Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070057.t1 | AES99530.2 | 95.3 | 193 | 5 | 1 | 1 | 193 | 1 | 189 | 9.00E-95 | 356.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070057.t1 | P58684 | 75.4 | 191 | 37 | 2 | 4 | 193 | 11 | 192 | 4.4e-74 | 278.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070057.t1 | G7KBX4 | 95.3 | 193 | 5 | 1 | 1 | 193 | 1 | 189 | 6.5e-95 | 356.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene070057 | 0.804025 | 2.63E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene070057 | 0.80076 | 1.24E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070057.t1 | MTR_5g081900 | 95.337 | 193 | 5 | 1 | 1 | 193 | 1 | 189 | 2.82e-133 | 371 |
| MS.gene070057.t1 | MTR_8g093950 | 85.714 | 42 | 5 | 1 | 33 | 74 | 39 | 79 | 4.60e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070057.t1 | AT2G39960 | 75.000 | 192 | 38 | 2 | 3 | 193 | 10 | 192 | 2.64e-101 | 290 |
| MS.gene070057.t1 | AT4G04200 | 64.948 | 194 | 54 | 4 | 2 | 193 | 9 | 190 | 2.65e-83 | 245 |
Find 41 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGAAAATCTGGGTAATT+TGG | 0.217479 | 5.3:+66304862 | None:intergenic |
| TCGTTTGCAGAAACTGATTT+TGG | 0.230960 | 5.3:+66304809 | None:intergenic |
| CCATATCACTTGCTCTTCTT+TGG | 0.240424 | 5.3:+66304542 | None:intergenic |
| CGTATACAAGTCAGAAAATC+TGG | 0.243351 | 5.3:+66304853 | None:intergenic |
| TCTTGGTTGAGGGCCTCTTC+TGG | 0.244668 | 5.3:-66304604 | MS.gene070057:CDS |
| ATACCACTGGGTAACACTTT+TGG | 0.331383 | 5.3:+66304772 | None:intergenic |
| ATGTGAAATTGAGCAATATT+AGG | 0.331788 | 5.3:-66308076 | MS.gene070057:CDS |
| AAAGGTATGAAAAGGATATA+AGG | 0.331960 | 5.3:+66307956 | None:intergenic |
| ATTCGCTTTCTTCTGTCCTT+TGG | 0.333788 | 5.3:+66308294 | None:intergenic |
| ACACACAGTGAATAAATAAA+AGG | 0.345477 | 5.3:+66307938 | None:intergenic |
| GCAATATTAGGTTGTTGCTT+GGG | 0.414641 | 5.3:-66308064 | MS.gene070057:CDS |
| TTTGGATTGTAGGTTATAAC+GGG | 0.434899 | 5.3:-66308116 | MS.gene070057:intron |
| CAGTCAGAGGATAAGTAAAC+AGG | 0.450105 | 5.3:+66306880 | None:intergenic |
| AATAAATAAAAGGTATGAAA+AGG | 0.451635 | 5.3:+66307948 | None:intergenic |
| TTCCTTTACCAGTACCGGTT+TGG | 0.452853 | 5.3:-66304894 | MS.gene070057:CDS |
| AGCAATATTAGGTTGTTGCT+TGG | 0.460593 | 5.3:-66308065 | MS.gene070057:CDS |
| CAGGGTTCCTTTACCAGTAC+CGG | 0.482927 | 5.3:-66304899 | MS.gene070057:CDS |
| TACCAAACCGGTACTGGTAA+AGG | 0.483907 | 5.3:+66304892 | None:intergenic |
| GATTCCAGGTTCACTAAGGA+TGG | 0.488086 | 5.3:-66304629 | MS.gene070057:intron |
| CGAGAATGTGCTTGATTGAA+TGG | 0.489697 | 5.3:+66308260 | None:intergenic |
| GGAAACTACCAAACCGGTAC+TGG | 0.493140 | 5.3:+66304886 | None:intergenic |
| AAGGATGGAGTCTTGGTTGA+GGG | 0.495543 | 5.3:-66304614 | MS.gene070057:CDS |
