Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070106.t1 | XP_013453646.1 | 99.2 | 725 | 5 | 1 | 8 | 732 | 1 | 724 | 0.00E+00 | 1463 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070106.t1 | F4JSE7 | 77.7 | 723 | 154 | 5 | 10 | 731 | 2 | 718 | 0.0e+00 | 1146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070106.t1 | A0A072UDZ9 | 99.2 | 725 | 5 | 1 | 8 | 732 | 1 | 724 | 0.0e+00 | 1463.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055304 | MS.gene070106 | 0.805817 | 1.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070106.t1 | MTR_5g027200 | 99.172 | 725 | 5 | 1 | 8 | 732 | 1 | 724 | 0.0 | 1498 |
| MS.gene070106.t1 | MTR_5g027200 | 99.034 | 725 | 5 | 2 | 8 | 732 | 1 | 723 | 0.0 | 1491 |
| MS.gene070106.t1 | MTR_1g094890 | 32.800 | 750 | 426 | 13 | 15 | 724 | 2 | 713 | 1.56e-124 | 388 |
| MS.gene070106.t1 | MTR_2g094620 | 32.507 | 766 | 402 | 19 | 15 | 724 | 17 | 723 | 1.56e-114 | 362 |
| MS.gene070106.t1 | MTR_2g449780 | 31.258 | 739 | 452 | 20 | 14 | 724 | 26 | 736 | 4.11e-102 | 330 |
| MS.gene070106.t1 | MTR_4g116840 | 29.364 | 739 | 461 | 18 | 16 | 724 | 26 | 733 | 6.33e-97 | 316 |
| MS.gene070106.t1 | MTR_3g105780 | 42.918 | 233 | 123 | 4 | 501 | 723 | 29 | 261 | 1.13e-60 | 206 |
| MS.gene070106.t1 | MTR_2g094620 | 29.654 | 462 | 242 | 12 | 15 | 471 | 17 | 400 | 1.18e-49 | 185 |
| MS.gene070106.t1 | MTR_2g094620 | 42.484 | 153 | 85 | 2 | 518 | 667 | 514 | 666 | 1.58e-32 | 134 |
| MS.gene070106.t1 | MTR_2g094620 | 29.654 | 462 | 242 | 12 | 15 | 471 | 17 | 400 | 1.35e-49 | 186 |
| MS.gene070106.t1 | MTR_2g094620 | 37.143 | 210 | 95 | 3 | 518 | 724 | 514 | 689 | 1.19e-35 | 144 |
| MS.gene070106.t1 | MTR_4g067360 | 36.735 | 245 | 147 | 3 | 487 | 723 | 7 | 251 | 1.02e-47 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070106.t1 | AT4G19040 | 79.391 | 723 | 142 | 5 | 10 | 731 | 2 | 718 | 0.0 | 1199 |
| MS.gene070106.t1 | AT4G19040 | 79.063 | 726 | 144 | 5 | 10 | 731 | 2 | 723 | 0.0 | 1198 |
| MS.gene070106.t1 | AT4G19040 | 78.650 | 726 | 144 | 6 | 10 | 731 | 2 | 720 | 0.0 | 1186 |
| MS.gene070106.t1 | AT5G45560 | 78.897 | 725 | 143 | 6 | 10 | 731 | 2 | 719 | 0.0 | 1179 |
| MS.gene070106.t1 | AT5G45560 | 77.673 | 636 | 133 | 5 | 99 | 731 | 1 | 630 | 0.0 | 1011 |
| MS.gene070106.t1 | AT2G28320 | 33.770 | 764 | 418 | 20 | 10 | 724 | 9 | 733 | 2.87e-122 | 383 |
| MS.gene070106.t1 | AT3G54800 | 32.005 | 753 | 436 | 17 | 15 | 724 | 11 | 730 | 5.07e-117 | 369 |
| MS.gene070106.t1 | AT3G54800 | 32.005 | 753 | 436 | 17 | 15 | 724 | 11 | 730 | 5.07e-117 | 369 |
| MS.gene070106.t1 | AT5G35180 | 30.295 | 746 | 454 | 20 | 14 | 724 | 60 | 774 | 1.47e-99 | 324 |
| MS.gene070106.t1 | AT5G35180 | 30.295 | 746 | 454 | 20 | 14 | 724 | 60 | 774 | 1.72e-99 | 324 |
| MS.gene070106.t1 | AT5G35180 | 30.267 | 750 | 453 | 21 | 14 | 724 | 60 | 778 | 1.23e-97 | 319 |
| MS.gene070106.t1 | AT5G35180 | 28.995 | 776 | 458 | 22 | 14 | 724 | 60 | 807 | 5.45e-91 | 302 |
