Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06991.t1 | XP_003625919.2 | 96.3 | 296 | 6 | 1 | 5 | 300 | 51 | 341 | 5.00E-161 | 577 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06991.t1 | Q9C942 | 40.9 | 230 | 135 | 1 | 15 | 243 | 93 | 322 | 1.3e-45 | 184.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06991.t1 | G7KRW6 | 96.3 | 296 | 6 | 1 | 5 | 300 | 51 | 341 | 3.6e-161 | 577.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92221 | MS.gene06991 | PPI |
| MS.gene54469 | MS.gene06991 | PPI |
| MS.gene76909 | MS.gene06991 | PPI |
| MS.gene80965 | MS.gene06991 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06991.t1 | MTR_7g108770 | 96.284 | 296 | 6 | 1 | 5 | 300 | 51 | 341 | 0.0 | 587 |
| MS.gene06991.t1 | MTR_1g088470 | 72.549 | 255 | 69 | 1 | 5 | 258 | 52 | 306 | 2.16e-137 | 391 |
| MS.gene06991.t1 | MTR_1g115535 | 53.814 | 236 | 109 | 0 | 9 | 244 | 62 | 297 | 1.22e-95 | 285 |
| MS.gene06991.t1 | MTR_1g115535 | 53.814 | 236 | 109 | 0 | 9 | 244 | 58 | 293 | 1.23e-95 | 285 |
| MS.gene06991.t1 | MTR_6g018490 | 49.789 | 237 | 119 | 0 | 9 | 245 | 102 | 338 | 8.45e-83 | 253 |
| MS.gene06991.t1 | MTR_6g025610 | 49.789 | 237 | 119 | 0 | 9 | 245 | 92 | 328 | 1.67e-82 | 252 |
| MS.gene06991.t1 | MTR_7g007260 | 47.660 | 235 | 123 | 0 | 9 | 243 | 103 | 337 | 3.41e-79 | 244 |
| MS.gene06991.t1 | MTR_1g110670 | 44.444 | 234 | 130 | 0 | 9 | 242 | 122 | 355 | 2.03e-74 | 232 |
| MS.gene06991.t1 | MTR_6g084420 | 46.250 | 240 | 128 | 1 | 9 | 247 | 102 | 341 | 3.28e-74 | 231 |
| MS.gene06991.t1 | MTR_5g056550 | 45.299 | 234 | 128 | 0 | 9 | 242 | 156 | 389 | 5.19e-73 | 230 |
| MS.gene06991.t1 | MTR_4g089170 | 46.809 | 235 | 125 | 0 | 8 | 242 | 87 | 321 | 4.44e-69 | 218 |
| MS.gene06991.t1 | MTR_7g007260 | 43.830 | 235 | 119 | 1 | 9 | 243 | 103 | 324 | 6.54e-67 | 212 |
| MS.gene06991.t1 | MTR_7g007260 | 43.644 | 236 | 119 | 2 | 9 | 243 | 103 | 325 | 8.57e-66 | 209 |
| MS.gene06991.t1 | MTR_5g056550 | 39.744 | 234 | 108 | 1 | 9 | 242 | 156 | 356 | 9.22e-57 | 187 |
| MS.gene06991.t1 | MTR_1g095110 | 38.956 | 249 | 148 | 4 | 7 | 253 | 78 | 324 | 8.42e-56 | 183 |
| MS.gene06991.t1 | MTR_4g127220 | 37.975 | 237 | 146 | 1 | 8 | 243 | 77 | 313 | 3.04e-54 | 179 |
| MS.gene06991.t1 | MTR_6g071475 | 35.217 | 230 | 139 | 6 | 15 | 242 | 167 | 388 | 3.23e-30 | 117 |
| MS.gene06991.t1 | MTR_3g109870 | 32.195 | 205 | 127 | 6 | 41 | 242 | 157 | 352 | 1.04e-21 | 94.0 |
| MS.gene06991.t1 | MTR_5g056550 | 42.157 | 102 | 57 | 1 | 9 | 110 | 156 | 255 | 3.26e-21 | 91.3 |
| MS.gene06991.t1 | MTR_5g056550 | 43.333 | 90 | 51 | 0 | 9 | 98 | 156 | 245 | 4.12e-20 | 87.8 |
