AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070204

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070204.t1 MTR_4g045707 88.265 392 42 3 1 392 1 388 0.0 685
MS.gene070204.t1 MTR_3g101010 72.123 391 101 4 5 392 4 389 0.0 530
MS.gene070204.t1 MTR_3g018740 68.217 387 118 4 5 390 4 386 0.0 510
MS.gene070204.t1 MTR_3g048000 64.844 384 114 2 7 390 28 390 1.12e-177 500
MS.gene070204.t1 MTR_8g027395 65.891 387 126 3 6 392 17 397 6.70e-176 496
MS.gene070204.t1 MTR_3g101030 65.450 411 115 9 4 392 24 429 2.78e-175 495
MS.gene070204.t1 MTR_2g046030 63.590 390 131 5 5 390 4 386 1.04e-166 472
MS.gene070204.t1 MTR_8g461160 62.907 399 132 6 1 390 1 392 4.41e-166 471
MS.gene070204.t1 MTR_2g045980 64.103 390 129 5 5 390 4 386 1.49e-165 469
MS.gene070204.t1 MTR_3g101180 61.404 399 144 5 1 390 1 398 3.97e-165 468
MS.gene070204.t1 MTR_4g088525 65.395 367 121 4 25 391 8 368 4.75e-164 464
MS.gene070204.t1 MTR_7g050750 61.735 392 144 4 5 392 7 396 1.76e-163 464
MS.gene070204.t1 MTR_8g027420 61.735 392 133 4 1 392 1 375 5.78e-163 462
MS.gene070204.t1 MTR_7g451890 60.870 391 147 4 6 392 14 402 4.03e-161 458
MS.gene070204.t1 MTR_7g047780 61.381 391 145 4 6 392 14 402 1.14e-159 455
MS.gene070204.t1 MTR_3g101130 59.848 396 148 6 1 392 1 389 2.32e-157 448
MS.gene070204.t1 MTR_7g050810 59.796 393 148 5 6 392 16 404 3.54e-154 441
MS.gene070204.t1 MTR_4g088535 60.417 384 130 5 4 387 5 366 9.93e-153 436
MS.gene070204.t1 MTR_3g101050 60.957 397 124 8 3 391 24 397 5.68e-148 425
MS.gene070204.t1 MTR_3g015620 59.383 389 128 6 6 390 16 378 4.83e-141 407
MS.gene070204.t1 MTR_3g102920 57.033 391 126 7 4 390 56 408 8.98e-136 394
MS.gene070204.t1 MTR_3g101200 55.923 363 131 6 30 390 55 390 2.19e-125 367
MS.gene070204.t1 MTR_3g101190 51.233 365 113 4 28 392 13 312 1.41e-117 344
MS.gene070204.t1 MTR_3g100995 67.181 259 80 4 134 392 11 264 1.68e-116 340
MS.gene070204.t1 MTR_3g018747 64.885 262 74 5 130 390 9 253 5.44e-107 315
MS.gene070204.t1 MTR_3g100010 55.096 314 91 4 31 311 42 338 7.12e-104 310
MS.gene070204.t1 MTR_7g050830 52.681 317 115 5 6 300 16 319 3.59e-101 303
MS.gene070204.t1 MTR_3g015760 60.741 270 100 4 122 390 15 279 1.98e-98 294
MS.gene070204.t1 MTR_3g100520 61.883 223 70 3 171 392 1 209 1.04e-88 267
MS.gene070204.t1 MTR_3g111160 66.964 224 68 6 171 392 1 220 1.54e-87 264