| GGTTGAGGGCCTCTTCTGGA+AGG | 0.505626 | 5.3:-66304600 | MS.gene070057:CDS |
| TTGTAGGTTATAACGGGTCG+TGG | 0.511975 | 5.3:-66308110 | MS.gene070057:intron |
| TTTGGATTCCAGGTTCACTA+AGG | 0.518138 | 5.3:-66304633 | MS.gene070057:intron |
| TCTCGATGAGTCTGCTTCTG+AGG | 0.518489 | 5.3:-66308242 | MS.gene070057:intron |
| GTTCACTAAGGATGGAGTCT+TGG | 0.521000 | 5.3:-66304621 | MS.gene070057:CDS |
| AGAAGAAAATCACGATTCTC+CGG | 0.521797 | 5.3:+66307990 | None:intergenic |
| TTTGGAGGAAACTACCAAAC+CGG | 0.521957 | 5.3:+66304880 | None:intergenic |
| TAAGGATGGAGTCTTGGTTG+AGG | 0.539874 | 5.3:-66304615 | MS.gene070057:CDS |
| AGAAAATCTGGGTAATTTGG+AGG | 0.547718 | 5.3:+66304865 | None:intergenic |
| CTTCAACATCCTTCCAGAAG+AGG | 0.549952 | 5.3:+66304591 | None:intergenic |
| GCAGCTGATCATATACACTA+AGG | 0.584453 | 5.3:-66306916 | MS.gene070057:CDS |
| AACGGGTCGTGGGTATGTTG+AGG | 0.596614 | 5.3:-66308099 | MS.gene070057:CDS |
| GTATACAAGTCAGAAAATCT+GGG | 0.601017 | 5.3:+66304854 | None:intergenic |
| TCACAGAAACTTACAGTCAG+AGG | 0.616719 | 5.3:+66306867 | None:intergenic |
| ATTCGAAACATGGCAACCAA+AGG | 0.628041 | 5.3:-66308310 | None:intergenic |
| TGTAGGTTATAACGGGTCGT+GGG | 0.632463 | 5.3:-66308109 | MS.gene070057:intron |
| TACGTATGTAGTCTTCAACT+TGG | 0.636467 | 5.3:-66306943 | MS.gene070057:intron |
| CAGAGGATAAGTAAACAGGA+TGG | 0.686253 | 5.3:+66306884 | None:intergenic |
| TTACCAAAAGTGTTACCCAG+TGG | 0.756276 | 5.3:-66304775 | MS.gene070057:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTAAATATCTAAATTA+AGG | - | chr5.3:66305394-66305413 | MS.gene070057:intron | 10.0% |
| !! | ATTTAACATTTAATTATGTA+TGG | - | chr5.3:66306453-66306472 | MS.gene070057:intron | 10.0% |
| !! | TTTAACATTTAATTATGTAT+GGG | - | chr5.3:66306454-66306473 | MS.gene070057:intron | 10.0% |
| !!! | TTTATTTCTTATTTTTTACA+GGG | - | chr5.3:66307931-66307950 | MS.gene070057:intron | 10.0% |
| !!! | TTTTATTTCTTATTTTTTAC+AGG | - | chr5.3:66307930-66307949 | MS.gene070057:intron | 10.0% |
| !! | CATTTATCTAAAAATGATTT+AGG | - | chr5.3:66307096-66307115 | MS.gene070057:intron | 15.0% |
| !! | TTAAATTGAAATTCAACAAA+AGG | + | chr5.3:66306700-66306719 | None:intergenic | 15.0% |
| !!! | AATAAATAAAAGGTATGAAA+AGG | + | chr5.3:66304903-66304922 | None:intergenic | 15.0% |
| !!! | TTATTTCTATATGTTGAAAA+TGG | + | chr5.3:66306087-66306106 | None:intergenic | 15.0% |
| !! | ATAAGTGGTTTGATAAATTT+CGG | + | chr5.3:66305069-66305088 | None:intergenic | 20.0% |
| !! | CAACAAGATCAAAAAAATTA+GGG | + | chr5.3:66304645-66304664 | None:intergenic | 20.0% |
| !! | GATATTGAAAATGAAATGTT+TGG | - | chr5.3:66305715-66305734 | MS.gene070057:intron | 20.0% |
| !! | TCAACAAGATCAAAAAAATT+AGG | + | chr5.3:66304646-66304665 | None:intergenic | 20.0% |
