Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06970.t1 | XP_003593610.1 | 96.5 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 8.80E-104 | 386.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06970.t1 | Q9ZQH0 | 74.6 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 6.6e-84 | 311.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06970.t1 | G7ISC8 | 96.5 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 6.3e-104 | 386.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052896 | MS.gene06970 | 0.805874 | 1.08E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06970.t1 | MTR_2g014120 | 96.517 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 5.68e-139 | 388 |
MS.gene06970.t1 | MTR_7g108540 | 96.517 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 1.19e-138 | 387 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06970.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
MS.gene06970.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
MS.gene06970.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
MS.gene06970.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
Find 53 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTCTCTGAATCTGTGTTTC+AGG | 0.221958 | 7.3:+6404907 | None:intergenic |
ATCAACCCACACAACAATTA+TGG | 0.226242 | 7.3:+6404930 | None:intergenic |
ATATATCCTCGGGGATCTTT+TGG | 0.227206 | 7.3:-6405044 | MS.gene06970:CDS |
TTGAGAAATTGACGCTTATC+AGG | 0.303211 | 7.3:+6405168 | None:intergenic |
TGAACAATTTCAGAACGTTT+TGG | 0.336190 | 7.3:-6404758 | MS.gene06970:CDS |
AGATGCCGCTGGATGGTAAA+AGG | 0.351308 | 7.3:-6404831 | MS.gene06970:CDS |
TGACGTCCCTTTGTTATTTG+AGG | 0.363223 | 7.3:-6404977 | MS.gene06970:CDS |
AAGATCCCCGAGGATATATA+TGG | 0.384217 | 7.3:+6405048 | None:intergenic |
ATAGAATAAATGAGGATTGT+TGG | 0.388584 | 7.3:-6405506 | None:intergenic |
ACTACATCAGCGTCGACAAC+AGG | 0.406465 | 7.3:+6405419 | None:intergenic |
GTCGTGAGACTTGAATAAAT+TGG | 0.409640 | 7.3:+6405445 | None:intergenic |
TCAACCCACACAACAATTAT+GGG | 0.455800 | 7.3:+6404931 | None:intergenic |
TACTAGGATGCGTTGAAGAA+AGG | 0.463219 | 7.3:-6405294 | MS.gene06970:intron |
TTGGCTCCATATATATCCTC+GGG | 0.483634 | 7.3:-6405054 | MS.gene06970:CDS |
ACTAGGATGCGTTGAAGAAA+GGG | 0.487032 | 7.3:-6405293 | MS.gene06970:intron |
AACACAGATTCAGAGACTAT+TGG | 0.491505 | 7.3:-6404902 | MS.gene06970:CDS |
ATAAGCGTCAATTTCTCAAT+CGG | 0.497613 | 7.3:-6405164 | MS.gene06970:intron |
CTCATACCATGTCAAGGGTC+CGG | 0.506695 | 7.3:+6404726 | None:intergenic |
GTTGGCTCCATATATATCCT+CGG | 0.510068 | 7.3:-6405055 | MS.gene06970:CDS |
ATGAGGATTGTTGGACTGAC+TGG | 0.512619 | 7.3:-6405497 | MS.gene06970:CDS |
CGAAGCCCATAATTGTTGTG+TGG | 0.541419 | 7.3:-6404936 | MS.gene06970:CDS |