| MS.gene070106.t1 | AT5G10750 | 43.333 | 240 | 126 | 4 | 494 | 723 | 32 | 271 | 4.21e-64 | 216 |
| MS.gene070106.t1 | AT1G06050 | 39.744 | 234 | 132 | 3 | 509 | 733 | 30 | 263 | 1.75e-52 | 184 |
| MS.gene070106.t1 | AT5G24990 | 39.827 | 231 | 131 | 6 | 501 | 723 | 36 | 266 | 6.97e-52 | 182 |
| MS.gene070106.t1 | AT5G25010 | 37.826 | 230 | 136 | 5 | 501 | 723 | 36 | 265 | 1.28e-49 | 176 |
| MS.gene070106.t1 | AT5G25020 | 34.934 | 229 | 115 | 5 | 501 | 723 | 37 | 237 | 4.03e-38 | 143 |
| MS.gene070106.t1 | AT5G35180 | 24.729 | 554 | 357 | 17 | 14 | 536 | 60 | 584 | 1.85e-35 | 142 |
Find 160 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGTTGCTAATGGAGTTT+TGG | 0.160345 | 5.4:+17963692 | MS.gene070106:CDS |
| TCAATTAGCAGTGTCTTAAT+TGG | 0.225899 | 5.4:-17952092 | None:intergenic |
| TGTTGCGGTTGACTGGTTTA+AGG | 0.232068 | 5.4:+17959635 | MS.gene070106:CDS |
| ATCTTTGTTATGTACGTTAC+TGG | 0.239811 | 5.4:+17957279 | MS.gene070106:CDS |
| TGCAGGAAACCATACCATTT+TGG | 0.248440 | 5.4:-17955226 | None:intergenic |
| GATGGATCTGGATCCAGTTT+TGG | 0.264262 | 5.4:-17964619 | None:intergenic |
| CTGTAGGTTGATGTTGATAT+TGG | 0.276327 | 5.4:+17963663 | MS.gene070106:intron |
| TGGGAGCACTCCTTGTTTAT+TGG | 0.279732 | 5.4:+17963473 | MS.gene070106:CDS |
| ACATCCAAGAGGCCCTAATT+TGG | 0.282417 | 5.4:+17954184 | MS.gene070106:CDS |
| CATCACTCTCAAGACCAATT+TGG | 0.285981 | 5.4:-17959189 | None:intergenic |
| CTCCATTATCATCAATGTTC+AGG | 0.291607 | 5.4:+17962046 | MS.gene070106:CDS |
| GGTTCTTCTACTGTTGCTAA+TGG | 0.293568 | 5.4:+17963684 | MS.gene070106:CDS |
| GGGAGCACTCCTTGTTTATT+GGG | 0.294412 | 5.4:+17963474 | MS.gene070106:CDS |
| GTCCACAACCAGGGTGTGTT+CGG | 0.304031 | 5.4:+17957637 | MS.gene070106:CDS |
| GTGACCAAGGAGTTAGTTCC+TGG | 0.306389 | 5.4:+17962187 | MS.gene070106:CDS |
| TCACATGAGGTACTTCGTTT+TGG | 0.309120 | 5.4:+17951701 | MS.gene070106:CDS |
| GAGTTACCCGAGAGGCTTAT+TGG | 0.315181 | 5.4:+17964553 | MS.gene070106:CDS |
| CTCTTGCAACGCTTTGTTGA+TGG | 0.315978 | 5.4:+17962214 | MS.gene070106:CDS |
| GTGATAATGCTCGGGATTGC+TGG | 0.325042 | 5.4:+17959436 | MS.gene070106:CDS |
| CAGATGGGATTGCAGTTTCC+AGG | 0.337351 | 5.4:+17956848 | MS.gene070106:intron |
| ATGCAGGTTGCGTCTGAAAA+AGG | 0.339972 | 5.4:+17962017 | MS.gene070106:intron |
| TACAACACTGGTGGTTGATA+TGG | 0.342426 | 5.4:+17963734 | MS.gene070106:CDS |
| CAGCCACACTATTTAACATT+TGG | 0.347689 | 5.4:-17958604 | None:intergenic |
| ATCGAGAGAAGTAGAGTTAA+CGG | 0.349342 | 5.4:-17958973 | None:intergenic |
| CCTTCCAAATTAGGGCCTCT+TGG | 0.371002 | 5.4:-17954188 | None:intergenic |
| ATTAAGACACTGCTAATTGA+TGG | 0.372917 | 5.4:+17952095 | MS.gene070106:CDS |
| ATATTTCAGGCATTCCAAAT+TGG | 0.383608 | 5.4:+17959175 | MS.gene070106:intron |
| CCTCAACTAACCTACCTTCC+TGG | 0.388315 | 5.4:-17956866 | None:intergenic |
| TCTCTACAGGTTTACGTGAA+TGG | 0.391173 | 5.4:+17958844 | MS.gene070106:intron |
| AAGAAAACCGCAAGATAATC+AGG | 0.391974 | 5.4:+17951749 | MS.gene070106:CDS |
