AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069974

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069974.t1 MTR_3g116130 98.929 280 3 0 1 280 1 280 0.0 555
MS.gene069974.t1 MTR_3g116130 98.932 281 3 0 1 281 1 281 0.0 550
MS.gene069974.t1 MTR_8g024520 56.000 200 72 9 23 214 19 210 9.20e-57 184
MS.gene069974.t1 MTR_8g024520 56.000 200 72 9 23 214 19 210 9.74e-57 184
MS.gene069974.t1 MTR_5g064120 85.882 85 12 0 21 105 8 92 5.01e-49 164
MS.gene069974.t1 MTR_4g035310 78.947 95 20 0 19 113 6 100 6.51e-49 163
MS.gene069974.t1 MTR_4g035310 78.947 95 20 0 19 113 6 100 8.96e-49 163
MS.gene069974.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 2.56e-43 146
MS.gene069974.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 6.56e-42 144
MS.gene069974.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 7.11e-42 144
MS.gene069974.t1 MTR_7g117495 67.778 90 29 0 21 110 10 99 1.69e-40 141
MS.gene069974.t1 MTR_7g117495 67.778 90 29 0 21 110 10 99 1.88e-40 141
MS.gene069974.t1 MTR_2g026180 38.261 115 50 3 30 129 5 113 4.82e-20 89.7
MS.gene069974.t1 MTR_4g088010 53.012 83 39 0 25 107 72 154 6.20e-20 88.6
MS.gene069974.t1 MTR_4g088010 30.282 142 82 5 24 150 158 297 2.66e-11 63.5
MS.gene069974.t1 MTR_8g463890 46.988 83 44 0 25 107 69 151 2.39e-18 84.7
MS.gene069974.t1 MTR_7g088140 44.048 84 47 0 24 107 122 205 9.12e-18 83.2
MS.gene069974.t1 MTR_7g088140 44.048 84 47 0 24 107 122 205 1.61e-17 82.4
MS.gene069974.t1 MTR_3g055990 42.667 75 42 1 30 104 7 80 2.28e-17 82.0
MS.gene069974.t1 MTR_3g055990 42.667 75 42 1 30 104 7 80 2.53e-17 82.0
MS.gene069974.t1 MTR_5g088220 40.964 83 49 0 25 107 161 243 8.45e-17 80.5
MS.gene069974.t1 MTR_1g073690 40.000 80 47 1 25 104 2 80 1.86e-16 79.3
MS.gene069974.t1 MTR_1g073690 37.037 81 51 0 24 104 107 187 3.94e-11 63.5
MS.gene069974.t1 MTR_4g070190 44.737 76 41 1 30 104 9 84 7.88e-16 73.6
MS.gene069974.t1 MTR_3g080130 36.190 105 65 2 11 114 18 121 2.94e-15 71.2
MS.gene069974.t1 MTR_5g097580 41.333 75 43 1 30 104 7 80 4.70e-15 75.1
MS.gene069974.t1 MTR_5g097580 30.508 177 94 5 30 178 107 282 2.38e-11 64.3
MS.gene069974.t1 MTR_4g070140 44.737 76 41 1 30 104 9 84 5.58e-15 72.0
MS.gene069974.t1 MTR_5g097580 41.333 75 43 1 30 104 7 80 5.92e-15 74.7
MS.gene069974.t1 MTR_5g097580 30.508 177 94 5 30 178 107 282 3.02e-11 63.9
MS.gene069974.t1 MTR_4g070080 40.964 83 47 2 23 104 1 82 1.84e-14 68.9
MS.gene069974.t1 MTR_4g070080 40.964 83 47 2 23 104 1 82 4.26e-14 68.9
MS.gene069974.t1 MTR_3g084040 42.029 69 40 0 29 97 36 104 4.62e-14 68.6
MS.gene069974.t1 MTR_7g013730 40.244 82 47 2 30 110 41 121 4.64e-14 70.5
MS.gene069974.t1 MTR_3g025880 40.594 101 57 3 11 110 27 125 4.73e-14 72.0
MS.gene069974.t1 MTR_3g084040 42.424 66 38 0 29 94 36 101 5.55e-14 67.0
MS.gene069974.t1 MTR_4g109540 40.964 83 47 2 29 110 42 123 6.80e-14 70.5
MS.gene069974.t1 MTR_4g063560 45.070 71 38 1 29 98 33 103 2.26e-13 65.5
MS.gene069974.t1 MTR_7g105260 38.462 91 53 2 30 117 33 123 9.05e-13 64.7
MS.gene069974.t1 MTR_7g013740 34.426 122 67 3 1 110 1 121 1.69e-12 64.3
MS.gene069974.t1 MTR_3g103420 35.000 80 51 1 25 104 6 84 1.12e-11 64.7
MS.gene069974.t1 MTR_4g109540 37.363 91 47 3 29 110 42 131 1.46e-11 63.9
MS.gene069974.t1 MTR_4g104470 38.393 112 57 4 30 140 123 223 2.09e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069974.t1 AT1G76460 69.203 276 72 6 14 279 9 281 2.28e-128 366
MS.gene069974.t1 AT1G20880 65.357 280 73 8 13 281 8 274 3.64e-113 327
MS.gene069974.t1 AT1G20880 65.357 280 73 8 13 281 8 274 3.64e-113 327
MS.gene069974.t1 AT1G20880 65.357 280 73 8 13 281 8 274 3.64e-113 327
MS.gene069974.t1 AT1G22330 59.873 157 55 4 21 176 9 158 3.54e-51 170
MS.gene069974.t1 AT1G33470 43.089 246 115 5 25 251 3 242 1.83e-50 166
MS.gene069974.t1 AT1G33470 43.320 247 114 6 25 251 3 243 2.06e-49 164
MS.gene069974.t1 AT1G33470 43.802 242 110 6 25 246 3 238 2.33e-49 164
MS.gene069974.t1 AT2G46780 52.356 191 79 6 20 199 13 202 1.81e-47 161
MS.gene069974.t1 AT2G46780 52.356 191 79 6 20 199 13 202 1.81e-47 161
MS.gene069974.t1 AT1G78260 81.176 85 16 0 21 105 9 93 2.62e-46 157
MS.gene069974.t1 AT1G22910 78.022 91 20 0 23 113 7 97 2.74e-46 155
MS.gene069974.t1 AT1G78260 81.176 85 16 0 21 105 9 93 3.96e-46 156
MS.gene069974.t1 AT1G22910 78.022 91 20 0 23 113 7 97 7.38e-46 155
MS.gene069974.t1 AT1G22910 78.022 91 20 0 23 113 7 97 1.49e-45 157
MS.gene069974.t1 AT3G54770 65.625 96 32 1 19 113 7 102 3.69e-38 135
MS.gene069974.t1 AT3G54770 65.625 96 32 1 19 113 7 102 4.59e-38 135
MS.gene069974.t1 AT5G11412 66.250 80 27 0 25 104 48 127 1.41e-34 123
MS.gene069974.t1 AT5G53680 55.000 80 36 0 25 104 9 88 2.00e-28 107
MS.gene069974.t1 AT3G06970 49.057 106 49 2 25 125 8 113 2.20e-26 105
MS.gene069974.t1 AT3G54770 55.556 90 25 2 45 128 1 81 6.67e-25 99.4
MS.gene069974.t1 AT5G53720 55.263 76 34 0 29 104 9 84 3.57e-24 94.0
MS.gene069974.t1 AT2G22090 46.988 83 44 0 25 107 100 182 6.73e-19 85.5
MS.gene069974.t1 AT2G22090 46.988 83 44 0 25 107 100 182 7.41e-19 85.5
MS.gene069974.t1 AT4G39260 46.053 76 40 1 30 104 7 82 1.74e-18 79.0
MS.gene069974.t1 AT4G39260 46.053 76 40 1 30 104 7 82 1.86e-18 79.7
MS.gene069974.t1 AT4G39260 46.053 76 40 1 30 104 7 82 5.27e-18 79.7
MS.gene069974.t1 AT3G15010 48.193 83 43 0 25 107 71 153 5.52e-18 83.6