TGAAGAAAGGGAGCGGCGGA+TGG | 0.543910 | 7.3:-6405281 | MS.gene06970:CDS |
TCTTAGCCTCAAATAACAAA+GGG | 0.545675 | 7.3:+6404971 | None:intergenic |
AGACTTGAATAAATTGGAAA+CGG | 0.547925 | 7.3:+6405451 | None:intergenic |
AAAACGATTTGGCCAAGTCT+GGG | 0.565501 | 7.3:+6405198 | None:intergenic |
GGTCAATGCTCAGATGCCGC+TGG | 0.566232 | 7.3:-6404842 | MS.gene06970:CDS |
TTTGGGAAGTTGTGAAGCTG+TGG | 0.578755 | 7.3:-6405026 | MS.gene06970:CDS |
CGAGGAGGATGGTCGGAACA+AGG | 0.580768 | 7.3:-6404863 | MS.gene06970:CDS |
GTTGTGAAGCTGTGGTTGAA+AGG | 0.585087 | 7.3:-6405018 | MS.gene06970:CDS |
ATCTTAGCCTCAAATAACAA+AGG | 0.586193 | 7.3:+6404970 | None:intergenic |
AGTTGTTGCCGCATTTGGGG+AGG | 0.589535 | 7.3:-6405253 | MS.gene06970:CDS |
CCAAAACTCATACCATGTCA+AGG | 0.598156 | 7.3:+6404720 | None:intergenic |
AGTCTAGCGAGGAGGATGGT+CGG | 0.598811 | 7.3:-6404870 | MS.gene06970:CDS |
GAAGTTAACAGACCCAGACT+TGG | 0.601753 | 7.3:-6405210 | MS.gene06970:CDS |
GGGTCACCGGACCCTTGACA+TGG | 0.606552 | 7.3:-6404732 | MS.gene06970:intron |
AAAAGTTGTTGCCGCATTTG+GGG | 0.607962 | 7.3:-6405256 | MS.gene06970:CDS |
GAGGAAATTCTACTAGACAA+TGG | 0.608332 | 7.3:-6405234 | MS.gene06970:CDS |
GATAAGTCTAGCGAGGAGGA+TGG | 0.608356 | 7.3:-6404874 | MS.gene06970:CDS |
AATGCTCAGATGCCGCTGGA+TGG | 0.610763 | 7.3:-6404838 | MS.gene06970:CDS |
GAAGCCCATAATTGTTGTGT+GGG | 0.612377 | 7.3:-6404935 | MS.gene06970:CDS |
GCTGTGGTTGAAAGGTTACA+AGG | 0.613383 | 7.3:-6405010 | MS.gene06970:CDS |
TAGAATTTCCTCCCCAAATG+CGG | 0.615844 | 7.3:+6405245 | None:intergenic |
CAAAACTCATACCATGTCAA+GGG | 0.641999 | 7.3:+6404721 | None:intergenic |
AGGATTGTTGGACTGACTGG+TGG | 0.644760 | 7.3:-6405494 | MS.gene06970:CDS |
GATGCGTTGAAGAAAGGGAG+CGG | 0.653195 | 7.3:-6405288 | MS.gene06970:CDS |
GGCAAGAGATAAGTCTAGCG+AGG | 0.657006 | 7.3:-6404881 | MS.gene06970:CDS |
GATATAGTAATCGACAACAC+TGG | 0.662812 | 7.3:-6404799 | MS.gene06970:CDS |
AAGAGATAAGTCTAGCGAGG+AGG | 0.683714 | 7.3:-6404878 | MS.gene06970:CDS |
GCGTTGAAGAAAGGGAGCGG+CGG | 0.690363 | 7.3:-6405285 | MS.gene06970:CDS |
CTACATCAGCGTCGACAACA+GGG | 0.699636 | 7.3:+6405420 | None:intergenic |
TGGCTCCATATATATCCTCG+GGG | 0.732858 | 7.3:-6405053 | MS.gene06970:CDS |
CTGACTGGTGGAATAGCAAG+TGG | 0.743435 | 7.3:-6405482 | MS.gene06970:CDS |
AACTTCCCAAAAGATCCCCG+AGG | 0.762062 | 7.3:+6405038 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTACTTTATTTTTGAAGTTT+CGG | - | chr7.3:6405044-6405063 | MS.gene06970:CDS | 15.0% |
! | AAATTATAAGCAAAGCCAAA+AGG | + | chr7.3:6404787-6404806 | None:intergenic | 25.0% |
! | AGACTTGAATAAATTGGAAA+CGG | + | chr7.3:6404695-6404714 | None:intergenic | 25.0% |
! | GGTATTCTAAATTTATGTTG+TGG | - | chr7.3:6405000-6405019 | MS.gene06970:CDS | 25.0% |
