Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070121.t1 | GAU13237.1 | 71.9 | 288 | 79 | 2 | 1 | 287 | 163 | 449 | 6.60E-118 | 433.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070121.t1 | Q9FGH9 | 41.5 | 287 | 141 | 8 | 1 | 269 | 339 | 616 | 1.2e-48 | 194.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070121.t1 | A0A2Z6M351 | 71.9 | 288 | 79 | 2 | 1 | 287 | 163 | 449 | 4.7e-118 | 433.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056296 | MS.gene070121 | 0.803646 | 3.16E-49 | -1.69E-46 |
MS.gene059247 | MS.gene070121 | 0.806908 | 6.55E-50 | -1.69E-46 |
MS.gene061114 | MS.gene070121 | -0.814259 | 1.69E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070121.t1 | MTR_5g073900 | 66.255 | 243 | 66 | 3 | 1 | 243 | 119 | 345 | 4.99e-105 | 310 |
MS.gene070121.t1 | MTR_5g074190 | 56.522 | 276 | 65 | 5 | 1 | 275 | 192 | 413 | 5.90e-93 | 284 |
MS.gene070121.t1 | MTR_5g073920 | 42.662 | 293 | 151 | 6 | 3 | 286 | 387 | 671 | 2.19e-64 | 214 |
MS.gene070121.t1 | MTR_5g073450 | 43.945 | 289 | 137 | 6 | 3 | 269 | 346 | 631 | 2.23e-63 | 211 |
MS.gene070121.t1 | MTR_3g464010 | 43.262 | 282 | 144 | 6 | 6 | 275 | 395 | 672 | 3.88e-61 | 205 |
MS.gene070121.t1 | MTR_3g031130 | 42.955 | 291 | 134 | 8 | 1 | 269 | 337 | 617 | 6.05e-57 | 193 |
MS.gene070121.t1 | MTR_5g074130 | 40.214 | 281 | 156 | 5 | 4 | 273 | 398 | 677 | 4.62e-55 | 190 |
MS.gene070121.t1 | MTR_5g073460 | 40.411 | 292 | 149 | 7 | 1 | 269 | 401 | 690 | 2.68e-54 | 187 |
MS.gene070121.t1 | MTR_5g073780 | 41.880 | 234 | 114 | 5 | 46 | 270 | 2 | 222 | 3.21e-48 | 160 |
MS.gene070121.t1 | MTR_5g093530 | 36.918 | 279 | 145 | 4 | 4 | 273 | 318 | 574 | 6.08e-47 | 165 |
MS.gene070121.t1 | MTR_5g073620 | 41.935 | 248 | 121 | 6 | 32 | 270 | 834 | 1067 | 1.42e-44 | 161 |
MS.gene070121.t1 | MTR_5g073620 | 35.461 | 141 | 73 | 3 | 3 | 139 | 434 | 560 | 3.00e-15 | 76.3 |
MS.gene070121.t1 | MTR_7g026630 | 28.523 | 298 | 176 | 9 | 3 | 269 | 357 | 648 | 5.08e-29 | 116 |
MS.gene070121.t1 | MTR_6g033310 | 27.303 | 304 | 177 | 7 | 3 | 269 | 427 | 723 | 5.83e-27 | 110 |
MS.gene070121.t1 | MTR_4g103540 | 29.412 | 289 | 179 | 8 | 3 | 269 | 393 | 678 | 4.78e-26 | 107 |
MS.gene070121.t1 | MTR_1g057560 | 28.621 | 290 | 178 | 8 | 1 | 269 | 342 | 623 | 5.64e-26 | 107 |
MS.gene070121.t1 | MTR_5g073490 | 38.182 | 165 | 76 | 4 | 116 | 269 | 3 | 152 | 1.97e-25 | 99.4 |