MS.gene069974.t1 AT3G15010 33.333 102 68 0 12 113 150 251 1.74e-14 73.2
MS.gene069974.t1 AT3G15010 48.193 83 43 0 25 107 71 153 5.52e-18 83.6
MS.gene069974.t1 AT3G15010 33.333 102 68 0 12 113 150 251 1.74e-14 73.2
MS.gene069974.t1 AT4G26650 42.667 75 42 1 30 104 16 89 9.79e-18 83.2
MS.gene069974.t1 AT4G26650 42.667 75 42 1 30 104 13 86 1.03e-17 82.8
MS.gene069974.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.86e-17 82.0
MS.gene069974.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.86e-17 82.0
MS.gene069974.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.86e-17 82.0
MS.gene069974.t1 AT5G47620 46.377 69 36 1 29 97 6 73 2.10e-17 82.0
MS.gene069974.t1 AT4G39260 52.632 57 27 0 30 86 7 63 2.10e-17 76.3
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene069974.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene069974.t1 AT2G19380 39.048 105 62 1 1 105 382 484 2.03e-16 79.3
MS.gene069974.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.05e-16 79.3
MS.gene069974.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.05e-16 79.3
MS.gene069974.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.05e-16 79.3
MS.gene069974.t1 AT3G23830 39.326 89 52 2 29 116 35 122 2.63e-16 74.3
MS.gene069974.t1 AT3G23830 39.326 89 52 2 29 116 35 122 2.63e-16 74.3
MS.gene069974.t1 AT4G13850 45.833 72 35 1 29 100 35 102 2.80e-16 73.9
MS.gene069974.t1 AT2G22100 30.244 205 130 6 1 195 137 338 3.09e-16 78.2
MS.gene069974.t1 AT3G07810 41.333 75 43 1 30 104 7 80 3.87e-16 78.6
MS.gene069974.t1 AT3G07810 41.333 75 43 1 30 104 7 80 4.14e-16 78.6
MS.gene069974.t1 AT4G13850 45.833 72 35 1 29 100 35 102 4.28e-16 73.9
MS.gene069974.t1 AT4G13850 45.833 72 35 1 29 100 35 102 5.27e-16 73.9
MS.gene069974.t1 AT4G13850 45.833 72 35 1 29 100 35 102 5.90e-16 73.9
MS.gene069974.t1 AT2G21660 42.683 82 45 2 24 104 4 84 2.46e-15 72.4
MS.gene069974.t1 AT2G21660 42.683 82 45 2 24 104 4 84 3.52e-15 72.4
MS.gene069974.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.58e-15 75.1
MS.gene069974.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.58e-15 75.1
MS.gene069974.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.58e-15 75.1
MS.gene069974.t1 AT2G33410 33.913 115 63 2 30 132 7 120 1.26e-14 73.6
MS.gene069974.t1 AT4G14300 38.750 80 48 1 25 104 2 80 2.95e-14 72.8
MS.gene069974.t1 AT4G14300 38.750 80 48 1 25 104 2 80 2.95e-14 72.8
MS.gene069974.t1 AT5G61030 38.750 80 39 2 29 108 40 109 1.46e-12 67.0
MS.gene069974.t1 AT5G61030 38.750 80 39 2 29 108 40 109 1.46e-12 67.0
MS.gene069974.t1 AT3G26420 43.478 69 38 1 30 97 8 76 4.45e-12 65.1
MS.gene069974.t1 AT1G74230 37.179 78 49 0 29 106 34 111 4.46e-12 65.5
MS.gene069974.t1 AT1G18630 42.857 70 39 1 29 97 36 105 1.65e-11 61.6
MS.gene069974.t1 AT5G59865 48.980 49 25 0 29 77 26 74 3.16e-11 59.7
MS.gene069974.t1 AT1G22910 71.795 39 11 0 75 113 8 46 4.67e-11 61.2
MS.gene069974.t1 AT3G13224 32.877 73 48 1 30 102 20 91 5.52e-11 62.8
MS.gene069974.t1 AT5G04280 44.444 54 30 0 29 82 7 60 6.87e-11 62.0

Find 109 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGTTACTTTGAACAATT+TGG 0.153087 3.2:-91782590 MS.gene069974:CDS
AATACAACTATTTATCCTTA+TGG 0.237313 3.2:-91781033 MS.gene069974:CDS
GGAATGGTTTATCCTCCTTA+TGG 0.259852 3.2:-91781776 MS.gene069974:CDS
AGGACTGTACCGCTAGGATA+TGG 0.287341 3.2:+91780871 None:intergenic
CAATTGTTGAATTCTCCTTT+TGG 0.309482 3.2:-91782677 MS.gene069974:CDS
TATTTATCCTTATGGACAAT+TGG 0.319044 3.2:-91781025 MS.gene069974:CDS
ACCTGTGGGTATACGTATTC+AGG 0.345135 3.2:+91781212 None:intergenic
GGTGCCTACGTTGGAGGTTA+TGG 0.353929 3.2:-91781833 MS.gene069974:CDS
GTCCTGTTATTGATGGTAGA+AGG 0.354869 3.2:-91782120 MS.gene069974:CDS
CAACAGTACCTTCAGATATA+TGG 0.362755 3.2:-91781072 MS.gene069974:CDS
GAATGGTTTATCCTCCTTAT+GGG 0.365347 3.2:-91781775 MS.gene069974:intron
GGAATTGCTGCACCAGTTCC+AGG 0.368536 3.2:-91779794 MS.gene069974:CDS
CAGGATCAAGTTCGAGTTCT+GGG 0.370870 3.2:-91782703 MS.gene069974:CDS
GCATACCAGGGTCCAAGTTC+AGG 0.377967 3.2:-91782722 MS.gene069974:CDS
TCAGGATCAAGTTCGAGTTC+TGG 0.380866 3.2:-91782704 MS.gene069974:CDS
TACTGTTGTTGACCAGCATA+AGG 0.402296 3.2:+91781087 None:intergenic
CTCGAACTTGATCCTGAACT+TGG 0.405699 3.2:+91782710 None:intergenic
ACTTTCCTATGGCTATCAAC+AGG 0.406701 3.2:-91781798 MS.gene069974:CDS
GCCCTTCTACCATCAATAAC+AGG 0.411876 3.2:+91782118 None:intergenic
CAATTGGGTCAAGCTGTTCC+TGG 0.414666 3.2:-91781009 MS.gene069974:CDS
ATTTATCCTTATGGACAATT+GGG 0.419932 3.2:-91781024 MS.gene069974:CDS
GCTCACAAAACCGTAGCCTT+TGG 0.426083 3.2:+91782520 None:intergenic
ATAGCATACCATATGAGATT+GGG 0.427085 3.2:+91782056 None:intergenic
CAGGCTCTCCTAGCAGCCTC+TGG 0.436509 3.2:+91782154 None:intergenic
TAAAGTCTTCGTTGGTGGAT+TGG 0.444418 3.2:-91782639 MS.gene069974:CDS
AATAGCATACCATATGAGAT+TGG 0.458747 3.2:+91782055 None:intergenic
ACCGTAGCCTTTGGATCGTC+CGG 0.458930 3.2:+91782529 None:intergenic
CTACCATCAATAACAGGACT+TGG 0.459160 3.2:+91782124 None:intergenic
CCTCAACCATCTGTTTGGTC+AGG 0.464509 3.2:+91779725 None:intergenic
CGTCCCCTCAACCATCTGTT+TGG 0.471470 3.2:+91779720 None:intergenic
GCCCGTGGTGCCTACGTTGG+AGG 0.473342 3.2:-91781839 MS.gene069974:CDS
ACAATAAATTGTGGTTGGCC+TGG 0.475736 3.2:+91779776 None:intergenic
TCATGGTTATACAGCAATGC+AGG 0.476637 3.2:-91780983 MS.gene069974:CDS
GCTTGACCCAATTGTCCATA+AGG 0.479896 3.2:+91781018 None:intergenic
