Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070201.t1 | XP_003602984.1 | 94.9 | 391 | 20 | 0 | 1 | 391 | 1 | 391 | 1.00E-209 | 739.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070201.t1 | Q9S7T8 | 50.4 | 389 | 185 | 4 | 5 | 387 | 4 | 390 | 7.4e-105 | 382.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070201.t1 | G7J5R9 | 94.9 | 391 | 20 | 0 | 1 | 391 | 1 | 391 | 7.2e-210 | 739.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070201 | MS.gene045585 | PPI |
| MS.gene070201 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene070201 | PPI |
| MS.gene031697 | MS.gene070201 | PPI |
| MS.gene065945 | MS.gene070201 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070201.t1 | MTR_3g101130 | 94.885 | 391 | 20 | 0 | 1 | 391 | 1 | 391 | 0.0 | 756 |
| MS.gene070201.t1 | MTR_3g101180 | 65.664 | 399 | 126 | 4 | 1 | 388 | 1 | 399 | 1.36e-179 | 505 |
| MS.gene070201.t1 | MTR_7g050750 | 64.359 | 390 | 134 | 2 | 5 | 389 | 7 | 396 | 5.21e-174 | 491 |
| MS.gene070201.t1 | MTR_8g461160 | 63.776 | 392 | 137 | 2 | 1 | 387 | 1 | 392 | 1.09e-173 | 490 |
| MS.gene070201.t1 | MTR_3g101010 | 64.010 | 389 | 133 | 3 | 5 | 389 | 4 | 389 | 1.84e-167 | 474 |
| MS.gene070201.t1 | MTR_3g101200 | 64.103 | 390 | 114 | 4 | 1 | 388 | 26 | 391 | 5.60e-167 | 473 |
| MS.gene070201.t1 | MTR_7g050810 | 62.821 | 390 | 138 | 3 | 6 | 389 | 16 | 404 | 6.70e-167 | 473 |
| MS.gene070201.t1 | MTR_3g018740 | 62.595 | 393 | 134 | 5 | 1 | 387 | 1 | 386 | 4.68e-165 | 468 |
| MS.gene070201.t1 | MTR_7g451890 | 61.183 | 389 | 146 | 2 | 6 | 389 | 14 | 402 | 2.78e-163 | 464 |
| MS.gene070201.t1 | MTR_4g045707 | 60.305 | 393 | 147 | 3 | 1 | 389 | 1 | 388 | 1.66e-161 | 459 |
| MS.gene070201.t1 | MTR_7g047780 | 60.668 | 389 | 148 | 2 | 6 | 389 | 14 | 402 | 2.30e-161 | 459 |
| MS.gene070201.t1 | MTR_8g027395 | 60.305 | 393 | 145 | 3 | 1 | 389 | 12 | 397 | 5.35e-159 | 452 |
| MS.gene070201.t1 | MTR_4g088525 | 63.361 | 363 | 124 | 3 | 30 | 388 | 11 | 368 | 4.59e-156 | 444 |
| MS.gene070201.t1 | MTR_3g101030 | 58.838 | 396 | 138 | 4 | 15 | 389 | 38 | 429 | 1.06e-155 | 446 |
| MS.gene070201.t1 | MTR_8g027420 | 58.779 | 393 | 140 | 4 | 1 | 389 | 1 | 375 | 1.44e-152 | 436 |
| MS.gene070201.t1 | MTR_2g046030 | 57.653 | 392 | 148 | 7 | 5 | 387 | 4 | 386 | 3.68e-147 | 422 |
| MS.gene070201.t1 | MTR_2g045980 | 57.143 | 392 | 150 | 6 | 5 | 387 | 4 | 386 | 1.38e-146 | 421 |
| MS.gene070201.t1 | MTR_3g048000 | 57.623 | 387 | 136 | 5 | 7 | 388 | 28 | 391 | 3.86e-146 | 420 |
| MS.gene070201.t1 | MTR_4g088535 | 55.980 | 393 | 145 | 6 | 1 | 388 | 1 | 370 | 1.09e-138 | 400 |
| MS.gene070201.t1 | MTR_3g101050 | 56.331 | 387 | 144 | 7 | 7 | 387 | 29 | 396 | 9.60e-137 | 396 |