MS.gene070121.t1 | MTR_5g073480 | 30.824 | 279 | 124 | 7 | 1 | 265 | 402 | 625 | 2.28e-25 | 105 |
MS.gene070121.t1 | MTR_1g090620 | 27.090 | 299 | 181 | 9 | 1 | 269 | 348 | 639 | 8.68e-25 | 104 |
MS.gene070121.t1 | MTR_8g021330 | 26.490 | 302 | 186 | 8 | 1 | 269 | 305 | 603 | 8.07e-24 | 101 |
MS.gene070121.t1 | MTR_7g013770 | 27.451 | 306 | 175 | 13 | 1 | 269 | 369 | 664 | 5.69e-23 | 99.0 |
MS.gene070121.t1 | MTR_1g117090 | 30.270 | 185 | 117 | 3 | 98 | 270 | 483 | 667 | 2.83e-21 | 94.0 |
MS.gene070121.t1 | MTR_3g025900 | 25.806 | 279 | 155 | 9 | 22 | 269 | 349 | 606 | 1.51e-16 | 80.1 |
MS.gene070121.t1 | MTR_4g024790 | 50.000 | 84 | 23 | 2 | 36 | 119 | 1 | 65 | 7.84e-15 | 68.2 |
MS.gene070121.t1 | MTR_2g096230 | 24.172 | 302 | 180 | 10 | 7 | 280 | 308 | 588 | 1.10e-13 | 71.2 |
MS.gene070121.t1 | MTR_7g017290 | 70.455 | 44 | 13 | 0 | 185 | 228 | 46 | 89 | 2.15e-13 | 65.1 |
MS.gene070121.t1 | MTR_7g017290 | 65.217 | 46 | 15 | 1 | 62 | 107 | 1 | 45 | 4.24e-12 | 61.6 |
MS.gene070121.t1 | MTR_1g067480 | 25.753 | 299 | 179 | 11 | 4 | 269 | 312 | 600 | 5.56e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070121.t1 | AT5G58430 | 40.845 | 284 | 147 | 6 | 1 | 269 | 339 | 616 | 3.88e-59 | 199 |
MS.gene070121.t1 | AT1G07000 | 35.439 | 285 | 155 | 8 | 1 | 269 | 323 | 594 | 1.02e-42 | 154 |
MS.gene070121.t1 | AT5G13150 | 30.693 | 303 | 163 | 9 | 3 | 269 | 351 | 642 | 1.07e-31 | 124 |
MS.gene070121.t1 | AT5G13990 | 30.272 | 294 | 168 | 9 | 3 | 269 | 396 | 679 | 1.93e-31 | 123 |
MS.gene070121.t1 | AT3G14090 | 25.510 | 294 | 181 | 8 | 1 | 262 | 317 | 604 | 2.88e-28 | 114 |
MS.gene070121.t1 | AT1G54090 | 26.510 | 298 | 177 | 8 | 1 | 262 | 311 | 602 | 6.49e-27 | 110 |
MS.gene070121.t1 | AT1G72470 | 28.333 | 300 | 181 | 8 | 1 | 269 | 323 | 619 | 9.72e-27 | 109 |
MS.gene070121.t1 | AT5G52340 | 29.268 | 287 | 178 | 7 | 1 | 269 | 342 | 621 | 2.42e-25 | 105 |
MS.gene070121.t1 | AT5G03540 | 26.756 | 299 | 177 | 10 | 1 | 269 | 342 | 628 | 1.91e-23 | 100 |
MS.gene070121.t1 | AT5G03540 | 26.756 | 299 | 177 | 10 | 1 | 269 | 227 | 513 | 2.09e-23 | 100 |
MS.gene070121.t1 | AT5G03540 | 26.756 | 299 | 177 | 10 | 1 | 269 | 368 | 654 | 2.55e-23 | 100 |
MS.gene070121.t1 | AT5G50380 | 26.441 | 295 | 188 | 7 | 1 | 269 | 378 | 669 | 8.99e-23 | 98.6 |
MS.gene070121.t1 | AT5G52350 | 26.871 | 294 | 190 | 8 | 1 | 276 | 296 | 582 | 2.04e-22 | 97.4 |