MS.gene070204.t1 MTR_2g046410 66.827 208 61 4 187 390 144 347 3.61e-87 268
MS.gene070204.t1 MTR_3g114310 40.863 394 212 9 12 392 25 410 9.08e-86 267
MS.gene070204.t1 MTR_3g099970 65.657 198 49 4 130 327 20 198 6.58e-82 249
MS.gene070204.t1 MTR_3g101110 52.282 241 83 6 130 366 68 280 1.29e-69 221
MS.gene070204.t1 MTR_3g101150 65.190 158 50 3 237 390 1 157 2.75e-61 195
MS.gene070204.t1 MTR_3g111150 56.497 177 53 1 8 184 1 153 9.30e-60 191
MS.gene070204.t1 MTR_3g101020 56.614 189 53 4 204 392 1 160 7.19e-58 186
MS.gene070204.t1 MTR_3g102870 61.783 157 58 2 193 349 1 155 1.93e-57 186
MS.gene070204.t1 MTR_3g100990 62.595 131 49 0 4 134 3 133 1.54e-46 166
MS.gene070204.t1 MTR_4g093550 63.095 84 31 0 6 89 6 89 2.22e-28 107
MS.gene070204.t1 MTR_3g101140 64.286 70 22 2 325 392 48 116 3.20e-20 85.9
MS.gene070204.t1 MTR_6g046890 57.143 84 33 1 14 97 7 87 1.44e-19 84.7
MS.gene070204.t1 MTR_3g101080 92.857 28 2 0 355 382 12 39 8.15e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070204.t1 AT1G47710 53.470 389 176 5 5 390 4 390 1.60e-142 411
MS.gene070204.t1 AT1G47710 53.470 389 176 5 5 390 31 417 7.35e-142 410
MS.gene070204.t1 AT2G25240 47.570 391 185 9 6 389 5 382 2.10e-117 347
MS.gene070204.t1 AT3G45220 45.226 398 192 7 6 389 5 390 2.42e-116 344
MS.gene070204.t1 AT2G26390 44.612 399 189 10 6 389 5 386 2.86e-107 321
MS.gene070204.t1 AT1G62170 43.112 392 193 6 6 391 66 433 3.53e-102 309
MS.gene070204.t1 AT1G64030 43.223 391 193 8 5 389 4 371 1.09e-97 296
MS.gene070204.t1 AT2G14540 43.959 389 191 7 5 389 32 397 6.38e-97 295
MS.gene070204.t1 AT1G62170 40.000 425 192 7 6 391 66 466 3.10e-95 293
MS.gene070204.t1 AT2G35580 43.280 372 179 9 27 389 23 371 2.00e-90 277
MS.gene070204.t1 AT1G64010 49.772 219 86 5 171 389 1 195 1.67e-64 204
MS.gene070204.t1 AT1G64010 49.020 204 80 5 186 389 2 181 9.95e-57 184
MS.gene070204.t1 AT1G62160 39.423 208 88 6 193 391 42 220 1.64e-33 125
MS.gene070204.t1 AT1G63280 53.043 115 51 2 130 243 8 120 3.61e-32 118
MS.gene070204.t1 AT1G51330 50.893 112 51 3 129 237 30 140 2.59e-26 104
MS.gene070204.t1 AT1G64020 36.441 118 68 4 7 120 6 120 2.67e-16 75.1

Find 99 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGTTCAATATCTCATT+TGG 0.243686 3.2:+41572393 MS.gene070204:CDS
GTTGAATAACTCCTTTAATA+AGG 0.260616 3.2:-41571999 None:intergenic
CAGTGCCTTCTTCGTTTACT+TGG 0.271310 3.2:-41572548 None:intergenic