| AAGCGTTGCAAGAGTGTTCC+AGG | 0.392075 | 5.4:-17962205 | None:intergenic |
| GCAGATTGATCTGAAGGGTT+GGG | 0.394712 | 5.4:+17958541 | MS.gene070106:CDS |
| GATCCCCAGGTTTAGTGCTC+AGG | 0.397692 | 5.4:+17954953 | MS.gene070106:intron |
| TGAGCTTTAACCTGCTGTTT+CGG | 0.401153 | 5.4:-17962249 | None:intergenic |
| TGCCTGAACATTGATGATAA+TGG | 0.417550 | 5.4:-17962048 | None:intergenic |
| AACTGTAGAGTGGAGGATAG+AGG | 0.417822 | 5.4:+17952119 | MS.gene070106:CDS |
| TGGATCTTGTTGCGGTTGAC+TGG | 0.418651 | 5.4:+17959628 | MS.gene070106:CDS |
| AGAAAAGAACCATCGGGTTA+TGG | 0.420037 | 5.4:+17954024 | MS.gene070106:CDS |
| CGAAATGATGATGGAAGTTA+TGG | 0.424771 | 5.4:+17957305 | MS.gene070106:CDS |
| CCACACTATTTAACATTTGG+CGG | 0.425322 | 5.4:-17958601 | None:intergenic |
| TCCTGCAGGAAAACATCTAA+TGG | 0.427399 | 5.4:+17959608 | MS.gene070106:CDS |
| AGGTAGGTTAGTTGAGGAGG+TGG | 0.430771 | 5.4:+17956872 | MS.gene070106:CDS |
| ATTTGGTCTTGTCATAATGA+TGG | 0.430945 | 5.4:-17964637 | None:intergenic |
| TCCACAACCAGGGTGTGTTC+GGG | 0.432015 | 5.4:+17957638 | MS.gene070106:CDS |
| AGCCTCTCGGGTAACTCATC+AGG | 0.439428 | 5.4:-17964547 | None:intergenic |
| AGGTTAGTTGAGGAGGTGGA+TGG | 0.443006 | 5.4:+17956876 | MS.gene070106:CDS |
| ATGAATACCTTTGGGACTGA+TGG | 0.443802 | 5.4:-17962274 | None:intergenic |
| TCTTTATCACCGACTTCAGC+TGG | 0.444993 | 5.4:+17956911 | MS.gene070106:CDS |
| AGCGTCATTCAAATTTGTTA+AGG | 0.445308 | 5.4:+17954991 | MS.gene070106:CDS |
| AACTGCGGTAGACCCAAAAC+TGG | 0.450435 | 5.4:+17964606 | MS.gene070106:CDS |
| ATATATTTGTTACCATTTGA+CGG | 0.450881 | 5.4:-17954543 | None:intergenic |
| GAGCATTCCTTTCATCTGAC+TGG | 0.451854 | 5.4:-17958872 | None:intergenic |
| AGCTTCATCACATTACAGTA+TGG | 0.452828 | 5.4:+17962153 | MS.gene070106:CDS |
| GAGCTATAGTAGAGCGATGA+AGG | 0.460950 | 5.4:+17955475 | MS.gene070106:CDS |
| TTGTTAAGGAGGACAACAAT+TGG | 0.467904 | 5.4:+17955005 | MS.gene070106:CDS |
| ACAAATCTGGGATGGACAAT+GGG | 0.469891 | 5.4:+17954577 | MS.gene070106:CDS |
| GGATTGTACGCCAAAGTGTT+GGG | 0.470225 | 5.4:+17963454 | MS.gene070106:CDS |
| AGGAGGACAACAATTGGAAA+TGG | 0.476365 | 5.4:+17955011 | MS.gene070106:CDS |
| GTCCTGGGCCTCCCATTTCG+AGG | 0.476760 | 5.4:-17958500 | None:intergenic |
| CACTCCTTGTTTATTGGGAA+AGG | 0.478937 | 5.4:+17963479 | MS.gene070106:CDS |
| TTTATGAGCTGCAGGGCCTC+CGG | 0.481132 | 5.4:+17955103 | MS.gene070106:intron |
| TCGGCGTAAATTACCCGAAA+AGG | 0.483197 | 5.4:-17959406 | None:intergenic |
| AATTGAGTATGTCATTGATC+AGG | 0.491233 | 5.4:+17954215 | MS.gene070106:CDS |
| AATGCTTCCTTGAGAAAGCT+TGG | 0.491262 | 5.4:-17955187 | None:intergenic |
| TGCAGATTGATCTGAAGGGT+TGG | 0.495326 | 5.4:+17958540 | MS.gene070106:CDS |
| TCTTGTCATAATGATGGATC+TGG | 0.498898 | 5.4:-17964631 | None:intergenic |
| AACAGCTCCAATAAGCCTCT+CGG | 0.503438 | 5.4:-17964560 | None:intergenic |
| GGTTAGTTGAGGAGGTGGAT+GGG | 0.504869 | 5.4:+17956877 | MS.gene070106:CDS |
| AAGATGCTGAACTTGTGTCC+TGG | 0.507164 | 5.4:-17958516 | None:intergenic |