| MS.gene06991.t1 | MTR_1g110680 | 41.489 | 94 | 47 | 2 | 151 | 242 | 15 | 102 | 1.70e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06991.t1 | AT3G62860 | 67.677 | 297 | 93 | 2 | 5 | 299 | 9 | 304 | 4.09e-154 | 433 |
| MS.gene06991.t1 | AT3G62860 | 67.677 | 297 | 93 | 2 | 5 | 299 | 52 | 347 | 7.35e-153 | 431 |
| MS.gene06991.t1 | AT2G47630 | 66.221 | 299 | 93 | 2 | 5 | 298 | 9 | 304 | 5.89e-148 | 417 |
| MS.gene06991.t1 | AT2G47630 | 66.221 | 299 | 93 | 2 | 5 | 298 | 29 | 324 | 8.04e-148 | 418 |
| MS.gene06991.t1 | AT2G47630 | 66.221 | 299 | 93 | 2 | 5 | 298 | 54 | 349 | 7.33e-147 | 416 |
| MS.gene06991.t1 | AT2G39420 | 60.000 | 235 | 94 | 0 | 9 | 243 | 59 | 293 | 2.84e-101 | 300 |
| MS.gene06991.t1 | AT3G55180 | 56.379 | 243 | 106 | 0 | 4 | 246 | 49 | 291 | 1.28e-98 | 293 |
| MS.gene06991.t1 | AT2G39400 | 54.733 | 243 | 110 | 0 | 6 | 248 | 50 | 292 | 3.99e-96 | 286 |
| MS.gene06991.t1 | AT2G39410 | 55.462 | 238 | 106 | 0 | 9 | 246 | 59 | 296 | 7.49e-96 | 286 |
| MS.gene06991.t1 | AT3G55190 | 46.617 | 266 | 135 | 2 | 9 | 273 | 59 | 318 | 1.23e-82 | 252 |
| MS.gene06991.t1 | AT5G16120 | 46.939 | 245 | 130 | 0 | 9 | 253 | 104 | 348 | 5.82e-78 | 241 |
| MS.gene06991.t1 | AT5G16120 | 46.939 | 245 | 130 | 0 | 9 | 253 | 104 | 348 | 5.82e-78 | 241 |
| MS.gene06991.t1 | AT5G16120 | 46.939 | 245 | 130 | 0 | 9 | 253 | 122 | 366 | 1.05e-77 | 241 |
| MS.gene06991.t1 | AT5G16120 | 46.939 | 245 | 130 | 0 | 9 | 253 | 136 | 380 | 1.39e-77 | 241 |
| MS.gene06991.t1 | AT1G11090 | 47.660 | 235 | 123 | 0 | 8 | 242 | 78 | 312 | 3.78e-76 | 236 |
| MS.gene06991.t1 | AT1G77420 | 42.017 | 238 | 138 | 0 | 9 | 246 | 143 | 380 | 4.28e-67 | 214 |
| MS.gene06991.t1 | AT2G39400 | 54.438 | 169 | 77 | 0 | 9 | 177 | 53 | 221 | 3.53e-63 | 200 |
| MS.gene06991.t1 | AT1G52760 | 40.870 | 230 | 135 | 1 | 15 | 243 | 93 | 322 | 3.12e-57 | 187 |
| MS.gene06991.t1 | AT5G14980 | 38.723 | 235 | 142 | 2 | 8 | 241 | 79 | 312 | 1.31e-55 | 183 |
| MS.gene06991.t1 | AT5G19290 | 34.568 | 243 | 157 | 2 | 8 | 249 | 80 | 321 | 5.12e-50 | 169 |
| MS.gene06991.t1 | AT1G73480 | 33.054 | 239 | 148 | 6 | 9 | 244 | 233 | 462 | 2.09e-33 | 127 |
| MS.gene06991.t1 | AT1G18360 | 32.773 | 238 | 150 | 5 | 9 | 244 | 152 | 381 | 3.39e-31 | 120 |
| MS.gene06991.t1 | AT5G11650 | 33.333 | 237 | 144 | 7 | 9 | 241 | 149 | 375 | 2.45e-29 | 115 |
Find 55 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATGCCCTGCTTACTTC+TGG | 0.212230 | 7.3:-6256729 | None:intergenic |
| TTCAGTTCTCCAAGAGTATA+AGG | 0.225869 | 7.3:+6255290 | MS.gene06991:intron |