| MS.gene070201.t1 | MTR_3g015620 | 55.784 | 389 | 139 | 6 | 6 | 387 | 16 | 378 | 2.45e-131 | 382 |
| MS.gene070201.t1 | MTR_3g102920 | 54.315 | 394 | 137 | 5 | 1 | 388 | 53 | 409 | 3.89e-130 | 380 |
| MS.gene070201.t1 | MTR_3g101190 | 52.617 | 363 | 104 | 4 | 31 | 389 | 14 | 312 | 4.94e-117 | 343 |
| MS.gene070201.t1 | MTR_3g100995 | 64.567 | 254 | 84 | 3 | 139 | 389 | 14 | 264 | 3.03e-113 | 332 |
| MS.gene070201.t1 | MTR_7g050830 | 54.459 | 314 | 112 | 2 | 6 | 299 | 16 | 318 | 2.02e-107 | 319 |
| MS.gene070201.t1 | MTR_3g015760 | 62.791 | 258 | 93 | 3 | 132 | 387 | 23 | 279 | 1.40e-98 | 295 |
| MS.gene070201.t1 | MTR_3g100010 | 49.051 | 316 | 113 | 3 | 31 | 313 | 40 | 340 | 1.52e-97 | 294 |
| MS.gene070201.t1 | MTR_3g018747 | 57.854 | 261 | 89 | 3 | 132 | 387 | 9 | 253 | 5.24e-96 | 287 |
| MS.gene070201.t1 | MTR_3g114310 | 41.995 | 381 | 196 | 10 | 28 | 389 | 36 | 410 | 4.30e-83 | 260 |
| MS.gene070201.t1 | MTR_3g111160 | 62.326 | 215 | 73 | 2 | 180 | 389 | 9 | 220 | 1.45e-82 | 251 |
| MS.gene070201.t1 | MTR_3g100520 | 57.399 | 223 | 75 | 3 | 173 | 389 | 1 | 209 | 5.01e-82 | 250 |
| MS.gene070201.t1 | MTR_3g101110 | 54.430 | 237 | 73 | 4 | 135 | 363 | 71 | 280 | 3.65e-75 | 235 |
| MS.gene070201.t1 | MTR_2g046410 | 59.615 | 208 | 71 | 4 | 189 | 387 | 144 | 347 | 1.42e-74 | 236 |
| MS.gene070201.t1 | MTR_3g099970 | 59.487 | 195 | 60 | 2 | 132 | 323 | 20 | 198 | 6.34e-74 | 229 |
| MS.gene070201.t1 | MTR_3g101150 | 64.557 | 158 | 49 | 2 | 238 | 388 | 1 | 158 | 1.24e-62 | 198 |
| MS.gene070201.t1 | MTR_3g101020 | 57.838 | 185 | 52 | 3 | 206 | 389 | 1 | 160 | 4.10e-62 | 197 |
| MS.gene070201.t1 | MTR_3g102870 | 56.688 | 157 | 64 | 1 | 195 | 347 | 1 | 157 | 1.18e-52 | 173 |
| MS.gene070201.t1 | MTR_3g111150 | 48.045 | 179 | 67 | 3 | 8 | 186 | 1 | 153 | 2.28e-47 | 159 |
| MS.gene070201.t1 | MTR_3g100990 | 62.791 | 129 | 46 | 1 | 4 | 132 | 3 | 129 | 2.87e-42 | 155 |
| MS.gene070201.t1 | MTR_3g101140 | 51.261 | 119 | 47 | 2 | 271 | 389 | 9 | 116 | 2.48e-28 | 107 |
| MS.gene070201.t1 | MTR_4g093550 | 51.648 | 91 | 42 | 1 | 1 | 91 | 1 | 89 | 6.12e-20 | 84.3 |
| MS.gene070201.t1 | MTR_6g046890 | 62.121 | 66 | 25 | 0 | 23 | 88 | 14 | 79 | 1.70e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070201.t1 | AT1G47710 | 50.386 | 389 | 185 | 4 | 5 | 387 | 4 | 390 | 7.19e-133 | 386 |
| MS.gene070201.t1 | AT1G47710 | 50.386 | 389 | 185 | 4 | 5 | 387 | 31 | 417 | 3.87e-132 | 385 |
| MS.gene070201.t1 | AT3G45220 | 43.909 | 394 | 200 | 5 | 6 | 386 | 5 | 390 | 1.70e-111 | 332 |
| MS.gene070201.t1 | AT2G25240 | 44.730 | 389 | 196 | 8 | 6 | 386 | 5 | 382 | 3.16e-108 | 323 |
| MS.gene070201.t1 | AT2G26390 | 42.092 | 392 | 206 | 6 | 6 | 386 | 5 | 386 | 1.03e-100 | 304 |
