AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070202.t1 MTR_4g045707 88.265 392 42 3 1 392 1 388 0.0 685
MS.gene070202.t1 MTR_3g101010 72.123 391 101 4 5 392 4 389 0.0 530
MS.gene070202.t1 MTR_3g018740 68.217 387 118 4 5 390 4 386 0.0 510
MS.gene070202.t1 MTR_3g048000 64.844 384 114 2 7 390 28 390 1.12e-177 500
MS.gene070202.t1 MTR_8g027395 65.891 387 126 3 6 392 17 397 6.70e-176 496
MS.gene070202.t1 MTR_3g101030 65.450 411 115 9 4 392 24 429 2.78e-175 495
MS.gene070202.t1 MTR_2g046030 63.590 390 131 5 5 390 4 386 1.04e-166 472
MS.gene070202.t1 MTR_8g461160 62.907 399 132 6 1 390 1 392 4.41e-166 471
MS.gene070202.t1 MTR_2g045980 64.103 390 129 5 5 390 4 386 1.49e-165 469
MS.gene070202.t1 MTR_3g101180 61.404 399 144 5 1 390 1 398 3.97e-165 468
MS.gene070202.t1 MTR_4g088525 65.395 367 121 4 25 391 8 368 4.75e-164 464
MS.gene070202.t1 MTR_7g050750 61.735 392 144 4 5 392 7 396 1.76e-163 464
MS.gene070202.t1 MTR_8g027420 61.735 392 133 4 1 392 1 375 5.78e-163 462
MS.gene070202.t1 MTR_7g451890 60.870 391 147 4 6 392 14 402 4.03e-161 458
MS.gene070202.t1 MTR_7g047780 61.381 391 145 4 6 392 14 402 1.14e-159 455
MS.gene070202.t1 MTR_3g101130 59.848 396 148 6 1 392 1 389 2.32e-157 448
MS.gene070202.t1 MTR_7g050810 59.796 393 148 5 6 392 16 404 3.54e-154 441
MS.gene070202.t1 MTR_4g088535 60.417 384 130 5 4 387 5 366 9.93e-153 436
MS.gene070202.t1 MTR_3g101050 60.957 397 124 8 3 391 24 397 5.68e-148 425
MS.gene070202.t1 MTR_3g015620 59.383 389 128 6 6 390 16 378 4.83e-141 407
MS.gene070202.t1 MTR_3g102920 57.033 391 126 7 4 390 56 408 8.98e-136 394
MS.gene070202.t1 MTR_3g101200 55.923 363 131 6 30 390 55 390 2.19e-125 367
MS.gene070202.t1 MTR_3g101190 51.233 365 113 4 28 392 13 312 1.41e-117 344
MS.gene070202.t1 MTR_3g100995 67.181 259 80 4 134 392 11 264 1.68e-116 340
MS.gene070202.t1 MTR_3g018747 64.885 262 74 5 130 390 9 253 5.44e-107 315
MS.gene070202.t1 MTR_3g100010 55.096 314 91 4 31 311 42 338 7.12e-104 310
MS.gene070202.t1 MTR_7g050830 52.681 317 115 5 6 300 16 319 3.59e-101 303
MS.gene070202.t1 MTR_3g015760 60.741 270 100 4 122 390 15 279 1.98e-98 294
MS.gene070202.t1 MTR_3g100520 61.883 223 70 3 171 392 1 209 1.04e-88 267
MS.gene070202.t1 MTR_3g111160 66.964 224 68 6 171 392 1 220 1.54e-87 264
MS.gene070202.t1 MTR_2g046410 66.827 208 61 4 187 390 144 347 3.61e-87 268
MS.gene070202.t1 MTR_3g114310 40.863 394 212 9 12 392 25 410 9.08e-86 267
MS.gene070202.t1 MTR_3g099970 65.657 198 49 4 130 327 20 198 6.58e-82 249
MS.gene070202.t1 MTR_3g101110 52.282 241 83 6 130 366 68 280 1.29e-69 221
MS.gene070202.t1 MTR_3g101150 65.190 158 50 3 237 390 1 157 2.75e-61 195
MS.gene070202.t1 MTR_3g111150 56.497 177 53 1 8 184 1 153 9.30e-60 191
MS.gene070202.t1 MTR_3g101020 56.614 189 53 4 204 392 1 160 7.19e-58 186
MS.gene070202.t1 MTR_3g102870 61.783 157 58 2 193 349 1 155 1.93e-57 186