MS.gene070121.t1 | AT3G29400 | 25.633 | 316 | 176 | 11 | 2 | 269 | 341 | 645 | 3.33e-18 | 85.1 |
MS.gene070121.t1 | AT1G07725 | 26.616 | 263 | 158 | 9 | 1 | 238 | 310 | 562 | 6.95e-15 | 75.1 |
MS.gene070121.t1 | AT5G61010 | 25.431 | 232 | 145 | 7 | 56 | 269 | 403 | 624 | 2.30e-13 | 70.5 |
MS.gene070121.t1 | AT5G61010 | 25.431 | 232 | 145 | 7 | 56 | 269 | 403 | 624 | 2.30e-13 | 70.5 |
Find 40 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGAATCTGCTTTAGAATT+TGG | 0.139042 | 5.4:-18172073 | None:intergenic |
AGTACCAACTTGAAACCTTT+TGG | 0.261690 | 5.4:+18171942 | MS.gene070121:CDS |
AGTAAACAAGGATTCAAATT+CGG | 0.329353 | 5.4:-18171540 | None:intergenic |
TTGGATGAGTATATAGAGTA+TGG | 0.350795 | 5.4:+18172271 | MS.gene070121:CDS |
AGCCACCGGCTACATCGTTT+TGG | 0.351952 | 5.4:+18171718 | MS.gene070121:CDS |
GTAAACAAGGATTCAAATTC+GGG | 0.365812 | 5.4:-18171539 | None:intergenic |
GATTGTTGGGCTGATGGTGG+TGG | 0.374574 | 5.4:+18171674 | MS.gene070121:CDS |
TTCACAGATAGAGCTTATAA+TGG | 0.404307 | 5.4:+18171826 | MS.gene070121:CDS |
GAGGATGTTGATTGTGTAAG+AGG | 0.430127 | 5.4:+18172337 | MS.gene070121:CDS |
CGATGCAGAGTTGGATTGTT+GGG | 0.442610 | 5.4:+18171661 | MS.gene070121:CDS |
AAGCACTGAAATTCAAGAAT+AGG | 0.445504 | 5.4:+18171579 | MS.gene070121:CDS |
TACCCTTTGGTTGTTGCTGA+TGG | 0.458174 | 5.4:+18171782 | MS.gene070121:CDS |
CATATGAAAACTTCATTGCT+AGG | 0.458950 | 5.4:+18172224 | MS.gene070121:CDS |
AATCTTACAAGAATACCCTT+TGG | 0.462105 | 5.4:+18171769 | MS.gene070121:CDS |
CTGAAATTCAAGAATAGGTT+GGG | 0.462376 | 5.4:+18171584 | MS.gene070121:CDS |
ACAAAATCCATCATCCCAAA+AGG | 0.477678 | 5.4:-18171957 | None:intergenic |
CCGATGCAGAGTTGGATTGT+TGG | 0.483382 | 5.4:+18171660 | MS.gene070121:CDS |
ATTGTGTAAGAGGATCAATT+AGG | 0.486326 | 5.4:+18172347 | MS.gene070121:CDS |
ATCCTTGTTTACTGATTCGT+TGG | 0.486501 | 5.4:+18171550 | MS.gene070121:CDS |
CAACAATCCAACTCTGCATC+GGG | 0.493910 | 5.4:-18171659 | None:intergenic |
TTGGATTGTTGGGCTGATGG+TGG | 0.496160 | 5.4:+18171671 | MS.gene070121:CDS |
GAGTTGGATTGTTGGGCTGA+TGG | 0.509673 | 5.4:+18171668 | MS.gene070121:CDS |
TTGGTTGTTGCTGATGGAGT+AGG | 0.521302 | 5.4:+18171788 | MS.gene070121:CDS |
ACTGAAATTCAAGAATAGGT+TGG | 0.527255 | 5.4:+18171583 | MS.gene070121:CDS |
AGGATCAATTAGGATTCAGT+TGG | 0.532656 | 5.4:+18172357 | MS.gene070121:CDS |
CAGAAGTTTCGGGAGATATG+TGG | 0.544254 | 5.4:+18172121 | MS.gene070121:CDS |