| AACCTCGAAATGGGAGGCCC+AGG | 0.508833 | 5.4:+17958498 | MS.gene070106:CDS |
| GAGCTTGTGATGAGCATGGA+TGG | 0.509047 | 5.4:+17955536 | MS.gene070106:CDS |
| TAGTAGAGCGATGAAGGCAG+TGG | 0.509494 | 5.4:+17955481 | MS.gene070106:CDS |
| TGGATTGTACGCCAAAGTGT+TGG | 0.510393 | 5.4:+17963453 | MS.gene070106:CDS |
| GATAAGTCAATCTCATCATC+GGG | 0.511218 | 5.4:-17959381 | None:intergenic |
| TCGTCGAAAGTCGTGTATGA+AGG | 0.511729 | 5.4:+17951633 | MS.gene070106:CDS |
| GACCATGTGGCTAAGCGTCC+TGG | 0.518533 | 5.4:+17959672 | MS.gene070106:CDS |
| TCTTATGCAGATTGATCTGA+AGG | 0.519053 | 5.4:+17958535 | MS.gene070106:CDS |
| AGATGCTGAACTTGTGTCCT+GGG | 0.519406 | 5.4:-17958515 | None:intergenic |
| CAGGGTGCACAACCGTCAAA+TGG | 0.519973 | 5.4:+17954531 | MS.gene070106:CDS |
| CCAGGAAGGTAGGTTAGTTG+AGG | 0.520160 | 5.4:+17956866 | MS.gene070106:CDS |
| GTTGATTGCAACTATATTCG+TGG | 0.521889 | 5.4:+17963504 | MS.gene070106:CDS |
| GTCATTCAAATTTGTTAAGG+AGG | 0.522240 | 5.4:+17954994 | MS.gene070106:CDS |
| TACAAATCTGGGATGGACAA+TGG | 0.522313 | 5.4:+17954576 | MS.gene070106:CDS |
| GCCCGAACACACCCTGGTTG+TGG | 0.522848 | 5.4:-17957639 | None:intergenic |
| GATAACTGTGGTCCACAACC+AGG | 0.523683 | 5.4:+17957627 | MS.gene070106:CDS |
| ATCACCGACTTCAGCTGGAC+TGG | 0.524641 | 5.4:+17956916 | MS.gene070106:CDS |
| CGAACTGTGAAGGCTCCTGC+AGG | 0.529444 | 5.4:+17959594 | MS.gene070106:intron |
| ACAGCTCCAATAAGCCTCTC+GGG | 0.530101 | 5.4:-17964559 | None:intergenic |
| AGATAAGTCAATCTCATCAT+CGG | 0.531970 | 5.4:-17959382 | None:intergenic |
| CTCACTTGTGCTGCACAACC+AGG | 0.532680 | 5.4:-17959690 | None:intergenic |
| GAGAACATATTAACCATGAC+AGG | 0.533421 | 5.4:-17958906 | None:intergenic |
| AAGCTTTCTCAAGGAAGCAT+TGG | 0.534826 | 5.4:+17955189 | MS.gene070106:CDS |
| CAGATTGATCTGAAGGGTTG+GGG | 0.541421 | 5.4:+17958542 | MS.gene070106:CDS |
| AGCATTCCTTTCATCTGACT+GGG | 0.543386 | 5.4:-17958871 | None:intergenic |
| TACTGGCGTCGAAATGATGA+TGG | 0.544637 | 5.4:+17957296 | MS.gene070106:CDS |
| TTCATTGTGGCAGGTTTGTG+TGG | 0.545859 | 5.4:+17957249 | MS.gene070106:intron |
| ATCGCTCTACTATAGCTCCT+TGG | 0.547110 | 5.4:-17955470 | None:intergenic |
| AGAGGATTGAAGACGCATCA+TGG | 0.548036 | 5.4:+17952137 | MS.gene070106:CDS |
| ATCATCGGGCTCTTCATCCA+AGG | 0.552251 | 5.4:-17959367 | None:intergenic |
| CGAAAGTCGTGTATGAAGGA+TGG | 0.554950 | 5.4:+17951637 | MS.gene070106:CDS |
| AGATGATCGTGATAATGCTC+GGG | 0.555372 | 5.4:+17959428 | MS.gene070106:CDS |
| AAGGAGTGCTCCCAACACTT+TGG | 0.555865 | 5.4:-17963464 | None:intergenic |
| TACACGACTTTCGACGACAT+CGG | 0.556335 | 5.4:-17951627 | None:intergenic |
| ATTGCAGTTTCCAGGAAGGT+AGG | 0.557363 | 5.4:+17956856 | MS.gene070106:CDS |
| GAAGGATGGATGGTGAGATA+TGG | 0.559973 | 5.4:+17951651 | MS.gene070106:CDS |
| CAAGAAAGAAAAGAACCATC+GGG | 0.566625 | 5.4:+17954018 | MS.gene070106:CDS |
| GGAAGGTAGGTTAGTTGAGG+AGG | 0.567781 | 5.4:+17956869 | MS.gene070106:CDS |