MS.gene070202.t1 MTR_3g100990 62.595 131 49 0 4 134 3 133 1.54e-46 166
MS.gene070202.t1 MTR_4g093550 63.095 84 31 0 6 89 6 89 2.22e-28 107
MS.gene070202.t1 MTR_3g101140 64.286 70 22 2 325 392 48 116 3.20e-20 85.9
MS.gene070202.t1 MTR_6g046890 57.143 84 33 1 14 97 7 87 1.44e-19 84.7
MS.gene070202.t1 MTR_3g101080 92.857 28 2 0 355 382 12 39 8.15e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070202.t1 AT1G47710 53.470 389 176 5 5 390 4 390 1.60e-142 411
MS.gene070202.t1 AT1G47710 53.470 389 176 5 5 390 31 417 7.35e-142 410
MS.gene070202.t1 AT2G25240 47.570 391 185 9 6 389 5 382 2.10e-117 347
MS.gene070202.t1 AT3G45220 45.226 398 192 7 6 389 5 390 2.42e-116 344
MS.gene070202.t1 AT2G26390 44.612 399 189 10 6 389 5 386 2.86e-107 321
MS.gene070202.t1 AT1G62170 43.112 392 193 6 6 391 66 433 3.53e-102 309
MS.gene070202.t1 AT1G64030 43.223 391 193 8 5 389 4 371 1.09e-97 296
MS.gene070202.t1 AT2G14540 43.959 389 191 7 5 389 32 397 6.38e-97 295
MS.gene070202.t1 AT1G62170 40.000 425 192 7 6 391 66 466 3.10e-95 293
MS.gene070202.t1 AT2G35580 43.280 372 179 9 27 389 23 371 2.00e-90 277
MS.gene070202.t1 AT1G64010 49.772 219 86 5 171 389 1 195 1.67e-64 204
MS.gene070202.t1 AT1G64010 49.020 204 80 5 186 389 2 181 9.95e-57 184
MS.gene070202.t1 AT1G62160 39.423 208 88 6 193 391 42 220 1.64e-33 125
MS.gene070202.t1 AT1G63280 53.043 115 51 2 130 243 8 120 3.61e-32 118
MS.gene070202.t1 AT1G51330 50.893 112 51 3 129 237 30 140 2.59e-26 104
MS.gene070202.t1 AT1G64020 36.441 118 68 4 7 120 6 120 2.67e-16 75.1

Find 99 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGTTCAATATCTCATT+TGG 0.243686 3.2:-41612163 MS.gene070202:CDS
GTTGAATAACTCCTTTAATA+AGG 0.260616 3.2:+41612557 None:intergenic
CAGTGCCTTCTTCGTTTACT+TGG 0.271310 3.2:+41612008 None:intergenic
GAGACAAATGGCCTTATTAA+AGG 0.273581 3.2:-41612568 MS.gene070202:CDS
TTACTTGGATAAAAGACTTT+TGG 0.279450 3.2:+41612023 None:intergenic
AATCAGAAGAAACGATCTTT+TGG 0.302672 3.2:+41612992 None:intergenic
CAGGTGCTCAATCCTCTTGC+TGG 0.322054 3.2:-41611848 MS.gene070202:CDS
ACATATTACATACCTTGTTC+TGG 0.328120 3.2:+41612941 None:intergenic
CCTCGCCTCTCTGTCGCTAA+TGG 0.342690 3.2:-41613054 MS.gene070202:CDS
TCCCGGAGGTTTGACTAAAA+TGG 0.356212 3.2:-41612089 MS.gene070202:CDS
TAATAATGGCCTAGTTTATA+AGG 0.358860 3.2:+41612331 None:intergenic
AGAATTGACGGTCATAATAA+TGG 0.381177 3.2:+41612317 None:intergenic
ACCGGCACAATCCTCTTTGT+TGG 0.389726 3.2:-41611872 MS.gene070202:CDS
AACCCATGAATTGACTTCAT+TGG 0.393781 3.2:+41612597 None:intergenic
CACAATCCTCTTTGTTGGAC+AGG 0.397313 3.2:-41611867 MS.gene070202:CDS
CAAGGTTCAATATCTCATTT+GGG 0.405007 3.2:-41612162 MS.gene070202:CDS
TTTGAGTGAAACGTTGGTTC+GGG 0.409970 3.2:+41613293 None:intergenic
GAGAGTCCATCTTTCGCATC+TGG 0.410672 3.2:+41612277 None:intergenic
CTTCAACTTCCTTATAAACT+AGG 0.412556 3.2:-41612340 MS.gene070202:CDS
CCCTCTACTTCAAAGGAGTA+TGG 0.413172 3.2:-41612492 MS.gene070202:CDS