! | TTATTGGGATTTGAATTACT+AGG | - | chr7.3:6404833-6404852 | MS.gene06970:CDS | 25.0% |
!!! | TTTGGCTTTGCTTATAATTT+GGG | - | chr7.3:6404787-6404806 | MS.gene06970:CDS | 25.0% |
!!! | TTTTGGCTTTGCTTATAATT+TGG | - | chr7.3:6404786-6404805 | MS.gene06970:CDS | 25.0% |
ATAAGCGTCAATTTCTCAAT+CGG | - | chr7.3:6404979-6404998 | MS.gene06970:CDS | 30.0% | |
ATCTTAGCCTCAAATAACAA+AGG | + | chr7.3:6405176-6405195 | None:intergenic | 30.0% | |
TCTTAGCCTCAAATAACAAA+GGG | + | chr7.3:6405175-6405194 | None:intergenic | 30.0% | |
! | TGAACAATTTCAGAACGTTT+TGG | - | chr7.3:6405385-6405404 | MS.gene06970:intron | 30.0% |
!! | TTGGCTTTGCTTATAATTTG+GGG | - | chr7.3:6404788-6404807 | MS.gene06970:CDS | 30.0% |
!!! | AATTTCAGAACGTTTTGGTT+CGG | - | chr7.3:6405390-6405409 | MS.gene06970:intron | 30.0% |
!!! | TAATGGTTGTTTTAGGTTGT+TGG | - | chr7.3:6405070-6405089 | MS.gene06970:intron | 30.0% |
!!! | TTCGTGTTTTTTTCACCTTT+TGG | - | chr7.3:6404769-6404788 | MS.gene06970:CDS | 30.0% |
!!! | TTTTGAAGTTTCGGTTGTAA+TGG | - | chr7.3:6405053-6405072 | MS.gene06970:CDS | 30.0% |
AAAAAAGTTGTTGCCGCATT+TGG | - | chr7.3:6404885-6404904 | MS.gene06970:CDS | 35.0% | |
AAAAAGTTGTTGCCGCATTT+GGG | - | chr7.3:6404886-6404905 | MS.gene06970:CDS | 35.0% | |
AACACAGATTCAGAGACTAT+TGG | - | chr7.3:6405241-6405260 | MS.gene06970:CDS | 35.0% | |
ATCAACCCACACAACAATTA+TGG | + | chr7.3:6405216-6405235 | None:intergenic | 35.0% | |
CAAAACTCATACCATGTCAA+GGG | + | chr7.3:6405425-6405444 | None:intergenic | 35.0% | |
GAGGAAATTCTACTAGACAA+TGG | - | chr7.3:6404909-6404928 | MS.gene06970:CDS | 35.0% | |
GATATAGTAATCGACAACAC+TGG | - | chr7.3:6405344-6405363 | MS.gene06970:intron | 35.0% | |
GTCGTGAGACTTGAATAAAT+TGG | + | chr7.3:6404701-6404720 | None:intergenic | 35.0% | |
TCAACCCACACAACAATTAT+GGG | + | chr7.3:6405215-6405234 | None:intergenic | 35.0% | |
TTGAGAAATTGACGCTTATC+AGG | + | chr7.3:6404978-6404997 | None:intergenic | 35.0% | |
!! | TCGGTTGTAATGGTTGTTTT+AGG | - | chr7.3:6405063-6405082 | MS.gene06970:intron | 35.0% |
!!! | ATTTCAGAACGTTTTGGTTC+GGG | - | chr7.3:6405391-6405410 | MS.gene06970:intron | 35.0% |
AAAAGTTGTTGCCGCATTTG+GGG | - | chr7.3:6404887-6404906 | MS.gene06970:CDS | 40.0% | |
AAGATCCCCGAGGATATATA+TGG | + | chr7.3:6405098-6405117 | None:intergenic | 40.0% | |
ACTAGGATGCGTTGAAGAAA+GGG | - | chr7.3:6404850-6404869 | MS.gene06970:CDS | 40.0% | |
AGTCTCTGAATCTGTGTTTC+AGG | + | chr7.3:6405239-6405258 | None:intergenic | 40.0% | |
ATTCTCGCTTCATTTACCTC+AGG | - | chr7.3:6405470-6405489 | MS.gene06970:CDS | 40.0% | |
CAGGATCAGCAAAAACGATT+TGG | + | chr7.3:6404959-6404978 | None:intergenic | 40.0% | |
