Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06971.t1 | RHN48932.1 | 95.1 | 307 | 13 | 2 | 1 | 306 | 1 | 306 | 7.10E-70 | 274.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06971.t1 | Q84J88 | 59.2 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 2.2e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06971.t1 | G7KRU9 | 95.1 | 307 | 13 | 2 | 1 | 306 | 1 | 306 | 5.1e-70 | 274.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053776 | MS.gene06971 | 0.820851 | 5.51E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06971.t1 | MTR_7g108560 | 96.104 | 308 | 8 | 3 | 1 | 306 | 1 | 306 | 0.0 | 589 |
| MS.gene06971.t1 | MTR_4g119820 | 34.796 | 319 | 146 | 14 | 19 | 306 | 71 | 358 | 6.96e-34 | 127 |
| MS.gene06971.t1 | MTR_1g107565 | 67.606 | 71 | 23 | 0 | 16 | 86 | 7 | 77 | 4.16e-26 | 106 |
| MS.gene06971.t1 | MTR_2g022250 | 67.143 | 70 | 23 | 0 | 17 | 86 | 5 | 74 | 3.39e-24 | 102 |
| MS.gene06971.t1 | MTR_4g117140 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 2.56e-23 | 100 |
| MS.gene06971.t1 | MTR_4g117220 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 3.62e-23 | 99.8 |
| MS.gene06971.t1 | MTR_2g436830 | 57.471 | 87 | 29 | 1 | 2 | 88 | 3 | 81 | 2.38e-22 | 94.7 |
| MS.gene06971.t1 | MTR_1g083310 | 55.056 | 89 | 32 | 2 | 1 | 88 | 1 | 82 | 1.34e-21 | 94.4 |
| MS.gene06971.t1 | MTR_7g113110 | 54.286 | 70 | 32 | 0 | 22 | 91 | 33 | 102 | 3.27e-20 | 90.1 |
| MS.gene06971.t1 | MTR_1g082650 | 57.143 | 70 | 30 | 0 | 17 | 86 | 5 | 74 | 1.62e-19 | 89.0 |
| MS.gene06971.t1 | MTR_2g022240 | 61.429 | 70 | 27 | 0 | 17 | 86 | 5 | 74 | 9.76e-18 | 83.6 |
| MS.gene06971.t1 | MTR_3g067750 | 48.611 | 72 | 37 | 0 | 17 | 88 | 7 | 78 | 9.55e-16 | 75.1 |
| MS.gene06971.t1 | MTR_1g030630 | 43.478 | 69 | 39 | 0 | 22 | 90 | 25 | 93 | 1.59e-14 | 70.1 |
| MS.gene06971.t1 | MTR_4g073040 | 44.444 | 72 | 39 | 1 | 20 | 90 | 26 | 97 | 1.72e-14 | 70.1 |
| MS.gene06971.t1 | MTR_3g087770 | 47.887 | 71 | 37 | 0 | 20 | 90 | 28 | 98 | 2.33e-14 | 69.7 |
| MS.gene06971.t1 | MTR_8g091420 | 47.692 | 65 | 34 | 0 | 26 | 90 | 33 | 97 | 1.89e-13 | 67.4 |
| MS.gene06971.t1 | MTR_5g025150 | 42.424 | 66 | 38 | 0 | 22 | 87 | 23 | 88 | 2.59e-13 | 66.6 |
| MS.gene06971.t1 | MTR_7g013660 | 40.000 | 70 | 42 | 0 | 19 | 88 | 1 | 70 | 4.17e-13 | 65.5 |
| MS.gene06971.t1 | MTR_3g073670 | 33.010 | 103 | 56 | 2 | 26 | 115 | 30 | 132 | 1.70e-12 | 64.3 |
| MS.gene06971.t1 | MTR_1g092670 | 40.260 | 77 | 45 | 1 | 19 | 94 | 1 | 77 | 3.53e-12 | 61.6 |
| MS.gene06971.t1 | MTR_3g117890 | 37.500 | 72 | 44 | 1 | 20 | 90 | 24 | 95 | 5.60e-12 | 63.2 |
| MS.gene06971.t1 | MTR_5g022620 | 35.955 | 89 | 47 | 2 | 20 | 98 | 27 | 115 | 5.56e-11 | 60.5 |
| MS.gene06971.t1 | MTR_7g083060 | 41.429 | 70 | 40 | 1 | 22 | 90 | 24 | 93 | 6.00e-11 | 60.1 |
