Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069985.t1 | XP_003603866.1 | 90.1 | 333 | 28 | 1 | 1 | 333 | 1 | 328 | 1.10E-156 | 562.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069985.t1 | Q8GWA7 | 53.6 | 293 | 130 | 4 | 22 | 311 | 56 | 345 | 7.8e-79 | 295.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069985.t1 | G7J6F8 | 90.1 | 333 | 28 | 1 | 1 | 333 | 1 | 328 | 7.8e-157 | 562.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050333 | MS.gene069985 | 0.805153 | 1.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069985.t1 | MTR_3g116050 | 93.994 | 333 | 15 | 1 | 1 | 333 | 1 | 328 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069985.t1 | AT1G20830 | 53.356 | 298 | 133 | 4 | 17 | 311 | 51 | 345 | 6.26e-106 | 314 |
| MS.gene069985.t1 | AT1G20830 | 60.494 | 243 | 93 | 3 | 72 | 311 | 4 | 246 | 1.18e-104 | 307 |
Find 77 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTTGCTGTTGTAATTT+TGG | 0.111441 | 3.2:+91702358 | MS.gene069985:CDS |
| CATCCCAATGCCGCAATTTC+TGG | 0.160726 | 3.2:+91702203 | MS.gene069985:CDS |
| AAGAAGTTGATGATGAAATT+TGG | 0.225810 | 3.2:-91702169 | None:intergenic |
| TTGGGAGCAATTTACCGATT+TGG | 0.287214 | 3.2:+91702333 | MS.gene069985:CDS |
| AGCAAATCATGGCGTCAATT+TGG | 0.293604 | 3.2:+91701893 | None:intergenic |
| TGGGAGCAATTTACCGATTT+GGG | 0.323263 | 3.2:+91702334 | MS.gene069985:CDS |
| GGGCTTCAAGCTTTCTCTGC+AGG | 0.352570 | 3.2:-91703596 | None:intergenic |
| TCAAATTCTTTAGCATTGAT+AGG | 0.353758 | 3.2:-91704290 | None:intergenic |
| GATGCACTTCCAAAGTTATT+CGG | 0.363736 | 3.2:-91704413 | None:intergenic |
| GAAGAGCTCTTTAAACAATC+AGG | 0.385369 | 3.2:+91704355 | MS.gene069985:CDS |
| CCGATGACAAAGGGGCAAAA+AGG | 0.394330 | 3.2:-91702033 | None:intergenic |
| TCCTCTTGAGTAAGTGTGAC+AGG | 0.397039 | 3.2:-91703342 | None:intergenic |
| CATCGCTTCCTTATCACAAA+TGG | 0.400137 | 3.2:+91702102 | MS.gene069985:CDS |
| AGATGTGTGGAAAGGTTTAC+CGG | 0.414408 | 3.2:+91703313 | MS.gene069985:CDS |
| ACTTCTTCTTGTGCTACTAC+TGG | 0.419210 | 3.2:-91702058 | None:intergenic |
| TTGGAATTCCATTTGTGATA+AGG | 0.420118 | 3.2:-91702110 | None:intergenic |
| GACAGCAGGCCGAATAACTT+TGG | 0.423013 | 3.2:+91704404 | MS.gene069985:CDS |
| CCTACCAGAAATTGCGGCAT+TGG | 0.435076 | 3.2:-91702207 | None:intergenic |
| TTGATGATGAAATTTGGAAA+TGG | 0.444261 | 3.2:-91702163 | None:intergenic |
| CACACTTACTCAAGAGGAAC+AGG | 0.447227 | 3.2:+91703347 | MS.gene069985:CDS |
| TTTGGAAGTGCATCATCATC+TGG | 0.449415 | 3.2:+91704422 | MS.gene069985:CDS |
| GCAACCACCTCTACAGATAT+CGG | 0.457074 | 3.2:+91703501 | MS.gene069985:CDS |
| TAAGTGTGACAGGGGCTAAC+CGG | 0.458683 | 3.2:-91703332 | None:intergenic |
| CTACCAGAAATTGCGGCATT+GGG | 0.461927 | 3.2:-91702206 | None:intergenic |
| GGCTTCAAGCTTTCTCTGCA+GGG | 0.469067 | 3.2:-91703595 | None:intergenic |
| ATCTGTAGAGGTGGTTGCAA+AGG | 0.470698 | 3.2:-91703496 | None:intergenic |
| GAACTGAGTCTCCTTCCTTA+AGG | 0.471097 | 3.2:-91703425 | None:intergenic |
| TGTAGACTAATCGAAACATT+GGG | 0.478399 | 3.2:+91702315 | MS.gene069985:intron |