| MS.gene070201.t1 | AT1G62170 | 43.716 | 366 | 176 | 6 | 29 | 386 | 88 | 431 | 3.25e-96 | 294 |
| MS.gene070201.t1 | AT1G64030 | 43.005 | 386 | 198 | 6 | 5 | 386 | 4 | 371 | 7.40e-96 | 291 |
| MS.gene070201.t1 | AT2G14540 | 44.875 | 361 | 178 | 4 | 29 | 386 | 55 | 397 | 2.10e-93 | 286 |
| MS.gene070201.t1 | AT1G62170 | 40.100 | 399 | 176 | 7 | 29 | 386 | 88 | 464 | 2.65e-89 | 277 |
| MS.gene070201.t1 | AT2G35580 | 39.589 | 389 | 207 | 9 | 5 | 386 | 4 | 371 | 1.19e-85 | 265 |
| MS.gene070201.t1 | AT1G64010 | 47.222 | 216 | 91 | 5 | 173 | 386 | 1 | 195 | 3.48e-62 | 199 |
| MS.gene070201.t1 | AT1G64010 | 46.766 | 201 | 84 | 5 | 188 | 386 | 2 | 181 | 3.93e-55 | 180 |
| MS.gene070201.t1 | AT1G62160 | 42.211 | 199 | 86 | 5 | 195 | 386 | 42 | 218 | 1.71e-35 | 130 |
| MS.gene070201.t1 | AT1G63280 | 50.847 | 118 | 54 | 2 | 129 | 244 | 5 | 120 | 1.62e-32 | 119 |
| MS.gene070201.t1 | AT1G51330 | 44.643 | 112 | 59 | 2 | 130 | 238 | 29 | 140 | 6.48e-25 | 100 |
Find 74 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATGCACTATACTTTAA+AGG | 0.181731 | 3.2:+41621215 | MS.gene070201:CDS |
| CCACGTTTCAAAATTTATTC+TGG | 0.250552 | 3.2:+41621545 | MS.gene070201:CDS |
| ATATCGTTGCCTTTCTTATA+AGG | 0.269460 | 3.2:-41621383 | None:intergenic |
| TTCATTGAAGTAAATGAAAA+AGG | 0.281273 | 3.2:+41621683 | MS.gene070201:CDS |
| AAATGGCGAACTCTCCGATT+TGG | 0.294557 | 3.2:+41621636 | MS.gene070201:CDS |
| GGAAAAGAGGTGAGAGGATA+AGG | 0.329026 | 3.2:-41620839 | None:intergenic |
| AAGTGATAGTGGGTGACTTC+AGG | 0.357075 | 3.2:+41621519 | MS.gene070201:CDS |
| AATGGCGAACTCTCCGATTT+GGG | 0.362900 | 3.2:+41621637 | MS.gene070201:CDS |
| GGTCAGCTACAAAATCTATT+GGG | 0.367281 | 3.2:-41621772 | None:intergenic |
| AGTATCAACAATTTCTTTGA+AGG | 0.389170 | 3.2:-41620953 | None:intergenic |
| TCTAATGTGTCAAAGGAGTT+AGG | 0.389227 | 3.2:+41621578 | MS.gene070201:CDS |
| CGTCAGCTTCTCTCCTTCCT+TGG | 0.391854 | 3.2:+41620790 | MS.gene070201:CDS |
| ATTAGTGATGTTCTTTCACC+TGG | 0.400115 | 3.2:+41621161 | MS.gene070201:CDS |
| TGGTCAGCTACAAAATCTAT+TGG | 0.402096 | 3.2:-41621773 | None:intergenic |
| CTACTATGCTGAGCACAGTT+TGG | 0.403622 | 3.2:-41620741 | None:intergenic |
| TCTGGTACAATACTCTTTGT+TGG | 0.408824 | 3.2:+41621827 | MS.gene070201:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.420477 | 3.2:+41621374 | MS.gene070201:CDS |
| GTTAGCTTTGATTGAGAAAG+TGG | 0.425057 | 3.2:+41621454 | MS.gene070201:CDS |
| TCCACGTAAGGAAGTGATAG+TGG | 0.448188 | 3.2:+41621508 | MS.gene070201:CDS |
| CAACAAGAGGATTGAGCACT+TGG | 0.450565 | 3.2:-41621850 | None:intergenic |
| AGTTTGTGTTTCAAAATCTC+AGG | 0.451018 | 3.2:-41621485 | None:intergenic |
| CAAGTGCTCAATCCTCTTGT+TGG | 0.453144 | 3.2:+41621851 | MS.gene070201:CDS |