| TACACCATACACAGCATATT+TGG | 0.251718 | 7.3:-6255085 | None:intergenic |
| TGCTGGTTCTTAACATTTCT+AGG | 0.256347 | 7.3:-6255922 | None:intergenic |
| AAACCTCACCCTTTCTCGTT+TGG | 0.334146 | 7.3:-6255719 | None:intergenic |
| TGCATAGTTAACCTTGTATA+AGG | 0.346053 | 7.3:-6255960 | None:intergenic |
| TCGTTTGGCCGGATCTTTGA+AGG | 0.412045 | 7.3:-6255704 | None:intergenic |
| GTTAAACCATGCCACATTCC+AGG | 0.412914 | 7.3:-6256792 | None:intergenic |
| TCAGTTCTCCAAGAGTATAA+GGG | 0.415803 | 7.3:+6255291 | MS.gene06991:intron |
| ATAATGCCCTGCTTACTTCT+GGG | 0.425265 | 7.3:-6256728 | None:intergenic |
| TCATGGTTACAAGTCTCAAT+TGG | 0.427472 | 7.3:-6256912 | None:intergenic |
| CCTTGTCGCGCCCATGTGTA+AGG | 0.433319 | 7.3:+6255404 | MS.gene06991:CDS |
| AAAATTGATGACATCCTTTG+TGG | 0.443208 | 7.3:-6255680 | None:intergenic |
| AGACTATGAAACAATCTCAT+AGG | 0.443501 | 7.3:+6256970 | MS.gene06991:CDS |
| GTTCTTGTATGGAGAGTCCA+TGG | 0.446963 | 7.3:+6255323 | MS.gene06991:CDS |
| AATTGGATGTGTAGAATCAT+AGG | 0.453394 | 7.3:-6256895 | None:intergenic |
| GCTGGTTCTTAACATTTCTA+GGG | 0.456674 | 7.3:-6255921 | None:intergenic |
| CTCACCCTTTCTCGTTTGGC+CGG | 0.464749 | 7.3:-6255715 | None:intergenic |
| GGAAAAGCTAGGTTCTTGTA+TGG | 0.474126 | 7.3:+6255312 | MS.gene06991:CDS |
| AAGATCCGGCCAAACGAGAA+AGG | 0.479104 | 7.3:+6255710 | MS.gene06991:CDS |
| AGTTATCTTTGTGGCTTGAA+AGG | 0.484287 | 7.3:+6256999 | MS.gene06991:CDS |
| TGACAGACCCAGAAGTAAGC+AGG | 0.496194 | 7.3:+6256721 | MS.gene06991:CDS |
| GTCTTTGCTGATGATACAAC+TGG | 0.500765 | 7.3:-6256951 | None:intergenic |
| AGAATCATAGGCAGCATTGT+TGG | 0.502217 | 7.3:-6256883 | None:intergenic |
| GTGGGAACTATCTTCCACTT+TGG | 0.507430 | 7.3:-6255661 | None:intergenic |
| ATGTGGCATGGTTTAACATC+TGG | 0.519462 | 7.3:+6256798 | MS.gene06991:CDS |
| TGATATACCAGGACAAGCCC+AGG | 0.533416 | 7.3:+6255888 | MS.gene06991:CDS |
| AGATCCGGCCAAACGAGAAA+GGG | 0.539898 | 7.3:+6255711 | MS.gene06991:CDS |
| AAATTGATGACATCCTTTGT+GGG | 0.543046 | 7.3:-6255679 | None:intergenic |
| GGTGTCTTCAAGATTCATGC+TGG | 0.560620 | 7.3:-6255939 | None:intergenic |
| TCTTGAAGACACCTTATACA+AGG | 0.565278 | 7.3:+6255949 | MS.gene06991:CDS |
| TTAAACCATGCCACATTCCA+GGG | 0.567753 | 7.3:-6256791 | None:intergenic |
| TACAACGTGTACCTTACACA+TGG | 0.570866 | 7.3:-6255415 | None:intergenic |
| GACAGACCCAGAAGTAAGCA+GGG | 0.576720 | 7.3:+6256722 | MS.gene06991:CDS |
| TGTGCCAAATATGCTGTGTA+TGG | 0.584688 | 7.3:+6255081 | MS.gene06991:CDS |
| AAGAGTATAAGGGAAAAGCT+AGG | 0.585965 | 7.3:+6255301 | MS.gene06991:CDS |
| TAGACTAACTGCTCCACCCA+TGG | 0.587925 | 7.3:-6255340 | None:intergenic |