| GTTGCAAAGGGGTGATTCGC+AGG | 0.478666 | 3.2:-91703483 | None:intergenic |
| ATTGTATCGGGATCAACATC+TGG | 0.478900 | 3.2:-91703450 | None:intergenic |
| ACAGCAACACAGACCCAAAT+CGG | 0.483257 | 3.2:-91702347 | None:intergenic |
| CCTCATGCTCAGCTTGAATA+CGG | 0.491562 | 3.2:-91703572 | None:intergenic |
| CTACTGGTACCGATGACAAA+GGG | 0.493008 | 3.2:-91702042 | None:intergenic |
| CAGAAATTGCGGCATTGGGA+TGG | 0.494001 | 3.2:-91702202 | None:intergenic |
| TGTTGTTTGAATTGTTGAGT+TGG | 0.499265 | 3.2:-91702129 | None:intergenic |
| ATGTTGATCCCGATACAATC+AGG | 0.507636 | 3.2:+91703454 | MS.gene069985:CDS |
| TCTGTAGAGGTGGTTGCAAA+GGG | 0.509587 | 3.2:-91703495 | None:intergenic |
| GGAATCCACCTGATTGTATC+GGG | 0.511366 | 3.2:-91703462 | None:intergenic |
| ACGCACGTGATCTCCTTCTC+TGG | 0.511994 | 3.2:-91703377 | None:intergenic |
| CATGATCATTTAATCTGCCA+TGG | 0.520486 | 3.2:-91704328 | None:intergenic |
| CCTCTTGAGTAAGTGTGACA+GGG | 0.528748 | 3.2:-91703341 | None:intergenic |
| ACAAGATCAGCTACGGAACC+AGG | 0.529125 | 3.2:-91702428 | None:intergenic |
| AGGAATCCACCTGATTGTAT+CGG | 0.532431 | 3.2:-91703463 | None:intergenic |
| CCTCCTCAAAATTAGACAGC+AGG | 0.533371 | 3.2:+91704390 | MS.gene069985:CDS |
| TTGTAGACTAATCGAAACAT+TGG | 0.537325 | 3.2:+91702314 | MS.gene069985:intron |
| AACAGGCGGTTCACCAGAGA+AGG | 0.544520 | 3.2:+91703364 | MS.gene069985:CDS |
| CATTTGTGATAAGGAAGCGA+TGG | 0.548151 | 3.2:-91702101 | None:intergenic |
| GGAGATCACGTGCGTATCAG+TGG | 0.548992 | 3.2:+91703385 | MS.gene069985:CDS |
| CCCTGTCACACTTACTCAAG+AGG | 0.564938 | 3.2:+91703341 | MS.gene069985:CDS |
| ATTCGATAATCCCTTGGTCA+AGG | 0.575622 | 3.2:+91703266 | MS.gene069985:CDS |
| ATTTGTGATAAGGAAGCGAT+GGG | 0.587501 | 3.2:-91702100 | None:intergenic |
| GAGAGACCATTCGACTCCCA+TGG | 0.588483 | 3.2:+91704311 | MS.gene069985:CDS |
| AGATCCATTCGATAATCCCT+TGG | 0.593415 | 3.2:+91703260 | MS.gene069985:CDS |
| TAGACGCGGTCAATTGAGAT+CGG | 0.593965 | 3.2:+91702451 | MS.gene069985:CDS |
| CCGTATTCAAGCTGAGCATG+AGG | 0.599509 | 3.2:+91703572 | MS.gene069985:CDS |
| AAGTGTAGAGATGTGTGGAA+AGG | 0.612784 | 3.2:+91703305 | MS.gene069985:CDS |
| TGAAAGCCTACCAGAAATTG+CGG | 0.615471 | 3.2:-91702213 | None:intergenic |
| TGCTCAGCTTGAATACGGAA+AGG | 0.619175 | 3.2:-91703567 | None:intergenic |
| ATGATCATTTAATCTGCCAT+GGG | 0.621182 | 3.2:-91704327 | None:intergenic |
| CTCACCGATATCTGTAGAGG+TGG | 0.625854 | 3.2:-91703505 | None:intergenic |
| TTGACCAAGGGATTATCGAA+TGG | 0.627921 | 3.2:-91703264 | None:intergenic |
| GCGTCTAACAAGATCAGCTA+CGG | 0.634159 | 3.2:-91702435 | None:intergenic |
| GTCCTCACCGATATCTGTAG+AGG | 0.648459 | 3.2:-91703508 | None:intergenic |
| ACTACTGGTACCGATGACAA+AGG | 0.665511 | 3.2:-91702043 | None:intergenic |
| TACTGGTACCGATGACAAAG+GGG | 0.670062 | 3.2:-91702041 | None:intergenic |
| TTGATCCCGATACAATCAGG+TGG | 0.673066 | 3.2:+91703457 | MS.gene069985:CDS |
| CCTTCCTTAAGGAAAACTGT+GGG | 0.676647 | 3.2:-91703414 | None:intergenic |
| CTCTTGAGTAAGTGTGACAG+GGG | 0.681129 | 3.2:-91703340 | None:intergenic |