CTCCATCAGCAACAACCAAA+GGG | 0.550645 | 5.4:-18171784 | None:intergenic |
TCTTACACCCGATGCAGAGT+TGG | 0.555038 | 5.4:+18171652 | MS.gene070121:CDS |
CCAACAATCCAACTCTGCAT+CGG | 0.555872 | 5.4:-18171660 | None:intergenic |
TTTCTGGTCAAGGAAGAACT+TGG | 0.559149 | 5.4:+18171742 | MS.gene070121:CDS |
TTCTAAAGCAGATTCAATGA+AGG | 0.559551 | 5.4:+18172078 | MS.gene070121:CDS |
CCGGTGGCTTCACATGTCAT+AGG | 0.574627 | 5.4:-18171704 | None:intergenic |
ACTCCATCAGCAACAACCAA+AGG | 0.577154 | 5.4:-18171785 | None:intergenic |
GAAAGCCAAAACGATGTAGC+CGG | 0.589042 | 5.4:-18171723 | None:intergenic |
CATCCCAAAAGGTTTCAAGT+TGG | 0.593566 | 5.4:-18171946 | None:intergenic |
AACCAACGAATCAGTAAACA+AGG | 0.627549 | 5.4:-18171552 | None:intergenic |
CCTATGACATGTGAAGCCAC+CGG | 0.631734 | 5.4:+18171704 | MS.gene070121:CDS |
AGCCAAAACGATGTAGCCGG+TGG | 0.678386 | 5.4:-18171720 | None:intergenic |
TATGTGGAATTCAGTCAACA+TGG | 0.701076 | 5.4:+18172137 | MS.gene070121:CDS |
AGCTAAGTCACAAATATACG+AGG | 0.707978 | 5.4:+18171871 | MS.gene070121:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AGTAAACAAGGATTCAAATT+CGG | - | chr5.4:18171543-18171562 | None:intergenic | 25.0% |
!! | AGAAACATTTTCATGGAATT+TGG | + | chr5.4:18171617-18171636 | MS.gene070121:CDS | 25.0% |
!! | AGTATGTAGAAACATTTTCA+TGG | + | chr5.4:18171610-18171629 | MS.gene070121:CDS | 25.0% |
!! | GAAACATTTTCATGGAATTT+GGG | + | chr5.4:18171618-18171637 | MS.gene070121:CDS | 25.0% |
!! | TGATTTTCACGGTAAAAATT+TGG | + | chr5.4:18172252-18172271 | MS.gene070121:CDS | 25.0% |
!!! | ATTGAATCTGCTTTAGAATT+TGG | - | chr5.4:18172076-18172095 | None:intergenic | 25.0% |
!!! | GGAATTTTTTCAGACAAATT+TGG | + | chr5.4:18171847-18171866 | MS.gene070121:CDS | 25.0% |
!!! | TGATGGATTTTGTAAAAACA+AGG | + | chr5.4:18171967-18171986 | MS.gene070121:CDS | 25.0% |
AATCTTACAAGAATACCCTT+TGG | + | chr5.4:18171769-18171788 | MS.gene070121:CDS | 30.0% | |
ACTGAAATTCAAGAATAGGT+TGG | + | chr5.4:18171583-18171602 | MS.gene070121:CDS | 30.0% | |
ATGAAAAAATAACGCAAAGC+AGG | - | chr5.4:18171899-18171918 | None:intergenic | 30.0% | |
ATTGTGTAAGAGGATCAATT+AGG | + | chr5.4:18172347-18172366 | MS.gene070121:CDS | 30.0% | |
CATATGAAAACTTCATTGCT+AGG | + | chr5.4:18172224-18172243 | MS.gene070121:CDS | 30.0% | |
CTGAAATTCAAGAATAGGTT+GGG | + | chr5.4:18171584-18171603 | MS.gene070121:CDS | 30.0% | |
