35.0%
TTAGTGCATGTTTGGTATCA+CGG + chr6.1:66996132-66996151 MS.gene069677:intron 35.0%
TTGTTACCAACTGTCTAAGA+AGG + chr6.1:66998793-66998812 MS.gene069677:intron 35.0%
TTTCCTCTAATGACATCTTC+TGG + chr6.1:66997868-66997887 MS.gene069677:intron 35.0%
! ACATCTCTAAAAACAGGAAC+TGG - chr6.1:66996313-66996332 None:intergenic 35.0%
! CCATTGATTGTTTGACAAAG+TGG + chr6.1:66996191-66996210 MS.gene069677:intron 35.0%
! CCGACTCTATTATTCTTTTC+TGG + chr6.1:66997266-66997285 MS.gene069677:intron 35.0%
! CCTTTGCGTTCTTTTTACAT+CGG + chr6.1:66998731-66998750 MS.gene069677:intron 35.0%
! TGGATGACATCTCTAAAAAC+AGG - chr6.1:66996319-66996338 None:intergenic 35.0%
! TTTCTGGTGTTAGAATCTGT+CGG + chr6.1:66997282-66997301 MS.gene069677:intron 35.0%
!! AGCATAGTACATTTTGAGTC+AGG - chr6.1:66997555-66997574 None:intergenic 35.0%
!! AGTTGGTAACAATGCTCAAA+AGG - chr6.1:66998785-66998804 None:intergenic 35.0%
!! ATTTTGATGATTGTAGGAGG+AGG + chr6.1:66995956-66995975 MS.gene069677:intron 35.0%
!! GAAACTATTCGGTGTATGTT+TGG - chr6.1:66996508-66996527 None:intergenic 35.0%
!! TTGTTGGTTCAGCAAAATCA+AGG + chr6.1:66996449-66996468 MS.gene069677:intron 35.0%
!!! CATACGTTTTTCAAGAAACG+TGG + chr6.1:66996047-66996066 MS.gene069677:CDS 35.0%
!!! CATCATTTTTAGCTTTTCGG+TGG + chr6.1:66998627-66998646 MS.gene069677:intron 35.0%
!!! TATTTTTTGCGTTTACGCCT+AGG - chr6.1:66998894-66998913 None:intergenic 35.0%
!!! TTTTTTCAGCCGAAATCAGA+AGG + chr6.1:66999071-66999090 MS.gene069677:intron 35.0%
AAAACACTCGAGGAAACGTT+GGG - chr6.1:66997442-66997461 None:intergenic 40.0%
AAGCCTTTGCCTTCTGATTT+CGG - chr6.1:66999083-66999102 None:intergenic 40.0%
AAGGAAGAGAAATGCTGCAA+AGG + chr6.1:66999271-66999290 MS.gene069677:CDS 40.0%
AATGCTACCTTTCTTTCAGC+AGG - chr6.1:66997802-66997821 None:intergenic 40.0%
ACACGTCTTAGACACATCTA+CGG + chr6.1:66998541-66998560 MS.gene069677:intron 40.0%
ACTCACATCATCTGATATGC+TGG - chr6.1:66995849-66995868 None:intergenic 40.0%
AGGATTCCTTCTTAGACAGT+TGG - chr6.1:66998802-66998821 None:intergenic 40.0%
AGTCAAGTAGATCACCACAA+TGG - chr6.1:66996843-66996862 None:intergenic 40.0%
ATCTGACAGAGTCTAATGCA+CGG - chr6.1:66997581-66997600 None:intergenic 40.0%
ATGTTTGAATAGGCCAATGG+AGG + chr6.1:66996273-66996292 MS.gene069677:intron 40.0%
CCAAGATTTGAATCCCATTG+TGG + chr6.1:66996826-66996845 MS.gene069677:CDS 40.0%
CCACAATGGGATTCAAATCT+TGG - chr6.1:66996829-66996848 None:intergenic 40.0%
CCGATGTAAAAAGAACGCAA+AGG - chr6.1:66998734-66998753 None:intergenic 40.0%