| TTGTGTCGGACCCTCGGAAC+CGG | 0.453396 | 3.2:-41620767 | None:intergenic |
| GTCACTAGAACCGGACTATC+GGG | 0.467305 | 3.2:+41621722 | MS.gene070201:CDS |
| TTGATAAGAGACGATTTGTC+TGG | 0.469705 | 3.2:+41621809 | MS.gene070201:CDS |
| GCTGCTGCAGTCACTAGAAC+CGG | 0.471427 | 3.2:+41621713 | MS.gene070201:CDS |
| CAACAATTTCTTTGAAGGAA+GGG | 0.472215 | 3.2:-41620948 | None:intergenic |
| TTAAATTAGCGATTGATTCG+CGG | 0.473914 | 3.2:-41620633 | None:intergenic |
| AACAATCCATCTCTTGCATC+GGG | 0.475826 | 3.2:-41621434 | None:intergenic |
| GTCAAACCTCCATCAGAGAA+AGG | 0.475976 | 3.2:-41621611 | None:intergenic |
| GTGTTTCAAAATCTCAGGTT+TGG | 0.477894 | 3.2:-41621480 | None:intergenic |
| TCAACAATTTCTTTGAAGGA+AGG | 0.480156 | 3.2:-41620949 | None:intergenic |
| TCTCGGTGGCAGCTCAATCA+AGG | 0.492253 | 3.2:+41621292 | MS.gene070201:CDS |
| CATAGTAGCTGCCGGTTCCG+AGG | 0.494572 | 3.2:+41620756 | MS.gene070201:CDS |
| TGAAGGAAGGGTAAACAGAA+AGG | 0.497719 | 3.2:-41620936 | None:intergenic |
| GAAGGAAGGGTAAACAGAAA+GGG | 0.500206 | 3.2:-41620935 | None:intergenic |
| GAGAGGATAAGGAGTTGAGA+TGG | 0.502008 | 3.2:-41620828 | None:intergenic |
| AGACAACTGTGGACCACCAT+AGG | 0.503886 | 3.2:-41620884 | None:intergenic |
| TAAGGAGTTGAGATGGTCAA+TGG | 0.510048 | 3.2:-41620821 | None:intergenic |
| TGAACTTTCTAATGTGTCAA+AGG | 0.513651 | 3.2:+41621571 | MS.gene070201:CDS |
| AGTCACTAGAACCGGACTAT+CGG | 0.529335 | 3.2:+41621721 | MS.gene070201:CDS |
| TAACAATCCATCTCTTGCAT+CGG | 0.531098 | 3.2:-41621435 | None:intergenic |
| TTTCTTCCCGATGCAAGAGA+TGG | 0.534096 | 3.2:+41621428 | MS.gene070201:CDS |
| GAAACACAAACTTCCACGTA+AGG | 0.535930 | 3.2:+41621496 | MS.gene070201:CDS |
| CTAGACGACGCTGCTCCCTA+TGG | 0.544397 | 3.2:+41620868 | MS.gene070201:CDS |
| ACGACCACATCCCGATAGTC+CGG | 0.550933 | 3.2:-41621732 | None:intergenic |
| AATATGTTAGAAACCCAAAT+CGG | 0.552609 | 3.2:-41621650 | None:intergenic |
| ATAGTAGCTGCCGGTTCCGA+GGG | 0.555454 | 3.2:+41620757 | MS.gene070201:CDS |
| CTGACGTTGTGTCGGACCCT+CGG | 0.555565 | 3.2:-41620773 | None:intergenic |
| CGTCTAGCACAGAGGAAAAG+AGG | 0.559719 | 3.2:-41620852 | None:intergenic |
| CCCACTATCACTTCCTTACG+TGG | 0.567927 | 3.2:-41621509 | None:intergenic |
| GTGCTCAGCATAGTAGCTGC+CGG | 0.569522 | 3.2:+41620748 | MS.gene070201:CDS |
| CACTATACTTTAAAGGAGCA+TGG | 0.570932 | 3.2:+41621222 | MS.gene070201:CDS |
| GCTACAAAATCTATTGGGGT+AGG | 0.573723 | 3.2:-41621767 | None:intergenic |
| TGATTGAGCTGCCACCGAGA+AGG | 0.604903 | 3.2:-41621289 | None:intergenic |
| GACAACTGTGGACCACCATA+GGG | 0.607442 | 3.2:-41620883 | None:intergenic |
| ATTGGGGTAGGAATTGAAGT+AGG | 0.613469 | 3.2:-41621755 | None:intergenic |