| AATTCTACCTGATTATCTTG+CGG | 0.567901 | 5.4:-17951756 | None:intergenic |
| ACATCTAATGGATCTTGTTG+CGG | 0.567924 | 5.4:+17959620 | MS.gene070106:CDS |
| GAGATGATCGTGATAATGCT+CGG | 0.570486 | 5.4:+17959427 | MS.gene070106:CDS |
| TGAATACCTTTGGGACTGAT+GGG | 0.570588 | 5.4:-17962273 | None:intergenic |
| TATTGGTGTGATTACAACAC+TGG | 0.572285 | 5.4:+17963722 | MS.gene070106:CDS |
| TTTGGCGGAGACAATGCTGC+TGG | 0.576911 | 5.4:-17958586 | None:intergenic |
| CCCCAGGTTTAGTGCTCAGG+AGG | 0.578653 | 5.4:+17954956 | MS.gene070106:intron |
| TGTTCCAGGAACTAACTCCT+TGG | 0.578727 | 5.4:-17962191 | None:intergenic |
| CTTAAATGCATGCAGCATCA+GGG | 0.579159 | 5.4:+17954513 | MS.gene070106:intron |
| AGCTTGTGATGAGCATGGAT+GGG | 0.582177 | 5.4:+17955537 | MS.gene070106:CDS |
| TCAATAACCAAGCTTTCTCA+AGG | 0.582360 | 5.4:+17955180 | MS.gene070106:CDS |
| AACGTACATAACAAAGATCA+CGG | 0.583728 | 5.4:-17957274 | None:intergenic |
| CCAAGAGGCCCTAATTTGGA+AGG | 0.584955 | 5.4:+17954188 | MS.gene070106:CDS |
| GATTGCTGGAAGATATCTGA+TGG | 0.586915 | 5.4:+17959450 | MS.gene070106:CDS |
| ACAAGAAAGAAAAGAACCAT+CGG | 0.587114 | 5.4:+17954017 | MS.gene070106:CDS |
| TTAACCATGACAGGAATTCG+TGG | 0.587521 | 5.4:-17958897 | None:intergenic |
| TTACTGGCTTTCACGATCTG+AGG | 0.589200 | 5.4:-17954613 | None:intergenic |
| GAAGGCAGTGGGAGTTGTGG+AGG | 0.589759 | 5.4:+17955493 | MS.gene070106:CDS |
| CCGCCAAATGTTAAATAGTG+TGG | 0.593692 | 5.4:+17958601 | MS.gene070106:CDS |
| GATGGATGGTGAGATATGGC+CGG | 0.595048 | 5.4:+17951655 | MS.gene070106:CDS |
| AACCAGGACGCTTAGCCACA+TGG | 0.595404 | 5.4:-17959674 | None:intergenic |
| TGGGATGGACAATGGGAAGA+CGG | 0.597017 | 5.4:+17954584 | MS.gene070106:CDS |
| ATGACGAATTCCGAAACAGC+AGG | 0.597021 | 5.4:+17962239 | MS.gene070106:CDS |
| CAAATGTTAAATAGTGTGGC+TGG | 0.601388 | 5.4:+17958605 | MS.gene070106:CDS |
| CCTTAAAACCTCGAAATGGG+AGG | 0.607314 | 5.4:+17958492 | MS.gene070106:CDS |
| TGGGATTGCAGTTTCCAGGA+AGG | 0.608898 | 5.4:+17956852 | MS.gene070106:CDS |
| TCCTCCACGAATTCCTGTCA+TGG | 0.610999 | 5.4:+17958893 | MS.gene070106:CDS |
| AGACAATGCTGCTGGAAAGA+CGG | 0.616639 | 5.4:-17958578 | None:intergenic |
| ACGTACATAACAAAGATCAC+GGG | 0.619284 | 5.4:-17957273 | None:intergenic |
| AGTAGAGCGATGAAGGCAGT+GGG | 0.621946 | 5.4:+17955482 | MS.gene070106:CDS |
| GATGAAGGCAGTGGGAGTTG+TGG | 0.622626 | 5.4:+17955490 | MS.gene070106:CDS |
| GTCGATCGTTTATTCACATG+AGG | 0.627039 | 5.4:+17951688 | MS.gene070106:CDS |
| GGTTTGCCCAGTCAGATGAA+AGG | 0.631041 | 5.4:+17958865 | MS.gene070106:CDS |
| GAGCATTATCACGATCATCT+CGG | 0.632454 | 5.4:-17959425 | None:intergenic |
| ATATGTGCCCGAACACACCC+TGG | 0.634812 | 5.4:-17957645 | None:intergenic |
| GGAACCAGTCCAGCTGAAGT+CGG | 0.644960 | 5.4:-17956920 | None:intergenic |
| TGAATATTCAGATGACGATG+AGG | 0.646331 | 5.4:+17959031 | MS.gene070106:CDS |
| TGATGGAAACTGTAGAGTGG+AGG | 0.646853 | 5.4:+17952112 | MS.gene070106:CDS |
| GCTCATCCCATCAGTCCCAA+AGG | 0.649317 | 5.4:+17962267 | MS.gene070106:CDS |