| !! | TGTTGTGAAATAACAATTAT+GGG | - | chr5.3:66305267-66305286 | MS.gene070057:intron | 20.0% |
| !! | TTTCAATAGTGATTTAAAGA+GGG | - | chr5.3:66306955-66306974 | MS.gene070057:intron | 20.0% |
| !! | TTTCATATGAAAATGAAAGT+TGG | + | chr5.3:66306860-66306879 | None:intergenic | 20.0% |
| !!! | AATAGCAATTTGTTCAAATT+CGG | + | chr5.3:66305316-66305335 | None:intergenic | 20.0% |
| !!! | ATAAAGTACTTTAGTAGTTT+AGG | + | chr5.3:66306893-66306912 | None:intergenic | 20.0% |
| !!! | ATTTGATGATTTATGTGAAA+AGG | - | chr5.3:66305808-66305827 | MS.gene070057:intron | 20.0% |
| !!! | GAGTTTTTTGTTTGTTAATT+GGG | - | chr5.3:66304702-66304721 | MS.gene070057:intron | 20.0% |
| !!! | TAAACTACTAAAGTACTTTA+TGG | - | chr5.3:66306892-66306911 | MS.gene070057:CDS | 20.0% |
| !!! | TGAGTTTTTTGTTTGTTAAT+TGG | - | chr5.3:66304701-66304720 | MS.gene070057:intron | 20.0% |
| !!! | TGATTTTTTCAAATTACTAG+CGG | - | chr5.3:66305657-66305676 | MS.gene070057:intron | 20.0% |
| !!! | TGCTTTTGATTTTATTCTTT+TGG | - | chr5.3:66307152-66307171 | MS.gene070057:intron | 20.0% |
| !!! | TTTGATGATTTATGTGAAAA+GGG | - | chr5.3:66305809-66305828 | MS.gene070057:intron | 20.0% |
| !!! | TTTTCAATAGTGATTTAAAG+AGG | - | chr5.3:66306954-66306973 | MS.gene070057:intron | 20.0% |
| ! | AACATCCAAATTAAGATTCA+AGG | + | chr5.3:66306927-66306946 | None:intergenic | 25.0% |
| ! | ACACACAGTGAATAAATAAA+AGG | + | chr5.3:66304913-66304932 | None:intergenic | 25.0% |
| ! | AGTTGGAATAACATAGATAA+AGG | + | chr5.3:66306843-66306862 | None:intergenic | 25.0% |
| ! | ATAAGAAATAAAAGCCAAGT+TGG | + | chr5.3:66307923-66307942 | None:intergenic | 25.0% |
| ! | ATGTGAAATTGAGCAATATT+AGG | - | chr5.3:66304772-66304791 | MS.gene070057:intron | 25.0% |
| ! | ATTTATGTGAAAAGGGATAT+GGG | - | chr5.3:66305816-66305835 | MS.gene070057:intron | 25.0% |
| ! | CAAACTATTTATGCAGATTA+TGG | - | chr5.3:66306778-66306797 | MS.gene070057:intron | 25.0% |
| ! | CAGGTACTAATTTAAGAAAA+TGG | - | chr5.3:66305118-66305137 | MS.gene070057:intron | 25.0% |
| ! | CATAATCTGCATAAATAGTT+TGG | + | chr5.3:66306780-66306799 | None:intergenic | 25.0% |
| ! | GTGTTGTGAAATAACAATTA+TGG | - | chr5.3:66305266-66305285 | MS.gene070057:intron | 25.0% |
| ! | TGTATTGCAAATGAAATATC+TGG | - | chr5.3:66305526-66305545 | MS.gene070057:intron | 25.0% |
| ! | TTCAATACTCACTTTCTTAT+TGG | - | chr5.3:66306506-66306525 | MS.gene070057:intron | 25.0% |
| ! | TTTGAAAAAATCACACAGTT+CGG | + | chr5.3:66305650-66305669 | None:intergenic | 25.0% |
| !! | AAAGGTATGAAAAGGATATA+AGG | + | chr5.3:66304895-66304914 | None:intergenic | 25.0% |
| !! | TGTGTGAACGATTTTATAAA+GGG | + | chr5.3:66308120-66308139 | None:intergenic | 25.0% |
| !! | TGTTAATTGGGATTGAATTT+TGG | - | chr5.3:66304714-66304733 | MS.gene070057:intron | 25.0% |
| !! | TTAAAAGTTGTTGAGGTTTT+GGG | - | chr5.3:66305777-66305796 | MS.gene070057:intron | 25.0% |