| TCCTTCCTTAAGGAAAACTG+TGG | 0.681803 | 3.2:-91703415 | None:intergenic |
| AAATCAAGTGTAGAGATGTG+TGG | 0.686378 | 3.2:+91703300 | MS.gene069985:CDS |
| CAATTGAGATCGGATAGAAG+AGG | 0.688587 | 3.2:+91702461 | MS.gene069985:CDS |
| GTATCGGGATCAACATCTGG+AGG | 0.693969 | 3.2:-91703447 | None:intergenic |
| CTGTAGAGGTGGTTGCAAAG+GGG | 0.697756 | 3.2:-91703494 | None:intergenic |
| GTAGCTGATCTTGTTAGACG+CGG | 0.705664 | 3.2:+91702437 | MS.gene069985:CDS |
| ACTTACTCAAGAGGAACAGG+CGG | 0.707329 | 3.2:+91703350 | MS.gene069985:CDS |
| AATCTGCCATGGGAGTCGAA+TGG | 0.713980 | 3.2:-91704317 | None:intergenic |
| CACCTCTACAGATATCGGTG+AGG | 0.728300 | 3.2:+91703506 | MS.gene069985:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTGATTAAATTTAAAT+TGG | - | chr3.2:91704183-91704202 | None:intergenic | 10.0% |
| !! | TAATAATATATATTACTACT+AGG | + | chr3.2:91703137-91703156 | MS.gene069985:intron | 10.0% |
| !! | GTCTGAATAAAAAAAATTAA+TGG | + | chr3.2:91704011-91704030 | MS.gene069985:intron | 15.0% |
| !! | TAAATTCATGTATATTTCTT+TGG | - | chr3.2:91703111-91703130 | None:intergenic | 15.0% |
| !!! | AATTTTATAATCCAAATCTA+AGG | - | chr3.2:91702901-91702920 | None:intergenic | 15.0% |
| !!! | TCTTATTTTAATTCAGATTA+GGG | + | chr3.2:91702260-91702279 | MS.gene069985:intron | 15.0% |
| !!! | TTCTTATTTTAATTCAGATT+AGG | + | chr3.2:91702259-91702278 | MS.gene069985:intron | 15.0% |
| !! | AATCAAGAATATCAAGAAAT+TGG | + | chr3.2:91704193-91704212 | MS.gene069985:intron | 20.0% |
| !! | TGCAGAATAAATAATACAAA+AGG | - | chr3.2:91704239-91704258 | None:intergenic | 20.0% |
| !!! | AATTGATTTTTCCTTAGATT+TGG | + | chr3.2:91702887-91702906 | MS.gene069985:intron | 20.0% |
| !!! | TTATCTAAATTGACTTATCT+AGG | - | chr3.2:91702548-91702567 | None:intergenic | 20.0% |
| !!! | TTTTGTATTATTTATTCTGC+AGG | + | chr3.2:91704238-91704257 | MS.gene069985:intron | 20.0% |
| !!! | TTTTTACCCTCTTTTTTTAT+TGG | + | chr3.2:91704123-91704142 | MS.gene069985:intron | 20.0% |
| !!! | TTTTTTATTCAGACATTACT+TGG | - | chr3.2:91704005-91704024 | None:intergenic | 20.0% |
| ! | AAAAATGTTAGTCAAAAGCA+TGG | + | chr3.2:91703540-91703559 | MS.gene069985:CDS | 25.0% |
| ! | AAAGACAACAATGTAATAAC+GGG | - | chr3.2:91703192-91703211 | None:intergenic | 25.0% |
| ! | ACAAAACATTAGACATAACA+TGG | + | chr3.2:91703817-91703836 | MS.gene069985:intron | 25.0% |
| ! | ATTTAGATTAACCGTTAGTT+TGG | + | chr3.2:91702574-91702593 | MS.gene069985:intron | 25.0% |
| ! | GAAAGACAACAATGTAATAA+CGG | - | chr3.2:91703193-91703212 | None:intergenic | 25.0% |
| ! | TAAATAATACAAAAGGTGAG+TGG | - | chr3.2:91704232-91704251 | None:intergenic | 25.0% |
| ! | TTAGAGCTTGAACAAAATTA+TGG | + | chr3.2:91702659-91702678 | MS.gene069985:intron | 25.0% |
| !! | GGTTTTTATGGTATTTGATA+TGG | + | chr3.2:91702288-91702307 | MS.gene069985:intron | 25.0% |
| !! | TAAAAGGCAAAAGTGATTTT+TGG | + | chr3.2:91702814-91702833 | MS.gene069985:intron | 25.0% |
| !! | TTAATTCAGATTAGGGTTTT+GGG | + | chr3.2:91702267-91702286 | MS.gene069985:intron | 25.0% |