GAGACAAATGGCCTTATTAA+AGG 0.273581 3.2:+41571988 MS.gene070204:CDS
TTACTTGGATAAAAGACTTT+TGG 0.279450 3.2:-41572533 None:intergenic
AATCAGAAGAAACGATCTTT+TGG 0.302672 3.2:-41571565 None:intergenic
CAGGTGCTCAATCCTCTTGC+TGG 0.322054 3.2:+41572708 MS.gene070204:CDS
ACATATTACATACCTTGTTC+TGG 0.328120 3.2:-41571616 None:intergenic
CCTCGCCTCTCTGTCGCTAA+TGG 0.342690 3.2:+41571503 MS.gene070204:CDS
TCCCGGAGGTTTGACTAAAA+TGG 0.356212 3.2:+41572467 MS.gene070204:CDS
TAATAATGGCCTAGTTTATA+AGG 0.358860 3.2:-41572225 None:intergenic
AGAATTGACGGTCATAATAA+TGG 0.381177 3.2:-41572239 None:intergenic
ACCGGCACAATCCTCTTTGT+TGG 0.389726 3.2:+41572684 MS.gene070204:CDS
AACCCATGAATTGACTTCAT+TGG 0.393781 3.2:-41571959 None:intergenic
CACAATCCTCTTTGTTGGAC+AGG 0.397313 3.2:+41572689 MS.gene070204:CDS
CAAGGTTCAATATCTCATTT+GGG 0.405007 3.2:+41572394 MS.gene070204:CDS
TTTGAGTGAAACGTTGGTTC+GGG 0.409970 3.2:-41571264 None:intergenic
GAGAGTCCATCTTTCGCATC+TGG 0.410672 3.2:-41572279 None:intergenic
CTTCAACTTCCTTATAAACT+AGG 0.412556 3.2:+41572216 MS.gene070204:CDS
CCCTCTACTTCAAAGGAGTA+TGG 0.413172 3.2:+41572064 MS.gene070204:CDS
AAAATGGTGGACTCACTTGC+CGG 0.418030 3.2:+41572483 MS.gene070204:CDS
GAAAGATGGACTCTCAGATT+TGG 0.427558 3.2:+41572287 MS.gene070204:CDS
GACAGAGAGGCGAGGCCCGC+CGG 0.436040 3.2:-41571495 None:intergenic
TGAAAACACAATGTTGTTGT+TGG 0.440981 3.2:-41571315 None:intergenic
GAAATCAACGGAAGCCAACT+TGG 0.444733 3.2:-41571594 None:intergenic
GATCGATTGATTTGAAACTA+AGG 0.453659 3.2:-41571415 None:intergenic
TGACCAATGAAGTCAATTCA+TGG 0.453988 3.2:+41571956 MS.gene070204:CDS
ATTCTTCCAGATGCGAAAGA+TGG 0.456862 3.2:+41572273 MS.gene070204:CDS
CGGAGGGAGCAGCGTCTTTG+AGG 0.458037 3.2:-41571475 None:intergenic
TCTATTTCACAAGTTAAAGT+AGG 0.458733 3.2:+41572357 MS.gene070204:CDS
CTCTGTCGCTAATGGTGTGT+GGG 0.461547 3.2:+41571511 MS.gene070204:CDS
CAACGGAAGCCAACTTGGCT+TGG 0.461840 3.2:-41571589 None:intergenic
CATCATCGCTGCCGGCTCTG+AGG 0.467291 3.2:+41571364 MS.gene070204:CDS
AGAAACAAACAGGTCTTGAC+CGG 0.477188 3.2:-41572502 None:intergenic
TTGTTTAGAGAAGAGATGTT+GGG 0.479897 3.2:-41571291 None:intergenic
TTTATCCAAGTAAACGAAGA+AGG 0.480744 3.2:+41572543 MS.gene070204:CDS
TCTCTTATTAGAAATAAGAA+TGG 0.482752 3.2:-41572654 None:intergenic
TAAAGTACATAGAGAATTGA+CGG 0.488589 3.2:-41572251 None:intergenic
ATCATCGCTGCCGGCTCTGA+GGG 0.489637 3.2:+41571365 MS.gene070204:CDS