AAAATGGTGGACTCACTTGC+CGG 0.418030 3.2:-41612073 MS.gene070202:CDS
GAAAGATGGACTCTCAGATT+TGG 0.427558 3.2:-41612269 MS.gene070202:CDS
GACAGAGAGGCGAGGCCCGC+CGG 0.436040 3.2:+41613062 None:intergenic
TGAAAACACAATGTTGTTGT+TGG 0.440981 3.2:+41613242 None:intergenic
GAAATCAACGGAAGCCAACT+TGG 0.444733 3.2:+41612963 None:intergenic
GATCGATTGATTTGAAACTA+AGG 0.453659 3.2:+41613142 None:intergenic
TGACCAATGAAGTCAATTCA+TGG 0.453988 3.2:-41612600 MS.gene070202:CDS
ATTCTTCCAGATGCGAAAGA+TGG 0.456862 3.2:-41612283 MS.gene070202:CDS
CGGAGGGAGCAGCGTCTTTG+AGG 0.458037 3.2:+41613082 None:intergenic
TCTATTTCACAAGTTAAAGT+AGG 0.458733 3.2:-41612199 MS.gene070202:CDS
CTCTGTCGCTAATGGTGTGT+GGG 0.461547 3.2:-41613046 MS.gene070202:CDS
CAACGGAAGCCAACTTGGCT+TGG 0.461840 3.2:+41612968 None:intergenic
CATCATCGCTGCCGGCTCTG+AGG 0.467291 3.2:-41613193 MS.gene070202:CDS
AGAAACAAACAGGTCTTGAC+CGG 0.477188 3.2:+41612054 None:intergenic
TTGTTTAGAGAAGAGATGTT+GGG 0.479897 3.2:+41613266 None:intergenic
TTTATCCAAGTAAACGAAGA+AGG 0.480744 3.2:-41612013 MS.gene070202:CDS
TCTCTTATTAGAAATAAGAA+TGG 0.482752 3.2:+41611902 None:intergenic
TAAAGTACATAGAGAATTGA+CGG 0.488589 3.2:+41612305 None:intergenic
ATCATCGCTGCCGGCTCTGA+GGG 0.489637 3.2:-41613192 MS.gene070202:CDS
GTCAAACCTCCGGGATAGAA+AGG 0.493031 3.2:+41612097 None:intergenic
CTCAAAGACGCTGCTCCCTC+CGG 0.493872 3.2:-41613081 MS.gene070202:CDS
TCTCAATGGCAGCTCAATCA+AGG 0.494273 3.2:-41612422 MS.gene070202:CDS
GTTAAGCTGTTGACCACCCC+TGG 0.494814 3.2:+41612535 None:intergenic
CTCTTATTAGAAATAAGAAT+GGG 0.494945 3.2:+41611903 None:intergenic
ATTGTTTAGAGAAGAGATGT+TGG 0.505542 3.2:+41613265 None:intergenic
TCCTTTCATGACCAGCATGA+AGG 0.520615 3.2:-41612398 MS.gene070202:CDS
CTGTGTGGTACCCTCAGAGC+CGG 0.522370 3.2:+41613182 None:intergenic
AAGACGCTGCTCCCTCCGGC+GGG 0.522698 3.2:-41613077 MS.gene070202:CDS
CTAATAAGAGAAGATTTGAC+CGG 0.523302 3.2:-41611890 MS.gene070202:CDS
TTGAAGTACTTTAAAACCAT+CGG 0.525939 3.2:+41612357 None:intergenic
GAAGCTGCTGCTGCTACCTA+TGG 0.527503 3.2:-41611986 MS.gene070202:CDS
CTATGGTACTTTGACAGCCA+TGG 0.529449 3.2:-41611969 MS.gene070202:CDS
AAAGACGCTGCTCCCTCCGG+CGG 0.530193 3.2:-41613078 MS.gene070202:CDS
CAATATATTCGTGCTTCCGA+TGG 0.530199 3.2:-41612373 MS.gene070202:CDS
TTCTGATTTCCAAGCCAAGT+TGG 0.531191 3.2:-41612977 MS.gene070202:CDS
ATTCTCAGCATCATCGCTGC+CGG 0.533521 3.2:-41613201 MS.gene070202:CDS
AGAAAGGTAAAACCACTCCT+AGG 0.543661 3.2:+41612113 None:intergenic
AGAAACGATGCGAGAGGTGA+CGG 0.548056 3.2:+41613110 None:intergenic
GCTAATGCCCTCTACTTCAA+AGG 0.549267 3.2:-41612499 MS.gene070202:CDS
TTCCGTTGATTTCCAGAACA+AGG 0.549589 3.2:-41612953 MS.gene070202:intron
ACCATACTCCTTTGAAGTAG+AGG 0.553367 3.2:+41612491 None:intergenic
ACAAAGTCTAGTCGAGGACG+AGG 0.560984 3.2:+41611935 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.561778 3.2:-41611847 MS.gene070202:CDS