| !! | TTTAAAAGTTGTTGAGGTTT+TGG | - | chr5.3:66305776-66305795 | MS.gene070057:intron | 25.0% |
| !! | TTTTGGATTGTAGGTTATAA+CGG | - | chr5.3:66304731-66304750 | MS.gene070057:intron | 25.0% |
| !!! | AGTTGTTTTAAAAGTTGTTG+AGG | - | chr5.3:66305770-66305789 | MS.gene070057:intron | 25.0% |
| !!! | TTAATACTGATTCATATGTC+TGG | + | chr5.3:66308147-66308166 | None:intergenic | 25.0% |
| AAAAAATTAGGGTTTAGCGA+AGG | + | chr5.3:66304634-66304653 | None:intergenic | 30.0% | |
| AATCTCTAACAGACACAAAA+TGG | + | chr5.3:66306148-66306167 | None:intergenic | 30.0% | |
| AGACAAATAATGCTAATGTC+TGG | - | chr5.3:66306229-66306248 | MS.gene070057:intron | 30.0% | |
| AGTTGCCTTGAATCTTAATT+TGG | - | chr5.3:66306919-66306938 | MS.gene070057:CDS | 30.0% | |
| CTTATTGGATGAAATCAATG+TGG | - | chr5.3:66306521-66306540 | MS.gene070057:intron | 30.0% | |
| GATTTATGTGAAAAGGGATA+TGG | - | chr5.3:66305815-66305834 | MS.gene070057:intron | 30.0% | |
| GTATACAAGTCAGAAAATCT+GGG | + | chr5.3:66307997-66308016 | None:intergenic | 30.0% | |
| TGGGAATTGTTCAAATTGAA+TGG | - | chr5.3:66305577-66305596 | MS.gene070057:intron | 30.0% | |
| TGTAAGTTTCTGTGAACTTA+GGG | - | chr5.3:66305989-66306008 | MS.gene070057:intron | 30.0% | |
| TTAGAAATAGAGTGTGATGT+GGG | - | chr5.3:66305558-66305577 | MS.gene070057:intron | 30.0% | |
| TTTAGAAATAGAGTGTGATG+TGG | - | chr5.3:66305557-66305576 | MS.gene070057:intron | 30.0% | |
| TTTGGATTGTAGGTTATAAC+GGG | - | chr5.3:66304732-66304751 | MS.gene070057:intron | 30.0% | |
| ! | AATCCAATTTTTCTCACACT+CGG | + | chr5.3:66304992-66305011 | None:intergenic | 30.0% |
| ! | ACGATTTTATAAAGGGATGA+AGG | + | chr5.3:66308113-66308132 | None:intergenic | 30.0% |
| ! | CGATTTTATAAAGGGATGAA+GGG | + | chr5.3:66308112-66308131 | None:intergenic | 30.0% |
| ! | CTGTGTGAACGATTTTATAA+AGG | + | chr5.3:66308121-66308140 | None:intergenic | 30.0% |
| ! | GTTTTACAAGAAGAAGTTTC+CGG | - | chr5.3:66304839-66304858 | MS.gene070057:CDS | 30.0% |
| !! | AATGTCTGGTTAGTTTAGTT+AGG | - | chr5.3:66306243-66306262 | MS.gene070057:intron | 30.0% |
| !! | GTTTTTGTTATGGTTTGGAT+GGG | - | chr5.3:66305362-66305381 | MS.gene070057:intron | 30.0% |
| !! | TGTTTTTGTTATGGTTTGGA+TGG | - | chr5.3:66305361-66305380 | MS.gene070057:intron | 30.0% |
| !! | TTTAGGTTGAAAATTTGACC+AGG | - | chr5.3:66306807-66306826 | MS.gene070057:intron | 30.0% |
| !! | TTTTTGTTATGGTTTGGATG+GGG | - | chr5.3:66305363-66305382 | MS.gene070057:intron | 30.0% |
| !!! | GCATCAATCTGTTTTTTGTT+TGG | - | chr5.3:66308197-66308216 | MS.gene070057:intron | 30.0% |
| !!! | GTACTGTTTTTGTTATGGTT+TGG | - | chr5.3:66305357-66305376 | MS.gene070057:intron | 30.0% |
| !!! | TGACAGTACTGTTTTTGTTA+TGG | - | chr5.3:66305352-66305371 | MS.gene070057:intron | 30.0% |