CATCAGATTGTGCCCTATGG+TGG 0.479906 3.2:-91780943 MS.gene069974:CDS
CTATGGCTATCAACAGGGAA+TGG 0.482459 3.2:-91781792 MS.gene069974:CDS
CAAGCTGTTCCTGGCGGTCA+TGG 0.484640 3.2:-91781000 MS.gene069974:CDS
GATCCAAGTCCTGTTATTGA+TGG 0.488968 3.2:-91782127 MS.gene069974:CDS
ACCTCCAACGTAGGCACCAC+GGG 0.492680 3.2:+91781838 None:intergenic
TATACTAAAGTCTTCGTTGG+TGG 0.503912 3.2:-91782644 MS.gene069974:CDS
GGACTGTACCGCTAGGATAT+GGG 0.505345 3.2:+91780872 None:intergenic
ACTTATACTAAAGTCTTCGT+TGG 0.505982 3.2:-91782647 MS.gene069974:CDS
TAGAAGGGCTAATTGTAACT+TGG 0.507997 3.2:-91782104 MS.gene069974:CDS
AATTGTGGTTGGCCTGGAAC+TGG 0.508286 3.2:+91779782 None:intergenic
CAGCATCCCACTCACCCATA+AGG 0.512059 3.2:+91781761 None:intergenic
TACCAACAACCACTTTCCTA+TGG 0.512893 3.2:-91781809 MS.gene069974:CDS
ACTGTTGTTGACCAGCATAA+GGG 0.516296 3.2:+91781088 None:intergenic
CTTCAGATATATGGTGTGCC+TGG 0.520918 3.2:-91781063 MS.gene069974:CDS
GGTTGCAAACTTCCAACATA+AGG 0.521111 3.2:+91781863 None:intergenic
ATTAACATTGGACCCACCAT+AGG 0.522838 3.2:+91780930 None:intergenic
AATTGTAACTTGGCTTCGCA+TGG 0.524644 3.2:-91782094 MS.gene069974:CDS
CCAACGTAGGCACCACGGGC+TGG 0.528290 3.2:+91781842 None:intergenic
AGTTGTTATTGCATTAACAT+TGG 0.528485 3.2:+91780918 None:intergenic
GGTCATCAGATTGTGCCCTA+TGG 0.532673 3.2:-91780946 MS.gene069974:CDS
TCTTCGTTGGTGGATTGGCA+TGG 0.533106 3.2:-91782634 MS.gene069974:CDS
CTCCAAATTGTTCAAAGTAA+CGG 0.539239 3.2:+91782588 None:intergenic
CTTCGTTGGTGGATTGGCAT+GGG 0.539784 3.2:-91782633 MS.gene069974:CDS
GCTGTATAACCATGACCGCC+AGG 0.540975 3.2:+91780991 None:intergenic
TCCTAGCAGCCTCTGGATCA+CGG 0.541344 3.2:+91782161 None:intergenic
ATCAGATTGTGCCCTATGGT+GGG 0.545371 3.2:-91780942 MS.gene069974:CDS
AGACCACCATCTCCTTATGT+TGG 0.552953 3.2:-91781875 MS.gene069974:CDS
TCCTGTTATTGATGGTAGAA+GGG 0.553892 3.2:-91782119 MS.gene069974:CDS
GGTATGTACAACCCTTATGC+TGG 0.554007 3.2:-91781099 MS.gene069974:CDS
TGGGACTTGAATGGCAGGCA+CGG 0.554141 3.2:+91780891 None:intergenic
GGGACTTGAATGGCAGGCAC+GGG 0.554491 3.2:+91780892 None:intergenic
CCAGCCCGTGGTGCCTACGT+TGG 0.554812 3.2:-91781842 MS.gene069974:CDS
AGTGTGATTAATGGCATACC+AGG 0.559750 3.2:-91782735 None:intergenic
TTGATCCTGAACTTGGACCC+TGG 0.560791 3.2:+91782717 None:intergenic
AGCCATAGGAAAGTGGTTGT+TGG 0.564090 3.2:+91781807 None:intergenic
GGATATGGGACTTGAATGGC+AGG 0.565965 3.2:+91780886 None:intergenic
CTGACCAAACAGATGGTTGA+GGG 0.567593 3.2:-91779724 None:intergenic
CCTCAGTTTATGCAAGGTAG+CGG 0.569657 3.2:-91779749 MS.gene069974:CDS
GAGAAACAATAAATTGTGGT+TGG 0.575026 3.2:+91779771 None:intergenic
GTATAAGTAGTATCTCCAAA+AGG 0.576903 3.2:+91782662 None:intergenic
ATGCAGGGTTATACAGTACC+AGG 0.577248 3.2:-91780967 MS.gene069974:CDS
CATTCCCTGTTGATAGCCAT+AGG 0.583457 3.2:+91781793 None:intergenic
TAGCATACCATATGAGATTG+GGG 0.583743 3.2:+91782057 None:intergenic
GTTTCTCCTCAGTTTATGCA+AGG 0.585322 3.2:-91779755 MS.gene069974:CDS
TCCGTGATCCAGAGGCTGCT+AGG 0.585544 3.2:-91782162 MS.gene069974:CDS
GCTAGGATATGGGACTTGAA+TGG 0.586705 3.2:+91780882 None:intergenic
AACAGGACTTGGATCAGCAC+AGG 0.593305 3.2:+91782135 None:intergenic
TGTTGATAGCCATAGGAAAG+TGG 0.600019 3.2:+91781800 None:intergenic
AAGAACACCGGACGATCCAA+AGG 0.601945 3.2:-91782536 MS.gene069974:CDS
CCTGACCAAACAGATGGTTG+AGG 0.601994 3.2:-91779725 None:intergenic
CTTTCCTATGGCTATCAACA+GGG 0.608429 3.2:-91781797 MS.gene069974:CDS
TAGGGCACAATCTGATGACC+TGG 0.609886 3.2:+91780949 None:intergenic
ACCGGACGATCCAAAGGCTA+CGG 0.610204 3.2:-91782530 MS.gene069974:CDS
CTTCCAACATAAGGAGATGG+TGG 0.615698 3.2:+91781872 None:intergenic
TGAGGAGAAACAATAAATTG+TGG 0.616646 3.2:+91779767 None:intergenic
TTAACATTGGACCCACCATA+GGG 0.618343 3.2:+91780931 None:intergenic
AACCTCCAACGTAGGCACCA+CGG 0.618711 3.2:+91781837 None:intergenic
AAACTTCCAACATAAGGAGA+TGG 0.628730 3.2:+91781869 None:intergenic
GGAAGTTTGCAACCAGCCCG+TGG 0.632845 3.2:-91781854 MS.gene069974:CDS
CAGGCACACCATATATCTGA+AGG 0.636375 3.2:+91781064 None:intergenic
GGTGACTTTCCGTGATCCAG+AGG 0.637483 3.2:-91782170 MS.gene069974:CDS
AGCGGTCCTGACCAAACAGA+TGG 0.639591 3.2:-91779731 MS.gene069974:CDS
GCTTCGCATGGTCGTCCACG+TGG 0.643033 3.2:-91782082 MS.gene069974:CDS
ATAGTTGTATTCATCGCACC+AGG 0.645261 3.2:+91781045 None:intergenic
CATGGTTATACAGCAATGCA+GGG 0.646571 3.2:-91780982 MS.gene069974:CDS
CATCCCACTCACCCATAAGG+AGG 0.654523 3.2:+91781764 None:intergenic
ACCTGAATACGTATACCCAC+AGG 0.654631 3.2:-91781213 MS.gene069974:intron
GTAGCCATAACCTCCAACGT+AGG 0.685657 3.2:+91781829 None:intergenic
GTCATCACTGATAAGAACAC+CGG 0.699829 3.2:-91782548 MS.gene069974:CDS
CCGCTACCTTGCATAAACTG+AGG 0.704628 3.2:+91779749 None:intergenic
TTGGGTCAAGCTGTTCCTGG+CGG 0.707255 3.2:-91781006 MS.gene069974:CDS
GTGTGATTAATGGCATACCA+GGG 0.710100 3.2:-91782734 None:intergenic
AGCATACCATATGAGATTGG+GGG 0.719081 3.2:+91782058 None:intergenic
GTTCTTATCAGTGATGACGA+CGG 0.732189 3.2:+91782553 None:intergenic
ATTCAAGTCCCATATCCTAG+CGG 0.771653 3.2:-91780880 MS.gene069974:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAATTAAAAAATAT+AGG - chr3.2:91782457-91782476 MS.gene069974:intron 0.0%
!! AAAAATAAAATATAAATTCC+CGG + chr3.2:91782143-91782162 None:intergenic 10.0%
!! AAATTTATGTACAAAATTAA+GGG - chr3.2:91782407-91782426 MS.gene069974:intron 10.0%
!! TAAATTTATGTACAAAATTA+AGG - chr3.2:91782406-91782425 MS.gene069974:intron 10.0%