| MS.gene06971.t1 | MTR_6g026890 | 38.710 | 62 | 38 | 0 | 26 | 87 | 20 | 81 | 6.89e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06971.t1 | AT3G06130 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 5.33e-24 | 100 |
| MS.gene06971.t1 | AT5G27690 | 59.155 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 5.38e-24 | 100 |
| MS.gene06971.t1 | AT3G06130 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 6.93e-24 | 101 |
| MS.gene06971.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 7.89e-23 | 98.6 |
| MS.gene06971.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 7.89e-23 | 98.6 |
| MS.gene06971.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.16e-22 | 98.6 |
| MS.gene06971.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.16e-22 | 98.6 |
| MS.gene06971.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.16e-22 | 98.6 |
| MS.gene06971.t1 | AT1G23000 | 45.455 | 99 | 46 | 1 | 16 | 106 | 7 | 105 | 3.17e-21 | 92.8 |
| MS.gene06971.t1 | AT1G23000 | 45.455 | 99 | 46 | 1 | 16 | 106 | 67 | 165 | 6.87e-21 | 92.4 |
| MS.gene06971.t1 | AT1G56210 | 54.286 | 70 | 32 | 0 | 21 | 90 | 39 | 108 | 8.35e-20 | 89.0 |
| MS.gene06971.t1 | AT3G05220 | 55.714 | 70 | 31 | 0 | 17 | 86 | 5 | 74 | 2.07e-18 | 85.9 |
| MS.gene06971.t1 | AT5G37860 | 48.611 | 72 | 37 | 0 | 22 | 93 | 10 | 81 | 1.67e-15 | 75.5 |
| MS.gene06971.t1 | AT1G71050 | 42.029 | 69 | 40 | 0 | 22 | 90 | 28 | 96 | 2.18e-13 | 67.0 |
| MS.gene06971.t1 | AT3G56240 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.17e-12 | 63.2 |
| MS.gene06971.t1 | AT3G56240 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.17e-12 | 63.2 |
| MS.gene06971.t1 | AT1G06330 | 45.902 | 61 | 33 | 0 | 26 | 86 | 6 | 66 | 4.47e-12 | 63.5 |
| MS.gene06971.t1 | AT4G38580 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.48e-12 | 63.5 |
| MS.gene06971.t1 | AT4G38580 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.48e-12 | 63.5 |
| MS.gene06971.t1 | AT3G56891 | 43.548 | 62 | 35 | 0 | 26 | 87 | 20 | 81 | 1.08e-11 | 62.8 |
| MS.gene06971.t1 | AT3G56891 | 43.103 | 58 | 33 | 0 | 30 | 87 | 1 | 58 | 1.44e-11 | 61.6 |
| MS.gene06971.t1 | AT1G22990 | 41.429 | 70 | 40 | 1 | 22 | 90 | 29 | 98 | 2.40e-11 | 61.2 |
| MS.gene06971.t1 | AT4G08570 | 38.889 | 72 | 43 | 1 | 20 | 90 | 24 | 95 | 2.57e-11 | 61.2 |
| MS.gene06971.t1 | AT5G66110 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 2.59e-11 | 61.2 |
| MS.gene06971.t1 | AT5G66110 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 2.59e-11 | 61.2 |
| MS.gene06971.t1 | AT1G22990 | 40.299 | 67 | 39 | 1 | 25 | 90 | 27 | 93 | 4.41e-11 | 60.5 |
| MS.gene06971.t1 | AT1G66240 | 38.462 | 65 | 40 | 0 | 22 | 86 | 33 | 97 | 4.62e-11 | 59.3 |