GTCAAACCTCCGGGATAGAA+AGG 0.493031 3.2:-41572459 None:intergenic
CTCAAAGACGCTGCTCCCTC+CGG 0.493872 3.2:+41571476 MS.gene070204:CDS
TCTCAATGGCAGCTCAATCA+AGG 0.494273 3.2:+41572134 MS.gene070204:CDS
GTTAAGCTGTTGACCACCCC+TGG 0.494814 3.2:-41572021 None:intergenic
CTCTTATTAGAAATAAGAAT+GGG 0.494945 3.2:-41572653 None:intergenic
ATTGTTTAGAGAAGAGATGT+TGG 0.505542 3.2:-41571292 None:intergenic
TCCTTTCATGACCAGCATGA+AGG 0.520615 3.2:+41572158 MS.gene070204:CDS
CTGTGTGGTACCCTCAGAGC+CGG 0.522370 3.2:-41571375 None:intergenic
AAGACGCTGCTCCCTCCGGC+GGG 0.522698 3.2:+41571480 MS.gene070204:CDS
CTAATAAGAGAAGATTTGAC+CGG 0.523302 3.2:+41572666 MS.gene070204:CDS
TTGAAGTACTTTAAAACCAT+CGG 0.525939 3.2:-41572199 None:intergenic
GAAGCTGCTGCTGCTACCTA+TGG 0.527503 3.2:+41572570 MS.gene070204:CDS
CTATGGTACTTTGACAGCCA+TGG 0.529449 3.2:+41572587 MS.gene070204:CDS
AAAGACGCTGCTCCCTCCGG+CGG 0.530193 3.2:+41571479 MS.gene070204:CDS
CAATATATTCGTGCTTCCGA+TGG 0.530199 3.2:+41572183 MS.gene070204:CDS
TTCTGATTTCCAAGCCAAGT+TGG 0.531191 3.2:+41571580 MS.gene070204:CDS
ATTCTCAGCATCATCGCTGC+CGG 0.533521 3.2:+41571356 MS.gene070204:CDS
AGAAAGGTAAAACCACTCCT+AGG 0.543661 3.2:-41572443 None:intergenic
AGAAACGATGCGAGAGGTGA+CGG 0.548056 3.2:-41571447 None:intergenic
GCTAATGCCCTCTACTTCAA+AGG 0.549267 3.2:+41572057 MS.gene070204:CDS
TTCCGTTGATTTCCAGAACA+AGG 0.549589 3.2:+41571604 MS.gene070204:CDS
ACCATACTCCTTTGAAGTAG+AGG 0.553367 3.2:-41572065 None:intergenic
ACAAAGTCTAGTCGAGGACG+AGG 0.560984 3.2:-41572621 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.561778 3.2:+41572709 MS.gene070204:CDS
GACCAATGAAGTCAATTCAT+GGG 0.562924 3.2:+41571957 MS.gene070204:CDS
CCAAATGAGATATTGAACCT+TGG 0.563895 3.2:-41572393 None:intergenic
ATTAAAGGAGTTATTCAACC+AGG 0.564407 3.2:+41572003 MS.gene070204:CDS
TCCTTCATGCTGGTCATGAA+AGG 0.565992 3.2:-41572159 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.568879 3.2:+41572419 MS.gene070204:CDS
CATGGCTGTCAAAGTACCAT+AGG 0.573062 3.2:-41572586 None:intergenic
AATATATTGATCCTTCATGC+TGG 0.580830 3.2:-41572169 None:intergenic
TCTCTGTCGCTAATGGTGTG+TGG 0.581743 3.2:+41571510 MS.gene070204:CDS
CCATACTCCTTTGAAGTAGA+GGG 0.583430 3.2:-41572064 None:intergenic
TATGGTACTTTGACAGCCAT+GGG 0.592161 3.2:+41572588 MS.gene070204:CDS
TCTGATATGCTGAAGGACCT+AGG 0.594866 3.2:+41572426 MS.gene070204:CDS