| ATCAACTCACCATAACCCGA+TGG | 0.656939 | 5.4:-17954033 | None:intergenic |
| TGATGAGCATGGATGGGACA+CGG | 0.657714 | 5.4:+17955543 | MS.gene070106:CDS |
| TGGTGTGATTACAACACTGG+TGG | 0.660451 | 5.4:+17963725 | MS.gene070106:CDS |
| CTTATGCAGATTGATCTGAA+GGG | 0.662191 | 5.4:+17958536 | MS.gene070106:CDS |
| AGTCGTGTATGAAGGATGGA+TGG | 0.677491 | 5.4:+17951641 | MS.gene070106:CDS |
| TCATTTAGAGCTCAAAACTG+CGG | 0.678495 | 5.4:+17964591 | MS.gene070106:CDS |
| ATAACTGTGGTCCACAACCA+GGG | 0.681233 | 5.4:+17957628 | MS.gene070106:CDS |
| ACTGCCTTTCCCAATAAACA+AGG | 0.681486 | 5.4:-17963483 | None:intergenic |
| AATTGATGGAAACTGTAGAG+TGG | 0.682414 | 5.4:+17952109 | MS.gene070106:CDS |
| CGTACATAACAAAGATCACG+GGG | 0.690974 | 5.4:-17957272 | None:intergenic |
| ATACTGTAATGTGATGAAGC+TGG | 0.702976 | 5.4:-17962151 | None:intergenic |
| ACCATGACAGGAATTCGTGG+AGG | 0.722718 | 5.4:-17958894 | None:intergenic |
| TCTAGAGAACATGATAACTG+TGG | 0.722765 | 5.4:+17957615 | MS.gene070106:CDS |
| CTCCTGATGAGTTACCCGAG+AGG | 0.779300 | 5.4:+17964545 | MS.gene070106:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17949935 | 17964648 | 17949935 | ID=MS.gene070106 |
| chr5.4 | mRNA | 17949935 | 17964648 | 17949935 | ID=MS.gene070106.t1;Parent=MS.gene070106 |
| chr5.4 | exon | 17949935 | 17949937 | 17949935 | ID=MS.gene070106.t1.exon1;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17949935 | 17949937 | 17949935 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17951612 | 17951770 | 17951612 | ID=MS.gene070106.t1.exon2;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17951612 | 17951770 | 17951612 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17952089 | 17952163 | 17952089 | ID=MS.gene070106.t1.exon3;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17952089 | 17952163 | 17952089 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17953992 | 17954045 | 17953992 | ID=MS.gene070106.t1.exon4;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17953992 | 17954045 | 17953992 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17954168 | 17954236 | 17954168 | ID=MS.gene070106.t1.exon5;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17954168 | 17954236 | 17954168 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17954528 | 17954631 | 17954528 | ID=MS.gene070106.t1.exon6;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17954528 | 17954631 | 17954528 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17954962 | 17955032 | 17954962 | ID=MS.gene070106.t1.exon7;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17954962 | 17955032 | 17954962 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17955117 | 17955233 | 17955117 | ID=MS.gene070106.t1.exon8;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17955117 | 17955233 | 17955117 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17955336 | 17955376 | 17955336 | ID=MS.gene070106.t1.exon9;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17955336 | 17955376 | 17955336 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17955470 | 17955570 | 17955470 | ID=MS.gene070106.t1.exon10;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17955470 | 17955570 | 17955470 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17956851 | 17956946 | 17956851 | ID=MS.gene070106.t1.exon11;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17956851 | 17956946 | 17956851 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17957262 | 17957326 | 17957262 | ID=MS.gene070106.t1.exon12;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17957262 | 17957326 | 17957262 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17957601 | 17957672 | 17957601 | ID=MS.gene070106.t1.exon13;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17957601 | 17957672 | 17957601 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17958471 | 17958626 | 17958471 | ID=MS.gene070106.t1.exon14;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17958471 | 17958626 | 17958471 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17958853 | 17959082 | 17958853 | ID=MS.gene070106.t1.exon15;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17958853 | 17959082 | 17958853 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17959184 | 17959223 | 17959184 | ID=MS.gene070106.t1.exon16;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17959184 | 17959223 | 17959184 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17959367 | 17959521 | 17959367 | ID=MS.gene070106.t1.exon17;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17959367 | 17959521 | 17959367 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17959606 | 17959707 | 17959606 | ID=MS.gene070106.t1.exon18;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17959606 | 17959707 | 17959606 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17962023 | 17962067 | 17962023 | ID=MS.gene070106.t1.exon19;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17962023 | 17962067 | 17962023 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17962148 | 17962288 | 17962148 | ID=MS.gene070106.t1.exon20;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17962148 | 17962288 | 17962148 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17963447 | 17963542 | 17963447 | ID=MS.gene070106.t1.exon21;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17963447 | 17963542 | 17963447 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17963669 | 17963770 | 17963669 | ID=MS.gene070106.t1.exon22;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17963669 | 17963770 | 17963669 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| chr5.4 | exon | 17964538 | 17964648 | 17964538 | ID=MS.gene070106.t1.exon23;Parent=MS.gene070106.t1 |
| chr5.4 | CDS | 17964538 | 17964648 | 17964538 | ID=cds.MS.gene070106.t1;Parent=MS.gene070106.t1 |
| Gene Sequence |
| Protein sequence |