GACCAATGAAGTCAATTCAT+GGG 0.562924 3.2:-41612599 MS.gene070202:CDS
CCAAATGAGATATTGAACCT+TGG 0.563895 3.2:+41612163 None:intergenic
ATTAAAGGAGTTATTCAACC+AGG 0.564407 3.2:-41612553 MS.gene070202:CDS
TCCTTCATGCTGGTCATGAA+AGG 0.565992 3.2:+41612397 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.568879 3.2:-41612137 MS.gene070202:CDS
CATGGCTGTCAAAGTACCAT+AGG 0.573062 3.2:+41611970 None:intergenic
AATATATTGATCCTTCATGC+TGG 0.580830 3.2:+41612387 None:intergenic
TCTCTGTCGCTAATGGTGTG+TGG 0.581743 3.2:-41613047 MS.gene070202:CDS
CCATACTCCTTTGAAGTAGA+GGG 0.583430 3.2:+41612492 None:intergenic
TATGGTACTTTGACAGCCAT+GGG 0.592161 3.2:-41611968 MS.gene070202:CDS
TCTGATATGCTGAAGGACCT+AGG 0.594866 3.2:-41612130 MS.gene070202:CDS
TTAAAGGAGTTATTCAACCA+GGG 0.595669 3.2:-41612552 MS.gene070202:CDS
TAGTATGATTACCCAGCAAG+AGG 0.598459 3.2:+41611836 None:intergenic
CGGAGGTTTGACTAAAATGG+TGG 0.598611 3.2:-41612086 MS.gene070202:CDS
AGAGAGGCGAGGCCCGCCGG+AGG 0.603320 3.2:+41613065 None:intergenic
TCCAACAAAGAGGATTGTGC+CGG 0.604900 3.2:+41611871 None:intergenic
ACGAGGAGGGCTTATACCCA+TGG 0.610987 3.2:+41611952 None:intergenic
AGGAGTTATTCAACCAGGGG+TGG 0.611289 3.2:-41612548 MS.gene070202:CDS
GAGAGGCGAGGCCCGCCGGA+GGG 0.613433 3.2:+41613066 None:intergenic
TAAAGGAGTTATTCAACCAG+GGG 0.617142 3.2:-41612551 MS.gene070202:CDS
TACCTTGTTCTGGAAATCAA+CGG 0.624465 3.2:+41612951 None:intergenic
AGTCTAGTCGAGGACGAGGA+GGG 0.627803 3.2:+41611939 None:intergenic
TGATTGAGCTGCCATTGAGA+AGG 0.630337 3.2:+41612425 None:intergenic
AAGTCTAGTCGAGGACGAGG+AGG 0.638727 3.2:+41611938 None:intergenic
TGAGCACCTGTCCAACAAAG+AGG 0.641694 3.2:+41611861 None:intergenic
AGAATAACTTGAATCGAGAG+TGG 0.653506 3.2:+41613219 None:intergenic
TAGGTGACTTCAGAATTCCA+AGG 0.662092 3.2:-41612180 MS.gene070202:CDS
TTATTAGAAATAAGAATGGG+TGG 0.662615 3.2:+41611906 None:intergenic
TCAGCTACAAAGTCTAGTCG+AGG 0.689387 3.2:+41611929 None:intergenic
GATGACAGAAACGATGCGAG+AGG 0.692315 3.2:+41613104 None:intergenic
GTGAAATAGAATGAAGCTTG+TGG 0.693520 3.2:+41612212 None:intergenic
TATGCTGAAGGACCTAGGAG+TGG 0.695951 3.2:-41612125 MS.gene070202:CDS
CCATTAGCGACAGAGAGGCG+AGG 0.701044 3.2:+41613054 None:intergenic
ATCGAGAAGTTGTTGCTGTG+TGG 0.709742 3.2:+41613167 None:intergenic
ACACACCATTAGCGACAGAG+AGG 0.711468 3.2:+41613049 None:intergenic
GGGTGATCATTGATTCACGA+CGG 0.714537 3.2:+41613313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAGAAAATAAACAATTA+AGG + chr3.2:41612267-41612286 None:intergenic 15.0%
!! ATACAAGAAAATATAAGATT+CGG + chr3.2:41612353-41612372 None:intergenic 15.0%
!! TATTTAATTGCTAAATTAGT+TGG + chr3.2:41612472-41612491 None:intergenic 15.0%
!! CTCTTATTAGAAATAAGAAT+GGG + chr3.2:41613265-41613284 None:intergenic 20.0%
!! GAAATTTGATATGAATTGTT+AGG - chr3.2:41612533-41612552 MS.gene070202:CDS 20.0%
!! TACAAGAAAATATAAGATTC+GGG + chr3.2:41612352-41612371 None:intergenic 20.0%