| TTTCATTCTAATTTGCTGAG+TGG | 0.595665 | 7.3:-6257037 | None:intergenic |
| CCTTACACATGGGCGCGACA+AGG | 0.597684 | 7.3:-6255404 | None:intergenic |
| TTCTTGTATGGAGAGTCCAT+GGG | 0.602502 | 7.3:+6255324 | MS.gene06991:CDS |
| GAAGGACATGGACAATCTGA+AGG | 0.609980 | 7.3:+6255114 | MS.gene06991:CDS |
| TTGTATGGAGAGTCCATGGG+TGG | 0.611978 | 7.3:+6255327 | MS.gene06991:CDS |
| TTGAAGATATCATACCAAAG+TGG | 0.612746 | 7.3:+6255647 | MS.gene06991:CDS |
| TTAAATTGTACCCTGGAATG+TGG | 0.615904 | 7.3:+6256781 | MS.gene06991:CDS |
| ACAACGTGTACCTTACACAT+GGG | 0.623130 | 7.3:-6255414 | None:intergenic |
| TCAATATGTTGATGACAACT+TGG | 0.624135 | 7.3:-6255618 | None:intergenic |
| GTGTCAATGTCTCATTGTCA+TGG | 0.624411 | 7.3:-6256929 | None:intergenic |
| AAGACAATTAAATTGTACCC+TGG | 0.629319 | 7.3:+6256774 | MS.gene06991:CDS |
| GTGTATGGTGTAGATTATGA+AGG | 0.634571 | 7.3:+6255096 | MS.gene06991:CDS |
| GGTGTAGATTATGAAGGACA+TGG | 0.638840 | 7.3:+6255102 | MS.gene06991:CDS |
| TTGTACCCTGGAATGTGGCA+TGG | 0.642467 | 7.3:+6256786 | MS.gene06991:CDS |
| ATGATGGGTACTACAGAATG+TGG | 0.653378 | 7.3:+6255045 | None:intergenic |
| GTGGAAGATAGTTCCCACAA+AGG | 0.681811 | 7.3:+6255666 | MS.gene06991:CDS |
| ATGTTGATGACAACTTGGTG+TGG | 0.690265 | 7.3:-6255613 | None:intergenic |
| GTACTACAGAATGTGGAGTG+CGG | 0.724286 | 7.3:+6255052 | MS.gene06991:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTAATCTATAATTG+AGG | + | chr7.3:6255774-6255793 | MS.gene06991:intron | 10.0% |
| !! | ATATGGATTTATAATTAACT+TGG | - | chr7.3:6255510-6255529 | None:intergenic | 15.0% |
| !! | TAAACAATTTAACGTTTATT+TGG | - | chr7.3:6256527-6256546 | None:intergenic | 15.0% |
| !!! | TTTTCTAAACAAAAAGTATA+TGG | - | chr7.3:6255527-6255546 | None:intergenic | 15.0% |
| !! | AAAATCAATCCTATTCAAAA+AGG | - | chr7.3:6256337-6256356 | None:intergenic | 20.0% |
| !! | AATGAATGATGAAACTATAA+TGG | - | chr7.3:6255259-6255278 | None:intergenic | 20.0% |
| !! | CATATCATACCTAATTTATT+TGG | + | chr7.3:6256631-6256650 | MS.gene06991:intron | 20.0% |
| !! | CTAAAGTAAACATGAAAATA+TGG | + | chr7.3:6255555-6255574 | MS.gene06991:intron | 20.0% |
| !! | GTAAAAAATCTTTACATTAC+AGG | + | chr7.3:6255476-6255495 | MS.gene06991:intron | 20.0% |
| !!! | ACTTATTTCTATAAATTCTC+CGG | + | chr7.3:6256143-6256162 | MS.gene06991:intron | 20.0% |
| !!! | ACTTATTTGAACTTTTTTTG+AGG | + | chr7.3:6256029-6256048 | MS.gene06991:intron | 20.0% |
| !!! | ATAATCAAGTTACCTTTTTT+CGG | + | chr7.3:6256560-6256579 | MS.gene06991:intron | 20.0% |
| !!! | ATCACTTTTAGTTTTTGTTA+CGG | + | chr7.3:6256496-6256515 | MS.gene06991:intron | 20.0% |
| !!! | CAAATTGTTTTTCTTTTAAC+CGG | + | chr7.3:6256308-6256327 | MS.gene06991:intron | 20.0% |