| CTTTCTTATAAGGAAGACGA+AGG | 0.614295 | 3.2:-41621373 | None:intergenic |
| GAGAGAAGCTGACGTTGTGT+CGG | 0.614776 | 3.2:-41620781 | None:intergenic |
| ATCACTTGATTTCATAAACA+AGG | 0.616736 | 3.2:+41620996 | MS.gene070201:CDS |
| GTTAAGCTATTAATTGACCC+AGG | 0.618787 | 3.2:-41621179 | None:intergenic |
| AGCAGCGTCGTCTAGCACAG+AGG | 0.630122 | 3.2:-41620860 | None:intergenic |
| CACAGAGGAAAAGAGGTGAG+AGG | 0.632829 | 3.2:-41620845 | None:intergenic |
| CCACGTAAGGAAGTGATAGT+GGG | 0.633032 | 3.2:+41621509 | MS.gene070201:CDS |
| AGCACAGTTTGGAGTGACAA+CGG | 0.634618 | 3.2:-41620730 | None:intergenic |
| AGAACCGGACTATCGGGATG+TGG | 0.637796 | 3.2:+41621728 | MS.gene070201:CDS |
| TTAGTGATGTTCTTTCACCT+GGG | 0.638192 | 3.2:+41621162 | MS.gene070201:CDS |
| GAAATCAAGTGATCTGAGAG+TGG | 0.639757 | 3.2:-41620986 | None:intergenic |
| GACGACGCTGCTCCCTATGG+TGG | 0.640142 | 3.2:+41620871 | MS.gene070201:CDS |
| CACCGAGAAGGTGAAAATCA+CGG | 0.643065 | 3.2:-41621277 | None:intergenic |
| GTCAGCTACAAAATCTATTG+GGG | 0.649276 | 3.2:-41621771 | None:intergenic |
| AATTATGATCTACCAACAAG+AGG | 0.656976 | 3.2:-41621863 | None:intergenic |
| AATTAGCGATTGATTCGCGG+TGG | 0.680650 | 3.2:-41620630 | None:intergenic |
| GAGTTGACAAAAGACAACTG+TGG | 0.761019 | 3.2:-41620895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGGAAAATATATAT+AGG | - | chr3.2:41621024-41621043 | None:intergenic | 15.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.2:41621683-41621702 | MS.gene070201:CDS | 20.0% |
| !!! | TTTTACTGTTCAAAAAAAGA+AGG | - | chr3.2:41621038-41621057 | None:intergenic | 20.0% |
| ! | AATATGTTAGAAACCCAAAT+CGG | - | chr3.2:41621653-41621672 | None:intergenic | 25.0% |
| ! | AGTATCAACAATTTCTTTGA+AGG | - | chr3.2:41620956-41620975 | None:intergenic | 25.0% |
| ! | ATCACTTGATTTCATAAACA+AGG | + | chr3.2:41620996-41621015 | MS.gene070201:CDS | 25.0% |
| ! | CTCTTATCAAAAACATGAAA+GGG | - | chr3.2:41621799-41621818 | None:intergenic | 25.0% |
| ! | GTTAATGCACTATACTTTAA+AGG | + | chr3.2:41621215-41621234 | MS.gene070201:CDS | 25.0% |
| ! | TCTCTTATCAAAAACATGAA+AGG | - | chr3.2:41621800-41621819 | None:intergenic | 25.0% |
| !! | CAGTTTATAAATGCTTTTGA+CGG | + | chr3.2:41621341-41621360 | MS.gene070201:CDS | 25.0% |
| !!! | TGTTTTTGATAGCAAATGTT+TGG | - | chr3.2:41620680-41620699 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGAAGCATCAAA+TGG | - | chr3.2:41621254-41621273 | None:intergenic | 25.0% |
| AGTTTGTGTTTCAAAATCTC+AGG | - | chr3.2:41621488-41621507 | None:intergenic | 30.0% | |
| ATATCGTTGCCTTTCTTATA+AGG | - | chr3.2:41621386-41621405 | None:intergenic | 30.0% | |
| CCACGTTTCAAAATTTATTC+TGG | + | chr3.2:41621545-41621564 | MS.gene070201:CDS | 30.0% | |