!! TCTCTTATTAGAAATAAGAA+TGG + chr3.2:41613266-41613285 None:intergenic 20.0%
!! TTGGATGTTAAAAAACAATA+AGG + chr3.2:41612453-41612472 None:intergenic 20.0%
!!! GTAATATGTAATGTGTTTTA+GGG - chr3.2:41612238-41612257 MS.gene070202:CDS 20.0%
!!! GTTCTATTTTTGATTTCATT+AGG - chr3.2:41612287-41612306 MS.gene070202:CDS 20.0%
!!! TACTGTTTTCTATCAAATTA+GGG - chr3.2:41612324-41612343 MS.gene070202:CDS 20.0%
!!! TGTAATATGTAATGTGTTTT+AGG - chr3.2:41612237-41612256 MS.gene070202:CDS 20.0%
!!! TTACTGTTTTCTATCAAATT+AGG - chr3.2:41612323-41612342 MS.gene070202:CDS 20.0%
! GAAAAAAGTTTGAAGAGAAA+GGG + chr3.2:41612154-41612173 None:intergenic 25.0%
! GTTGAATAACTCCTTTAATA+AGG + chr3.2:41612611-41612630 None:intergenic 25.0%
! TAAAGTACATAGAGAATTGA+CGG + chr3.2:41612863-41612882 None:intergenic 25.0%
! TAATAATGGCCTAGTTTATA+AGG + chr3.2:41612837-41612856 None:intergenic 25.0%
! TAGAAAACAGTAAACAAACA+TGG + chr3.2:41612316-41612335 None:intergenic 25.0%
! TCTATTTCACAAGTTAAAGT+AGG - chr3.2:41612966-41612985 MS.gene070202:CDS 25.0%
! TTATTAGAAATAAGAATGGG+TGG + chr3.2:41613262-41613281 None:intergenic 25.0%
!! TTACTTGGATAAAAGACTTT+TGG + chr3.2:41613145-41613164 None:intergenic 25.0%
!!! GGAATATTTTAGAAACAAAC+AGG + chr3.2:41613124-41613143 None:intergenic 25.0%
!!! TTGAAGTACTTTAAAACCAT+CGG + chr3.2:41612811-41612830 None:intergenic 25.0%
AATATATTGATCCTTCATGC+TGG + chr3.2:41612781-41612800 None:intergenic 30.0%
ACATATTACATACCTTGTTC+TGG + chr3.2:41612227-41612246 None:intergenic 30.0%
AGAATTGACGGTCATAATAA+TGG + chr3.2:41612851-41612870 None:intergenic 30.0%
ATTAAAGGAGTTATTCAACC+AGG - chr3.2:41612612-41612631 MS.gene070202:CDS 30.0%
ATTGTTTAGAGAAGAGATGT+TGG + chr3.2:41611903-41611922 None:intergenic 30.0%
CAAGGTTCAATATCTCATTT+GGG - chr3.2:41613003-41613022 MS.gene070202:CDS 30.0%
CTAATAAGAGAAGATTTGAC+CGG - chr3.2:41613275-41613294 MS.gene070202:CDS 30.0%
CTTCAACTTCCTTATAAACT+AGG - chr3.2:41612825-41612844 MS.gene070202:intron 30.0%
GGAAAAAAGTTTGAAGAGAA+AGG + chr3.2:41612155-41612174 None:intergenic 30.0%
TGAAAACACAATGTTGTTGT+TGG + chr3.2:41611926-41611945 None:intergenic 30.0%
TTAAAGGAGTTATTCAACCA+GGG - chr3.2:41612613-41612632 MS.gene070202:CDS 30.0%
TTGTTTAGAGAAGAGATGTT+GGG + chr3.2:41611902-41611921 None:intergenic 30.0%
TTTATCCAAGTAAACGAAGA+AGG - chr3.2:41613152-41613171 MS.gene070202:CDS 30.0%
! AATCAGAAGAAACGATCTTT+TGG + chr3.2:41612176-41612195 None:intergenic 30.0%
! TATGATTTTCACCTTCTCAA+TGG - chr3.2:41612729-41612748 MS.gene070202:intron 30.0%
!! GATCGATTGATTTGAAACTA+AGG + chr3.2:41612026-41612045 None:intergenic 30.0%
AGAATAACTTGAATCGAGAG+TGG + chr3.2:41611949-41611968 None:intergenic 35.0%
CCAAATGAGATATTGAACCT+TGG + chr3.2:41613005-41613024 None:intergenic 35.0%
CCAAGGTTCAATATCTCATT+TGG - chr3.2:41613002-41613021 MS.gene070202:CDS 35.0%
GACCAATGAAGTCAATTCAT+GGG - chr3.2:41612566-41612585 MS.gene070202:CDS 35.0%