CGAAAGAACGATGATCAAAG+AGG + chr6.1:66998579-66998598 MS.gene069677:intron 40.0%
GACACAACAGACTCTTAAGA+GGG + chr6.1:66997890-66997909 MS.gene069677:intron 40.0%
GCAGAAAAATAGGTTAAGGG+TGG + chr6.1:66998328-66998347 MS.gene069677:intron 40.0%
GCATAATCCAAGTACAATGC+AGG - chr6.1:66997685-66997704 None:intergenic 40.0%
GTACAGGCACCTATGAAATT+AGG + chr6.1:66998429-66998448 MS.gene069677:intron 40.0%
GTCAAGTAGATCACCACAAT+GGG - chr6.1:66996842-66996861 None:intergenic 40.0%
GTCAGTGTCCTATACTTCTA+CGG + chr6.1:66998455-66998474 MS.gene069677:intron 40.0%
TAAAACACTCGAGGAAACGT+TGG - chr6.1:66997443-66997462 None:intergenic 40.0%
TCGGTGTATGTTTGGATGAA+CGG - chr6.1:66996500-66996519 None:intergenic 40.0%
TGATCTTCCTGCTGAAAGAA+AGG + chr6.1:66997792-66997811 MS.gene069677:CDS 40.0%
TGTCCAGAAGATGTCATTAG+AGG - chr6.1:66997874-66997893 None:intergenic 40.0%
TTGAGAATTGGTCGAAGTTG+TGG + chr6.1:66997090-66997109 MS.gene069677:intron 40.0%
TTGCTGAACCAACAAAGAGT+AGG - chr6.1:66996444-66996463 None:intergenic 40.0%
TTGTTAGAGCCCATAATCCT+AGG + chr6.1:66998874-66998893 MS.gene069677:intron 40.0%
! AGTTTTCCAGATGCCTGAAA+TGG - chr6.1:66999230-66999249 None:intergenic 40.0%
! GCATGCCTTCAACAATTTTC+AGG + chr6.1:66996792-66996811 MS.gene069677:intron 40.0%
!! TAAGCTTTAGGTAGTTGCAG+AGG + chr6.1:66998912-66998931 MS.gene069677:intron 40.0%
AGAACAACGAACACATCCAG+AGG - chr6.1:66996882-66996901 None:intergenic 45.0%
AGATCACCTTCTTAGGAGCA+TGG - chr6.1:66996339-66996358 None:intergenic 45.0%
CACGTAGTTTCACAGACACA+AGG - chr6.1:66996235-66996254 None:intergenic 45.0%
CATGGAGCCTAACCATGATT+CGG - chr6.1:66996409-66996428 None:intergenic 45.0%
CTAATCGGTATGTTCACCTC+TGG + chr6.1:66996863-66996882 MS.gene069677:intron 45.0%
GCGTTTACGCCTAGGATTAT+GGG - chr6.1:66998886-66998905 None:intergenic 45.0%
GGAAGAGATATTGAAGGAGC+TGG + chr6.1:66995977-66995996 MS.gene069677:CDS 45.0%
GGACACAACAGACTCTTAAG+AGG + chr6.1:66997889-66997908 MS.gene069677:intron 45.0%
GGAGGAGGAAGAGATATTGA+AGG + chr6.1:66995971-66995990 MS.gene069677:intron 45.0%
TAATTTACGGGCTCATGGAG+AGG + chr6.1:66996610-66996629 MS.gene069677:intron 45.0%
TCATAGGTGCCTGTACTTCA+TGG - chr6.1:66998425-66998444 None:intergenic 45.0%
TCATCTGATATGCTGGAACC+TGG - chr6.1:66995842-66995861 None:intergenic 45.0%
TCTTCACCATTTCAGGCATC+TGG + chr6.1:66999221-66999240 MS.gene069677:intron 45.0%
TGCATGTTTGGTATCACGGT+GGG + chr6.1:66996136-66996155 MS.gene069677:intron 45.0%
