AlfalfaGEDB | MS.gene07011

M. sativa cultivar XinJiangDaYe / MS.gene07011

KEGG: K01051
GO: GO:0003674 GO:0003824 GO:0004857 GO:0008150 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0042545 GO:0045229 GO:0052689 GO:0071554 GO:0071555 GO:0071840 GO:0098772
PFAM: PF01095.22 PF04043.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07011.t1	XP_013450376.1	97.7	558	8	2	1	554	1	557	1.20E-306	1061.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07011.t1	O81301	55.6	502	193	5	66	553	33	518	6.7e-152	538.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07011.t1	A0A072U3V6	97.7	558	8	2	1	554	1	557	8.9e-307	1061.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056931	MS.gene07011	0.805711	1.17E-49	-1.69E-46
MS.gene056933	MS.gene07011	0.805535	1.27E-49	-1.69E-46
MS.gene060559	MS.gene07011	0.815102	1.10E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07011.t1	MTR_7g108905	97.670	558	8	2	1	554	1	557	0.0	1115
MS.gene07011.t1	MTR_8g023310	50.662	529	239	8	41	553	67	589	2.89e-178	515
MS.gene07011.t1	MTR_1g008140	44.522	575	281	10	8	554	44	608	2.84e-168	491
MS.gene07011.t1	MTR_3g091380	44.755	572	280	9	8	554	38	598	5.68e-166	484
MS.gene07011.t1	MTR_4g025730	47.417	542	247	14	9	549	1	505	7.94e-161	468
MS.gene07011.t1	MTR_4g025690	48.814	506	229	11	46	549	32	509	4.29e-160	466
MS.gene07011.t1	MTR_7g050870	47.610	523	244	9	42	553	51	554	6.87e-160	467
MS.gene07011.t1	MTR_7g050980	45.505	545	273	9	14	549	22	551	8.31e-157	459
MS.gene07011.t1	MTR_1g083520	45.422	557	252	13	12	549	1	524	4.95e-154	451
MS.gene07011.t1	MTR_1g088020	50.625	480	206	9	96	549	77	551	1.80e-153	451

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07011.t1	AT4G02320	55.578	502	193	5	66	553	33	518	0.0	564
MS.gene07011.t1	AT4G02300	55.172	493	201	3	67	551	50	530	0.0	546
MS.gene07011.t1	AT1G53830	50.735	544	242	9	30	553	50	587	9.68e-178	514
MS.gene07011.t1	AT3G14310	47.349	547	258	8	33	553	50	592	1.36e-166	486
MS.gene07011.t1	AT5G53370	44.912	570	267	10	14	554	35	586	7.36e-162	474
MS.gene07011.t1	AT5G53370	44.912	570	267	10	14	554	71	622	2.27e-161	474
MS.gene07011.t1	AT3G49220	46.565	524	250	8	45	554	90	597	6.89e-160	469
MS.gene07011.t1	AT3G49220	46.565	524	250	8	45	554	135	642	3.11e-159	469
MS.gene07011.t1	AT2G45220	53.813	459	168	11	99	549	85	507	3.42e-159	464
MS.gene07011.t1	AT3G43270	51.116	448	213	4	110	553	80	525	4.48e-158	462