GTGAAATAGAATGAAGCTTG+TGG + chr3.2:41612956-41612975 None:intergenic 35.0%
TAAAGGAGTTATTCAACCAG+GGG - chr3.2:41612614-41612633 MS.gene070202:intron 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr3.2:41613028-41613047 MS.gene070202:CDS 35.0%
TGACCAATGAAGTCAATTCA+TGG - chr3.2:41612565-41612584 MS.gene070202:CDS 35.0%
! AACCCATGAATTGACTTCAT+TGG + chr3.2:41612571-41612590 None:intergenic 35.0%
! TGGGTTGAAAAAGAGACAAA+TGG - chr3.2:41612585-41612604 MS.gene070202:CDS 35.0%
!! GAGACAAATGGCCTTATTAA+AGG - chr3.2:41612597-41612616 MS.gene070202:CDS 35.0%
!! TACCTTGTTCTGGAAATCAA+CGG + chr3.2:41612217-41612236 None:intergenic 35.0%
!! TTTTGAGTGAAACGTTGGTT+CGG + chr3.2:41611876-41611895 None:intergenic 35.0%
AGAAACAAACAGGTCTTGAC+CGG + chr3.2:41613114-41613133 None:intergenic 40.0%
AGAAAGGTAAAACCACTCCT+AGG + chr3.2:41613055-41613074 None:intergenic 40.0%
ATTCTTCCAGATGCGAAAGA+TGG - chr3.2:41612882-41612901 MS.gene070202:intron 40.0%
CAATATATTCGTGCTTCCGA+TGG - chr3.2:41612792-41612811 MS.gene070202:intron 40.0%
GTGTGTGAGTTAAGTCAACA+TGG + chr3.2:41612407-41612426 None:intergenic 40.0%
TAGGTGACTTCAGAATTCCA+AGG - chr3.2:41612985-41613004 MS.gene070202:CDS 40.0%
TATGGTACTTTGACAGCCAT+GGG - chr3.2:41613197-41613216 MS.gene070202:CDS 40.0%
TTCTGATTTCCAAGCCAAGT+TGG - chr3.2:41612188-41612207 MS.gene070202:CDS 40.0%
! GAAAGATGGACTCTCAGATT+TGG - chr3.2:41612896-41612915 MS.gene070202:intron 40.0%
!! ACCATACTCCTTTGAAGTAG+AGG + chr3.2:41612677-41612696 None:intergenic 40.0%
!! ACCATTTTAGTCAAACCTCC+GGG + chr3.2:41613080-41613099 None:intergenic 40.0%
!! CACCATTTTAGTCAAACCTC+CGG + chr3.2:41613081-41613100 None:intergenic 40.0%
!! CCATACTCCTTTGAAGTAGA+GGG + chr3.2:41612676-41612695 None:intergenic 40.0%
!! GTGGTTTTACCTTTCTATCC+CGG - chr3.2:41613059-41613078 MS.gene070202:CDS 40.0%
!! TTCCGTTGATTTCCAGAACA+AGG - chr3.2:41612212-41612231 MS.gene070202:CDS 40.0%
!! TTTGAGTGAAACGTTGGTTC+GGG + chr3.2:41611875-41611894 None:intergenic 40.0%
ATCGAGAAGTTGTTGCTGTG+TGG + chr3.2:41612001-41612020 None:intergenic 45.0%
CACAATCCTCTTTGTTGGAC+AGG - chr3.2:41613298-41613317 MS.gene070202:CDS 45.0%
CAGTGCCTTCTTCGTTTACT+TGG + chr3.2:41613160-41613179 None:intergenic 45.0%
CCCTCTACTTCAAAGGAGTA+TGG - chr3.2:41612673-41612692 MS.gene070202:intron 45.0%
CGGAGGTTTGACTAAAATGG+TGG - chr3.2:41613079-41613098 MS.gene070202:CDS 45.0%
CTATGGTACTTTGACAGCCA+TGG - chr3.2:41613196-41613215 MS.gene070202:CDS 45.0%
GAAATCAACGGAAGCCAACT+TGG + chr3.2:41612205-41612224 None:intergenic 45.0%
GCTAATGCCCTCTACTTCAA+AGG - chr3.2:41612666-41612685 MS.gene070202:intron 45.0%
TCAGCTACAAAGTCTAGTCG+AGG + chr3.2:41613239-41613258 None:intergenic 45.0%
TCCAACAAAGAGGATTGTGC+CGG + chr3.2:41613297-41613316 None:intergenic 45.0%
TCCCGGAGGTTTGACTAAAA+TGG - chr3.2:41613076-41613095 MS.gene070202:CDS 45.0%
TCCTTCATGCTGGTCATGAA+AGG + chr3.2:41612771-41612790 None:intergenic 45.0%