| !! | TTTAATTCAGATTAGGGTTT+TGG | + | chr3.2:91702266-91702285 | MS.gene069985:intron | 25.0% |
| !!! | AAGAAGTTGATGATGAAATT+TGG | - | chr3.2:91702172-91702191 | None:intergenic | 25.0% |
| !!! | TCAAATTCTTTAGCATTGAT+AGG | - | chr3.2:91704293-91704312 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCCTGGAAAATT+TGG | - | chr3.2:91702405-91702424 | None:intergenic | 25.0% |
| !!! | TTGATGATGAAATTTGGAAA+TGG | - | chr3.2:91702166-91702185 | None:intergenic | 25.0% |
| ATGATCATTTAATCTGCCAT+GGG | - | chr3.2:91704330-91704349 | None:intergenic | 30.0% | |
| ATGTAAGTCTTAGCAGAATA+AGG | + | chr3.2:91703625-91703644 | MS.gene069985:intron | 30.0% | |
| ATTATTTATTCTGCAGGAAG+AGG | + | chr3.2:91704244-91704263 | MS.gene069985:intron | 30.0% | |
| CTTCTGCCAATAAAAAAAGA+GGG | - | chr3.2:91704132-91704151 | None:intergenic | 30.0% | |
| GTATCTATCGATCTTCAATT+AGG | + | chr3.2:91701950-91701969 | MS.gene069985:intron | 30.0% | |
| TATCCATACACTCTTCATTA+GGG | - | chr3.2:91704039-91704058 | None:intergenic | 30.0% | |
| TGTAGACTAATCGAAACATT+GGG | + | chr3.2:91702315-91702334 | MS.gene069985:intron | 30.0% | |
| TTGGAATTCCATTTGTGATA+AGG | - | chr3.2:91702113-91702132 | None:intergenic | 30.0% | |
| TTGTAGACTAATCGAAACAT+TGG | + | chr3.2:91702314-91702333 | MS.gene069985:intron | 30.0% | |
| ! | AAATTGACTTATCTAGGCAT+TGG | - | chr3.2:91702542-91702561 | None:intergenic | 30.0% |
| ! | AATTGACTTATCTAGGCATT+GGG | - | chr3.2:91702541-91702560 | None:intergenic | 30.0% |
| ! | GCTAAGACTTACATTTTGTA+GGG | - | chr3.2:91703619-91703638 | None:intergenic | 30.0% |
| ! | TGCTAAGACTTACATTTTGT+AGG | - | chr3.2:91703620-91703639 | None:intergenic | 30.0% |
| ! | TGGACTTATCTTGACATTTT+TGG | + | chr3.2:91703895-91703914 | MS.gene069985:intron | 30.0% |
| ! | TGTTGTTTGAATTGTTGAGT+TGG | - | chr3.2:91702132-91702151 | None:intergenic | 30.0% |
| !! | AAGAGTGTATGGATACATTT+TGG | + | chr3.2:91704044-91704063 | MS.gene069985:intron | 30.0% |
| !!! | AATTTTGGTTGCTTCTTTGA+GGG | + | chr3.2:91702373-91702392 | MS.gene069985:CDS | 30.0% |
| !!! | ATTAGGGTTTTGGGTTTTTA+TGG | + | chr3.2:91702276-91702295 | MS.gene069985:intron | 30.0% |
| !!! | ATTTTGATTGCTGTTTAGTC+TGG | - | chr3.2:91702701-91702720 | None:intergenic | 30.0% |
| !!! | GTTTGGCTTCACTTTTTAAA+AGG | + | chr3.2:91702798-91702817 | MS.gene069985:intron | 30.0% |
| !!! | TAATTTTGGTTGCTTCTTTG+AGG | + | chr3.2:91702372-91702391 | MS.gene069985:CDS | 30.0% |
| AAATCAAGTGTAGAGATGTG+TGG | + | chr3.2:91703300-91703319 | MS.gene069985:CDS | 35.0% | |
| ATCCATACACTCTTCATTAG+GGG | - | chr3.2:91704038-91704057 | None:intergenic | 35.0% | |
| ATCCTAGTTGCTAAGGATTT+GGG | + | chr3.2:91703709-91703728 | MS.gene069985:intron | 35.0% | |
| ATTCTGTTCTGCCAAACTAA+CGG | - | chr3.2:91702588-91702607 | None:intergenic | 35.0% | |
| ATTTGTGATAAGGAAGCGAT+GGG | - | chr3.2:91702103-91702122 | None:intergenic | 35.0% | |
| CATGATCATTTAATCTGCCA+TGG | - | chr3.2:91704331-91704350 | None:intergenic | 35.0% | |
| CCTTCTGCCAATAAAAAAAG+AGG | - | chr3.2:91704133-91704152 | None:intergenic | 35.0% | |