Find 72 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGGGTGGAGGAGGTGG+AGG | 0.275287 | 7.3:+6399906 | None:intergenic |
| GCTTCATTAACTCCAAATAA+TGG | 0.285010 | 7.3:-6400203 | MS.gene06971:CDS |
| CAGCACAAGGTTACAGTTAC+TGG | 0.314426 | 7.3:-6400563 | MS.gene06971:CDS |
| AAGAGTCAAGAAAATTCTTC+AGG | 0.319616 | 7.3:-6401265 | MS.gene06971:CDS |
| TGAAACTGAAAATATTAATA+AGG | 0.330846 | 7.3:-6400426 | MS.gene06971:CDS |
| TAGTACATATGTGGTGGATA+TGG | 0.331565 | 7.3:+6400059 | None:intergenic |
| TGTTGATCAGCAGCTGGTTT+GGG | 0.352102 | 7.3:+6401496 | None:intergenic |
| ATTAGAAACACTCAAGTATC+AGG | 0.357551 | 7.3:-6401461 | MS.gene06971:intron |
| ATCAAGAAGCTTTCAAGATC+AGG | 0.368275 | 7.3:-6400518 | MS.gene06971:CDS |
| TTGTTGATCAGCAGCTGGTT+TGG | 0.374527 | 7.3:+6401495 | None:intergenic |
| GGATGAGAGGGTGGAGGAGG+TGG | 0.374539 | 7.3:+6399903 | None:intergenic |
| ATACTTGAGTGTTTCTAATC+CGG | 0.381184 | 7.3:+6401465 | None:intergenic |
| AGCACTTCTTCTTATTATGT+TGG | 0.397233 | 7.3:-6399969 | MS.gene06971:CDS |
| GCTACTGCTGGAGGAGGGTG+TGG | 0.422467 | 7.3:+6400035 | None:intergenic |
| TAAGAAGAAGTGCTAGAAAC+AGG | 0.428358 | 7.3:+6399978 | None:intergenic |
| ATTGTAGCTTTGTCACATAA+TGG | 0.433393 | 7.3:+6399824 | None:intergenic |
| TGATGACCATAGCTGTTGAT+TGG | 0.433870 | 7.3:+6399882 | None:intergenic |
| GGTGGTGCTACTGCTGGAGG+AGG | 0.445055 | 7.3:+6400029 | None:intergenic |
| CCAGCAGTAGCACCACCCTA+TGG | 0.447198 | 7.3:-6400023 | MS.gene06971:CDS |
| ATTGGATGAGAGGGTGGAGG+AGG | 0.450211 | 7.3:+6399900 | None:intergenic |
| GCATGCTGCTGAGGAAGTAC+TGG | 0.452781 | 7.3:+6400089 | None:intergenic |
| GATCACAAAGAAGGTCATAA+TGG | 0.457322 | 7.3:-6400299 | MS.gene06971:CDS |
| ACAGAACAGAAATTGATTCT+CGG | 0.466079 | 7.3:-6400586 | MS.gene06971:CDS |
| GGAGGCATAATAATTTCCTT+AGG | 0.468365 | 7.3:+6400110 | None:intergenic |
| AGTACATATGTGGTGGATAT+GGG | 0.469995 | 7.3:+6400060 | None:intergenic |
| TTAGCATGCATAGGCATGAC+AGG | 0.475394 | 7.3:+6399942 | None:intergenic |
| AAAATTCTTCAGGGCATTGA+AGG | 0.479304 | 7.3:-6401255 | MS.gene06971:intron |
| TACTTGAGTGTTTCTAATCC+GGG | 0.491731 | 7.3:+6401466 | None:intergenic |
| CATAATAATTTCCTTAGGAA+TGG | 0.491755 | 7.3:+6400115 | None:intergenic |
| GGAACTTGTTGATCAGCAGC+TGG | 0.496704 | 7.3:+6401490 | None:intergenic |
| TGTATAGATGATGCAATTGC+AGG | 0.502278 | 7.3:-6400344 | MS.gene06971:CDS |
| CCATAGGGTGGTGCTACTGC+TGG | 0.507340 | 7.3:+6400023 | None:intergenic |
| AAATATTAATAAGGAGATCA+AGG | 0.511134 | 7.3:-6400417 | MS.gene06971:CDS |
| CAGGGAAATCAGTAGAACTT+TGG | 0.517951 | 7.3:-6400499 | MS.gene06971:CDS |
| GAAGATTCAGATCACAAAGA+AGG | 0.518960 | 7.3:-6400308 | MS.gene06971:CDS |
| GAGAGGGTGGAGGAGGTGGA+GGG | 0.528150 | 7.3:+6399907 | None:intergenic |
| TCAAGAAGCTTTCAAGATCA+GGG | 0.538607 | 7.3:-6400517 | MS.gene06971:CDS |