| ACCAGATTATATTTACCCAG+AGG | + | chr5.3:66306653-66306672 | None:intergenic | 35.0% | |
| AGAAAATCTGGGTAATTTGG+AGG | + | chr5.3:66307986-66308005 | None:intergenic | 35.0% | |
| AGAAGAAAATCACGATTCTC+CGG | + | chr5.3:66304861-66304880 | None:intergenic | 35.0% | |
| ATATCTATGAAGCACGAAGA+CGG | + | chr5.3:66305700-66305719 | None:intergenic | 35.0% | |
| ATGTAATGATGCAAACTGTG+TGG | - | chr5.3:66307008-66307027 | MS.gene070057:intron | 35.0% | |
| ATTGAACCAGTGCATAAAAC+AGG | + | chr5.3:66306039-66306058 | None:intergenic | 35.0% | |
| CAAATAGCTGAAACTAATCG+TGG | - | chr5.3:66306392-66306411 | MS.gene070057:intron | 35.0% | |
| CGTATACAAGTCAGAAAATC+TGG | + | chr5.3:66307998-66308017 | None:intergenic | 35.0% | |
| CTAACATCCACTCTCTTATT+GGG | + | chr5.3:66306603-66306622 | None:intergenic | 35.0% | |
| CTGTAAGTTTCTGTGAACTT+AGG | - | chr5.3:66305988-66306007 | MS.gene070057:intron | 35.0% | |
| GGAAAAAGAGAAATACCACT+GGG | + | chr5.3:66308091-66308110 | None:intergenic | 35.0% | |
| GGCAAATGAATGAATGCTAT+GGG | - | chr5.3:66306475-66306494 | MS.gene070057:intron | 35.0% | |
| GTCAGAAAATCTGGGTAATT+TGG | + | chr5.3:66307989-66308008 | None:intergenic | 35.0% | |
| GTGTAGGCGTTCAAATTAAA+AGG | - | chr5.3:66305497-66305516 | MS.gene070057:intron | 35.0% | |
| GTGTGTGTGTTCAAATTGAA+AGG | - | chr5.3:66305469-66305488 | MS.gene070057:intron | 35.0% | |
| TAAAACAGGGGGCTATTTAA+AGG | + | chr5.3:66306025-66306044 | None:intergenic | 35.0% | |
| TACGTATGTAGTCTTCAACT+TGG | - | chr5.3:66305905-66305924 | MS.gene070057:intron | 35.0% | |
| TCCTCTGGGTAAATATAATC+TGG | - | chr5.3:66306649-66306668 | MS.gene070057:intron | 35.0% | |
| TCTAACATCCACTCTCTTAT+TGG | + | chr5.3:66306604-66306623 | None:intergenic | 35.0% | |
| TGCGTATTGTGAAACAATAG+TGG | + | chr5.3:66305228-66305247 | None:intergenic | 35.0% | |
| TTGAACCAGTGCATAAAACA+GGG | + | chr5.3:66306038-66306057 | None:intergenic | 35.0% | |
| TTGCCAAAGAGAGGTAATAA+TGG | - | chr5.3:66305030-66305049 | MS.gene070057:intron | 35.0% | |
| TTTCAAATTACTAGCGGTGT+TGG | - | chr5.3:66305663-66305682 | MS.gene070057:intron | 35.0% | |
| TTTCATCCAATAAGCCAAGT+TGG | + | chr5.3:66307219-66307238 | None:intergenic | 35.0% | |
| ! | AAAAAAGTGTAGCAATCCTC+TGG | - | chr5.3:66306634-66306653 | MS.gene070057:intron | 35.0% |
| ! | AAAAAGTGTAGCAATCCTCT+GGG | - | chr5.3:66306635-66306654 | MS.gene070057:intron | 35.0% |
| ! | AAATTGAAAGGAGTGTGTGT+AGG | - | chr5.3:66305481-66305500 | MS.gene070057:intron | 35.0% |
| ! | ACACTTTTGGTAAGATGTAC+TGG | + | chr5.3:66308066-66308085 | None:intergenic | 35.0% |
| ! | ACATCCATGGGTTAAAAACA+AGG | - | chr5.3:66306751-66306770 | MS.gene070057:intron | 35.0% |
| ! | AGCAATATTAGGTTGTTGCT+TGG | - | chr5.3:66304783-66304802 | MS.gene070057:CDS | 35.0% |