| CGTCAAAAAAGTGAATGTAT+GGG | + | chr3.2:41621115-41621134 | MS.gene070201:CDS | 30.0% | |
| TATATTTGATGCTGTCGTAA+AGG | + | chr3.2:41621082-41621101 | MS.gene070201:intron | 30.0% | |
| TGAACTTTCTAATGTGTCAA+AGG | + | chr3.2:41621571-41621590 | MS.gene070201:CDS | 30.0% | |
| TTATCAAAAACATGAAAGGG+TGG | - | chr3.2:41621796-41621815 | None:intergenic | 30.0% | |
| ! | CAACAATTTCTTTGAAGGAA+GGG | - | chr3.2:41620951-41620970 | None:intergenic | 30.0% |
| ! | TCAACAATTTCTTTGAAGGA+AGG | - | chr3.2:41620952-41620971 | None:intergenic | 30.0% |
| ! | TTCTTTTTGCTAGTCATGAA+GGG | - | chr3.2:41621320-41621339 | None:intergenic | 30.0% |
| !! | TTAAATTAGCGATTGATTCG+CGG | - | chr3.2:41620636-41620655 | None:intergenic | 30.0% |
| !!! | CCAGAATAAATTTTGAAACG+TGG | - | chr3.2:41621548-41621567 | None:intergenic | 30.0% |
| !!! | CCATACATTCACTTTTTTGA+CGG | - | chr3.2:41621117-41621136 | None:intergenic | 30.0% |
| ATTAGTGATGTTCTTTCACC+TGG | + | chr3.2:41621161-41621180 | MS.gene070201:CDS | 35.0% | |
| CCGTCAAAAAAGTGAATGTA+TGG | + | chr3.2:41621114-41621133 | MS.gene070201:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.2:41621374-41621393 | MS.gene070201:CDS | 35.0% | |
| CTTTCTTATAAGGAAGACGA+AGG | - | chr3.2:41621376-41621395 | None:intergenic | 35.0% | |
| GGTCAGCTACAAAATCTATT+GGG | - | chr3.2:41621775-41621794 | None:intergenic | 35.0% | |
| GTCAGCTACAAAATCTATTG+GGG | - | chr3.2:41621774-41621793 | None:intergenic | 35.0% | |
| GTGTTTCAAAATCTCAGGTT+TGG | - | chr3.2:41621483-41621502 | None:intergenic | 35.0% | |
| GTTAAGCTATTAATTGACCC+AGG | - | chr3.2:41621182-41621201 | None:intergenic | 35.0% | |
| TAACAATCCATCTCTTGCAT+CGG | - | chr3.2:41621438-41621457 | None:intergenic | 35.0% | |
| TCTAATGTGTCAAAGGAGTT+AGG | + | chr3.2:41621578-41621597 | MS.gene070201:CDS | 35.0% | |
| TCTGGTACAATACTCTTTGT+TGG | + | chr3.2:41621827-41621846 | MS.gene070201:CDS | 35.0% | |
| TGATGGAGGTTTGACAAAAA+TGG | + | chr3.2:41621619-41621638 | MS.gene070201:CDS | 35.0% | |
| TGGGCTAAAAAAGAGACAAA+CGG | + | chr3.2:41621134-41621153 | MS.gene070201:CDS | 35.0% | |
| TGGTCAGCTACAAAATCTAT+TGG | - | chr3.2:41621776-41621795 | None:intergenic | 35.0% | |
| TTAGTGATGTTCTTTCACCT+GGG | + | chr3.2:41621162-41621181 | MS.gene070201:CDS | 35.0% | |
| TTGATAAGAGACGATTTGTC+TGG | + | chr3.2:41621809-41621828 | MS.gene070201:CDS | 35.0% | |
| ! | CACTATACTTTAAAGGAGCA+TGG | + | chr3.2:41621222-41621241 | MS.gene070201:CDS | 35.0% |
| ! | CTTCTTTTTGCTAGTCATGA+AGG | - | chr3.2:41621321-41621340 | None:intergenic | 35.0% |
| ! | TGTCTTTTGTCAACTCTGTT+TGG | + | chr3.2:41620902-41620921 | MS.gene070201:CDS | 35.0% |
| !! | AATGGATTTTGATCCAAGGA+AGG | - | chr3.2:41620806-41620825 | None:intergenic | 35.0% |