CATACATAGAACAACACCTG+AGG | + | chr7.3:6405489-6405508 | None:intergenic | 40.0% | |
CCAAAACTCATACCATGTCA+AGG | + | chr7.3:6405426-6405445 | None:intergenic | 40.0% | |
GAAGCCCATAATTGTTGTGT+GGG | - | chr7.3:6405208-6405227 | MS.gene06970:CDS | 40.0% | |
TACTAGGATGCGTTGAAGAA+AGG | - | chr7.3:6404849-6404868 | MS.gene06970:CDS | 40.0% | |
TAGAATTTCCTCCCCAAATG+CGG | + | chr7.3:6404901-6404920 | None:intergenic | 40.0% | |
TTGGCTCCATATATATCCTC+GGG | - | chr7.3:6405089-6405108 | MS.gene06970:intron | 40.0% | |
! | AAAAACGATTTGGCCAAGTC+TGG | + | chr7.3:6404949-6404968 | None:intergenic | 40.0% |
! | AAAACGATTTGGCCAAGTCT+GGG | + | chr7.3:6404948-6404967 | None:intergenic | 40.0% |
! | ATATATCCTCGGGGATCTTT+TGG | - | chr7.3:6405099-6405118 | MS.gene06970:intron | 40.0% |
! | CCTTGACATGGTATGAGTTT+TGG | - | chr7.3:6405423-6405442 | MS.gene06970:CDS | 40.0% |
! | GTTGGCTCCATATATATCCT+CGG | - | chr7.3:6405088-6405107 | MS.gene06970:intron | 40.0% |
! | TATATCCTCGGGGATCTTTT+GGG | - | chr7.3:6405100-6405119 | MS.gene06970:intron | 40.0% |
! | TTACTCCTTTTACCATCCAG+CGG | + | chr7.3:6405320-6405339 | None:intergenic | 40.0% |
!! | TGACGTCCCTTTGTTATTTG+AGG | - | chr7.3:6405166-6405185 | MS.gene06970:CDS | 40.0% |
AAGAGATAAGTCTAGCGAGG+AGG | - | chr7.3:6405265-6405284 | MS.gene06970:CDS | 45.0% | |
AATAACCACCGACCATGAGA+GGG | + | chr7.3:6404818-6404837 | None:intergenic | 45.0% | |
ATGAGGATTGTTGGACTGAC+TGG | - | chr7.3:6404646-6404665 | MS.gene06970:CDS | 45.0% | |
ATTTGGGGAAAACCCTCTCA+TGG | - | chr7.3:6404803-6404822 | MS.gene06970:CDS | 45.0% | |
CGAAGCCCATAATTGTTGTG+TGG | - | chr7.3:6405207-6405226 | MS.gene06970:CDS | 45.0% | |
GAAGTTAACAGACCCAGACT+TGG | - | chr7.3:6404933-6404952 | MS.gene06970:CDS | 45.0% | |
GCTGTGGTTGAAAGGTTACA+AGG | - | chr7.3:6405133-6405152 | MS.gene06970:intron | 45.0% | |
GTTGTGAAGCTGTGGTTGAA+AGG | - | chr7.3:6405125-6405144 | MS.gene06970:intron | 45.0% | |
TCTCATGGTCGGTGGTTATT+GGG | - | chr7.3:6404818-6404837 | MS.gene06970:CDS | 45.0% | |
TGGCTCCATATATATCCTCG+GGG | - | chr7.3:6405090-6405109 | MS.gene06970:intron | 45.0% | |
TTTGGGAAGTTGTGAAGCTG+TGG | - | chr7.3:6405117-6405136 | MS.gene06970:intron | 45.0% | |
!! | GGTATGAGTTTTGGCGTTCT+AGG | - | chr7.3:6405432-6405451 | MS.gene06970:CDS | 45.0% |
AACTTCCCAAAAGATCCCCG+AGG | + | chr7.3:6405108-6405127 | None:intergenic | 50.0% | |
AGATGCCGCTGGATGGTAAA+AGG | - | chr7.3:6405312-6405331 | MS.gene06970:intron | 50.0% | |
AGGATTGTTGGACTGACTGG+TGG | - | chr7.3:6404649-6404668 | MS.gene06970:CDS | 50.0% | |
CAATAACCACCGACCATGAG+AGG | + | chr7.3:6404819-6404838 | None:intergenic | 50.0% | |
CTCATACCATGTCAAGGGTC+CGG | + | chr7.3:6405420-6405439 | None:intergenic | 50.0% | |