TTAAAGGAGTTATTCAACCA+GGG 0.595669 3.2:+41572004 MS.gene070204:CDS
TAGTATGATTACCCAGCAAG+AGG 0.598459 3.2:-41572720 None:intergenic
CGGAGGTTTGACTAAAATGG+TGG 0.598611 3.2:+41572470 MS.gene070204:CDS
AGAGAGGCGAGGCCCGCCGG+AGG 0.603320 3.2:-41571492 None:intergenic
TCCAACAAAGAGGATTGTGC+CGG 0.604900 3.2:-41572685 None:intergenic
ACGAGGAGGGCTTATACCCA+TGG 0.610987 3.2:-41572604 None:intergenic
AGGAGTTATTCAACCAGGGG+TGG 0.611289 3.2:+41572008 MS.gene070204:CDS
GAGAGGCGAGGCCCGCCGGA+GGG 0.613433 3.2:-41571491 None:intergenic
TAAAGGAGTTATTCAACCAG+GGG 0.617142 3.2:+41572005 MS.gene070204:CDS
TACCTTGTTCTGGAAATCAA+CGG 0.624465 3.2:-41571606 None:intergenic
AGTCTAGTCGAGGACGAGGA+GGG 0.627803 3.2:-41572617 None:intergenic
TGATTGAGCTGCCATTGAGA+AGG 0.630337 3.2:-41572131 None:intergenic
AAGTCTAGTCGAGGACGAGG+AGG 0.638727 3.2:-41572618 None:intergenic
TGAGCACCTGTCCAACAAAG+AGG 0.641694 3.2:-41572695 None:intergenic
AGAATAACTTGAATCGAGAG+TGG 0.653506 3.2:-41571338 None:intergenic
TAGGTGACTTCAGAATTCCA+AGG 0.662092 3.2:+41572376 MS.gene070204:CDS
TTATTAGAAATAAGAATGGG+TGG 0.662615 3.2:-41572650 None:intergenic
TCAGCTACAAAGTCTAGTCG+AGG 0.689387 3.2:-41572627 None:intergenic
GATGACAGAAACGATGCGAG+AGG 0.692315 3.2:-41571453 None:intergenic
GTGAAATAGAATGAAGCTTG+TGG 0.693520 3.2:-41572344 None:intergenic
TATGCTGAAGGACCTAGGAG+TGG 0.695951 3.2:+41572431 MS.gene070204:CDS
CCATTAGCGACAGAGAGGCG+AGG 0.701044 3.2:-41571503 None:intergenic
ATCGAGAAGTTGTTGCTGTG+TGG 0.709742 3.2:-41571390 None:intergenic
ACACACCATTAGCGACAGAG+AGG 0.711468 3.2:-41571508 None:intergenic
GGGTGATCATTGATTCACGA+CGG 0.714537 3.2:-41571244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAGAAAATAAACAATTA+AGG - chr3.2:41571658-41571677 None:intergenic 15.0%
!! ATACAAGAAAATATAAGATT+CGG - chr3.2:41571744-41571763 None:intergenic 15.0%
!! TATTTAATTGCTAAATTAGT+TGG - chr3.2:41571863-41571882 None:intergenic 15.0%
!! ATGTAATATGTAATGTGTTT+AGG + chr3.2:41571628-41571647 MS.gene070204:intron 20.0%
!! CTCTTATTAGAAATAAGAAT+GGG - chr3.2:41572656-41572675 None:intergenic 20.0%
!! GAAATTTGATATGAATTGTT+AGG + chr3.2:41571924-41571943 MS.gene070204:intron 20.0%
!! TACAAGAAAATATAAGATTC+GGG - chr3.2:41571743-41571762 None:intergenic 20.0%
!! TCTCTTATTAGAAATAAGAA+TGG - chr3.2:41572657-41572676 None:intergenic 20.0%
!! TGTAATATGTAATGTGTTTA+GGG + chr3.2:41571629-41571648 MS.gene070204:intron 20.0%