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Find 128 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATTTGATGTTAGT+TGG	0.349295	7.2:+5296204	MS.gene07011:CDS
AAAAGTAGATGATTGGAAAG+TGG	0.570646	7.2:-5296283	None:intergenic
AAATAGTAGAACTAAAATTG+TGG	0.600237	7.2:-5295012	None:intergenic
AACAGTGAACTGACTTGCCT+CGG	0.552572	7.2:-5299221	None:intergenic
AAGAATTTGTTCACTGCACA+AGG	0.478688	7.2:+5298893	MS.gene07011:CDS
AAGATCTGGGAAAGTGGATA+AGG	0.473621	7.2:-5295138	None:intergenic
AAGGTTGAGACACAAAGGTC+TGG	0.465297	7.2:-5295119	None:intergenic
AAGTCGAAGTCCGGTGCAAT+TGG	0.449411	7.2:-5295234	None:intergenic
AATATGGTAAAGTGAAAGAT+GGG	0.551007	7.2:+5295600	MS.gene07011:CDS
AATGAATGGTTGAGCTCTAC+TGG	0.377444	7.2:+5299262	MS.gene07011:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTAGATGATTGGAAAG+TGG	-	chr7.2:5296286-5296305	None:intergenic	30.0%
AATTTGATGTTAGTTGGAGA+TGG	+	chr7.2:5296210-5296229	MS.gene07011:CDS	30.0%
ACTAAAATTGTGGAGAGAAT+TGG	-	chr7.2:5295005-5295024	None:intergenic	30.0%
ACTTACCAAAAGTAGATGAT+TGG	-	chr7.2:5296293-5296312	None:intergenic	30.0%
ACTTATAAGGTGAATAAGTG+GGG	+	chr7.2:5297768-5297787	MS.gene07011:intron	30.0%
ATACAGTTAAACAGAGTACA+AGG	+	chr7.2:5296470-5296489	MS.gene07011:intron	30.0%
ATATAGACCATCTCACAATA+TGG	-	chr7.2:5295914-5295933	None:intergenic	30.0%
ATCTCCAACTAACATCAAAT+TGG	-	chr7.2:5296211-5296230	None:intergenic	30.0%
ATGATTTGAGCTCAATTGTT+TGG	-	chr7.2:5296886-5296905	None:intergenic	30.0%
ATTTGATGTTAGTTGGAGAT+GGG	+	chr7.2:5296211-5296230	MS.gene07011:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	5294966	5299312	5294966	ID=MS.gene07011
chr7.2	mRNA	5294966	5299312	5294966	ID=MS.gene07011.t1;Parent=MS.gene07011
chr7.2	exon	5294966	5295774	5294966	ID=MS.gene07011.t1.exon1;Parent=MS.gene07011.t1
chr7.2	CDS	5294966	5295774	5294966	ID=cds.MS.gene07011.t1;Parent=MS.gene07011.t1
chr7.2	exon	5296146	5296306	5296146	ID=MS.gene07011.t1.exon2;Parent=MS.gene07011.t1
chr7.2	CDS	5296146	5296306	5296146	ID=cds.MS.gene07011.t1;Parent=MS.gene07011.t1
chr7.2	exon	5298618	5299312	5298618	ID=MS.gene07011.t1.exon3;Parent=MS.gene07011.t1
chr7.2	CDS	5298618	5299312	5298618	ID=cds.MS.gene07011.t1;Parent=MS.gene07011.t1