!! TGATAAATTATTTAATGTAA+CGG + chr3.2:91781763-91781782 None:intergenic 10.0%
!!! TAATTTTGTACATAAATTTA+GGG + chr3.2:91782406-91782425 None:intergenic 10.0%
!!! TCAGTTTTTTTTTTTTTATT+TGG - chr3.2:91781267-91781286 MS.gene069974:intron 10.0%
!!! TCTAGTAAATTTTTTTTTTT+TGG + chr3.2:91782020-91782039 None:intergenic 10.0%
!!! TTAATTTTGTACATAAATTT+AGG + chr3.2:91782407-91782426 None:intergenic 10.0%
!! AAAAAAAATTTACTAGAACA+TGG - chr3.2:91782023-91782042 MS.gene069974:intron 15.0%
!! AAAAAAATTTACTAGAACAT+GGG - chr3.2:91782024-91782043 MS.gene069974:intron 15.0%
!! AAAATAAAATATAAATTCCC+GGG + chr3.2:91782142-91782161 None:intergenic 15.0%
!! AATGTTAATTCCAATATATA+TGG + chr3.2:91782241-91782260 None:intergenic 15.0%
!! ATATAAACAAAGAAAGAAAT+AGG + chr3.2:91780009-91780028 None:intergenic 15.0%
!! ATGTTAATTCCAATATATAT+GGG + chr3.2:91782240-91782259 None:intergenic 15.0%
!! TATAAACAAAGAAAGAAATA+GGG + chr3.2:91780008-91780027 None:intergenic 15.0%
!! TGTTTATATTCTATCATATA+AGG - chr3.2:91780020-91780039 MS.gene069974:intron 15.0%
!!! ATAATGATAATTTTATTCCT+AGG - chr3.2:91781671-91781690 MS.gene069974:intron 15.0%
!!! TAAATTTTTTTTTTTTGGTC+AGG + chr3.2:91782015-91782034 None:intergenic 15.0%
!!! TTTTTTTTTTTATTTGGCTT+AGG - chr3.2:91781273-91781292 MS.gene069974:intron 15.0%
!! AATACAACTATTTATCCTTA+TGG - chr3.2:91781419-91781438 MS.gene069974:intron 20.0%
!! TAAATAATTTATCAGAACGT+GGG - chr3.2:91781769-91781788 MS.gene069974:intron 20.0%
!! TATTATTATTAGCAGATTGA+CGG + chr3.2:91780758-91780777 None:intergenic 20.0%
!! TTAAATAATTTATCAGAACG+TGG - chr3.2:91781768-91781787 MS.gene069974:intron 20.0%
!! TTATTTACTATAGAATGACT+TGG - chr3.2:91780225-91780244 MS.gene069974:intron 20.0%
!!! AATTATCATTATTGTTTTCC+TGG + chr3.2:91781663-91781682 None:intergenic 20.0%
!!! ATTATCATTATTGTTTTCCT+GGG + chr3.2:91781662-91781681 None:intergenic 20.0%
!!! GATCTTTTCAACATTATATT+TGG - chr3.2:91781184-91781203 MS.gene069974:intron 20.0%
!!! GATTTCTTCTTATCTTTTAT+AGG - chr3.2:91780547-91780566 MS.gene069974:intron 20.0%
!!! GTTTTGTAATATATGATAGA+AGG - chr3.2:91782429-91782448 MS.gene069974:intron 20.0%
! AAACAAAAGCCCATATATAT+TGG - chr3.2:91782228-91782247 MS.gene069974:intron 25.0%
! AAATAATTTATCAGAACGTG+GGG - chr3.2:91781770-91781789 MS.gene069974:intron 25.0%
! AAGCAATGTATATTCTATGT+AGG + chr3.2:91780518-91780537 None:intergenic 25.0%
! ACATGGAGACTAATATTAAA+TGG + chr3.2:91781093-91781112 None:intergenic 25.0%
! ACTTTAAATTCTGTGCAAAT+AGG - chr3.2:91782609-91782628 MS.gene069974:CDS 25.0%
! ATTTATCCTTATGGACAATT+GGG - chr3.2:91781428-91781447 MS.gene069974:intron 25.0%
! GTAATATATGATAGAAGGTT+GGG - chr3.2:91782434-91782453 MS.gene069974:intron 25.0%
! TACTTGATTAGTAGTTAGTT+AGG - chr3.2:91780927-91780946 MS.gene069974:CDS 25.0%
! TATTTATCCTTATGGACAAT+TGG - chr3.2:91781427-91781446 MS.gene069974:intron 25.0%
! TGTAATATATGATAGAAGGT+TGG - chr3.2:91782433-91782452 MS.gene069974:intron 25.0%
! TTATTACATCCAATTGACAT+AGG + chr3.2:91781062-91781081 None:intergenic 25.0%
!! AGTTGTTATTGCATTAACAT+TGG + chr3.2:91781537-91781556 None:intergenic 25.0%
!! ATTTAATATTAGTCTCCATG+TGG - chr3.2:91781092-91781111 MS.gene069974:CDS 25.0%
!! CATTTCTTTGAAAAAATCCT+AGG + chr3.2:91781691-91781710 None:intergenic 25.0%
!! TCATTTTCTCGAATTACAAT+CGG + chr3.2:91780089-91780108 None:intergenic 25.0%
!! TCTTCTTATCTTTTATAGGA+CGG - chr3.2:91780551-91780570 MS.gene069974:intron 25.0%
!! TTTAATATTAGTCTCCATGT+GGG - chr3.2:91781093-91781112 MS.gene069974:CDS 25.0%
!!! AATTCTTAACAAGCATTGAT+TGG - chr3.2:91782291-91782310 MS.gene069974:intron 25.0%
!!! CTAGTCATTTTTATTCACAT+GGG + chr3.2:91781870-91781889 None:intergenic 25.0%
!!! GTTTTATCTTTTCAGGTATA+CGG - chr3.2:91781209-91781228 MS.gene069974:intron 25.0%
!!! TCTAGTCATTTTTATTCACA+TGG + chr3.2:91781871-91781890 None:intergenic 25.0%
!!! TTCGTAAGTATTTGATTTTC+AGG - chr3.2:91782637-91782656 MS.gene069974:CDS 25.0%
!!! TTTGGTTGTTTTATCTTTTC+AGG - chr3.2:91781202-91781221 MS.gene069974:intron 25.0%
AAAAAAACTGATATGACCTG+TGG + chr3.2:91781258-91781277 None:intergenic 30.0%
AAAAAACTGATATGACCTGT+GGG + chr3.2:91781257-91781276 None:intergenic 30.0%
AATAGCATACCATATGAGAT+TGG + chr3.2:91780400-91780419 None:intergenic 30.0%
AATTCGAGAAAATGATGACA+TGG - chr3.2:91780094-91780113 MS.gene069974:intron 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr3.2:91781972-91781991 None:intergenic 30.0%
ACTTATACTAAAGTCTTCGT+TGG - chr3.2:91779805-91779824 MS.gene069974:intron 30.0%
AGTCAAAAAAACACGATAAC+TGG + chr3.2:91780855-91780874 None:intergenic 30.0%
ATAGCATACCATATGAGATT+GGG + chr3.2:91780399-91780418 None:intergenic 30.0%
ATATGCTAGTATGATCAACA+CGG + chr3.2:91780193-91780212 None:intergenic 30.0%
ATGAATGATACGACATATGT+AGG - chr3.2:91782363-91782382 MS.gene069974:intron 30.0%
ATGGCTGTTCATAAACAAAA+AGG + chr3.2:91782187-91782206 None:intergenic 30.0%
CAATGCATTATTATATGCAG+CGG - chr3.2:91781924-91781943 MS.gene069974:intron 30.0%
CTATCTTATATGCATGGAAT+TGG - chr3.2:91780251-91780270 MS.gene069974:intron 30.0%
CTCCAAATTGTTCAAAGTAA+CGG + chr3.2:91779867-91779886 None:intergenic 30.0%
CTTAAGGTCTATCAATGTAA+TGG + chr3.2:91781716-91781735 None:intergenic 30.0%
CTTGCAAGAATATGTTGTAT+AGG + chr3.2:91780907-91780926 None:intergenic 30.0%
GAAAATTCTATTACCAGGAA+TGG + chr3.2:91781837-91781856 None:intergenic 30.0%