| GAAGAGCTCTTTAAACAATC+AGG | + | chr3.2:91704355-91704374 | MS.gene069985:CDS | 35.0% | |
| GATGCACTTCCAAAGTTATT+CGG | - | chr3.2:91704416-91704435 | None:intergenic | 35.0% | |
| GTATCCATACACTCTTCATT+AGG | - | chr3.2:91704040-91704059 | None:intergenic | 35.0% | |
| TAGCAACTAGGATAAAGACA+TGG | - | chr3.2:91703702-91703721 | None:intergenic | 35.0% | |
| TATCCTAGTTGCTAAGGATT+TGG | + | chr3.2:91703708-91703727 | MS.gene069985:intron | 35.0% | |
| TGTCTTTATCCTAGTTGCTA+AGG | + | chr3.2:91703702-91703721 | MS.gene069985:intron | 35.0% | |
| TGTTTAGTCTGGCAAAATTG+TGG | - | chr3.2:91702690-91702709 | None:intergenic | 35.0% | |
| ! | TCTAAAACCGCATCAAACAT+AGG | - | chr3.2:91703663-91703682 | None:intergenic | 35.0% |
| !! | CTGTGTTGCTGTTGTAATTT+TGG | + | chr3.2:91702358-91702377 | MS.gene069985:CDS | 35.0% |
| !! | TATGTTTGATGCGGTTTTAG+AGG | + | chr3.2:91703662-91703681 | MS.gene069985:intron | 35.0% |
| !! | TGTGCATGTTTTTCAGATCA+AGG | + | chr3.2:91703223-91703242 | MS.gene069985:intron | 35.0% |
| !! | TTTGTTCAAGCTCTAAAGTG+TGG | - | chr3.2:91702655-91702674 | None:intergenic | 35.0% |
| !!! | CCTCTTTTTTTATTGGCAGA+AGG | + | chr3.2:91704130-91704149 | MS.gene069985:intron | 35.0% |
| AAGTGTAGAGATGTGTGGAA+AGG | + | chr3.2:91703305-91703324 | MS.gene069985:CDS | 40.0% | |
| ACGGGAAGCTAAATCTCAAT+AGG | - | chr3.2:91703174-91703193 | None:intergenic | 40.0% | |
| AGATCCATTCGATAATCCCT+TGG | + | chr3.2:91703260-91703279 | MS.gene069985:CDS | 40.0% | |
| AGATGTGTGGAAAGGTTTAC+CGG | + | chr3.2:91703313-91703332 | MS.gene069985:CDS | 40.0% | |
| AGGAATCCACCTGATTGTAT+CGG | - | chr3.2:91703466-91703485 | None:intergenic | 40.0% | |
| ATGTTGATCCCGATACAATC+AGG | + | chr3.2:91703454-91703473 | MS.gene069985:CDS | 40.0% | |
| ATTCGATAATCCCTTGGTCA+AGG | + | chr3.2:91703266-91703285 | MS.gene069985:CDS | 40.0% | |
| ATTGTATCGGGATCAACATC+TGG | - | chr3.2:91703453-91703472 | None:intergenic | 40.0% | |
| CAACAGTCCTATGTTTGATG+CGG | + | chr3.2:91703653-91703672 | MS.gene069985:intron | 40.0% | |
| CAATTGAGATCGGATAGAAG+AGG | + | chr3.2:91702461-91702480 | MS.gene069985:CDS | 40.0% | |
| CATCGCTTCCTTATCACAAA+TGG | + | chr3.2:91702102-91702121 | MS.gene069985:CDS | 40.0% | |
| CATTTGTGATAAGGAAGCGA+TGG | - | chr3.2:91702104-91702123 | None:intergenic | 40.0% | |
| CCTTCCTTAAGGAAAACTGT+GGG | - | chr3.2:91703417-91703436 | None:intergenic | 40.0% | |
| GAAGCACATACTTCTACATG+AGG | - | chr3.2:91704098-91704117 | None:intergenic | 40.0% | |
| TCCTAGTTGCTAAGGATTTG+GGG | + | chr3.2:91703710-91703729 | MS.gene069985:intron | 40.0% | |
| TCCTTCCTTAAGGAAAACTG+TGG | - | chr3.2:91703418-91703437 | None:intergenic | 40.0% | |
| TGAAAGCCTACCAGAAATTG+CGG | - | chr3.2:91702216-91702235 | None:intergenic | 40.0% | |
| TTGACCAAGGGATTATCGAA+TGG | - | chr3.2:91703267-91703286 | None:intergenic | 40.0% | |
| ! | ACTTCTTCTTGTGCTACTAC+TGG | - | chr3.2:91702061-91702080 | None:intergenic | 40.0% |
| ! | CTTTTGCTAACCTTGACCAA+GGG | - | chr3.2:91703279-91703298 | None:intergenic | 40.0% |