| !!! | CTTATTTGAACTTTTTTTGA+GGG | + | chr7.3:6256030-6256049 | MS.gene06991:intron | 20.0% |
| !!! | GTGTTAATTTGAATATTTGT+TGG | - | chr7.3:6256590-6256609 | None:intergenic | 20.0% |
| ! | AATGTGAATCACTTTATGTT+TGG | - | chr7.3:6256472-6256491 | None:intergenic | 25.0% |
| ! | ACCTAATTTATTTGGTACTT+TGG | + | chr7.3:6256639-6256658 | MS.gene06991:intron | 25.0% |
| ! | CCTAATTTATTTGGTACTTT+GGG | + | chr7.3:6256640-6256659 | MS.gene06991:intron | 25.0% |
| ! | CGGTTAAAAGAAAAACAATT+TGG | - | chr7.3:6256310-6256329 | None:intergenic | 25.0% |
| ! | GGCTAAAAATCAAAATTTAG+AGG | - | chr7.3:6256406-6256425 | None:intergenic | 25.0% |
| ! | TTCAGATATATTTACGAGAA+AGG | - | chr7.3:6255752-6255771 | None:intergenic | 25.0% |
| !! | AAGTTAGAATCAATTTTGGA+AGG | - | chr7.3:6256360-6256379 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAATTCTCC+GGG | + | chr7.3:6256144-6256163 | MS.gene06991:intron | 25.0% |
| !!! | CTTCAAGTTAGAATCAATTT+TGG | - | chr7.3:6256364-6256383 | None:intergenic | 25.0% |
| !!! | GTGTATGTTTGTTTCTATTT+TGG | + | chr7.3:6256278-6256297 | MS.gene06991:intron | 25.0% |
| !!! | TATGTTTGTTTCTATTTTGG+AGG | + | chr7.3:6256281-6256300 | MS.gene06991:intron | 25.0% |
| !!! | TTTTTGAAGACATCATAACA+TGG | + | chr7.3:6256847-6256866 | MS.gene06991:CDS | 25.0% |
| AAGACAATTAAATTGTACCC+TGG | + | chr7.3:6256774-6256793 | MS.gene06991:CDS | 30.0% | |
| AATTGGATGTGTAGAATCAT+AGG | - | chr7.3:6256898-6256917 | None:intergenic | 30.0% | |
| AATTTATTTGGTACTTTGGG+TGG | + | chr7.3:6256643-6256662 | MS.gene06991:intron | 30.0% | |
| AGACTATGAAACAATCTCAT+AGG | + | chr7.3:6256970-6256989 | MS.gene06991:CDS | 30.0% | |
| ATGCAATACAAAAAATGGGA+AGG | - | chr7.3:6256685-6256704 | None:intergenic | 30.0% | |
| CTCCATGCAATACAAAAAAT+GGG | - | chr7.3:6256689-6256708 | None:intergenic | 30.0% | |
| TACACTCAAAAGATTAGACA+AGG | - | chr7.3:6255225-6255244 | None:intergenic | 30.0% | |
| TCTCCATGCAATACAAAAAA+TGG | - | chr7.3:6256690-6256709 | None:intergenic | 30.0% | |
| TGCATAGTTAACCTTGTATA+AGG | - | chr7.3:6255963-6255982 | None:intergenic | 30.0% | |
| TTGAAGATATCATACCAAAG+TGG | + | chr7.3:6255647-6255666 | MS.gene06991:CDS | 30.0% | |
| ! | AAAATTGATGACATCCTTTG+TGG | - | chr7.3:6255683-6255702 | None:intergenic | 30.0% |
| ! | AAATTGATGACATCCTTTGT+GGG | - | chr7.3:6255682-6255701 | None:intergenic | 30.0% |
| ! | CCCAAAGTACCAAATAAATT+AGG | - | chr7.3:6256643-6256662 | None:intergenic | 30.0% |
| ! | TGAGTTGAACAAGAAAATTG+AGG | - | chr7.3:6256427-6256446 | None:intergenic | 30.0% |