TCCTTTCATGACCAGCATGA+AGG - chr3.2:41612767-41612786 MS.gene070202:intron 45.0%
TCTCAATGGCAGCTCAATCA+AGG - chr3.2:41612743-41612762 MS.gene070202:intron 45.0%
TCTGATATGCTGAAGGACCT+AGG - chr3.2:41613035-41613054 MS.gene070202:CDS 45.0%
TGATTGAGCTGCCATTGAGA+AGG + chr3.2:41612743-41612762 None:intergenic 45.0%
! CATGGCTGTCAAAGTACCAT+AGG + chr3.2:41613198-41613217 None:intergenic 45.0%
! GTTTTACCTTTCTATCCCGG+AGG - chr3.2:41613062-41613081 MS.gene070202:CDS 45.0%
!! AAAATGGTGGACTCACTTGC+CGG - chr3.2:41613092-41613111 MS.gene070202:CDS 45.0%
!! GGCGATTTTGAGTGAAACGT+TGG + chr3.2:41611881-41611900 None:intergenic 45.0%
!! GGGTGATCATTGATTCACGA+CGG + chr3.2:41611855-41611874 None:intergenic 45.0%
ACAAAGTCTAGTCGAGGACG+AGG + chr3.2:41613233-41613252 None:intergenic 50.0%
ACACACCATTAGCGACAGAG+AGG + chr3.2:41612119-41612138 None:intergenic 50.0%
ACCGGCACAATCCTCTTTGT+TGG - chr3.2:41613293-41613312 MS.gene070202:CDS 50.0%
AGAAACGATGCGAGAGGTGA+CGG + chr3.2:41612058-41612077 None:intergenic 50.0%
AGGAGTTATTCAACCAGGGG+TGG - chr3.2:41612617-41612636 MS.gene070202:intron 50.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr3.2:41613318-41613337 MS.gene070202:CDS 50.0%
ATTCTCAGCATCATCGCTGC+CGG - chr3.2:41611964-41611983 MS.gene070202:CDS 50.0%
CTCTGTCGCTAATGGTGTGT+GGG - chr3.2:41612119-41612138 MS.gene070202:CDS 50.0%
GAGAGTCCATCTTTCGCATC+TGG + chr3.2:41612891-41612910 None:intergenic 50.0%
GATGACAGAAACGATGCGAG+AGG + chr3.2:41612064-41612083 None:intergenic 50.0%
GTCAAACCTCCGGGATAGAA+AGG + chr3.2:41613071-41613090 None:intergenic 50.0%
TATGCTGAAGGACCTAGGAG+TGG - chr3.2:41613040-41613059 MS.gene070202:CDS 50.0%
TCTCTGTCGCTAATGGTGTG+TGG - chr3.2:41612118-41612137 MS.gene070202:CDS 50.0%
TGAGCACCTGTCCAACAAAG+AGG + chr3.2:41613307-41613326 None:intergenic 50.0%
AAGTCTAGTCGAGGACGAGG+AGG + chr3.2:41613230-41613249 None:intergenic 55.0%
ACGAGGAGGGCTTATACCCA+TGG + chr3.2:41613216-41613235 None:intergenic 55.0%
AGTCTAGTCGAGGACGAGGA+GGG + chr3.2:41613229-41613248 None:intergenic 55.0%
CAACGGAAGCCAACTTGGCT+TGG + chr3.2:41612200-41612219 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr3.2:41613317-41613336 MS.gene070202:CDS 55.0%
GAAGCTGCTGCTGCTACCTA+TGG - chr3.2:41613179-41613198 MS.gene070202:CDS 55.0%
GTTAAGCTGTTGACCACCCC+TGG + chr3.2:41612633-41612652 None:intergenic 55.0%
CCATTAGCGACAGAGAGGCG+AGG + chr3.2:41612114-41612133 None:intergenic 60.0%
CCTCGCCTCTCTGTCGCTAA+TGG - chr3.2:41612111-41612130 MS.gene070202:CDS 60.0%
CTCAAAGACGCTGCTCCCTC+CGG - chr3.2:41612084-41612103 MS.gene070202:CDS 60.0%
CTGTGTGGTACCCTCAGAGC+CGG + chr3.2:41611986-41612005 None:intergenic 60.0%
!! ATCATCGCTGCCGGCTCTGA+GGG - chr3.2:41611973-41611992 MS.gene070202:CDS 60.0%
AAAGACGCTGCTCCCTCCGG+CGG - chr3.2:41612087-41612106 MS.gene070202:CDS 65.0%
CGGAGGGAGCAGCGTCTTTG+AGG + chr3.2:41612086-41612105 None:intergenic 65.0%