| ! | TACATGAGGTGTAAGAGTGT+TGG | - | chr3.2:91704084-91704103 | None:intergenic | 40.0% |
| ! | TTGGGAGCAATTTACCGATT+TGG | + | chr3.2:91702333-91702352 | MS.gene069985:CDS | 40.0% |
| ! | TTTGGAAGTGCATCATCATC+TGG | + | chr3.2:91704422-91704441 | MS.gene069985:CDS | 40.0% |
| !! | CTGCTGTCTAATTTTGAGGA+GGG | - | chr3.2:91704392-91704411 | None:intergenic | 40.0% |
| !! | TGCTGTCTAATTTTGAGGAG+GGG | - | chr3.2:91704391-91704410 | None:intergenic | 40.0% |
| !! | TGGGAGCAATTTACCGATTT+GGG | + | chr3.2:91702334-91702353 | MS.gene069985:CDS | 40.0% |
| ACAGCAACACAGACCCAAAT+CGG | - | chr3.2:91702350-91702369 | None:intergenic | 45.0% | |
| ACTTACTCAAGAGGAACAGG+CGG | + | chr3.2:91703350-91703369 | MS.gene069985:CDS | 45.0% | |
| ATCTGTAGAGGTGGTTGCAA+AGG | - | chr3.2:91703499-91703518 | None:intergenic | 45.0% | |
| CACACTTACTCAAGAGGAAC+AGG | + | chr3.2:91703347-91703366 | MS.gene069985:CDS | 45.0% | |
| CCTAGTTGCTAAGGATTTGG+GGG | + | chr3.2:91703711-91703730 | MS.gene069985:intron | 45.0% | |
| CCTCATGCTCAGCTTGAATA+CGG | - | chr3.2:91703575-91703594 | None:intergenic | 45.0% | |
| CCTCCTCAAAATTAGACAGC+AGG | + | chr3.2:91704390-91704409 | MS.gene069985:CDS | 45.0% | |
| CCTCTTGAGTAAGTGTGACA+GGG | - | chr3.2:91703344-91703363 | None:intergenic | 45.0% | |
| CGTTCAACTCACTCTTACGT+AGG | + | chr3.2:91702976-91702995 | MS.gene069985:intron | 45.0% | |
| CTACCAGAAATTGCGGCATT+GGG | - | chr3.2:91702209-91702228 | None:intergenic | 45.0% | |
| CTCTTGAGTAAGTGTGACAG+GGG | - | chr3.2:91703343-91703362 | None:intergenic | 45.0% | |
| GAACTGAGTCTCCTTCCTTA+AGG | - | chr3.2:91703428-91703447 | None:intergenic | 45.0% | |
| GCAACCACCTCTACAGATAT+CGG | + | chr3.2:91703501-91703520 | MS.gene069985:CDS | 45.0% | |
| GCGTCTAACAAGATCAGCTA+CGG | - | chr3.2:91702438-91702457 | None:intergenic | 45.0% | |
| GCTTGACATTGAGACACTTG+TGG | + | chr3.2:91703875-91703894 | MS.gene069985:intron | 45.0% | |
| GGAATCCACCTGATTGTATC+GGG | - | chr3.2:91703465-91703484 | None:intergenic | 45.0% | |
| GTAGCTGATCTTGTTAGACG+CGG | + | chr3.2:91702437-91702456 | MS.gene069985:CDS | 45.0% | |
| TAGACGCGGTCAATTGAGAT+CGG | + | chr3.2:91702451-91702470 | MS.gene069985:CDS | 45.0% | |
| TCCAGGAAAAAAGAACGTCC+TGG | + | chr3.2:91702410-91702429 | MS.gene069985:CDS | 45.0% | |
| TCCTCTTGAGTAAGTGTGAC+AGG | - | chr3.2:91703345-91703364 | None:intergenic | 45.0% | |
| TCTGTAGAGGTGGTTGCAAA+GGG | - | chr3.2:91703498-91703517 | None:intergenic | 45.0% | |
| TGCTCAGCTTGAATACGGAA+AGG | - | chr3.2:91703570-91703589 | None:intergenic | 45.0% | |
| TGTGTGTGTGTGCGTATGTT+TGG | + | chr3.2:91702617-91702636 | MS.gene069985:intron | 45.0% | |
| TTGATCCCGATACAATCAGG+TGG | + | chr3.2:91703457-91703476 | MS.gene069985:CDS | 45.0% | |
| TTGCTAAGGATTTGGGGGTT+TGG | + | chr3.2:91703716-91703735 | MS.gene069985:intron | 45.0% | |
| ! | ATCACTTGTGTTGATGCGTG+TGG | - | chr3.2:91703843-91703862 | None:intergenic | 45.0% |
| ! | CCCACAGTTTTCCTTAAGGA+AGG | + | chr3.2:91703414-91703433 | MS.gene069985:CDS | 45.0% |