!! TTGGATGTTAAAAAACAATA+AGG - chr3.2:41571844-41571863 None:intergenic 20.0%
!!! GTTCTATTTTTGATTTCATT+AGG + chr3.2:41571678-41571697 MS.gene070204:intron 20.0%
!!! TACTGTTTTCTATCAAATTA+GGG + chr3.2:41571715-41571734 MS.gene070204:intron 20.0%
!!! TTACTGTTTTCTATCAAATT+AGG + chr3.2:41571714-41571733 MS.gene070204:intron 20.0%
! GAAAAAAGTTTGAAGAGAAA+GGG - chr3.2:41571546-41571565 None:intergenic 25.0%
! GTTGAATAACTCCTTTAATA+AGG - chr3.2:41572002-41572021 None:intergenic 25.0%
! TAAAGTACATAGAGAATTGA+CGG - chr3.2:41572254-41572273 None:intergenic 25.0%
! TAATAATGGCCTAGTTTATA+AGG - chr3.2:41572228-41572247 None:intergenic 25.0%
! TAGAAAACAGTAAACAAACA+TGG - chr3.2:41571707-41571726 None:intergenic 25.0%
! TCTATTTCACAAGTTAAAGT+AGG + chr3.2:41572357-41572376 MS.gene070204:CDS 25.0%
! TTATTAGAAATAAGAATGGG+TGG - chr3.2:41572653-41572672 None:intergenic 25.0%
!! TTACTTGGATAAAAGACTTT+TGG - chr3.2:41572536-41572555 None:intergenic 25.0%
!!! GGAATATTTTAGAAACAAAC+AGG - chr3.2:41572515-41572534 None:intergenic 25.0%
!!! TTGAAGTACTTTAAAACCAT+CGG - chr3.2:41572202-41572221 None:intergenic 25.0%
AATATATTGATCCTTCATGC+TGG - chr3.2:41572172-41572191 None:intergenic 30.0%
ACATATTACATACCTTGTTC+TGG - chr3.2:41571619-41571638 None:intergenic 30.0%
AGAATTGACGGTCATAATAA+TGG - chr3.2:41572242-41572261 None:intergenic 30.0%
ATTAAAGGAGTTATTCAACC+AGG + chr3.2:41572003-41572022 MS.gene070204:CDS 30.0%
ATTGTTTAGAGAAGAGATGT+TGG - chr3.2:41571295-41571314 None:intergenic 30.0%
CAAGGTTCAATATCTCATTT+GGG + chr3.2:41572394-41572413 MS.gene070204:CDS 30.0%
CTAATAAGAGAAGATTTGAC+CGG + chr3.2:41572666-41572685 MS.gene070204:CDS 30.0%
CTTCAACTTCCTTATAAACT+AGG + chr3.2:41572216-41572235 MS.gene070204:CDS 30.0%
GGAAAAAAGTTTGAAGAGAA+AGG - chr3.2:41571547-41571566 None:intergenic 30.0%
TGAAAACACAATGTTGTTGT+TGG - chr3.2:41571318-41571337 None:intergenic 30.0%
TTAAAGGAGTTATTCAACCA+GGG + chr3.2:41572004-41572023 MS.gene070204:CDS 30.0%
TTGTTTAGAGAAGAGATGTT+GGG - chr3.2:41571294-41571313 None:intergenic 30.0%
TTTATCCAAGTAAACGAAGA+AGG + chr3.2:41572543-41572562 MS.gene070204:CDS 30.0%
! AATCAGAAGAAACGATCTTT+TGG - chr3.2:41571568-41571587 None:intergenic 30.0%
! TATGATTTTCACCTTCTCAA+TGG + chr3.2:41572120-41572139 MS.gene070204:CDS 30.0%
!! GATCGATTGATTTGAAACTA+AGG - chr3.2:41571418-41571437 None:intergenic 30.0%