| ! | AGGATGATTTTTCACATCCA+TGG | - | chr5.3:66306738-66306757 | MS.gene070057:intron | 35.0% |
| ! | CAATTTGTTCAAATTCGGCT+AGG | + | chr5.3:66305311-66305330 | None:intergenic | 35.0% |
| ! | CTCATGTTTTGTCTTTGTAG+TGG | - | chr5.3:66307047-66307066 | MS.gene070057:intron | 35.0% |
| ! | GAGAACTCTTGTTTGTATGT+AGG | - | chr5.3:66305429-66305448 | MS.gene070057:intron | 35.0% |
| ! | GCAAGTTTCTTTTGCTCTTT+CGG | - | chr5.3:66306204-66306223 | MS.gene070057:intron | 35.0% |
| ! | GCAATATTAGGTTGTTGCTT+GGG | - | chr5.3:66304784-66304803 | MS.gene070057:CDS | 35.0% |
| ! | GGATGATTTTTCACATCCAT+GGG | - | chr5.3:66306739-66306758 | MS.gene070057:intron | 35.0% |
| ! | GGGATTGAATTTTGGATTGT+AGG | - | chr5.3:66304722-66304741 | MS.gene070057:intron | 35.0% |
| !! | AAGTTGATAAAAGTTGCAGC+AGG | - | chr5.3:66306718-66306737 | MS.gene070057:intron | 35.0% |
| !! | TCGTTTGCAGAAACTGATTT+TGG | + | chr5.3:66308042-66308061 | None:intergenic | 35.0% |
| !!! | CTGTTTTTTGTTTGGATTCC+AGG | - | chr5.3:66308205-66308224 | MS.gene070057:intron | 35.0% |
| !!! | TAATGCGTGCACTGATTTTT+TGG | - | chr5.3:66308164-66308183 | MS.gene070057:intron | 35.0% |
| ATTCGCTTTCTTCTGTCCTT+TGG | + | chr5.3:66304557-66304576 | None:intergenic | 40.0% | |
| CAATGTGAGTCCTACACTTT+GGG | + | chr5.3:66306574-66306593 | None:intergenic | 40.0% | |
| CAGAGGATAAGTAAACAGGA+TGG | + | chr5.3:66305967-66305986 | None:intergenic | 40.0% | |
| CAGTCAGAGGATAAGTAAAC+AGG | + | chr5.3:66305971-66305990 | None:intergenic | 40.0% | |
| CGAGAATGTGCTTGATTGAA+TGG | + | chr5.3:66304591-66304610 | None:intergenic | 40.0% | |
| CGTTTATTGTTGCCAAAGAG+AGG | - | chr5.3:66305021-66305040 | MS.gene070057:intron | 40.0% | |
| GATTACACCCAATAAGAGAG+TGG | - | chr5.3:66306593-66306612 | MS.gene070057:intron | 40.0% | |
| GCACCATTATTACCTCTCTT+TGG | + | chr5.3:66305036-66305055 | None:intergenic | 40.0% | |
| GCAGATTATGGCATGTCTTT+AGG | - | chr5.3:66306790-66306809 | MS.gene070057:intron | 40.0% | |
| GCAGCTGATCATATACACTA+AGG | - | chr5.3:66305932-66305951 | MS.gene070057:intron | 40.0% | |
| GGGAAAAAGAGAAATACCAC+TGG | + | chr5.3:66308092-66308111 | None:intergenic | 40.0% | |
| GGGCAAATGAATGAATGCTA+TGG | - | chr5.3:66306474-66306493 | MS.gene070057:intron | 40.0% | |
| GTTAGGACTGTGCTATAGTA+AGG | - | chr5.3:66306260-66306279 | MS.gene070057:intron | 40.0% | |
| TCAATGTGAGTCCTACACTT+TGG | + | chr5.3:66306575-66306594 | None:intergenic | 40.0% | |
| TCACAGAAACTTACAGTCAG+AGG | + | chr5.3:66305984-66306003 | None:intergenic | 40.0% | |
| TCGGTGTAATTATACGTGCT+GGG | + | chr5.3:66305631-66305650 | None:intergenic | 40.0% | |
| TGAACCAGTGCATAAAACAG+GGG | + | chr5.3:66306037-66306056 | None:intergenic | 40.0% | |
| TGGGTTTCACATAAAGTGGT+AGG | + | chr5.3:66306549-66306568 | None:intergenic | 40.0% | |