| ! | CCTTTTTGCCCCTTTGTCAT+CGG | + | chr3.2:91702033-91702052 | MS.gene069985:CDS | 45.0% |
| ! | GACCCCTAATGAAGAGTGTA+TGG | + | chr3.2:91704033-91704052 | MS.gene069985:intron | 45.0% |
| ! | GCTTTTGCTAACCTTGACCA+AGG | - | chr3.2:91703280-91703299 | None:intergenic | 45.0% |
| ! | GGGCTCTTTCCAAATTTTCC+AGG | + | chr3.2:91702393-91702412 | MS.gene069985:CDS | 45.0% |
| !! | ACTACTGGTACCGATGACAA+AGG | - | chr3.2:91702046-91702065 | None:intergenic | 45.0% |
| !! | CCTGCTGTCTAATTTTGAGG+AGG | - | chr3.2:91704393-91704412 | None:intergenic | 45.0% |
| !! | CTACTGGTACCGATGACAAA+GGG | - | chr3.2:91702045-91702064 | None:intergenic | 45.0% |
| !! | CTGTCTAATTTTGAGGAGGG+GGG | - | chr3.2:91704389-91704408 | None:intergenic | 45.0% |
| !! | GCTGTCTAATTTTGAGGAGG+GGG | - | chr3.2:91704390-91704409 | None:intergenic | 45.0% |
| !! | TACTGGTACCGATGACAAAG+GGG | - | chr3.2:91702044-91702063 | None:intergenic | 45.0% |
| !! | TTAGTGCTGTTTGAGTCGTG+AGG | + | chr3.2:91702727-91702746 | MS.gene069985:intron | 45.0% |
| !!! | ACCAGGACGTTCTTTTTTCC+TGG | - | chr3.2:91702414-91702433 | None:intergenic | 45.0% |
| AAACATCCACCAGGGGAATC+GGG | - | chr3.2:91702782-91702801 | None:intergenic | 50.0% | |
| AAAGTGGGTCACCAGGGATA+AGG | - | chr3.2:91702757-91702776 | None:intergenic | 50.0% | |
| AATCTGCCATGGGAGTCGAA+TGG | - | chr3.2:91704320-91704339 | None:intergenic | 50.0% | |
| ACAAGATCAGCTACGGAACC+AGG | - | chr3.2:91702431-91702450 | None:intergenic | 50.0% | |
| AGTGAAGCCAAACATCCACC+AGG | - | chr3.2:91702791-91702810 | None:intergenic | 50.0% | |
| CAAACATCCACCAGGGGAAT+CGG | - | chr3.2:91702783-91702802 | None:intergenic | 50.0% | |
| CACCTCTACAGATATCGGTG+AGG | + | chr3.2:91703506-91703525 | MS.gene069985:CDS | 50.0% | |
| CAGGGGAATCGGGTAAAAGT+GGG | - | chr3.2:91702772-91702791 | None:intergenic | 50.0% | |
| CATCCCAATGCCGCAATTTC+TGG | + | chr3.2:91702203-91702222 | MS.gene069985:CDS | 50.0% | |
| CCCCCAAATCCTTAGCAACT+AGG | - | chr3.2:91703714-91703733 | None:intergenic | 50.0% | |
| CCCTGTCACACTTACTCAAG+AGG | + | chr3.2:91703341-91703360 | MS.gene069985:CDS | 50.0% | |
| CCGATGACAAAGGGGCAAAA+AGG | - | chr3.2:91702036-91702055 | None:intergenic | 50.0% | |
| CCGTATTCAAGCTGAGCATG+AGG | + | chr3.2:91703572-91703591 | MS.gene069985:CDS | 50.0% | |
| CCTACCAGAAATTGCGGCAT+TGG | - | chr3.2:91702210-91702229 | None:intergenic | 50.0% | |
| CTCACCGATATCTGTAGAGG+TGG | - | chr3.2:91703508-91703527 | None:intergenic | 50.0% | |
| CTGTAGAGGTGGTTGCAAAG+GGG | - | chr3.2:91703497-91703516 | None:intergenic | 50.0% | |
| GACAGCAGGCCGAATAACTT+TGG | + | chr3.2:91704404-91704423 | MS.gene069985:CDS | 50.0% | |
| GGCTTCAAGCTTTCTCTGCA+GGG | - | chr3.2:91703598-91703617 | None:intergenic | 50.0% | |
| GTATCGGGATCAACATCTGG+AGG | - | chr3.2:91703450-91703469 | None:intergenic | 50.0% | |
| GTCCTCACCGATATCTGTAG+AGG | - | chr3.2:91703511-91703530 | None:intergenic | 50.0% | |
| GTGAAGCCAAACATCCACCA+GGG | - | chr3.2:91702790-91702809 | None:intergenic | 50.0% | |
| TAAGTGTGACAGGGGCTAAC+CGG | - | chr3.2:91703335-91703354 | None:intergenic | 50.0% | |