TGCGTTTACGCCTAGGATTA+TGG - chr6.1:66998887-66998906 None:intergenic 45.0%
TGTCATCCATGCTCCTAAGA+AGG + chr6.1:66996330-66996349 MS.gene069677:CDS 45.0%
TTGCAGAACGCTCGATCTAA+CGG + chr6.1:66996020-66996039 MS.gene069677:CDS 45.0%
! GACACTTGCCGTAGAAGTAT+AGG - chr6.1:66998466-66998485 None:intergenic 45.0%
! TTCTTGCTACTAGCCTCCAT+TGG - chr6.1:66996289-66996308 None:intergenic 45.0%
!!! TTGAGGCAGAGATTTTGGCT+AGG + chr6.1:66998098-66998117 MS.gene069677:CDS 45.0%
AAGCTCGGAAGTGGAATTCC+AGG + chr6.1:66995821-66995840 MS.gene069677:CDS 50.0%
ACAGAGAGAAGCTGCAAAGG+AGG + chr6.1:66998132-66998151 MS.gene069677:CDS 50.0%
CAGAGAGAAGCTGCAAAGGA+GGG + chr6.1:66998133-66998152 MS.gene069677:CDS 50.0%
CAGCCGAAATCAGAAGGCAA+AGG + chr6.1:66999077-66999096 MS.gene069677:intron 50.0%
CGTCTTAGACACATCTACGG+AGG + chr6.1:66998544-66998563 MS.gene069677:intron 50.0%
CTGTCGACAGGTCTAGCATA+TGG - chr6.1:66999311-66999330 None:intergenic 50.0%
GAGACAGAGAGAAGCTGCAA+AGG + chr6.1:66998129-66998148 MS.gene069677:CDS 50.0%
GCTGGCTGATGTAACGTTTG+AGG + chr6.1:66995995-66996014 MS.gene069677:CDS 50.0%
GTGCATGTTTGGTATCACGG+TGG + chr6.1:66996135-66996154 MS.gene069677:intron 50.0%
TCGATTTCACTTCTGCGCTC+TGG - chr6.1:66997936-66997955 None:intergenic 50.0%
TGCAGAACGCTCGATCTAAC+GGG + chr6.1:66996021-66996040 MS.gene069677:CDS 50.0%
! AGACTGGCCGAATCATGGTT+AGG + chr6.1:66996399-66996418 MS.gene069677:intron 50.0%
!!! GTTTTGGTTGGCGTTGAGAC+TGG + chr6.1:66996383-66996402 MS.gene069677:intron 50.0%
TTTACGGGCTCATGGAGAGG+AGG + chr6.1:66996613-66996632 MS.gene069677:intron 55.0%
! CGTTGAGACTGGCCGAATCA+TGG + chr6.1:66996394-66996413 MS.gene069677:intron 55.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 66995815 66999337 66995815 ID=MS.gene069677
chr6.1 mRNA 66995815 66999337 66995815 ID=MS.gene069677.t1;Parent=MS.gene069677
chr6.1 exon 66995815 66995862 66995815 ID=MS.gene069677.t1.exon1;Parent=MS.gene069677.t1
chr6.1 CDS 66995815 66995862 66995815 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66995972 66996105 66995972 ID=MS.gene069677.t1.exon2;Parent=MS.gene069677.t1
chr6.1 CDS 66995972 66996105 66995972 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66996285 66996351 66996285 ID=MS.gene069677.t1.exon3;Parent=MS.gene069677.t1
chr6.1 CDS 66996285 66996351 66996285 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66996814 66996869 66996814 ID=MS.gene069677.t1.exon4;Parent=MS.gene069677.t1