| TGTGTTCCAACTTGGCTTAT+TGG | - | chr5.3:66307210-66307229 | MS.gene070057:intron | 40.0% | |
| TTGCCGAGTGTGAGAAAAAT+TGG | - | chr5.3:66304986-66305005 | MS.gene070057:intron | 40.0% | |
| TTTGGAGGAAACTACCAAAC+CGG | + | chr5.3:66307971-66307990 | None:intergenic | 40.0% | |
| TTTGGATTCCAGGTTCACTA+AGG | - | chr5.3:66308215-66308234 | MS.gene070057:intron | 40.0% | |
| ! | ACAGCTTTGATCAGAAGTGT+CGG | - | chr5.3:66305188-66305207 | MS.gene070057:intron | 40.0% |
| ! | ATACCACTGGGTAACACTTT+TGG | + | chr5.3:66308079-66308098 | None:intergenic | 40.0% |
| ! | ATGGTTTGGATGGGGATAAT+TGG | - | chr5.3:66305371-66305390 | MS.gene070057:intron | 40.0% |
| ! | GAGTATTGTGTGTTCCAACT+TGG | - | chr5.3:66307202-66307221 | MS.gene070057:intron | 40.0% |
| ! | GGAATGGGTTTCACATAAAG+TGG | + | chr5.3:66306553-66306572 | None:intergenic | 40.0% |
| ! | TTCGGTGTAATTATACGTGC+TGG | + | chr5.3:66305632-66305651 | None:intergenic | 40.0% |
| ! | TTTTGGATCTGCGCTTTCTA+TGG | + | chr5.3:66308025-66308044 | None:intergenic | 40.0% |
| !! | TTACCAAAAGTGTTACCCAG+TGG | - | chr5.3:66308073-66308092 | MS.gene070057:CDS | 40.0% |
| !!! | GTTGCCTTGTTTTTAACCCA+TGG | + | chr5.3:66306758-66306777 | None:intergenic | 40.0% |
| !!! | TTTTGAAGTACAGTGCGATG+TGG | - | chr5.3:66305746-66305765 | MS.gene070057:intron | 40.0% |
| AAGGATGGAGTCTTGGTTGA+GGG | - | chr5.3:66308234-66308253 | MS.gene070057:intron | 45.0% | |
| ACGACACTACATGTTGATGC+AGG | - | chr5.3:66305099-66305118 | MS.gene070057:intron | 45.0% | |
| CGGTGTAATTATACGTGCTG+GGG | + | chr5.3:66305630-66305649 | None:intergenic | 45.0% | |
| CTACATACGTACGAGAGTCA+AGG | + | chr5.3:66305896-66305915 | None:intergenic | 45.0% | |
| CTTCAACATCCTTCCAGAAG+AGG | + | chr5.3:66308260-66308279 | None:intergenic | 45.0% | |
| GAAACCCATTCCCAAAGTGT+AGG | - | chr5.3:66306561-66306580 | MS.gene070057:intron | 45.0% | |
| GAACCAGTGCATAAAACAGG+GGG | + | chr5.3:66306036-66306055 | None:intergenic | 45.0% | |
| GATAAAGGCAAGCACTATCC+TGG | + | chr5.3:66306828-66306847 | None:intergenic | 45.0% | |
| GATTCCAGGTTCACTAAGGA+TGG | - | chr5.3:66308219-66308238 | MS.gene070057:intron | 45.0% | |
| GTTCACTAAGGATGGAGTCT+TGG | - | chr5.3:66308227-66308246 | MS.gene070057:intron | 45.0% | |
| TAAGGATGGAGTCTTGGTTG+AGG | - | chr5.3:66308233-66308252 | MS.gene070057:intron | 45.0% | |
| TTTGTCTTTGTAGTGGCTGC+TGG | - | chr5.3:66307054-66307073 | MS.gene070057:intron | 45.0% | |
| ! | ACGAAGCACTCATGCTAAAC+TGG | - | chr5.3:66306354-66306373 | MS.gene070057:intron | 45.0% |
| ! | CGAAGCACTCATGCTAAACT+GGG | - | chr5.3:66306355-66306374 | MS.gene070057:intron | 45.0% |
| ! | GAGTCCTACACTTTGGGAAT+GGG | + | chr5.3:66306568-66306587 | None:intergenic | 45.0% |
| ! | TGAGTCCTACACTTTGGGAA+TGG | + | chr5.3:66306569-66306588 | None:intergenic | 45.0% |