GAGAAACAATAAATTGTGGT+TGG + chr3.2:91782684-91782703 None:intergenic 30.0%
GGAACAAAAATAATATGCCT+AGG + chr3.2:91782078-91782097 None:intergenic 30.0%
GTATAAGTAGTATCTCCAAA+AGG + chr3.2:91779793-91779812 None:intergenic 30.0%
GTCAAAAAAACACGATAACT+GGG + chr3.2:91780854-91780873 None:intergenic 30.0%
TATGGAAAACCTATGTCAAT+TGG - chr3.2:91781050-91781069 MS.gene069974:CDS 30.0%
TGAGGAGAAACAATAAATTG+TGG + chr3.2:91782688-91782707 None:intergenic 30.0%
TGGCTGTTCATAAACAAAAA+GGG + chr3.2:91782186-91782205 None:intergenic 30.0%
TGGTTTCTATCTTATATGCA+TGG - chr3.2:91780245-91780264 MS.gene069974:intron 30.0%
TGTAACTGCTAAAATAAGCA+TGG + chr3.2:91780817-91780836 None:intergenic 30.0%
! ATTTTTATTCACATGGGAGA+GGG + chr3.2:91781864-91781883 None:intergenic 30.0%
! CAATGCTTGTTAAGAATTGA+AGG + chr3.2:91782289-91782308 None:intergenic 30.0%
! CAATTGTTGAATTCTCCTTT+TGG - chr3.2:91779775-91779794 MS.gene069974:CDS 30.0%
! CTTCTTATCTTTTATAGGAC+GGG - chr3.2:91780552-91780571 MS.gene069974:intron 30.0%
! TAATTGAAGTTCTGATCAAC+AGG - chr3.2:91782480-91782499 MS.gene069974:intron 30.0%
!!! AGTTATCGTGTTTTTTTGAC+TGG - chr3.2:91780854-91780873 MS.gene069974:intron 30.0%
!!! TTCCTTTTTTGTGAGTAATG+AGG + chr3.2:91781739-91781758 None:intergenic 30.0%
AAACTTCCAACATAAGGAGA+TGG + chr3.2:91780586-91780605 None:intergenic 35.0%
AAAGAACCATAACACAGGAA+AGG + chr3.2:91780790-91780809 None:intergenic 35.0%
AAGAATTTCCACTTGTGACT+CGG - chr3.2:91781614-91781633 MS.gene069974:intron 35.0%
AGCCTCATTACTCACAAAAA+AGG - chr3.2:91781734-91781753 MS.gene069974:intron 35.0%
ATATAAATTCCCGGGAATAG+AGG + chr3.2:91782134-91782153 None:intergenic 35.0%
CAAAGAATATCCACCAAAGA+TGG + chr3.2:91782206-91782225 None:intergenic 35.0%
CAACAGTACCTTCAGATATA+TGG - chr3.2:91781380-91781399 MS.gene069974:intron 35.0%
CACAAGTGGAAATTCTTTCT+TGG + chr3.2:91781611-91781630 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr3.2:91781973-91781992 None:intergenic 35.0%
CCTAGGAATAAATAATACCG+AGG + chr3.2:91782061-91782080 None:intergenic 35.0%
CCTCGGTATTATTTATTCCT+AGG - chr3.2:91782058-91782077 MS.gene069974:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr3.2:91781971-91781990 None:intergenic 35.0%
CTTATATGCATGGAATTGGA+GGG - chr3.2:91780255-91780274 MS.gene069974:intron 35.0%
GAAAAAGGAATTCCTGTGTT+TGG + chr3.2:91782107-91782126 None:intergenic 35.0%
GAATGGTTTATCCTCCTTAT+GGG - chr3.2:91780677-91780696 MS.gene069974:intron 35.0%
GGAAAGTTATTCCAAAGGAA+TGG + chr3.2:91781641-91781660 None:intergenic 35.0%
GGAATCACATATCTTTGTGT+CGG - chr3.2:91780115-91780134 MS.gene069974:intron 35.0%
TAGAAGGGCTAATTGTAACT+TGG - chr3.2:91780348-91780367 MS.gene069974:intron 35.0%
TAGCATACCATATGAGATTG+GGG + chr3.2:91780398-91780417 None:intergenic 35.0%
TATACTAAAGTCTTCGTTGG+TGG - chr3.2:91779808-91779827 MS.gene069974:intron 35.0%
TCTTATATGCATGGAATTGG+AGG - chr3.2:91780254-91780273 MS.gene069974:intron 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr3.2:91781984-91782003 None:intergenic 35.0%
TGTTTATGAACAGCCATCTT+TGG - chr3.2:91782190-91782209 MS.gene069974:intron 35.0%
TTGCACACTATTGCAAAAAC+TGG - chr3.2:91780714-91780733 MS.gene069974:intron 35.0%
TTTGTGAGTAATGAGGCTTA+AGG + chr3.2:91781732-91781751 None:intergenic 35.0%
! AGTAGCTAGTCTGTAAAGAA+TGG - chr3.2:91782505-91782524 MS.gene069974:intron 35.0%
! CATAGGTTTTCCATATACAG+TGG + chr3.2:91781045-91781064 None:intergenic 35.0%
! CATTTTTATTCACATGGGAG+AGG + chr3.2:91781865-91781884 None:intergenic 35.0%
! GTGTTGATCATACTAGCATA+TGG - chr3.2:91780192-91780211 MS.gene069974:intron 35.0%
! TCCTGTTATTGATGGTAGAA+GGG - chr3.2:91780333-91780352 MS.gene069974:intron 35.0%
! TCGTGTGTTCAACAATGTTT+TGG + chr3.2:91780064-91780083 None:intergenic 35.0%
! TTTTTATTCACATGGGAGAG+GGG + chr3.2:91781863-91781882 None:intergenic 35.0%
!! TCTATGTAGGAAGAGTATTC+TGG + chr3.2:91780505-91780524 None:intergenic 35.0%
AACTTCTACCGTGTCCAATA+GGG - chr3.2:91781332-91781351 MS.gene069974:intron 40.0%
AAGGAATTCCTGTGTTTGGT+AGG + chr3.2:91782103-91782122 None:intergenic 40.0%
AAGGGTTGTACATACCCTAT+TGG + chr3.2:91781349-91781368 None:intergenic 40.0%
AATCACTGGTCCACTGTATA+TGG - chr3.2:91781032-91781051 MS.gene069974:CDS 40.0%
AATTCCTGTGTTTGGTAGGA+AGG + chr3.2:91782099-91782118 None:intergenic 40.0%
AATTGTAACTTGGCTTCGCA+TGG - chr3.2:91780358-91780377 MS.gene069974:intron 40.0%
ACCAGTGATTACCAAATCTC+GGG + chr3.2:91780963-91780982 None:intergenic 40.0%
ACTGGTATATGTCAGTGATG+AGG - chr3.2:91780872-91780891 MS.gene069974:intron 40.0%
ACTGTTGTTGACCAGCATAA+GGG + chr3.2:91781367-91781386 None:intergenic 40.0%
ACTTTCCTATGGCTATCAAC+AGG - chr3.2:91780654-91780673 MS.gene069974:intron 40.0%
AGAATTTCCACTTGTGACTC+GGG - chr3.2:91781615-91781634 MS.gene069974:intron 40.0%
AGCATACCATATGAGATTGG+GGG + chr3.2:91780397-91780416 None:intergenic 40.0%
ATAGTTGTATTCATCGCACC+AGG + chr3.2:91781410-91781429 None:intergenic 40.0%
ATTAACATTGGACCCACCAT+AGG + chr3.2:91781525-91781544 None:intergenic 40.0%
ATTCAAGTCCCATATCCTAG+CGG - chr3.2:91781572-91781591 MS.gene069974:intron 40.0%
CACATACACTTATCAGCTGT+TGG - chr3.2:91782320-91782339 MS.gene069974:intron 40.0%
CATGGTTATACAGCAATGCA+GGG - chr3.2:91781470-91781489 MS.gene069974:intron 40.0%
CCCCACTTATTCACCTTATA+AGG - chr3.2:91781968-91781987 MS.gene069974:intron 40.0%
CTACCATCAATAACAGGACT+TGG + chr3.2:91780331-91780350 None:intergenic 40.0%