| !! | GAAAAACAAGTTGATATACC+AGG | + | chr7.3:6255877-6255896 | MS.gene06991:CDS | 30.0% |
| !! | TAGTCTACTTTTGCATCAAA+AGG | + | chr7.3:6255356-6255375 | MS.gene06991:CDS | 30.0% |
| !! | TCAATATGTTGATGACAACT+TGG | - | chr7.3:6255621-6255640 | None:intergenic | 30.0% |
| !!! | ACTTTTTCAATGTTGTCATC+TGG | - | chr7.3:6256828-6256847 | None:intergenic | 30.0% |
| !!! | TTCCCATTTTTTGTATTGCA+TGG | + | chr7.3:6256684-6256703 | MS.gene06991:CDS | 30.0% |
| AGGCGAAAAAGTTATCTTTG+TGG | + | chr7.3:6256990-6257009 | MS.gene06991:CDS | 35.0% | |
| AGTTATCTTTGTGGCTTGAA+AGG | + | chr7.3:6256999-6257018 | MS.gene06991:CDS | 35.0% | |
| GTGTATGGTGTAGATTATGA+AGG | + | chr7.3:6255096-6255115 | MS.gene06991:CDS | 35.0% | |
| TACACCATACACAGCATATT+TGG | - | chr7.3:6255088-6255107 | None:intergenic | 35.0% | |
| TATACCACTTCCTTTGACAA+TGG | + | chr7.3:6255843-6255862 | MS.gene06991:intron | 35.0% | |
| TCATGGTTACAAGTCTCAAT+TGG | - | chr7.3:6256915-6256934 | None:intergenic | 35.0% | |
| TCTTGAAGACACCTTATACA+AGG | + | chr7.3:6255949-6255968 | MS.gene06991:CDS | 35.0% | |
| TTAAATTGTACCCTGGAATG+TGG | + | chr7.3:6256781-6256800 | MS.gene06991:CDS | 35.0% | |
| TTATCTGCAACCATTGTCAA+AGG | - | chr7.3:6255856-6255875 | None:intergenic | 35.0% | |
| TTTGACAATGGTTGCAGATA+AGG | + | chr7.3:6255855-6255874 | MS.gene06991:intron | 35.0% | |
| ! | AAGAGTATAAGGGAAAAGCT+AGG | + | chr7.3:6255301-6255320 | MS.gene06991:CDS | 35.0% |
| ! | ATCAAAAGGACCCTTCTTTT+TGG | + | chr7.3:6255370-6255389 | MS.gene06991:CDS | 35.0% |
| ! | CAATTTTGCCTTCAAAGATC+CGG | + | chr7.3:6255696-6255715 | MS.gene06991:CDS | 35.0% |
| ! | GCTGGTTCTTAACATTTCTA+GGG | - | chr7.3:6255924-6255943 | None:intergenic | 35.0% |
| ! | TAAGCATTGTTGAGACTGTT+TGG | + | chr7.3:6256082-6256101 | MS.gene06991:intron | 35.0% |
| ! | TAGCTTTTCCCTTATACTCT+TGG | - | chr7.3:6255302-6255321 | None:intergenic | 35.0% |
| ! | TCAAAAGGACCCTTCTTTTT+GGG | + | chr7.3:6255371-6255390 | MS.gene06991:CDS | 35.0% |
| ! | TCAGTTCTCCAAGAGTATAA+GGG | + | chr7.3:6255291-6255310 | MS.gene06991:intron | 35.0% |
| ! | TTCAGTTCTCCAAGAGTATA+AGG | + | chr7.3:6255290-6255309 | MS.gene06991:intron | 35.0% |
| ! | TTTCAAGTCAGTTAGTGGTA+TGG | + | chr7.3:6255191-6255210 | MS.gene06991:intron | 35.0% |
| !! | ATCCTATTCAAAAAGGCATC+CGG | - | chr7.3:6256330-6256349 | None:intergenic | 35.0% |
| !! | TCCGGGATAACTTTTGAAAA+CGG | + | chr7.3:6256161-6256180 | MS.gene06991:intron | 35.0% |
| !! | TGCTGGTTCTTAACATTTCT+AGG | - | chr7.3:6255925-6255944 | None:intergenic | 35.0% |
| !!! | GACTTTTTCAAGTCAGTTAG+TGG | + | chr7.3:6255186-6255205 | MS.gene06991:CDS | 35.0% |