GTAAACAAGGATTCAAATTC+GGG | - | chr5.4:18171542-18171561 | None:intergenic | 30.0% | |
TGAAAAAATAACGCAAAGCA+GGG | - | chr5.4:18171898-18171917 | None:intergenic | 30.0% | |
TTCACAGATAGAGCTTATAA+TGG | + | chr5.4:18171826-18171845 | MS.gene070121:CDS | 30.0% | |
TTGGATGAGTATATAGAGTA+TGG | + | chr5.4:18172271-18172290 | MS.gene070121:CDS | 30.0% | |
!! | AACTCTATTTTAGAAGCTCA+TGG | + | chr5.4:18172002-18172021 | MS.gene070121:CDS | 30.0% |
!! | AAGCACTGAAATTCAAGAAT+AGG | + | chr5.4:18171579-18171598 | MS.gene070121:CDS | 30.0% |
!! | TTCTAAAGCAGATTCAATGA+AGG | + | chr5.4:18172078-18172097 | MS.gene070121:CDS | 30.0% |
!! | TTTTAGAAGCTCATGGAATA+AGG | + | chr5.4:18172009-18172028 | MS.gene070121:CDS | 30.0% |
!!! | CTTTTTCAATCAGAAGTTTC+GGG | + | chr5.4:18172111-18172130 | MS.gene070121:CDS | 30.0% |
!!! | GCTTTTTCAATCAGAAGTTT+CGG | + | chr5.4:18172110-18172129 | MS.gene070121:CDS | 30.0% |
!!! | TAACCAGTTGTTTTTGTTAG+AGG | + | chr5.4:18172318-18172337 | MS.gene070121:CDS | 30.0% |
AACCAACGAATCAGTAAACA+AGG | - | chr5.4:18171555-18171574 | None:intergenic | 35.0% | |
ACAAAATCCATCATCCCAAA+AGG | - | chr5.4:18171960-18171979 | None:intergenic | 35.0% | |
AGCTAAGTCACAAATATACG+AGG | + | chr5.4:18171871-18171890 | MS.gene070121:CDS | 35.0% | |
AGGATCAATTAGGATTCAGT+TGG | + | chr5.4:18172357-18172376 | MS.gene070121:CDS | 35.0% | |
CATCCTCTAACAAAAACAAC+TGG | - | chr5.4:18172324-18172343 | None:intergenic | 35.0% | |
TATGTGGAATTCAGTCAACA+TGG | + | chr5.4:18172137-18172156 | MS.gene070121:CDS | 35.0% | |
! | AGTACCAACTTGAAACCTTT+TGG | + | chr5.4:18171942-18171961 | MS.gene070121:CDS | 35.0% |
! | GCAATGAAGTTTTCATATGC+TGG | - | chr5.4:18172223-18172242 | None:intergenic | 35.0% |
! | GTACCAACTTGAAACCTTTT+GGG | + | chr5.4:18171943-18171962 | MS.gene070121:CDS | 35.0% |
!! | ATCCTTGTTTACTGATTCGT+TGG | + | chr5.4:18171550-18171569 | MS.gene070121:CDS | 35.0% |
! | CATCCCAAAAGGTTTCAAGT+TGG | - | chr5.4:18171949-18171968 | None:intergenic | 40.0% |
! | GAGGATGTTGATTGTGTAAG+AGG | + | chr5.4:18172337-18172356 | MS.gene070121:CDS | 40.0% |
! | GCTAGGTTGCATGATTTTCA+CGG | + | chr5.4:18172241-18172260 | MS.gene070121:CDS | 40.0% |
! | TGGCAGCAACATGTTTTCTA+AGG | - | chr5.4:18172203-18172222 | None:intergenic | 40.0% |
! | TTTCTGGTCAAGGAAGAACT+TGG | + | chr5.4:18171742-18171761 | MS.gene070121:CDS | 40.0% |