| GATGCAATTGCAGGTGATGA+TGG | 0.539060 | 7.3:-6400335 | MS.gene06971:CDS |
| TAGGGTGGTGCTACTGCTGG+AGG | 0.544543 | 7.3:+6400026 | None:intergenic |
| GTGGTGCTACTGCTGGAGGA+GGG | 0.547041 | 7.3:+6400030 | None:intergenic |
| CAGCAGTAGCACCACCCTAT+GGG | 0.554674 | 7.3:-6400022 | MS.gene06971:CDS |
| TTGATTGGATGAGAGGGTGG+AGG | 0.558090 | 7.3:+6399897 | None:intergenic |
| GATAATAACAATAAAAGTGA+GGG | 0.562957 | 7.3:-6400275 | MS.gene06971:CDS |
| TGTGTTATAGCTTAACCCAT+AGG | 0.565506 | 7.3:+6400007 | None:intergenic |
| GTGTTATAGCTTAACCCATA+GGG | 0.565951 | 7.3:+6400008 | None:intergenic |
| AGAGTCAAGAAAATTCTTCA+GGG | 0.568811 | 7.3:-6401264 | MS.gene06971:CDS |
| AAAAGTGAATGCCATTCCTA+AGG | 0.569713 | 7.3:-6400126 | MS.gene06971:CDS |
| TTAACTCCAAATAATGGAGG+AGG | 0.576698 | 7.3:-6400197 | MS.gene06971:CDS |
| GTTGGTGAAAGTAGTCATGA+AGG | 0.580432 | 7.3:-6400368 | MS.gene06971:CDS |
| GGGTTATAAGCATGCTGCTG+AGG | 0.582921 | 7.3:+6400080 | None:intergenic |
| GCTGATCAACAAGTTCCTCC+CGG | 0.583544 | 7.3:-6401484 | MS.gene06971:CDS |
| TCTCATCCAATCAACAGCTA+TGG | 0.586584 | 7.3:-6399888 | MS.gene06971:CDS |
| AATGATCATGAAGAATATGA+AGG | 0.589711 | 7.3:-6399858 | MS.gene06971:CDS |
| TGATAATAACAATAAAAGTG+AGG | 0.591536 | 7.3:-6400276 | MS.gene06971:CDS |
| GATCATGAAGAATATGAAGG+TGG | 0.598780 | 7.3:-6399855 | MS.gene06971:CDS |
| CTGTTGATTGGATGAGAGGG+TGG | 0.603779 | 7.3:+6399894 | None:intergenic |
| AATTGATTCTCGGCAGCACA+AGG | 0.604243 | 7.3:-6400576 | MS.gene06971:CDS |
| AATAACAATAAAAGTGAGGG+TGG | 0.610406 | 7.3:-6400272 | MS.gene06971:CDS |
| GGGTGTGGATAGTACATATG+TGG | 0.614125 | 7.3:+6400050 | None:intergenic |
| TGCTGCTGAGGAAGTACTGG+AGG | 0.614651 | 7.3:+6400092 | None:intergenic |
| CTAGAGTAATTAGCATGCAT+AGG | 0.625509 | 7.3:+6399933 | None:intergenic |
| AAAGTCTTGATCCACTGCGA+CGG | 0.628481 | 7.3:-6401297 | MS.gene06971:CDS |
| AAGAACAGTACTGAACAAGT+TGG | 0.630407 | 7.3:-6400386 | MS.gene06971:CDS |
| TGTGGATAGTACATATGTGG+TGG | 0.633196 | 7.3:+6400053 | None:intergenic |
| TAGCATGCATAGGCATGACA+GGG | 0.638724 | 7.3:+6399943 | None:intergenic |
| ATAGCTGTTGATTGGATGAG+AGG | 0.644634 | 7.3:+6399890 | None:intergenic |
| TAGCTGTTGATTGGATGAGA+GGG | 0.658334 | 7.3:+6399891 | None:intergenic |
| TCATTAACTCCAAATAATGG+AGG | 0.678633 | 7.3:-6400200 | MS.gene06971:CDS |
| TTATAGCTTAACCCATAGGG+TGG | 0.684519 | 7.3:+6400011 | None:intergenic |
| TTGAGTGTTTCTAATCCGGG+AGG | 0.702857 | 7.3:+6401469 | None:intergenic |
| GGTTACAGTTACTGGCAACG+TGG | 0.704095 | 7.3:-6400555 | MS.gene06971:CDS |
| AGCATGCATAGGCATGACAG+GGG | 0.720799 | 7.3:+6399944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCTTCAAAATCAAA+AGG | - | chr7.3:6400892-6400911 | MS.gene06971:intron | 15.0% |