| !! | GTTAGCTTTGATTGAGAAAG+TGG | + | chr3.2:41621454-41621473 | MS.gene070201:CDS | 35.0% |
| !! | GTTGTTTTACCTTTCTCTGA+TGG | + | chr3.2:41621602-41621621 | MS.gene070201:CDS | 35.0% |
| AACAATCCATCTCTTGCATC+GGG | - | chr3.2:41621437-41621456 | None:intergenic | 40.0% | |
| ATTGGGGTAGGAATTGAAGT+AGG | - | chr3.2:41621758-41621777 | None:intergenic | 40.0% | |
| GAAACACAAACTTCCACGTA+AGG | + | chr3.2:41621496-41621515 | MS.gene070201:CDS | 40.0% | |
| GAAATCAAGTGATCTGAGAG+TGG | - | chr3.2:41620989-41621008 | None:intergenic | 40.0% | |
| GAAGGAAGGGTAAACAGAAA+GGG | - | chr3.2:41620938-41620957 | None:intergenic | 40.0% | |
| GAGTTGACAAAAGACAACTG+TGG | - | chr3.2:41620898-41620917 | None:intergenic | 40.0% | |
| GCTACAAAATCTATTGGGGT+AGG | - | chr3.2:41621770-41621789 | None:intergenic | 40.0% | |
| TAAGGAGTTGAGATGGTCAA+TGG | - | chr3.2:41620824-41620843 | None:intergenic | 40.0% | |
| TGAAGGAAGGGTAAACAGAA+AGG | - | chr3.2:41620939-41620958 | None:intergenic | 40.0% | |
| ! | GTTTTACCTTTCTCTGATGG+AGG | + | chr3.2:41621605-41621624 | MS.gene070201:CDS | 40.0% |
| !! | GGTCAATGGATTTTGATCCA+AGG | - | chr3.2:41620810-41620829 | None:intergenic | 40.0% |
| AAATGGCGAACTCTCCGATT+TGG | + | chr3.2:41621636-41621655 | MS.gene070201:CDS | 45.0% | |
| AATGGCGAACTCTCCGATTT+GGG | + | chr3.2:41621637-41621656 | MS.gene070201:CDS | 45.0% | |
| AGTCACTAGAACCGGACTAT+CGG | + | chr3.2:41621721-41621740 | MS.gene070201:CDS | 45.0% | |
| CAACAAGAGGATTGAGCACT+TGG | - | chr3.2:41621853-41621872 | None:intergenic | 45.0% | |
| CAAGTGCTCAATCCTCTTGT+TGG | + | chr3.2:41621851-41621870 | MS.gene070201:CDS | 45.0% | |
| CACCGAGAAGGTGAAAATCA+CGG | - | chr3.2:41621280-41621299 | None:intergenic | 45.0% | |
| CCACGTAAGGAAGTGATAGT+GGG | + | chr3.2:41621509-41621528 | MS.gene070201:CDS | 45.0% | |
| CTACTATGCTGAGCACAGTT+TGG | - | chr3.2:41620744-41620763 | None:intergenic | 45.0% | |
| GAGAGGATAAGGAGTTGAGA+TGG | - | chr3.2:41620831-41620850 | None:intergenic | 45.0% | |
| GGAAAAGAGGTGAGAGGATA+AGG | - | chr3.2:41620842-41620861 | None:intergenic | 45.0% | |
| GTCAAACCTCCATCAGAGAA+AGG | - | chr3.2:41621614-41621633 | None:intergenic | 45.0% | |
| TCCACGTAAGGAAGTGATAG+TGG | + | chr3.2:41621508-41621527 | MS.gene070201:CDS | 45.0% | |
| TTTCTTCCCGATGCAAGAGA+TGG | + | chr3.2:41621428-41621447 | MS.gene070201:CDS | 45.0% | |
| ! | AGCACAGTTTGGAGTGACAA+CGG | - | chr3.2:41620733-41620752 | None:intergenic | 45.0% |
| ! | GACCGTGATTTTCACCTTCT+CGG | + | chr3.2:41621275-41621294 | MS.gene070201:CDS | 45.0% |
| !! | AAGTGATAGTGGGTGACTTC+AGG | + | chr3.2:41621519-41621538 | MS.gene070201:CDS | 45.0% |
| !! | AATTAGCGATTGATTCGCGG+TGG | - | chr3.2:41620633-41620652 | None:intergenic | 45.0% |