| ACAACGTGTACCTTACACAT+GGG | - | chr7.3:6255417-6255436 | None:intergenic | 40.0% | |
| AGAATCATAGGCAGCATTGT+TGG | - | chr7.3:6256886-6256905 | None:intergenic | 40.0% | |
| ATAATGCCCTGCTTACTTCT+GGG | - | chr7.3:6256731-6256750 | None:intergenic | 40.0% | |
| ATGTGGCATGGTTTAACATC+TGG | + | chr7.3:6256798-6256817 | MS.gene06991:CDS | 40.0% | |
| GGAAAAGCTAGGTTCTTGTA+TGG | + | chr7.3:6255312-6255331 | MS.gene06991:CDS | 40.0% | |
| GGTGTAGATTATGAAGGACA+TGG | + | chr7.3:6255102-6255121 | MS.gene06991:CDS | 40.0% | |
| GTCTTTGCTGATGATACAAC+TGG | - | chr7.3:6256954-6256973 | None:intergenic | 40.0% | |
| GTGTCAATGTCTCATTGTCA+TGG | - | chr7.3:6256932-6256951 | None:intergenic | 40.0% | |
| TACAACGTGTACCTTACACA+TGG | - | chr7.3:6255418-6255437 | None:intergenic | 40.0% | |
| TATAATGCCCTGCTTACTTC+TGG | - | chr7.3:6256732-6256751 | None:intergenic | 40.0% | |
| TGTGCCAAATATGCTGTGTA+TGG | + | chr7.3:6255081-6255100 | MS.gene06991:CDS | 40.0% | |
| TTAAACCATGCCACATTCCA+GGG | - | chr7.3:6256794-6256813 | None:intergenic | 40.0% | |
| TTCTTGTATGGAGAGTCCAT+GGG | + | chr7.3:6255324-6255343 | MS.gene06991:CDS | 40.0% | |
| TTTGTTGGCAAGCCGAAAAA+AGG | - | chr7.3:6256575-6256594 | None:intergenic | 40.0% | |
| ! | AACCGGATGCCTTTTTGAAT+AGG | + | chr7.3:6256325-6256344 | MS.gene06991:intron | 40.0% |
| !! | ATGTTGATGACAACTTGGTG+TGG | - | chr7.3:6255616-6255635 | None:intergenic | 40.0% |
| !! | GCCGTTTTCAAAAGTTATCC+CGG | - | chr7.3:6256165-6256184 | None:intergenic | 40.0% |
| !!! | TCTAGGGCTGTTTTTAACCT+GGG | - | chr7.3:6255908-6255927 | None:intergenic | 40.0% |
| !!! | TTCTAGGGCTGTTTTTAACC+TGG | - | chr7.3:6255909-6255928 | None:intergenic | 40.0% |
| AAACCTCACCCTTTCTCGTT+TGG | - | chr7.3:6255722-6255741 | None:intergenic | 45.0% | |
| GAAGGACATGGACAATCTGA+AGG | + | chr7.3:6255114-6255133 | MS.gene06991:CDS | 45.0% | |
| GCAACCATTGTCAAAGGAAG+TGG | - | chr7.3:6255850-6255869 | None:intergenic | 45.0% | |
| GGTGTCTTCAAGATTCATGC+TGG | - | chr7.3:6255942-6255961 | None:intergenic | 45.0% | |
| GTACTACAGAATGTGGAGTG+CGG | + | chr7.3:6255052-6255071 | MS.gene06991:CDS | 45.0% | |
| GTGGAAGATAGTTCCCACAA+AGG | + | chr7.3:6255666-6255685 | MS.gene06991:CDS | 45.0% | |
| GTGGGAACTATCTTCCACTT+TGG | - | chr7.3:6255664-6255683 | None:intergenic | 45.0% | |
| GTTAAACCATGCCACATTCC+AGG | - | chr7.3:6256795-6256814 | None:intergenic | 45.0% | |
| GTTCTTGTATGGAGAGTCCA+TGG | + | chr7.3:6255323-6255342 | MS.gene06991:CDS | 45.0% | |
| ! | CTTTGGGTGGAATTTTGAGC+AGG | + | chr7.3:6256656-6256675 | MS.gene06991:intron | 45.0% |
| ! | TTTTTAACCTGGGCTTGTCC+TGG | - | chr7.3:6255898-6255917 | None:intergenic | 45.0% |