| !! | TAATAGCTTATTAAACATAT+TGG | - | chr7.3:6400385-6400404 | MS.gene06971:CDS | 15.0% |
| !! | TATATTTGATTAAAGTCTAA+CGG | - | chr7.3:6400694-6400713 | MS.gene06971:intron | 15.0% |
| !! | TGAAACTGAAAATATTAATA+AGG | - | chr7.3:6400915-6400934 | MS.gene06971:intron | 15.0% |
| !! | AAATATTAATAAGGAGATCA+AGG | - | chr7.3:6400924-6400943 | MS.gene06971:intron | 20.0% |
| !! | AAGAAAAAGAAAAACAAAAG+TGG | - | chr7.3:6401111-6401130 | MS.gene06971:intron | 20.0% |
| !! | CTGATAAAATAAATACCATT+AGG | + | chr7.3:6400327-6400346 | None:intergenic | 20.0% |
| !! | GATAATAACAATAAAAGTGA+GGG | - | chr7.3:6401066-6401085 | MS.gene06971:intron | 20.0% |
| !! | TGATAATAACAATAAAAGTG+AGG | - | chr7.3:6401065-6401084 | MS.gene06971:intron | 20.0% |
| !!! | TATATCATAGTTCTAAATTG+CGG | + | chr7.3:6400276-6400295 | None:intergenic | 20.0% |
| ! | AATGATCATGAAGAATATGA+AGG | - | chr7.3:6401483-6401502 | MS.gene06971:CDS | 25.0% |
| ! | CATAATAATTTCCTTAGGAA+TGG | + | chr7.3:6401229-6401248 | None:intergenic | 25.0% |
| ! | CATGTAATTAACTAAATTCC+AGG | + | chr7.3:6400458-6400477 | None:intergenic | 25.0% |
| !! | ATATTTTTCTGAGTACCTAA+TGG | - | chr7.3:6400309-6400328 | MS.gene06971:CDS | 25.0% |
| !!! | GATTTTTTATCTTTCTTCTC+AGG | + | chr7.3:6400880-6400899 | None:intergenic | 25.0% |
| AAGAGTCAAGAAAATTCTTC+AGG | - | chr7.3:6400076-6400095 | MS.gene06971:CDS | 30.0% | |
| AATAACAATAAAAGTGAGGG+TGG | - | chr7.3:6401069-6401088 | MS.gene06971:intron | 30.0% | |
| AATATACGTAAGAGTCATAC+AGG | + | chr7.3:6400680-6400699 | None:intergenic | 30.0% | |
| AATGAAGACAAATACAACTG+AGG | - | chr7.3:6400190-6400209 | MS.gene06971:CDS | 30.0% | |
| AGAGTCAAGAAAATTCTTCA+GGG | - | chr7.3:6400077-6400096 | MS.gene06971:CDS | 30.0% | |
| AGCACTTCTTCTTATTATGT+TGG | - | chr7.3:6401372-6401391 | MS.gene06971:intron | 30.0% | |
| ATGATTGTCACGGATATATA+GGG | - | chr7.3:6400728-6400747 | MS.gene06971:intron | 30.0% | |
| ATTAGAAACACTCAAGTATC+AGG | - | chr7.3:6399880-6399899 | MS.gene06971:CDS | 30.0% | |
| ATTGACATGATCAATAAACC+TGG | - | chr7.3:6400437-6400456 | MS.gene06971:CDS | 30.0% | |
| CAATTATGGCTGCAATATAA+AGG | + | chr7.3:6400243-6400262 | None:intergenic | 30.0% | |
| GCTTCATTAACTCCAAATAA+TGG | - | chr7.3:6401138-6401157 | MS.gene06971:intron | 30.0% | |
| TATATCCGTGACAATCATAA+CGG | + | chr7.3:6400726-6400745 | None:intergenic | 30.0% | |
| TATGATTGTCACGGATATAT+AGG | - | chr7.3:6400727-6400746 | MS.gene06971:intron | 30.0% | |
| TCATTAACTCCAAATAATGG+AGG | - | chr7.3:6401141-6401160 | MS.gene06971:intron | 30.0% | |
| TTAGAAGACTAACACTTAAG+TGG | + | chr7.3:6400368-6400387 | None:intergenic | 30.0% | |
| TTATATTGCAGCCATAATTG+CGG | - | chr7.3:6400243-6400262 | MS.gene06971:CDS | 30.0% | |
| ! | ACAGAACAGAAATTGATTCT+CGG | - | chr7.3:6400755-6400774 | MS.gene06971:intron | 30.0% |