CTTTCCTATGGCTATCAACA+GGG - chr3.2:91780655-91780674 MS.gene069974:intron 40.0%
GACACAAAGAACCATAACAC+AGG + chr3.2:91780795-91780814 None:intergenic 40.0%
GACCAGTGATTACCAAATCT+CGG + chr3.2:91780964-91780983 None:intergenic 40.0%
GAGATGAAAATCCCGAGATT+TGG - chr3.2:91780949-91780968 MS.gene069974:CDS 40.0%
GATCCAAGTCCTGTTATTGA+TGG - chr3.2:91780325-91780344 MS.gene069974:intron 40.0%
GCTGATAAGTGTATGTGATC+TGG + chr3.2:91782317-91782336 None:intergenic 40.0%
GGAAATTCTTTCTTGGACAG+AGG + chr3.2:91781604-91781623 None:intergenic 40.0%
GGAATGGTTTATCCTCCTTA+TGG - chr3.2:91780676-91780695 MS.gene069974:intron 40.0%
GGTGGGAAAATTCTATTACC+AGG + chr3.2:91781842-91781861 None:intergenic 40.0%
GGTTGCAAACTTCCAACATA+AGG + chr3.2:91780592-91780611 None:intergenic 40.0%
GTCATCACTGATAAGAACAC+CGG - chr3.2:91779904-91779923 MS.gene069974:intron 40.0%
GTTTCTCCTCAGTTTATGCA+AGG - chr3.2:91782697-91782716 MS.gene069974:CDS 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr3.2:91781986-91782005 MS.gene069974:intron 40.0%
TACCAACAACCACTTTCCTA+TGG - chr3.2:91780643-91780662 MS.gene069974:intron 40.0%
TACTGTTGTTGACCAGCATA+AGG + chr3.2:91781368-91781387 None:intergenic 40.0%
TCATGGTTATACAGCAATGC+AGG - chr3.2:91781469-91781488 MS.gene069974:intron 40.0%
TCCTGGGAAAGTTATTCCAA+AGG + chr3.2:91781646-91781665 None:intergenic 40.0%
TGTACATACCCTATTGGACA+CGG + chr3.2:91781343-91781362 None:intergenic 40.0%
TTAACATTGGACCCACCATA+GGG + chr3.2:91781524-91781543 None:intergenic 40.0%
TTAGATGCACAATGCAGATG+TGG + chr3.2:91781133-91781152 None:intergenic 40.0%
TTATGAACAGCCATCTTTGG+TGG - chr3.2:91782193-91782212 MS.gene069974:intron 40.0%
! AAGCCTTATCTCACTAAGTG+GGG - chr3.2:91781006-91781025 MS.gene069974:CDS 40.0%
! ACAATAAATTGTGGTTGGCC+TGG + chr3.2:91782679-91782698 None:intergenic 40.0%
! CAAGCCTTATCTCACTAAGT+GGG - chr3.2:91781005-91781024 MS.gene069974:CDS 40.0%
! CATGGGTTAAGTAGATTCCT+CGG - chr3.2:91782041-91782060 MS.gene069974:intron 40.0%
! CGCCGTTACTTTGAACAATT+TGG - chr3.2:91779862-91779881 MS.gene069974:intron 40.0%
! GGTTGTTGTTGTTGTTGTAG+TGG + chr3.2:91780986-91781005 None:intergenic 40.0%
! GTCCTGTTATTGATGGTAGA+AGG - chr3.2:91780332-91780351 MS.gene069974:intron 40.0%
! GTTCTTATCAGTGATGACGA+CGG + chr3.2:91779902-91779921 None:intergenic 40.0%
! TAAAGTCTTCGTTGGTGGAT+TGG - chr3.2:91779813-91779832 MS.gene069974:intron 40.0%
! TATTAGTCTCCATGTGGGTA+AGG - chr3.2:91781098-91781117 MS.gene069974:CDS 40.0%
! TTTTTCCCATCCTCTATTCC+CGG - chr3.2:91782121-91782140 MS.gene069974:CDS 40.0%
!! AATGAGTTTTGCTCTGAACG+TGG - chr3.2:91781806-91781825 MS.gene069974:CDS 40.0%
!! ATGAGTTTTGCTCTGAACGT+GGG - chr3.2:91781807-91781826 MS.gene069974:CDS 40.0%
!! TCACCTCTAAAGCATGATTC+TGG + chr3.2:91781166-91781185 None:intergenic 40.0%
!! TCCTTTGGAATAACTTTCCC+AGG - chr3.2:91781642-91781661 MS.gene069974:intron 40.0%
!! TGTTGATAGCCATAGGAAAG+TGG + chr3.2:91780655-91780674 None:intergenic 40.0%
!!! CTTTTCAGGTATACGGCATA+TGG - chr3.2:91781216-91781235 MS.gene069974:CDS 40.0%
AAATTCCCGGGAATAGAGGA+TGG + chr3.2:91782130-91782149 None:intergenic 45.0%
AACCAACTGAGCTATGCTCA+CGG + chr3.2:91781901-91781920 None:intergenic 45.0%
AATTCCCGGGAATAGAGGAT+GGG + chr3.2:91782129-91782148 None:intergenic 45.0%
ACCTGAATACGTATACCCAC+AGG - chr3.2:91781239-91781258 MS.gene069974:intron 45.0%
ACCTGTGGGTATACGTATTC+AGG + chr3.2:91781243-91781262 None:intergenic 45.0%
ACGCCAGAATCATGCTTTAG+AGG - chr3.2:91781160-91781179 MS.gene069974:intron 45.0%
AGACCACCATCTCCTTATGT+TGG - chr3.2:91780577-91780596 MS.gene069974:intron 45.0%
AGCCATAGGAAAGTGGTTGT+TGG + chr3.2:91780648-91780667 None:intergenic 45.0%
AGGTGTGTCAAGTGTCCAAT+AGG + chr3.2:91780143-91780162 None:intergenic 45.0%
ATCAGATTGTGCCCTATGGT+GGG - chr3.2:91781510-91781529 MS.gene069974:intron 45.0%
ATCTTTGTGTCGGACCCTAT+TGG - chr3.2:91780125-91780144 MS.gene069974:intron 45.0%
ATGCAGGGTTATACAGTACC+AGG - chr3.2:91781485-91781504 MS.gene069974:intron 45.0%
ATTATTATATGCAGCGGCCG+GGG - chr3.2:91781930-91781949 MS.gene069974:intron 45.0%
CAACTTCTACCGTGTCCAAT+AGG - chr3.2:91781331-91781350 MS.gene069974:intron 45.0%
CAGGCACACCATATATCTGA+AGG + chr3.2:91781391-91781410 None:intergenic 45.0%
CATTATTATATGCAGCGGCC+GGG - chr3.2:91781929-91781948 MS.gene069974:intron 45.0%
CCACTTAGTGAGATAAGGCT+TGG + chr3.2:91781007-91781026 None:intergenic 45.0%
CCTCAGTTTATGCAAGGTAG+CGG - chr3.2:91782703-91782722 MS.gene069974:CDS 45.0%
CTATGGCTATCAACAGGGAA+TGG - chr3.2:91780660-91780679 MS.gene069974:intron 45.0%
CTCGAACTTGATCCTGAACT+TGG + chr3.2:91779745-91779764 None:intergenic 45.0%
CTCTTGCCTTTCCTGTGTTA+TGG - chr3.2:91780781-91780800 MS.gene069974:intron 45.0%
CTTCAGATATATGGTGTGCC+TGG - chr3.2:91781389-91781408 MS.gene069974:intron 45.0%
CTTCCAACATAAGGAGATGG+TGG + chr3.2:91780583-91780602 None:intergenic 45.0%
GCATTATTATATGCAGCGGC+CGG - chr3.2:91781928-91781947 MS.gene069974:intron 45.0%
GCCCTTCTACCATCAATAAC+AGG + chr3.2:91780337-91780356 None:intergenic 45.0%
GCTAGGATATGGGACTTGAA+TGG + chr3.2:91781573-91781592 None:intergenic 45.0%
GCTTGACCCAATTGTCCATA+AGG + chr3.2:91781437-91781456 None:intergenic 45.0%
GGACACGGTAGAAGTTGAAA+AGG + chr3.2:91781328-91781347 None:intergenic 45.0%
GGGAATAGAGGATGGGAAAA+AGG + chr3.2:91782122-91782141 None:intergenic 45.0%
GGTATGTACAACCCTTATGC+TGG - chr3.2:91781353-91781372 MS.gene069974:intron 45.0%