| !! | TACCAAACCGGTACTGGTAA+AGG | + | chr5.3:66307959-66307978 | None:intergenic | 45.0% |
| !! | TGTAGGTTATAACGGGTCGT+GGG | - | chr5.3:66304739-66304758 | MS.gene070057:intron | 45.0% |
| !! | TTCCTTTACCAGTACCGGTT+TGG | - | chr5.3:66307954-66307973 | MS.gene070057:CDS | 45.0% |
| !! | TTGTAGGTTATAACGGGTCG+TGG | - | chr5.3:66304738-66304757 | MS.gene070057:intron | 45.0% |
| ATGAAGCACGAAGACGGACA+CGG | + | chr5.3:66305694-66305713 | None:intergenic | 50.0% | |
| CAGGGTTCCTTTACCAGTAC+CGG | - | chr5.3:66307949-66307968 | MS.gene070057:CDS | 50.0% | |
| GACTCCATCCTTAGTGAACC+TGG | + | chr5.3:66308226-66308245 | None:intergenic | 50.0% | |
| GGAAACTACCAAACCGGTAC+TGG | + | chr5.3:66307965-66307984 | None:intergenic | 50.0% | |
| TCAACATGTAGTGTCGTCGC+TGG | + | chr5.3:66305096-66305115 | None:intergenic | 50.0% | |
| TCTCGATGAGTCTGCTTCTG+AGG | - | chr5.3:66304606-66304625 | MS.gene070057:CDS | 50.0% | |
| ! | TAGCCCCCTGTTTTATGCAC+TGG | - | chr5.3:66306030-66306049 | MS.gene070057:intron | 50.0% |
| AACGGGTCGTGGGTATGTTG+AGG | - | chr5.3:66304749-66304768 | MS.gene070057:intron | 55.0% | |
| TATACGTGCTGGGGTCGTGT+CGG | + | chr5.3:66305621-66305640 | None:intergenic | 55.0% | |
| TCTTGGTTGAGGGCCTCTTC+TGG | - | chr5.3:66308244-66308263 | MS.gene070057:CDS | 55.0% | |
| !! | GTCGTCGCTGGCTTCATAAG+TGG | + | chr5.3:66305084-66305103 | None:intergenic | 55.0% |
| GGTTGAGGGCCTCTTCTGGA+AGG | - | chr5.3:66308248-66308267 | MS.gene070057:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66304547 | 66308323 | 66304547 | ID=MS.gene070057 |
| chr5.3 | mRNA | 66304547 | 66308323 | 66304547 | ID=MS.gene070057.t1;Parent=MS.gene070057 |
| chr5.3 | exon | 66308243 | 66308323 | 66308243 | ID=MS.gene070057.t1.exon1;Parent=MS.gene070057.t1 |
| chr5.3 | CDS | 66308243 | 66308323 | 66308243 | ID=cds.MS.gene070057.t1;Parent=MS.gene070057.t1 |
| chr5.3 | exon | 66307940 | 66308126 | 66307940 | ID=MS.gene070057.t1.exon2;Parent=MS.gene070057.t1 |
| chr5.3 | CDS | 66307940 | 66308126 | 66307940 | ID=cds.MS.gene070057.t1;Parent=MS.gene070057.t1 |
| chr5.3 | exon | 66306881 | 66306954 | 66306881 | ID=MS.gene070057.t1.exon3;Parent=MS.gene070057.t1 |
| chr5.3 | CDS | 66306881 | 66306954 | 66306881 | ID=cds.MS.gene070057.t1;Parent=MS.gene070057.t1 |
| chr5.3 | exon | 66304776 | 66304918 | 66304776 | ID=MS.gene070057.t1.exon4;Parent=MS.gene070057.t1 |
| chr5.3 | CDS | 66304776 | 66304918 | 66304776 | ID=cds.MS.gene070057.t1;Parent=MS.gene070057.t1 |
| chr5.3 | exon | 66304547 | 66304643 | 66304547 | ID=MS.gene070057.t1.exon5;Parent=MS.gene070057.t1 |
| chr5.3 | CDS | 66304547 | 66304643 | 66304547 | ID=cds.MS.gene070057.t1;Parent=MS.gene070057.t1 |
| Gene Sequence |
| Protein sequence |