| ! | ATACTTGAGTGTTTCTAATC+CGG | + | chr7.3:6399879-6399898 | None:intergenic | 30.0% |
| ! | TTTTTATCTTTCTTCTCAGG+AGG | + | chr7.3:6400877-6400896 | None:intergenic | 30.0% |
| !!! | TTCACTTTTTCAAGTACTTG+TGG | + | chr7.3:6401204-6401223 | None:intergenic | 30.0% |
| AAAAGTGAATGCCATTCCTA+AGG | - | chr7.3:6401215-6401234 | MS.gene06971:intron | 35.0% | |
| AGCAAAGAATAGATTCAGGA+GGG | + | chr7.3:6399961-6399980 | None:intergenic | 35.0% | |
| ATCAAGAAGCTTTCAAGATC+AGG | - | chr7.3:6400823-6400842 | MS.gene06971:intron | 35.0% | |
| ATCCACTTCAGACTTTATCA+TGG | - | chr7.3:6400513-6400532 | MS.gene06971:CDS | 35.0% | |
| ATCCATGATAAAGTCTGAAG+TGG | + | chr7.3:6400518-6400537 | None:intergenic | 35.0% | |
| CTAGAGTAATTAGCATGCAT+AGG | + | chr7.3:6401411-6401430 | None:intergenic | 35.0% | |
| GAAGATTCAGATCACAAAGA+AGG | - | chr7.3:6401033-6401052 | MS.gene06971:intron | 35.0% | |
| GATCACAAAGAAGGTCATAA+TGG | - | chr7.3:6401042-6401061 | MS.gene06971:intron | 35.0% | |
| GATCATGAAGAATATGAAGG+TGG | - | chr7.3:6401486-6401505 | MS.gene06971:CDS | 35.0% | |
| GTGTTATAGCTTAACCCATA+GGG | + | chr7.3:6401336-6401355 | None:intergenic | 35.0% | |
| GTTGAGCAAAGAATAGATTC+AGG | + | chr7.3:6399965-6399984 | None:intergenic | 35.0% | |
| TCAAGAAGCTTTCAAGATCA+GGG | - | chr7.3:6400824-6400843 | MS.gene06971:intron | 35.0% | |
| TGATTGTCACGGATATATAG+GGG | - | chr7.3:6400729-6400748 | MS.gene06971:intron | 35.0% | |
| TGTATAGATGATGCAATTGC+AGG | - | chr7.3:6400997-6401016 | MS.gene06971:intron | 35.0% | |
| TGTGTTATAGCTTAACCCAT+AGG | + | chr7.3:6401337-6401356 | None:intergenic | 35.0% | |
| TTGGTTAAACAGTAGTGTCT+TGG | - | chr7.3:6400404-6400423 | MS.gene06971:CDS | 35.0% | |
| ! | AAGAACAGTACTGAACAAGT+TGG | - | chr7.3:6400955-6400974 | MS.gene06971:intron | 35.0% |
| ! | GGAGGCATAATAATTTCCTT+AGG | + | chr7.3:6401234-6401253 | None:intergenic | 35.0% |
| ! | TACTTGAGTGTTTCTAATCC+GGG | + | chr7.3:6399878-6399897 | None:intergenic | 35.0% |
| ! | TCTTTTCCTCCTCCATTATT+TGG | + | chr7.3:6401153-6401172 | None:intergenic | 35.0% |
| ! | TTAACTCCAAATAATGGAGG+AGG | - | chr7.3:6401144-6401163 | MS.gene06971:intron | 35.0% |
| !! | AAAATTCTTCAGGGCATTGA+AGG | - | chr7.3:6400086-6400105 | MS.gene06971:CDS | 35.0% |
| !! | AGTACATATGTGGTGGATAT+GGG | + | chr7.3:6401284-6401303 | None:intergenic | 35.0% |
| !! | TAAGAAGAAGTGCTAGAAAC+AGG | + | chr7.3:6401366-6401385 | None:intergenic | 35.0% |
| !! | TAGTACATATGTGGTGGATA+TGG | + | chr7.3:6401285-6401304 | None:intergenic | 35.0% |
| !! | TTAGTAGACTTGTTAGAGCA+AGG | + | chr7.3:6399933-6399952 | None:intergenic | 35.0% |
| ATGTGATCATTCTACAGACG+TGG | - | chr7.3:6400015-6400034 | MS.gene06971:CDS | 40.0% | |
| CAGGGAAATCAGTAGAACTT+TGG | - | chr7.3:6400842-6400861 | MS.gene06971:intron | 40.0% | |