!! CATCATCGCTGCCGGCTCTG+AGG - chr3.2:41611972-41611991 MS.gene070202:CDS 65.0%
AAGACGCTGCTCCCTCCGGC+GGG - chr3.2:41612088-41612107 MS.gene070202:CDS 70.0%
GACAGAGAGGCGAGGCCCGC+CGG + chr3.2:41612106-41612125 None:intergenic 75.0%
! AGAGAGGCGAGGCCCGCCGG+AGG + chr3.2:41612103-41612122 None:intergenic 80.0%
! GAGAGGCGAGGCCCGCCGGA+GGG + chr3.2:41612102-41612121 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 41611844 41613343 41611844 ID=MS.gene070202
chr3.2 mRNA 41611844 41613343 41611844 ID=MS.gene070202.t1;Parent=MS.gene070202
chr3.2 exon 41612954 41613343 41612954 ID=MS.gene070202.t1.exon1;Parent=MS.gene070202.t1
chr3.2 CDS 41612954 41613343 41612954 ID=cds.MS.gene070202.t1;Parent=MS.gene070202.t1
chr3.2 exon 41611844 41612632 41611844 ID=MS.gene070202.t1.exon2;Parent=MS.gene070202.t1
chr3.2 CDS 41611844 41612632 41611844 ID=cds.MS.gene070202.t1;Parent=MS.gene070202.t1
Gene Sequence

>MS.gene070202

ATGGAGTTCCGTCGTGAATCAATGATCACCCGAACCAACGTTTCACTCAAAATCGCCCAACATCTCTTCTCTAAACAATCCAACAACAACATTGTGTTTTCACCACTCTCGATTCAAGTTATTCTCAGCATCATCGCTGCCGGCTCTGAGGGTACCACACAGCAACAACTTCTCGATTTCCTTAGTTTCAAATCAATCGATCAACTCAACTCCGTCACCTCTCGCATCGTTTCTGTCATCCTCAAAGACGCTGCTCCCTCCGGCGGGCCTCGCCTCTCTGTCGCTAATGGTGTGTGGGTTGAACAAACCCTTTCTCTTCAAACTTTTTTCCAAAAGATCGTTTCTTCTGATTTCCAAGCCAAGTTGGCTTCCGTTGATTTCCAGAACAAGGTATGTAATATGTAATGTGTTTTAGGGTTTCCTTAATTGTTTATTTTCTTGTTGTTCTATTTTTGATTTCATTAGGAATCCATGTTTGTTTACTGTTTTCTATCAAATTAGGGTTCCCGAATCTTATATTTTCTTGTATTTATCGATTCAATTCAAATTGACTGAAACTACCATGTTGACTTAACTCACACACACACACACACACAATGTTCATGTCCTTATTGTTTTTTAACATCCAACTAATTTAGCAATTAAATACTTCAATACTTGTGAAAAGAGCTCAACTCATAATTTATTTTGAAATTTGATATGAATTGTTAGGCTGTTGAAGTGACCAATGAAGTCAATTCATGGGTTGAAAAAGAGACAAATGGCCTTATTAAAGGAGTTATTCAACCAGGGGTGGTCAACAGCTTAACGAGACTCATCTTTGCTAATGCCCTCTACTTCAAAGGAGTATGGTCTGAGAAGTTTGATGCTTCAAAAACGAAAGATTATGATTTTCACCTTCTCAATGGCAGCTCAATCAAGGTTCCTTTCATGACCAGCATGAAGGATCAATATATTCGTGCTTCCGATGGTTTTAAAGTACTTCAACTTCCTTATAAACTAGGCCATTATTATGACCGTCAATTCTCTATGTACTTTATTCTTCCAGATGCGAAAGATGGACTCTCAGATTTGGTTGAGAAGATGACTTCTGAATCTGAGTCACTACGCCACAAGCTTCATTCTATTTCACAAGTTAAAGTAGGTGACTTCAGAATTCCAAGGTTCAATATCTCATTTGGGTTTGAAACTTCTGATATGCTGAAGGACCTAGGAGTGGTTTTACCTTTCTATCCCGGAGGTTTGACTAAAATGGTGGACTCACTTGCCGGTCAAGACCTGTTTGTTTCTAAAATATTCCAAAAGTCTTTTATCCAAGTAAACGAAGAAGGCACTGAAGCTGCTGCTGCTACCTATGGTACTTTGACAGCCATGGGTATAAGCCCTCCTCGTCCTCGACTAGACTTTGTAGCTGACCACCCATTCTTATTTCTAATAAGAGAAGATTTGACCGGCACAATCCTCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTAA
Protein sequence

>MS.gene070202.t1

MEFRRESMITRTNVSLKIAQHLFSKQSNNNIVFSPLSIQVILSIIAAGSEGTTQQQLLDFLSFKSIDQLNSVTSRIVSVILKDAAPSGGPRLSVANGVWVEQTLSLQTFFQKIVSSDFQAKLASVDFQNKAVEVTNEVNSWVEKETNGLIKGVIQPGVVNSLTRLIFANALYFKGVWSEKFDASKTKDYDFHLLNGSSIKVPFMTSMKDQYIRASDGFKVLQLPYKLGHYYDRQFSMYFILPDAKDGLSDLVEKMTSESESLRHKLHSISQVKVGDFRIPRFNISFGFETSDMLKDLGVVLPFYPGGLTKMVDSLAGQDLFVSKIFQKSFIQVNEEGTEAAAATYGTLTAMGISPPRPRLDFVADHPFLFLIREDLTGTILFVGQVLNPLAG