CTCTCATGGTCGGTGGTTAT+TGG | - | chr7.3:6404817-6404836 | MS.gene06970:CDS | 50.0% | |
CTGACTGGTGGAATAGCAAG+TGG | - | chr7.3:6404661-6404680 | MS.gene06970:intron | 50.0% | |
GATAAGTCTAGCGAGGAGGA+TGG | - | chr7.3:6405269-6405288 | MS.gene06970:CDS | 50.0% | |
GATGCGTTGAAGAAAGGGAG+CGG | - | chr7.3:6404855-6404874 | MS.gene06970:CDS | 50.0% | |
GGCAAGAGATAAGTCTAGCG+AGG | - | chr7.3:6405262-6405281 | MS.gene06970:CDS | 50.0% | |
!! | ACTACATCAGCGTCGACAAC+AGG | + | chr7.3:6404727-6404746 | None:intergenic | 50.0% |
!! | CTACATCAGCGTCGACAACA+GGG | + | chr7.3:6404726-6404745 | None:intergenic | 50.0% |
!! | GAGTTTTGGCGTTCTAGGCA+GGG | - | chr7.3:6405437-6405456 | MS.gene06970:CDS | 50.0% |
!! | TGAGTTTTGGCGTTCTAGGC+AGG | - | chr7.3:6405436-6405455 | MS.gene06970:CDS | 50.0% |
!!! | AACGTTTTGGTTCGGGTCAC+CGG | - | chr7.3:6405398-6405417 | MS.gene06970:intron | 50.0% |
AATGCTCAGATGCCGCTGGA+TGG | - | chr7.3:6405305-6405324 | MS.gene06970:intron | 55.0% | |
AGTCTAGCGAGGAGGATGGT+CGG | - | chr7.3:6405273-6405292 | MS.gene06970:CDS | 55.0% | |
AGTTGTTGCCGCATTTGGGG+AGG | - | chr7.3:6404890-6404909 | MS.gene06970:CDS | 55.0% | |
GAAAACCCTCTCATGGTCGG+TGG | - | chr7.3:6404810-6404829 | MS.gene06970:CDS | 55.0% | |
GGGGAAAACCCTCTCATGGT+CGG | - | chr7.3:6404807-6404826 | MS.gene06970:CDS | 55.0% | |
CGAGGAGGATGGTCGGAACA+AGG | - | chr7.3:6405280-6405299 | MS.gene06970:CDS | 60.0% | |
GCGTTGAAGAAAGGGAGCGG+CGG | - | chr7.3:6404858-6404877 | MS.gene06970:CDS | 60.0% | |
GGTCAATGCTCAGATGCCGC+TGG | - | chr7.3:6405301-6405320 | MS.gene06970:intron | 60.0% | |
TGAAGAAAGGGAGCGGCGGA+TGG | - | chr7.3:6404862-6404881 | MS.gene06970:CDS | 60.0% | |
GGGTCACCGGACCCTTGACA+TGG | - | chr7.3:6405411-6405430 | MS.gene06970:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 6404646 | 6405519 | 6404646 | ID=MS.gene06970 |
chr7.3 | mRNA | 6404646 | 6405519 | 6404646 | ID=MS.gene06970.t1;Parent=MS.gene06970 |
chr7.3 | exon | 6405412 | 6405519 | 6405412 | ID=MS.gene06970.t1.exon1;Parent=MS.gene06970.t1 |
chr7.3 | CDS | 6405412 | 6405519 | 6405412 | ID=cds.MS.gene06970.t1;Parent=MS.gene06970.t1 |
chr7.3 | exon | 6405165 | 6405310 | 6405165 | ID=MS.gene06970.t1.exon2;Parent=MS.gene06970.t1 |
chr7.3 | CDS | 6405165 | 6405310 | 6405165 | ID=cds.MS.gene06970.t1;Parent=MS.gene06970.t1 |
chr7.3 | exon | 6404733 | 6405080 | 6404733 | ID=MS.gene06970.t1.exon3;Parent=MS.gene06970.t1 |
chr7.3 | CDS | 6404733 | 6405080 | 6404733 | ID=cds.MS.gene06970.t1;Parent=MS.gene06970.t1 |
chr7.3 | exon | 6404646 | 6404673 | 6404646 | ID=MS.gene06970.t1.exon4;Parent=MS.gene06970.t1 |
chr7.3 | CDS | 6404646 | 6404673 | 6404646 | ID=cds.MS.gene06970.t1;Parent=MS.gene06970.t1 |
Gene Sequence |
Protein sequence |