!! | GTGTTTTTGACGAGCAACTA+AGG | + | chr5.4:18172161-18172180 | MS.gene070121:CDS | 40.0% |
!!! | CTTGAAACCTTTTGGGATGA+TGG | + | chr5.4:18171950-18171969 | MS.gene070121:CDS | 40.0% |
ACTCCATCAGCAACAACCAA+AGG | - | chr5.4:18171788-18171807 | None:intergenic | 45.0% | |
CAACAATCCAACTCTGCATC+GGG | - | chr5.4:18171662-18171681 | None:intergenic | 45.0% | |
CAGAAGTTTCGGGAGATATG+TGG | + | chr5.4:18172121-18172140 | MS.gene070121:CDS | 45.0% | |
CCAACAATCCAACTCTGCAT+CGG | - | chr5.4:18171663-18171682 | None:intergenic | 45.0% | |
CGATGCAGAGTTGGATTGTT+GGG | + | chr5.4:18171661-18171680 | MS.gene070121:CDS | 45.0% | |
CTCCATCAGCAACAACCAAA+GGG | - | chr5.4:18171787-18171806 | None:intergenic | 45.0% | |
GAAAGCCAAAACGATGTAGC+CGG | - | chr5.4:18171726-18171745 | None:intergenic | 45.0% | |
TACCCTTTGGTTGTTGCTGA+TGG | + | chr5.4:18171782-18171801 | MS.gene070121:CDS | 45.0% | |
TTGGTTGTTGCTGATGGAGT+AGG | + | chr5.4:18171788-18171807 | MS.gene070121:CDS | 45.0% | |
!!! | GCTACATCGTTTTGGCTTTC+TGG | + | chr5.4:18171726-18171745 | MS.gene070121:CDS | 45.0% |
!!! | TCGTTTTGGCTTTCTGGTCA+AGG | + | chr5.4:18171732-18171751 | MS.gene070121:CDS | 45.0% |
CCGATGCAGAGTTGGATTGT+TGG | + | chr5.4:18171660-18171679 | MS.gene070121:CDS | 50.0% | |
CCTATGACATGTGAAGCCAC+CGG | + | chr5.4:18171704-18171723 | MS.gene070121:CDS | 50.0% | |
GAGTTGGATTGTTGGGCTGA+TGG | + | chr5.4:18171668-18171687 | MS.gene070121:CDS | 50.0% | |
TCTTACACCCGATGCAGAGT+TGG | + | chr5.4:18171652-18171671 | MS.gene070121:CDS | 50.0% | |
TTGGATTGTTGGGCTGATGG+TGG | + | chr5.4:18171671-18171690 | MS.gene070121:CDS | 50.0% | |
AGCCAAAACGATGTAGCCGG+TGG | - | chr5.4:18171723-18171742 | None:intergenic | 55.0% | |
CCGGTGGCTTCACATGTCAT+AGG | - | chr5.4:18171707-18171726 | None:intergenic | 55.0% | |
!! | AGCCACCGGCTACATCGTTT+TGG | + | chr5.4:18171718-18171737 | MS.gene070121:CDS | 55.0% |
!! | GATTGTTGGGCTGATGGTGG+TGG | + | chr5.4:18171674-18171693 | MS.gene070121:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 18171524 | 18172387 | 18171524 | ID=MS.gene070121 |
chr5.4 | mRNA | 18171524 | 18172387 | 18171524 | ID=MS.gene070121.t1;Parent=MS.gene070121 |
chr5.4 | exon | 18171524 | 18172387 | 18171524 | ID=MS.gene070121.t1.exon1;Parent=MS.gene070121.t1 |
chr5.4 | CDS | 18171524 | 18172387 | 18171524 | ID=cds.MS.gene070121.t1;Parent=MS.gene070121.t1 |
Gene Sequence |
Protein sequence |