AGAATAACTTGAATCGAGAG+TGG - chr3.2:41571341-41571360 None:intergenic 35.0%
CCAAATGAGATATTGAACCT+TGG - chr3.2:41572396-41572415 None:intergenic 35.0%
CCAAGGTTCAATATCTCATT+TGG + chr3.2:41572393-41572412 MS.gene070204:CDS 35.0%
GACCAATGAAGTCAATTCAT+GGG + chr3.2:41571957-41571976 MS.gene070204:CDS 35.0%
GTGAAATAGAATGAAGCTTG+TGG - chr3.2:41572347-41572366 None:intergenic 35.0%
TAAAGGAGTTATTCAACCAG+GGG + chr3.2:41572005-41572024 MS.gene070204:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr3.2:41572419-41572438 MS.gene070204:CDS 35.0%
TGACCAATGAAGTCAATTCA+TGG + chr3.2:41571956-41571975 MS.gene070204:CDS 35.0%
! AACCCATGAATTGACTTCAT+TGG - chr3.2:41571962-41571981 None:intergenic 35.0%
! TGGGTTGAAAAAGAGACAAA+TGG + chr3.2:41571976-41571995 MS.gene070204:CDS 35.0%
!! GAGACAAATGGCCTTATTAA+AGG + chr3.2:41571988-41572007 MS.gene070204:CDS 35.0%
!! TACCTTGTTCTGGAAATCAA+CGG - chr3.2:41571609-41571628 None:intergenic 35.0%
!! TTTTGAGTGAAACGTTGGTT+CGG - chr3.2:41571268-41571287 None:intergenic 35.0%
AGAAACAAACAGGTCTTGAC+CGG - chr3.2:41572505-41572524 None:intergenic 40.0%
AGAAAGGTAAAACCACTCCT+AGG - chr3.2:41572446-41572465 None:intergenic 40.0%
ATTCTTCCAGATGCGAAAGA+TGG + chr3.2:41572273-41572292 MS.gene070204:CDS 40.0%
CAATATATTCGTGCTTCCGA+TGG + chr3.2:41572183-41572202 MS.gene070204:CDS 40.0%
GTGTGTGAGTTAAGTCAACA+TGG - chr3.2:41571798-41571817 None:intergenic 40.0%
TAGGTGACTTCAGAATTCCA+AGG + chr3.2:41572376-41572395 MS.gene070204:CDS 40.0%
TATGGTACTTTGACAGCCAT+GGG + chr3.2:41572588-41572607 MS.gene070204:CDS 40.0%
TTCTGATTTCCAAGCCAAGT+TGG + chr3.2:41571580-41571599 MS.gene070204:CDS 40.0%
! GAAAGATGGACTCTCAGATT+TGG + chr3.2:41572287-41572306 MS.gene070204:CDS 40.0%
!! ACCATACTCCTTTGAAGTAG+AGG - chr3.2:41572068-41572087 None:intergenic 40.0%
!! ACCATTTTAGTCAAACCTCC+GGG - chr3.2:41572471-41572490 None:intergenic 40.0%
!! CACCATTTTAGTCAAACCTC+CGG - chr3.2:41572472-41572491 None:intergenic 40.0%
!! CCATACTCCTTTGAAGTAGA+GGG - chr3.2:41572067-41572086 None:intergenic 40.0%
!! GTGGTTTTACCTTTCTATCC+CGG + chr3.2:41572450-41572469 MS.gene070204:CDS 40.0%
!! TTCCGTTGATTTCCAGAACA+AGG + chr3.2:41571604-41571623 MS.gene070204:CDS 40.0%
!! TTTGAGTGAAACGTTGGTTC+GGG - chr3.2:41571267-41571286 None:intergenic 40.0%
ATCGAGAAGTTGTTGCTGTG+TGG - chr3.2:41571393-41571412 None:intergenic 45.0%