| !! | ATCAAATATAAAATTATATT+AGG | - | chr3.2:41621072-41621091 | None:intergenic | 5.0% |
| AGACAACTGTGGACCACCAT+AGG | - | chr3.2:41620887-41620906 | None:intergenic | 50.0% | |
| CACAGAGGAAAAGAGGTGAG+AGG | - | chr3.2:41620848-41620867 | None:intergenic | 50.0% | |
| CCCACTATCACTTCCTTACG+TGG | - | chr3.2:41621512-41621531 | None:intergenic | 50.0% | |
| CGTCTAGCACAGAGGAAAAG+AGG | - | chr3.2:41620855-41620874 | None:intergenic | 50.0% | |
| GACAACTGTGGACCACCATA+GGG | - | chr3.2:41620886-41620905 | None:intergenic | 50.0% | |
| GAGAGAAGCTGACGTTGTGT+CGG | - | chr3.2:41620784-41620803 | None:intergenic | 50.0% | |
| GTCACTAGAACCGGACTATC+GGG | + | chr3.2:41621722-41621741 | MS.gene070201:CDS | 50.0% | |
| ! | CGTGATTTTCACCTTCTCGG+TGG | + | chr3.2:41621278-41621297 | MS.gene070201:CDS | 50.0% |
| ACGACCACATCCCGATAGTC+CGG | - | chr3.2:41621735-41621754 | None:intergenic | 55.0% | |
| AGAACCGGACTATCGGGATG+TGG | + | chr3.2:41621728-41621747 | MS.gene070201:CDS | 55.0% | |
| CGTCAGCTTCTCTCCTTCCT+TGG | + | chr3.2:41620790-41620809 | MS.gene070201:CDS | 55.0% | |
| GCTGCTGCAGTCACTAGAAC+CGG | + | chr3.2:41621713-41621732 | MS.gene070201:CDS | 55.0% | |
| GTGCTCAGCATAGTAGCTGC+CGG | + | chr3.2:41620748-41620767 | MS.gene070201:CDS | 55.0% | |
| TCTCGGTGGCAGCTCAATCA+AGG | + | chr3.2:41621292-41621311 | MS.gene070201:CDS | 55.0% | |
| TGATTGAGCTGCCACCGAGA+AGG | - | chr3.2:41621292-41621311 | None:intergenic | 55.0% | |
| !! | ATAGTAGCTGCCGGTTCCGA+GGG | + | chr3.2:41620757-41620776 | MS.gene070201:CDS | 55.0% |
| AGCAGCGTCGTCTAGCACAG+AGG | - | chr3.2:41620863-41620882 | None:intergenic | 60.0% | |
| CTAGACGACGCTGCTCCCTA+TGG | + | chr3.2:41620868-41620887 | MS.gene070201:CDS | 60.0% | |
| CTGACGTTGTGTCGGACCCT+CGG | - | chr3.2:41620776-41620795 | None:intergenic | 60.0% | |
| TTGTGTCGGACCCTCGGAAC+CGG | - | chr3.2:41620770-41620789 | None:intergenic | 60.0% | |
| !! | CATAGTAGCTGCCGGTTCCG+AGG | + | chr3.2:41620756-41620775 | MS.gene070201:CDS | 60.0% |
| GACGACGCTGCTCCCTATGG+TGG | + | chr3.2:41620871-41620890 | MS.gene070201:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 41620622 | 41621883 | 41620622 | ID=MS.gene070201 |
| chr3.2 | mRNA | 41620622 | 41621883 | 41620622 | ID=MS.gene070201.t1;Parent=MS.gene070201 |
| chr3.2 | exon | 41620622 | 41621017 | 41620622 | ID=MS.gene070201.t1.exon1;Parent=MS.gene070201.t1 |
| chr3.2 | CDS | 41620622 | 41621017 | 41620622 | ID=cds.MS.gene070201.t1;Parent=MS.gene070201.t1 |
| chr3.2 | exon | 41621104 | 41621883 | 41621104 | ID=MS.gene070201.t1.exon2;Parent=MS.gene070201.t1 |
| chr3.2 | CDS | 41621104 | 41621883 | 41621104 | ID=cds.MS.gene070201.t1;Parent=MS.gene070201.t1 |
| Gene Sequence |
| Protein sequence |