| TGAAGCCAAACATCCACCAG+GGG | - | chr3.2:91702789-91702808 | None:intergenic | 50.0% | |
| ! | CAGAAATTGCGGCATTGGGA+TGG | - | chr3.2:91702205-91702224 | None:intergenic | 50.0% |
| ! | CGGCCTGCTGTCTAATTTTG+AGG | - | chr3.2:91704396-91704415 | None:intergenic | 50.0% |
| ! | GCGTCCCACAGTTTTCCTTA+AGG | + | chr3.2:91703410-91703429 | MS.gene069985:CDS | 50.0% |
| !! | CCAATGCCGCAATTTCTGGT+AGG | + | chr3.2:91702207-91702226 | MS.gene069985:intron | 50.0% |
| !!! | GGATTTGGGGGTTTGGCTTT+TGG | + | chr3.2:91703723-91703742 | MS.gene069985:intron | 50.0% |
| AACAGGCGGTTCACCAGAGA+AGG | + | chr3.2:91703364-91703383 | MS.gene069985:CDS | 55.0% | |
| ACGCACGTGATCTCCTTCTC+TGG | - | chr3.2:91703380-91703399 | None:intergenic | 55.0% | |
| CCAGGGGAATCGGGTAAAAG+TGG | - | chr3.2:91702773-91702792 | None:intergenic | 55.0% | |
| CGGGTAAAAGTGGGTCACCA+GGG | - | chr3.2:91702763-91702782 | None:intergenic | 55.0% | |
| CGTGAGGCTAACCTTATCCC+TGG | + | chr3.2:91702743-91702762 | MS.gene069985:intron | 55.0% | |
| GAGAGACCATTCGACTCCCA+TGG | + | chr3.2:91704311-91704330 | MS.gene069985:CDS | 55.0% | |
| GGAGATCACGTGCGTATCAG+TGG | + | chr3.2:91703385-91703404 | MS.gene069985:CDS | 55.0% | |
| GGGCTTCAAGCTTTCTCTGC+AGG | - | chr3.2:91703599-91703618 | None:intergenic | 55.0% | |
| GTTGCAAAGGGGTGATTCGC+AGG | - | chr3.2:91703486-91703505 | None:intergenic | 55.0% | |
| TCGGGTAAAAGTGGGTCACC+AGG | - | chr3.2:91702764-91702783 | None:intergenic | 55.0% | |
| ! | CGATTCCCCTGGTGGATGTT+TGG | + | chr3.2:91702781-91702800 | MS.gene069985:intron | 55.0% |
| ! | CTTTTACCCGATTCCCCTGG+TGG | + | chr3.2:91702773-91702792 | MS.gene069985:intron | 55.0% |
| !! | CCACTTTTACCCGATTCCCC+TGG | + | chr3.2:91702770-91702789 | MS.gene069985:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91701901 | 91704469 | 91701901 | ID=MS.gene069985 |
| chr3.2 | mRNA | 91701901 | 91704469 | 91701901 | ID=MS.gene069985.t1;Parent=MS.gene069985 |
| chr3.2 | exon | 91701901 | 91701945 | 91701901 | ID=MS.gene069985.t1.exon1;Parent=MS.gene069985.t1 |
| chr3.2 | CDS | 91701901 | 91701945 | 91701901 | ID=cds.MS.gene069985.t1;Parent=MS.gene069985.t1 |
| chr3.2 | exon | 91702033 | 91702224 | 91702033 | ID=MS.gene069985.t1.exon2;Parent=MS.gene069985.t1 |
| chr3.2 | CDS | 91702033 | 91702224 | 91702033 | ID=cds.MS.gene069985.t1;Parent=MS.gene069985.t1 |
| chr3.2 | exon | 91702320 | 91702486 | 91702320 | ID=MS.gene069985.t1.exon3;Parent=MS.gene069985.t1 |
| chr3.2 | CDS | 91702320 | 91702486 | 91702320 | ID=cds.MS.gene069985.t1;Parent=MS.gene069985.t1 |
| chr3.2 | exon | 91703239 | 91703626 | 91703239 | ID=MS.gene069985.t1.exon4;Parent=MS.gene069985.t1 |
| chr3.2 | CDS | 91703239 | 91703626 | 91703239 | ID=cds.MS.gene069985.t1;Parent=MS.gene069985.t1 |
| chr3.2 | exon | 91704260 | 91704469 | 91704260 | ID=MS.gene069985.t1.exon5;Parent=MS.gene069985.t1 |
| chr3.2 | CDS | 91704260 | 91704469 | 91704260 | ID=cds.MS.gene069985.t1;Parent=MS.gene069985.t1 |
| Gene Sequence |
| Protein sequence |