chr6.1 CDS 66996814 66996869 66996814 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66997759 66997813 66997759 ID=MS.gene069677.t1.exon5;Parent=MS.gene069677.t1
chr6.1 CDS 66997759 66997813 66997759 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66997900 66997974 66997900 ID=MS.gene069677.t1.exon6;Parent=MS.gene069677.t1
chr6.1 CDS 66997900 66997974 66997900 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66998064 66998181 66998064 ID=MS.gene069677.t1.exon7;Parent=MS.gene069677.t1
chr6.1 CDS 66998064 66998181 66998064 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66999080 66999126 66999080 ID=MS.gene069677.t1.exon8;Parent=MS.gene069677.t1
chr6.1 CDS 66999080 66999126 66999080 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
chr6.1 exon 66999236 66999337 66999236 ID=MS.gene069677.t1.exon9;Parent=MS.gene069677.t1
chr6.1 CDS 66999236 66999337 66999236 ID=cds.MS.gene069677.t1;Parent=MS.gene069677.t1
Gene Sequence

>MS.gene069677

ATGAAGAAGCTCGGAAGTGGAATTCCAGGTTCCAGCATATCAGATGATGTGAGTAACTTAAAAAAAAAATCATCATGTTATATACTTTTTAATAAAAAACTAACCATGTCATAGTAAGTTTGTAACTTTGTATTATTATTGATTTTGATGATTGTAGGAGGAGGAAGAGATATTGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAACGCTCGATCTAACGGGACGCATACGTTTTTCAAGAAACGTGGAGAAGAAAAGAAGTTGAAAAGGCTTAATAAGAATAGGTGTTTTATTTGTATTATAGTAATAGTTAGTGCATGTTTGGTATCACGGTGGGTTTGCAAAATTACGTGATACCAAACATGTATTCCATTGATTGTTTGACAAAGTGGTTTTCATTTTCTTCTAATCCTTGTGTCTGTGAAACTACGTGAAAATAAAATAATTTCTAATGTTTGAATAGGCCAATGGAGGCTAGTAGCAAGAAGCCAGTTCCTGTTTTTAGAGATGTCATCCATGCTCCTAAGAAGGTGATCTTGATTCTTGACAAATTGATTTCATGTTTTGGTTGGCGTTGAGACTGGCCGAATCATGGTTAGGCTCCATGATTTTGACAAAACCTACTCTTTGTTGGTTCAGCAAAATCAAGGTGTCACCGTGATTTTATCAAACTCACCGTTCATCCAAACATACACCGAATAGTTTCTAATCAAAATAGTTTCATGGAGGCCATTAACTTGCATAGTTTATTTTTGGGTGTAATATTTTAGACTATTTTCCCTATAAAATAATTTACGGGCTCATGGAGAGGAGGAAAACCAATTGCTCGTTGTTTACTCTACAATTGCGCACACACTTCGAAATATTCAAATTTTAAGGGTTGTTCTATTTGATGTGGAAACTCATGTTGAATTCGAATGTAAATGTGATCTTTCTGTTTTATATATCTGGATGATTTTTGATGAGTTATGCATGCCTTCAACAATTTTCAGGTTGCATGTGATCCAAGATTTGAATCCCATTGTGGTGATCTACTTGACTCTAATCGGTATGTTCACCTCTGGATGTGTTCGTTGTTCTACCTTTTTCTTGTTGTGTTCATTTTTGCTGAGAAATGTTATTATTTTAATTGCAATTGACATGGCAAATTTTAAGCATTTTCATATATCGGCGTAAAACCATGATGATATTTTCTATGTTTTCCATTTTAGAGTATGCTTAGCTAAGTGATGTTCTTTAACAATTTTTATTTTAATTAAGAGCTAATGTTGAGAATTGGTCGAAGTTGTGGACAGAAGAATGCAAATTAATTTCATGTGAAAGTCTTTCTTACCATGGTCCCAAGATTTAAATTAATCCTTAAAAAACATTAATACAACACGTATAATAATCTTTTCTGGTTTTCTGTCATTGATAGTTTTGTTTCTACAAACAAACTCAAATCCCGACTCTATTATTCTTTTCTGGTGTTAGAATCTGTCGGATAATATGAAATGATCTTTATCCTGTAGTTTAAGAAATGCTGCAGTTTTTTATTTGCAATCATCATATCAATTTTAAGCATTTTCCTATTGTAGTAAAGTCTTCTGATTTTGGTTGTATTTTAGAGCATGTGTGCCCAACGTTTCCTCGAGTGTTTTAAATTATACAAGACCTAGTTATCACTGACATGAAGAAAACAACTTATTGAGAATGTGTTAAAGGCTTAAATCCGCAGAAAAATTCTTTATCCTGACTCAAAATGTACTATGCTTTACCGTGCATTAGACTCTGTCAGATAATATTGAAGAATCTTTACAGTGACAATTATTTTTAGTGCATAGGTTCGTTGATTTTTTTAGTAGACTATGCTTAATTATACCTGCATTGTACTTGGATTATGCTTTTGATGTTACTATTTTGTGTAGCATTAATAATATAAGTACTTGGACTTACAGGTTTAGAAAGAAATATAAGTTTTTATACGAAAATGATCTTCCTGCTGAAAGAAAGGTAGCATTTTACAGATTGTAACAACAAAGTTTTGTCTATAACTTATTTTGTGACTTTCCTCTAATGACATCTTCTGGACACAACAGACTCTTAAGAGGGAATTGAAAAAGTGTAAAGATCCAGAGCGCAGAAGTGAAATCGAAGAACTCGTATCATGGATTGTAAGTGCATGTCATTTCGAAGTTCGTCTTCTCTGTCCAGAAGTGTGACATTTATTAGTTTACTTGATCACATTTACATTTCTTTTCAGGATAAACAGTTGAAGCCTGATTCAGCAAGAAATATTGAGGCAGAGATTTTGGCTAGGCATAAGAAGAGACAGAGAGAAGCTGCAAAGGAGGGAAGACGTCCTTTTTATCTCAAGAAATGTAACCTTCCTCTTCCTCATCATTTAATCTTCCTTACTCTCACTTTCAATATGTTAGAAATGCAATCTCTGCTTCTGTTAATTTTATCTCCCTTTCCTCATTTTCCATATGCTAGAGTAAGAAGAACTTGTAGGTTTACTATAGGAGCAGAAAAATAGGTTAAGGGTGGCATTTAATTAGTTTCTATTCGGTTAGATTAAGTTGGGAAATCAACTGAAGTTTGTTACTCTGTTAGCATTACCATGAAGTACAGGCACCTATGAAATTAGGTGTGTCAGTGTCCTATACTTCTACGGCAAGTGTCTGACAACTCCGAAAAAGTATCGCAAAAAAAGAAACTTTTTTCTTTCTTTGTTGTGACACGTCTTAGACACATCTACGGAGGATAAAGATGAGCCGAAAGAACGATGATCAAAGAGGGAGTTCAAGACATTAAGTTTGATTACATCATTTTTAGCTTTTCGGTGGCAGATGAATAAATGAAAAGACTATCATATCTTGTTTTAGATTTTCTTTTTTAATGAAACCAATCACTCAATTTAGAATGCTCCTTTGCGTTCTTTTTACATCGGTCTTTCATAGTATAGTCATTATTCTATTCCTTTTGAGCATTGTTACCAACTGTCTAAGAAGGAATCCTAACACTATGCTTTTAAGTGAAACCTGACAACAGTCTAACACATTACAATATTTTGTTAGAGCCCATAATCCTAGGCGTAAACGCAAAAAATAAGCTTTAGGTAGTTGCAGAGGCAGTGTGAATATCATCTTTGTTCCCTATAATTATTTATTTCACATTTAGATGCTTGAGATACAATTCTTTGAATTTGAAGGTTAAACAGTATCAAACAAATGAACTGACAAACAATATATAATGACTTTTTTTTTTTTTTTTCAGCCGAAATCAGAAGGCAAAGGCTTATTGAAAAATATAAGCATCTCAAGGTATGTGTATCTTAGAACATTTCTATGTGCTCCTTTCACCTTGTTCTCATTGTATTCTGTCATTTTGCTTGTCTTCTCCATTAATTCTATCTATTCTTCACCATTTCAGGCATCTGGAAAACTTGATTCATATATTGAAAAAAGAAGGAAGAGAAATGCTGCAAAGGACCATAGATTTATGCCATATGCTAGACCTGTCGACAGCGAATAG
Protein sequence

>MS.gene069677.t1

MKKLGSGIPGSSISDDEEEEILKELADVTFEELQNARSNGTHTFFKKRGEEKKLKRLNKNRPMEASSKKPVPVFRDVIHAPKKVACDPRFESHCGDLLDSNRFRKKYKFLYENDLPAERKTLKRELKKCKDPERRSEIEELVSWIDKQLKPDSARNIEAEILARHKKRQREAAKEGRRPFYLKKSEIRRQRLIEKYKHLKASGKLDSYIEKRRKRNAAKDHRFMPYARPVDSE