| GAAGACAAATACAACTGAGG+CGG | - | chr7.3:6400193-6400212 | MS.gene06971:CDS | 40.0% | |
| GAGCAAAGAATAGATTCAGG+AGG | + | chr7.3:6399962-6399981 | None:intergenic | 40.0% | |
| GTTAAACAGTAGTGTCTTGG+CGG | - | chr7.3:6400407-6400426 | MS.gene06971:CDS | 40.0% | |
| TCAAGTTTGCAACATAACCG+CGG | + | chr7.3:6400159-6400178 | None:intergenic | 40.0% | |
| TCCAACCGTTATGATTGTCA+CGG | - | chr7.3:6400718-6400737 | MS.gene06971:intron | 40.0% | |
| TCTCATCCAATCAACAGCTA+TGG | - | chr7.3:6401453-6401472 | MS.gene06971:intron | 40.0% | |
| TGATGACCATAGCTGTTGAT+TGG | + | chr7.3:6401462-6401481 | None:intergenic | 40.0% | |
| TGTGATCATTCTACAGACGT+GGG | - | chr7.3:6400016-6400035 | MS.gene06971:CDS | 40.0% | |
| TGTGGATAGTACATATGTGG+TGG | + | chr7.3:6401291-6401310 | None:intergenic | 40.0% | |
| TTAAACAGTAGTGTCTTGGC+GGG | - | chr7.3:6400408-6400427 | MS.gene06971:CDS | 40.0% | |
| TTATAGCTTAACCCATAGGG+TGG | + | chr7.3:6401333-6401352 | None:intergenic | 40.0% | |
| ! | ATAGCTGTTGATTGGATGAG+AGG | + | chr7.3:6401454-6401473 | None:intergenic | 40.0% |
| ! | GTTGGTGAAAGTAGTCATGA+AGG | - | chr7.3:6400973-6400992 | MS.gene06971:intron | 40.0% |
| ! | TAGCTGTTGATTGGATGAGA+GGG | + | chr7.3:6401453-6401472 | None:intergenic | 40.0% |
| AAAGTCTTGATCCACTGCGA+CGG | - | chr7.3:6400044-6400063 | MS.gene06971:CDS | 45.0% | |
| AACTGAGGCGGCTGTAATTT+CGG | - | chr7.3:6400205-6400224 | MS.gene06971:CDS | 45.0% | |
| CAGCACAAGGTTACAGTTAC+TGG | - | chr7.3:6400778-6400797 | MS.gene06971:intron | 45.0% | |
| GATGCAATTGCAGGTGATGA+TGG | - | chr7.3:6401006-6401025 | MS.gene06971:intron | 45.0% | |
| GGGTGTGGATAGTACATATG+TGG | + | chr7.3:6401294-6401313 | None:intergenic | 45.0% | |
| TAGCATGCATAGGCATGACA+GGG | + | chr7.3:6401401-6401420 | None:intergenic | 45.0% | |
| TCCGTGACAATCATAACGGT+TGG | + | chr7.3:6400722-6400741 | None:intergenic | 45.0% | |
| TTAGCATGCATAGGCATGAC+AGG | + | chr7.3:6401402-6401421 | None:intergenic | 45.0% | |
| TTGTTGATCAGCAGCTGGTT+TGG | + | chr7.3:6399849-6399868 | None:intergenic | 45.0% | |
| ! | AATTGATTCTCGGCAGCACA+AGG | - | chr7.3:6400765-6400784 | MS.gene06971:intron | 45.0% |
| ! | TGTTGATCAGCAGCTGGTTT+GGG | + | chr7.3:6399848-6399867 | None:intergenic | 45.0% |
| ! | TTCTTCTCAGGAGGCTTTTC+TGG | + | chr7.3:6400868-6400887 | None:intergenic | 45.0% |
| ! | TTGAGTGTTTCTAATCCGGG+AGG | + | chr7.3:6399875-6399894 | None:intergenic | 45.0% |
| ACACACACACACACACACCA+TGG | - | chr7.3:6400120-6400139 | MS.gene06971:CDS | 50.0% | |
| AGCATGCATAGGCATGACAG+GGG | + | chr7.3:6401400-6401419 | None:intergenic | 50.0% | |
| GCTGATCAACAAGTTCCTCC+CGG | - | chr7.3:6399857-6399876 | MS.gene06971:CDS | 50.0% | |
| GGGTTATAAGCATGCTGCTG+AGG | + | chr7.3:6401264-6401283 | None:intergenic | 50.0% | |