GGTGTGTCAAGTGTCCAATA+GGG + chr3.2:91780142-91780161 None:intergenic 45.0%
TATCCTCCTTATGGGTGAGT+GGG - chr3.2:91780685-91780704 MS.gene069974:intron 45.0%
TATGATCAACACGGTAGCAC+CGG + chr3.2:91780184-91780203 None:intergenic 45.0%
TGCACAATGCAGATGTGGTT+AGG + chr3.2:91781128-91781147 None:intergenic 45.0%
TGTTCCTTCCTACCAAACAC+AGG - chr3.2:91782092-91782111 MS.gene069974:CDS 45.0%
TTAGGAACACCTTACCCACA+TGG + chr3.2:91781110-91781129 None:intergenic 45.0%
TTATCCTCCTTATGGGTGAG+TGG - chr3.2:91780684-91780703 MS.gene069974:intron 45.0%
! CAGGATCAAGTTCGAGTTCT+GGG - chr3.2:91779749-91779768 MS.gene069974:CDS 45.0%
! CCAAGCCTTATCTCACTAAG+TGG - chr3.2:91781004-91781023 MS.gene069974:CDS 45.0%
! TCAGGATCAAGTTCGAGTTC+TGG - chr3.2:91779748-91779767 MS.gene069974:CDS 45.0%
! TCCCGAGATTTGGTAATCAC+TGG - chr3.2:91780959-91780978 MS.gene069974:CDS 45.0%
! TGCATGGAATTGGAGGGTAT+AGG - chr3.2:91780261-91780280 MS.gene069974:intron 45.0%
! TTTTCCCATCCTCTATTCCC+GGG - chr3.2:91782122-91782141 MS.gene069974:CDS 45.0%
!! CATTCCCTGTTGATAGCCAT+AGG + chr3.2:91780662-91780681 None:intergenic 45.0%
!! TTTTTGGTCAGGTAGCCTAG+TGG + chr3.2:91782004-91782023 None:intergenic 45.0%
AACAGGACTTGGATCAGCAC+AGG + chr3.2:91780320-91780339 None:intergenic 50.0%
AAGAACACCGGACGATCCAA+AGG - chr3.2:91779916-91779935 MS.gene069974:intron 50.0%
ACCAACTGAGCTATGCTCAC+GGG + chr3.2:91781900-91781919 None:intergenic 50.0%
ACGCCCCACTTAGTGAGATA+AGG + chr3.2:91781012-91781031 None:intergenic 50.0%
ACTAAGTGGGGCGTAATCAC+TGG - chr3.2:91781018-91781037 MS.gene069974:CDS 50.0%
AGGACTGTACCGCTAGGATA+TGG + chr3.2:91781584-91781603 None:intergenic 50.0%
CAATTGGGTCAAGCTGTTCC+TGG - chr3.2:91781443-91781462 MS.gene069974:intron 50.0%
CATCAGATTGTGCCCTATGG+TGG - chr3.2:91781509-91781528 MS.gene069974:intron 50.0%
CCGCTACCTTGCATAAACTG+AGG + chr3.2:91782706-91782725 None:intergenic 50.0%
GCTCACAAAACCGTAGCCTT+TGG + chr3.2:91779935-91779954 None:intergenic 50.0%
GGACTGTACCGCTAGGATAT+GGG + chr3.2:91781583-91781602 None:intergenic 50.0%
GGATATGGGACTTGAATGGC+AGG + chr3.2:91781569-91781588 None:intergenic 50.0%
GGTCATCAGATTGTGCCCTA+TGG - chr3.2:91781506-91781525 MS.gene069974:intron 50.0%
GTAGCCATAACCTCCAACGT+AGG + chr3.2:91780626-91780645 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+TGG - chr3.2:91781900-91781919 MS.gene069974:intron 50.0%
TAGGGCACAATCTGATGACC+TGG + chr3.2:91781506-91781525 None:intergenic 50.0%
TATTCACATGGGAGAGGGGT+GGG + chr3.2:91781859-91781878 None:intergenic 50.0%
TTATTCACATGGGAGAGGGG+TGG + chr3.2:91781860-91781879 None:intergenic 50.0%
TTGATCCTGAACTTGGACCC+TGG + chr3.2:91779738-91779757 None:intergenic 50.0%
TTGGACACTTGACACACCTC+TGG - chr3.2:91780144-91780163 MS.gene069974:intron 50.0%
! GAACGTGGGTTTTCCATTCC+TGG - chr3.2:91781821-91781840 MS.gene069974:CDS 50.0%
! GTGAATAAGTGGGGTGTCCA+GGG + chr3.2:91781962-91781981 None:intergenic 50.0%
! TCTGGTCAGATCAGAAGTGC+CGG - chr3.2:91780162-91780181 MS.gene069974:intron 50.0%
!! AATTGTGGTTGGCCTGGAAC+TGG + chr3.2:91782673-91782692 None:intergenic 50.0%
!! CTTCGTTGGTGGATTGGCAT+GGG - chr3.2:91779819-91779838 MS.gene069974:intron 50.0%
!! TCTTCGTTGGTGGATTGGCA+TGG - chr3.2:91779818-91779837 MS.gene069974:intron 50.0%
AACCTCCAACGTAGGCACCA+CGG + chr3.2:91780618-91780637 None:intergenic 55.0%
ACCGGACGATCCAAAGGCTA+CGG - chr3.2:91779922-91779941 MS.gene069974:intron 55.0%
ACCGTAGCCTTTGGATCGTC+CGG + chr3.2:91779926-91779945 None:intergenic 55.0%
AGCGGTCCTGACCAAACAGA+TGG - chr3.2:91782721-91782740 MS.gene069974:CDS 55.0%
CAGCATCCCACTCACCCATA+AGG + chr3.2:91780694-91780713 None:intergenic 55.0%
CATCCCACTCACCCATAAGG+AGG + chr3.2:91780691-91780710 None:intergenic 55.0%
CGTGGACCCCCAATCTCATA+TGG - chr3.2:91780388-91780407 MS.gene069974:intron 55.0%
GCATACCAGGGTCCAAGTTC+AGG - chr3.2:91779730-91779749 MS.gene069974:CDS 55.0%
GCTGTATAACCATGACCGCC+AGG + chr3.2:91781464-91781483 None:intergenic 55.0%
GGAATTGCTGCACCAGTTCC+AGG - chr3.2:91782658-91782677 MS.gene069974:CDS 55.0%
GGCACTTCTGATCTGACCAG+AGG + chr3.2:91780163-91780182 None:intergenic 55.0%
GGTGACTTTCCGTGATCCAG+AGG - chr3.2:91780282-91780301 MS.gene069974:intron 55.0%
GGTGCCTACGTTGGAGGTTA+TGG - chr3.2:91780619-91780638 MS.gene069974:intron 55.0%
TATGAGATTGGGGGTCCACG+TGG + chr3.2:91780388-91780407 None:intergenic 55.0%
TCAGAACGTGGGGAACACAC+TGG - chr3.2:91781780-91781799 MS.gene069974:CDS 55.0%
TCCCGTGAGCATAGCTCAGT+TGG - chr3.2:91781896-91781915 MS.gene069974:intron 55.0%
TCCTAGCAGCCTCTGGATCA+CGG + chr3.2:91780294-91780313 None:intergenic 55.0%
TGGGACTTGAATGGCAGGCA+CGG + chr3.2:91781564-91781583 None:intergenic 55.0%
TTGGGTCAAGCTGTTCCTGG+CGG - chr3.2:91781446-91781465 MS.gene069974:intron 55.0%
! GGTGAATAAGTGGGGTGTCC+AGG + chr3.2:91781963-91781982 None:intergenic 55.0%
! TGTGACTCGGGCCATTCCTT+TGG - chr3.2:91781627-91781646 MS.gene069974:intron 55.0%
ACCTCCAACGTAGGCACCAC+GGG + chr3.2:91780617-91780636 None:intergenic 60.0%
CAAGCTGTTCCTGGCGGTCA+TGG - chr3.2:91781452-91781471 MS.gene069974:intron 60.0%
GGAAGTTTGCAACCAGCCCG+TGG - chr3.2:91780598-91780617 MS.gene069974:intron 60.0%
GGAATGGCCCGAGTCACAAG+TGG + chr3.2:91781625-91781644 None:intergenic 60.0%
GGACAGAGGACTGTACCGCT+AGG + chr3.2:91781590-91781609 None:intergenic 60.0%
GGGACTTGAATGGCAGGCAC+GGG + chr3.2:91781563-91781582 None:intergenic 60.0%