Gene Sequence

>MS.gene07011

ATGAGAGGGAAAACAGCACCATTGCTTGCTCTCATGCCAATTCTCTCCACAATTTTAGTTCTACTATTTTCAGTAACCAATTTCTCAAAATTAGCAACAGCAACAGCAACACTCCAAACAGTAGCCCAATCAGCATGCGAAGGAACACTCTACCCAGACCTTTGTGTCTCAACCTTATCCACTTTCCCAGATCTTACCTCAAAAACAGTCCCACAAATGATTTGCTCTGTCCTAAACAATACCATAAAAGAGGTTAAACAATCATCTTCCAATTGCACCGGACTTCGACTTCGCGGTCGAAGTGCACAAAGCATACTTGACCAAAGAGCCCTTGAGGATTGTGTTAATTTATTTGACACTACCATTGACGAACTCAAAACAACCATTTCTGATCTCTCTCAAACTCAAACCACAGTAGCTTCTAGCAGTAAGCGTGACTGTCAAACTCTACTTAGTGGTGCAATGACCAATGTGTACACATGTTTGGATGGTTTTGCATATAGTAAATCAAAATTGAGAAAAAAAATTGAGGCCAAGTTGAATGATATTTCTAGTCACGTTAGTAACTCACTTGCCATGTTGAAGAAAGTTCCTGGAGTGAAGACTAAAGCTTCTGAGTCTGAAACTTTCCCTGAATATGGTAAAGTGAAAGATGGGTTTCCATCATGGGTGTCCCCGAAAGATAGGAAGCTACTACAAGCTGCAGTGAATCAAACCAAGTTTGATCTTGTGGTTGCTAAAGATGGCACAGGCAACTTTACCACTATAGGAGAAGCAATTGCTGCAGCTCCAAATTCTAGCGCAACTAGGTAACCACTACATACCTATAAATTATGAATATAGATCATCTAGCTCACTAATATGGTGTTGCACACGTCGTGGACCATTCAATGTAGAGAGATAAGGTTTATCTCTCTAATTCTAATGGTTATTACCGCTACAACACCATATTGTGAGATGGTCTATATTCATAATTTATGTCGGGCGCACATGCAATTATATATTGACACAAATTAATTCTTTAAACAAATACTAGATAGTTTGTTATATTCATTTCCACAATTGAACATGGTCCATGGAGATTGGAGACATATTAGTTTACTAAAAAAACTTCTGTTTATGTGTACGTTTTTGTTTTGTTCCTACTATGTGACCTTAAATAGTGTGTTATTGATTACAGATTTGTGATACACATAAAGGCTGGGGCTTACTTTGAAAACGTGGAAGTGATAAAGAAGAAAACCAATTTGATGTTAGTTGGAGATGGGATTGGACAGACTGTTGTGAAGGCCAGCAGAAATGTTGTAGATGGGTGGACCACTTTCCAATCATCTACTTTTGGTAAGTTTAATTAAATTTCAACCTTTTTCTACTAATTTTCCTCGTATTAATTGTAGAATGTAGACTGCATTTAGATAAAATAAATAAATAAAAATATCTTTGTTTTTAGACAAAATAAAAATATCCCTTAAAAAAGATAAAATAATTGAATGGCATATGGAATATACAGTTAAACAGAGTACAAGGGATATATTTCGTAAAAGAACAAAAGAGTACAAGAGATAACCAATATTACTTGAACACAATTTCAAATCAAAATTATTTCGGCGTACACATGCATATAAAAAAAATTAAATGATGTGAATAAATTAAAATAGAAAATCAAAATTATTTCGTTAGTTTCAACAACAATAATACTCTTTTTTTACAAAATACAATAATACTCTTTTTTTTATTATCATCTATGTTATTATTGTTGGATTAATTTGCATGTATTGACGATGCATTAACGATGTAAATATTTTTACATGTGAATCTAATTAAATCAAATAACTAGTATATATTTTAAAATTCAATCTAAACAATGTACATTATAAAGTGATTTGCTTAGATGCATGTGGGAAAATAACAATGGAACCAAACAATTGAGCTCAAATCATCAAATAAATTGTTCAAACATATCGAAGAAATTGGTCAAATTTTGGTTACCTCCTGGATAATCTCTAGATTATCAAAGACCCTTCCACTGAAACTGGGGGTTAACAGAAAAAATTATAATGCAATTGTATACAGATTAATTTCTTTAGATGTTCATTATCAATGTAACATGATTCTAATTGGGAAAATTATGGTTAAGTTCCTATATTTAGTTGGGGAAATGAACTTAATTGATAAAAAGTAATTTTAAATGATTAGAACAATAATTAGTTTAAAAAAAGACAGACATGCACCCATGCAGAGCTGCATTAGAATATGCAAATTTTGTATAGGAGAAAGGGACCTGCACTTTCTGTTGTTTTTCTACAATAGATCGAAATCACGGACCAGCGTCGGTTGTCTGACAAAGAGCAAGATAGTATGAATTTTTGTACTAGTACGCAAGTTGTACATATATATTTCAAGGGGGCTGTTAACTTGCACCCACCTAAAAACACTAAGGTGCAAGTTAACAAGCTGCACCTACTAGTTATTTACCAAAACACCCATGTTTTTCTATTATAAACAAATATTATTTATGTTATTTACAAAAATGTCCTTTTAATTAAAATAAAGTTTAATAGAGACAAAAGGGTGTTTTAGTAAAGTACAAGTAGGTGCAGCTTGTTAACTTGCACCTTAGTGTTTTTAGGTGGGTGCAAGTTAACAGCCCCCATATTTCAACACGCATTTAGGTGTAACTGTATTTATTTAAGTCAGAAAATTTGAGTTTTTCTCTCTCAATCAAACATTCGTACTAATTAGAACTAACATTCGGTCAATTCCTTTTTTTTTTTTTATCAAGTAGCATAGTGGCTAGAATTCACTTATAAGGTGAATAAGTGGGGTGTTCAGAGATCGAACCCCGACCCCTGCATATAATAATGCATTGTCCTACCAACTGAACTATGCTCACCGGACCGGTCAATTCCTATTTTATTGACACTTTAATATTTTCAGTTCCTTTGCCTAATTTTCTTCTATTCATTACATTTATCTTTTAACATATATTATTTTTTATCAGACATGTGACGTGTGAGGAATATTTTTTAAAATTTTAAAATCTATTGGTGGTCCATCTTAATTGGCTATGATTGAACACCGAAAGATGATCCATAAATCCAAATCTCAATTTGCCTATGTACCCAGTTTTCCCTCCCTTTGTTATCAATCAGATCCAATTAAGCAAGAAAAGTAAGTAATTTTATATGGACCACCAGCCAACTAAAGAAAAGAACATTGTAAAAACGACAAAAATATGGAGCAATATTAAATAAGTTTACTCATTGCCAACAGCAATAATTTTAGTCAACGATCTGTCTTTCATAGACAGAAAAAGAAGTATGTGTGTTTAGCCAAATTAAATCATTAAAGTATGGGATTTCAGTCAAGCTAAACAAAGCACCGTTTAGTAAAGTATAAAATGGCATCTTTCTCTTAAAAGTGTGTTAGTTATGAGCGAAATGTTAGAGAAAGAGAGACCAAAAAGAGAAAGAGGTGATTTAATTATGTTACTATAAAATTAAACAACTAATTTAATAAATTAATTTTCTTTTATGTTACTTTTTATTTTGCTTACTTGCTGAACATTAAAACTTTGAGCTAAACTTTAATGTTCTGCATTGTTTCAATTGTTCTTCAATTTTTTACACAATTGAATATTGGTGGTTTTCAGCTGTTGTGGGAGACAAATTCATAGCCAAAGGTATAACCTTTGAGAACTCAGCCGGACCTAGCAAACATCAAGCGGTAGCGGTGAGAAATGGCGCCGACTTCTCAGCCTTCTACCAATGTAGCTTTGTGGCTTACCAGGACACTCTCTATGTCCACTCCCTCCGTCAATTCTACCGCGAATGTGATGTTTATGGAACTGTAGACTTCATCTTTGGCAATGCAGCGGTGGTATTCCAGAACTGCAACCTATATGCACGCAAACCCGATCCAAAGCAAAAGAATTTGTTCACTGCACAAGGCAGAGAAGATCCTAACCAAAACACCGGAATTTCAATCTTGAATTGTAAAATTGCAGCTGCCGCGGATTTGATTCCAGTACAATCAACGTTCAAGAGTTACCTCGGTCGTCCTTGGAAAAAATATTCAAGAACTGTTTATCTGAATTCTTTTATAGATAATTTGATTGATCCAGCAGGATGGTTAGAATGGAATGGAACGTTTGCTTTGGATACATTGTTCTATGGTGAGTATAAGAATAGAGGTCCTGGTTCGAATACAAGTGCCAGAGTTACGTGGCCAGGTTATAAAGTCATTACAAACACTACCGAGGCAAGTCAGTTCACTGTTAGACAATTTATACAAGGAAATGAATGGTTGAGCTCTACTGGAGTTCCATTTTTCCTTGATTTGAGTTGA

Protein sequence

>MS.gene07011.t1

MRGKTAPLLALMPILSTILVLLFSVTNFSKLATATATLQTVAQSACEGTLYPDLCVSTLSTFPDLTSKTVPQMICSVLNNTIKEVKQSSSNCTGLRLRGRSAQSILDQRALEDCVNLFDTTIDELKTTISDLSQTQTTVASSSKRDCQTLLSGAMTNVYTCLDGFAYSKSKLRKKIEAKLNDISSHVSNSLAMLKKVPGVKTKASESETFPEYGKVKDGFPSWVSPKDRKLLQAAVNQTKFDLVVAKDGTGNFTTIGEAIAAAPNSSATRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGQTVVKASRNVVDGWTTFQSSTFAVVGDKFIAKGITFENSAGPSKHQAVAVRNGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPKQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVQSTFKSYLGRPWKKYSRTVYLNSFIDNLIDPAGWLEWNGTFALDTLFYGEYKNRGPGSNTSARVTWPGYKVITNTTEASQFTVRQFIQGNEWLSSTGVPFFLDLS