| !! | AAGGACCCTTCTTTTTGGGA+TGG | + | chr7.3:6255375-6255394 | MS.gene06991:CDS | 45.0% |
| AAGATCCGGCCAAACGAGAA+AGG | + | chr7.3:6255710-6255729 | MS.gene06991:CDS | 50.0% | |
| ACAGCGCCATCCCAAAAAGA+AGG | - | chr7.3:6255384-6255403 | None:intergenic | 50.0% | |
| AGATCCGGCCAAACGAGAAA+GGG | + | chr7.3:6255711-6255730 | MS.gene06991:CDS | 50.0% | |
| CAGCGCCATCCCAAAAAGAA+GGG | - | chr7.3:6255383-6255402 | None:intergenic | 50.0% | |
| GACAGACCCAGAAGTAAGCA+GGG | + | chr7.3:6256722-6256741 | MS.gene06991:CDS | 50.0% | |
| TAGACTAACTGCTCCACCCA+TGG | - | chr7.3:6255343-6255362 | None:intergenic | 50.0% | |
| TCGTTTGGCCGGATCTTTGA+AGG | - | chr7.3:6255707-6255726 | None:intergenic | 50.0% | |
| TGACAGACCCAGAAGTAAGC+AGG | + | chr7.3:6256721-6256740 | MS.gene06991:CDS | 50.0% | |
| TGATATACCAGGACAAGCCC+AGG | + | chr7.3:6255888-6255907 | MS.gene06991:CDS | 50.0% | |
| TTGTACCCTGGAATGTGGCA+TGG | + | chr7.3:6256786-6256805 | MS.gene06991:CDS | 50.0% | |
| TTGTATGGAGAGTCCATGGG+TGG | + | chr7.3:6255327-6255346 | MS.gene06991:CDS | 50.0% | |
| CTCACCCTTTCTCGTTTGGC+CGG | - | chr7.3:6255718-6255737 | None:intergenic | 55.0% | |
| CCTTACACATGGGCGCGACA+AGG | - | chr7.3:6255407-6255426 | None:intergenic | 60.0% | |
| CCTTGTCGCGCCCATGTGTA+AGG | + | chr7.3:6255404-6255423 | MS.gene06991:CDS | 60.0% | |
| CGGCCAAACGAGAAAGGGTG+AGG | + | chr7.3:6255716-6255735 | MS.gene06991:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6255048 | 6257052 | 6255048 | ID=MS.gene06991 |
| chr7.3 | mRNA | 6255048 | 6257052 | 6255048 | ID=MS.gene06991.t1;Parent=MS.gene06991 |
| chr7.3 | exon | 6255048 | 6255207 | 6255048 | ID=MS.gene06991.t1.exon1;Parent=MS.gene06991.t1 |
| chr7.3 | CDS | 6255048 | 6255207 | 6255048 | ID=cds.MS.gene06991.t1;Parent=MS.gene06991.t1 |
| chr7.3 | exon | 6255295 | 6255425 | 6255295 | ID=MS.gene06991.t1.exon2;Parent=MS.gene06991.t1 |
| chr7.3 | CDS | 6255295 | 6255425 | 6255295 | ID=cds.MS.gene06991.t1;Parent=MS.gene06991.t1 |
| chr7.3 | exon | 6255595 | 6255732 | 6255595 | ID=MS.gene06991.t1.exon3;Parent=MS.gene06991.t1 |
| chr7.3 | CDS | 6255595 | 6255732 | 6255595 | ID=cds.MS.gene06991.t1;Parent=MS.gene06991.t1 |
| chr7.3 | exon | 6255872 | 6255970 | 6255872 | ID=MS.gene06991.t1.exon4;Parent=MS.gene06991.t1 |
| chr7.3 | CDS | 6255872 | 6255970 | 6255872 | ID=cds.MS.gene06991.t1;Parent=MS.gene06991.t1 |
| chr7.3 | exon | 6256678 | 6257052 | 6256678 | ID=MS.gene06991.t1.exon5;Parent=MS.gene06991.t1 |
| chr7.3 | CDS | 6256678 | 6257052 | 6256678 | ID=cds.MS.gene06991.t1;Parent=MS.gene06991.t1 |
| Gene Sequence |
| Protein sequence |