| GGTTACAGTTACTGGCAACG+TGG | - | chr7.3:6400786-6400805 | MS.gene06971:intron | 50.0% | |
| TTGATTGGATGAGAGGGTGG+AGG | + | chr7.3:6401447-6401466 | None:intergenic | 50.0% | |
| ! | CTGTTGATTGGATGAGAGGG+TGG | + | chr7.3:6401450-6401469 | None:intergenic | 50.0% |
| ! | GCGGACTACAACCGCAATTA+TGG | + | chr7.3:6400257-6400276 | None:intergenic | 50.0% |
| !! | ATGGTTCTGAATTGCGACCG+CGG | - | chr7.3:6400139-6400158 | MS.gene06971:CDS | 50.0% |
| !! | GGAACTTGTTGATCAGCAGC+TGG | + | chr7.3:6399854-6399873 | None:intergenic | 50.0% |
| ATTGGATGAGAGGGTGGAGG+AGG | + | chr7.3:6401444-6401463 | None:intergenic | 55.0% | |
| CAGCAGTAGCACCACCCTAT+GGG | - | chr7.3:6401319-6401338 | MS.gene06971:intron | 55.0% | |
| GCGGTCGCAATTCAGAACCA+TGG | + | chr7.3:6400140-6400159 | None:intergenic | 55.0% | |
| ! | AGTAGTGTCTTGGCGGGTCT+TGG | - | chr7.3:6400414-6400433 | MS.gene06971:CDS | 55.0% |
| ! | GCATGCTGCTGAGGAAGTAC+TGG | + | chr7.3:6401255-6401274 | None:intergenic | 55.0% |
| ! | TTTTTGTGCAGCCGTCGCAG+TGG | + | chr7.3:6400058-6400077 | None:intergenic | 55.0% |
| !! | TGCTGCTGAGGAAGTACTGG+AGG | + | chr7.3:6401252-6401271 | None:intergenic | 55.0% |
| CCAGCAGTAGCACCACCCTA+TGG | - | chr7.3:6401318-6401337 | MS.gene06971:intron | 60.0% | |
| !! | CCATAGGGTGGTGCTACTGC+TGG | + | chr7.3:6401321-6401340 | None:intergenic | 60.0% |
| !! | GTGGTGCTACTGCTGGAGGA+GGG | + | chr7.3:6401314-6401333 | None:intergenic | 60.0% |
| !! | TAGGGTGGTGCTACTGCTGG+AGG | + | chr7.3:6401318-6401337 | None:intergenic | 60.0% |
| GAGAGGGTGGAGGAGGTGGA+GGG | + | chr7.3:6401437-6401456 | None:intergenic | 65.0% | |
| GCTACTGCTGGAGGAGGGTG+TGG | + | chr7.3:6401309-6401328 | None:intergenic | 65.0% | |
| GGATGAGAGGGTGGAGGAGG+TGG | + | chr7.3:6401441-6401460 | None:intergenic | 65.0% | |
| TGAGAGGGTGGAGGAGGTGG+AGG | + | chr7.3:6401438-6401457 | None:intergenic | 65.0% | |
| !! | GGTGGTGCTACTGCTGGAGG+AGG | + | chr7.3:6401315-6401334 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6399836 | 6401527 | 6399836 | ID=MS.gene06971 |
| chr7.3 | mRNA | 6399836 | 6401527 | 6399836 | ID=MS.gene06971.t1;Parent=MS.gene06971 |
| chr7.3 | exon | 6401462 | 6401527 | 6401462 | ID=MS.gene06971.t1.exon1;Parent=MS.gene06971.t1 |
| chr7.3 | CDS | 6401462 | 6401527 | 6401462 | ID=cds.MS.gene06971.t1;Parent=MS.gene06971.t1 |
| chr7.3 | exon | 6401256 | 6401331 | 6401256 | ID=MS.gene06971.t1.exon2;Parent=MS.gene06971.t1 |
| chr7.3 | CDS | 6401256 | 6401331 | 6401256 | ID=cds.MS.gene06971.t1;Parent=MS.gene06971.t1 |
| chr7.3 | exon | 6399836 | 6400614 | 6399836 | ID=MS.gene06971.t1.exon3;Parent=MS.gene06971.t1 |
| chr7.3 | CDS | 6399836 | 6400614 | 6399836 | ID=cds.MS.gene06971.t1;Parent=MS.gene06971.t1 |
| Gene Sequence |
| Protein sequence |