TCCGTGATCCAGAGGCTGCT+AGG - chr3.2:91780290-91780309 MS.gene069974:intron 60.0%
CAGGCTCTCCTAGCAGCCTC+TGG + chr3.2:91780301-91780320 None:intergenic 65.0%
GCTTCGCATGGTCGTCCACG+TGG - chr3.2:91780370-91780389 MS.gene069974:intron 65.0%
GGTGTCCAGGGTTCGAACCC+CGG + chr3.2:91781950-91781969 None:intergenic 65.0%
CCAACGTAGGCACCACGGGC+TGG + chr3.2:91780613-91780632 None:intergenic 70.0%
CCAGCCCGTGGTGCCTACGT+TGG - chr3.2:91780610-91780629 MS.gene069974:intron 70.0%
GCCCGTGGTGCCTACGTTGG+AGG - chr3.2:91780613-91780632 MS.gene069974:intron 70.0%
AGCGGCCGGGGTTCGAACCC+TGG - chr3.2:91781942-91781961 MS.gene069974:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 91779727 91782747 91779727 ID=MS.gene069974
chr3.2 mRNA 91779727 91782747 91779727 ID=MS.gene069974.t1;Parent=MS.gene069974
chr3.2 exon 91782526 91782747 91782526 ID=MS.gene069974.t1.exon1;Parent=MS.gene069974.t1
chr3.2 CDS 91782526 91782747 91782526 ID=cds.MS.gene069974.t1;Parent=MS.gene069974.t1
chr3.2 exon 91782065 91782191 91782065 ID=MS.gene069974.t1.exon2;Parent=MS.gene069974.t1
chr3.2 CDS 91782065 91782191 91782065 ID=cds.MS.gene069974.t1;Parent=MS.gene069974.t1
chr3.2 exon 91781776 91781905 91781776 ID=MS.gene069974.t1.exon3;Parent=MS.gene069974.t1
chr3.2 CDS 91781776 91781905 91781776 ID=cds.MS.gene069974.t1;Parent=MS.gene069974.t1
chr3.2 exon 91781214 91781250 91781214 ID=MS.gene069974.t1.exon4;Parent=MS.gene069974.t1
chr3.2 CDS 91781214 91781250 91781214 ID=cds.MS.gene069974.t1;Parent=MS.gene069974.t1
chr3.2 exon 91780881 91781121 91780881 ID=MS.gene069974.t1.exon5;Parent=MS.gene069974.t1
chr3.2 CDS 91780881 91781121 91780881 ID=cds.MS.gene069974.t1;Parent=MS.gene069974.t1
chr3.2 exon 91779727 91779815 91779727 ID=MS.gene069974.t1.exon6;Parent=MS.gene069974.t1
chr3.2 CDS 91779727 91779815 91779727 ID=cds.MS.gene069974.t1;Parent=MS.gene069974.t1
Gene Sequence

>MS.gene069974

ATGGCATACCAGGGTCCAAGTTCAGGATCAAGTTCGAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACTACTTATACTAAAGTCTTCGTTGGTGGATTGGCATGGGAGACTCAGAGTGAAACTATGCGCCGTTACTTTGAACAATTTGGAGATATTCTTGAAGCCGTCGTCATCACTGATAAGAACACCGGACGATCCAAAGGCTACGGTTTTGTGAGCATCTTTGCTTTTATCAATTCATTTATTAGTTGTTGACATTACTATTACTACCCTATTTCTTTCTTTGTTTATATTCTATCATATAAGGCTATAACTCATTTTATTACCAAAACATTGTTGAACACACGACACCGATTGTAATTCGAGAAAATGATGACATGGAATCACATATCTTTGTGTCGGACCCTATTGGACACTTGACACACCTCTGGTCAGATCAGAAGTGCCGGTGCTACCGTGTTGATCATACTAGCATATGGTTGCATTTTTTTATTTACTATAGAATGACTTGGTTTCTATCTTATATGCATGGAATTGGAGGGTATAGGTGACTTTCCGTGATCCAGAGGCTGCTAGGAGAGCCTGTGCTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCGCATGGTCGTCCACGTGGACCCCCAATCTCATATGGTATGCTATTATTTCTTAACAAATGAGTTTATTCTCAAGTGATGTTATATTATTCTTTGATATGCATAGCAGTCTGCTGCAACTTGAAGTTTCCAGAATACTCTTCCTACATAGAATATACATTGCTTCTATTTTCTGATTTCTTCTTATCTTTTATAGGACGGGTAAGACCACCATCTCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCCTACGTTGGAGGTTATGGCTACCAACAACCACTTTCCTATGGCTATCAACAGGGAATGGTTTATCCTCCTTATGGGTGAGTGGGATGCTGTTGCACACTATTGCAAAAACTGGATTTGAAGATTATTTTCACCGTCAATCTGCTAATAATAATAATGCTCTTGCCTTTCCTGTGTTATGGTTCTTTGTGTCCATGCTTATTTTAGCAGTTACATAACTCTTTTTGAACCCAGTTATCGTGTTTTTTTGACTGGTATATGTCAGTGATGAGGTCAACTAGACCTATACAACATATTCTTGCAAGTACTTGATTAGTAGTTAGTTAGGAGATGAAAATCCCGAGATTTGGTAATCACTGGTCCACTACAACAACAACAACAACCAAGCCTTATCTCACTAAGTGGGGCGTAATCACTGGTCCACTGTATATGGAAAACCTATGTCAATTGGATGTAATAAACTAATGACCATTTAATATTAGTCTCCATGTGGGTAAGGTGTTCCTAACCACATCTGCATTGTGCATCTAAATGTATCACGCCAGAATCATGCTTTAGAGGTGATCTTTTCAACATTATATTTGGTTGTTTTATCTTTTCAGGTATACGGCATATGGACCTGAATACGTATACCCACAGGTCATATCAGTTTTTTTTTTTTTATTTGGCTTAGGATAAATGTCTATTATTTGTGAAATGCTGACCTTTTCAACTTCTACCGTGTCCAATAGGGTATGTACAACCCTTATGCTGGTCAACAACAGTACCTTCAGATATATGGTGTGCCTGGTGCGATGAATACAACTATTTATCCTTATGGACAATTGGGTCAAGCTGTTCCTGGCGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGGTCCAATGTTAATGCAATAACAACTTCACCCGTGCCTGCCATTCAAGTCCCATATCCTAGCGGTACAGTCCTCTGTCCAAGAAAGAATTTCCACTTGTGACTCGGGCCATTCCTTTGGAATAACTTTCCCAGGAAAACAATAATGATAATTTTATTCCTAGGATTTTTTCAAAGAAATGAACCATTACATTGATAGACCTTAAGCCTCATTACTCACAAAAAAGGAAACCGTTACATTAAATAATTTATCAGAACGTGGGGAACACACTGGTAAAATGAGTTTTGCTCTGAACGTGGGTTTTCCATTCCTGGTAATAGAATTTTCCCACCCCTCTCCCATGTGAATAAAAATGACTAGAACATGTCCCGTGAGCATAGCTCAGTTGGTTGGACAATGCATTATTATATGCAGCGGCCGGGGTTCGAACCCTGGACACCCCACTTATTCACCTTATAAGGTGAATTCTAGCCACTAGGCTACCTGACCAAAAAAAAAAAATTTACTAGAACATGGGTTAAGTAGATTCCTCGGTATTATTTATTCCTAGGCATATTATTTTTGTTCCTTCCTACCAAACACAGGAATTCCTTTTTCCCATCCTCTATTCCCGGGAATTTATATTTTATTTTTTTATTTCTGAAACAAATGCTCCCTTTTTGTTTATGAACAGCCATCTTTGGTGGATATTCTTTGAGAAACAAAAGCCCATATATATTGGAATTAACATTCATTTGAAAACATATTAGCAAATAACCTTCAATTCTTAACAAGCATTGATTGGCCAGATCACATACACTTATCAGCTGTTGGTATATAAATAAATGAGATTAATGAATGATACGACATATGTAGGCAATTTCATTTGTCAAACCCTAAATTTATGTACAAAATTAAGGGTTTTGTAATATATGATAGAAGGTTGGGTTTATTTAATTAAAAAATATAGGTAATTGAAGTTCTGATCAACAGGAAAGTAGCTAGTCTGTAAAGAATGGAGATTCGTTTTATATGTACAGTGTTGTAAGATTGCATATAGAGCAAGTCATTAAAATCTATTGATTATTATTTAGCACAAAACTTTAAATTCTGTGCAAATAGGTGTGATTCGTAAGTATTTGATTTTCAGGAATTGCTGCACCAGTTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGATGGTTGA
Protein sequence

>MS.gene069974.t1

MAYQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPPSPYVGSLQPARGAYVGGYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQGMYNPYAGQQQYLQIYGVPGAMNTTIYPYGQLGQAVPGGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPVPAIQVPYPSGIAAPVPGQPQFIVSPQFMQGSGPDQTDG