CACAATCCTCTTTGTTGGAC+AGG + chr3.2:41572689-41572708 MS.gene070204:CDS 45.0%
CAGTGCCTTCTTCGTTTACT+TGG - chr3.2:41572551-41572570 None:intergenic 45.0%
CCCTCTACTTCAAAGGAGTA+TGG + chr3.2:41572064-41572083 MS.gene070204:CDS 45.0%
CGGAGGTTTGACTAAAATGG+TGG + chr3.2:41572470-41572489 MS.gene070204:CDS 45.0%
CTATGGTACTTTGACAGCCA+TGG + chr3.2:41572587-41572606 MS.gene070204:CDS 45.0%
GAAATCAACGGAAGCCAACT+TGG - chr3.2:41571597-41571616 None:intergenic 45.0%
GCTAATGCCCTCTACTTCAA+AGG + chr3.2:41572057-41572076 MS.gene070204:CDS 45.0%
TCAGCTACAAAGTCTAGTCG+AGG - chr3.2:41572630-41572649 None:intergenic 45.0%
TCCAACAAAGAGGATTGTGC+CGG - chr3.2:41572688-41572707 None:intergenic 45.0%
TCCCGGAGGTTTGACTAAAA+TGG + chr3.2:41572467-41572486 MS.gene070204:CDS 45.0%
TCCTTCATGCTGGTCATGAA+AGG - chr3.2:41572162-41572181 None:intergenic 45.0%
TCCTTTCATGACCAGCATGA+AGG + chr3.2:41572158-41572177 MS.gene070204:CDS 45.0%
TCTCAATGGCAGCTCAATCA+AGG + chr3.2:41572134-41572153 MS.gene070204:CDS 45.0%
TCTGATATGCTGAAGGACCT+AGG + chr3.2:41572426-41572445 MS.gene070204:CDS 45.0%
TGATTGAGCTGCCATTGAGA+AGG - chr3.2:41572134-41572153 None:intergenic 45.0%
! CATGGCTGTCAAAGTACCAT+AGG - chr3.2:41572589-41572608 None:intergenic 45.0%
! GTTTTACCTTTCTATCCCGG+AGG + chr3.2:41572453-41572472 MS.gene070204:CDS 45.0%
!! AAAATGGTGGACTCACTTGC+CGG + chr3.2:41572483-41572502 MS.gene070204:CDS 45.0%
!! GGCGATTTTGAGTGAAACGT+TGG - chr3.2:41571273-41571292 None:intergenic 45.0%
!! GGGTGATCATTGATTCACGA+CGG - chr3.2:41571247-41571266 None:intergenic 45.0%
ACAAAGTCTAGTCGAGGACG+AGG - chr3.2:41572624-41572643 None:intergenic 50.0%
ACACACCATTAGCGACAGAG+AGG - chr3.2:41571511-41571530 None:intergenic 50.0%
ACCGGCACAATCCTCTTTGT+TGG + chr3.2:41572684-41572703 MS.gene070204:CDS 50.0%
AGAAACGATGCGAGAGGTGA+CGG - chr3.2:41571450-41571469 None:intergenic 50.0%
AGGAGTTATTCAACCAGGGG+TGG + chr3.2:41572008-41572027 MS.gene070204:CDS 50.0%
AGGTGCTCAATCCTCTTGCT+GGG + chr3.2:41572709-41572728 MS.gene070204:CDS 50.0%
ATTCTCAGCATCATCGCTGC+CGG + chr3.2:41571356-41571375 MS.gene070204:CDS 50.0%
CTCTGTCGCTAATGGTGTGT+GGG + chr3.2:41571511-41571530 MS.gene070204:CDS 50.0%
GAGAGTCCATCTTTCGCATC+TGG - chr3.2:41572282-41572301 None:intergenic 50.0%
GATGACAGAAACGATGCGAG+AGG - chr3.2:41571456-41571475 None:intergenic 50.0%
GTCAAACCTCCGGGATAGAA+AGG - chr3.2:41572462-41572481 None:intergenic 50.0%
TATGCTGAAGGACCTAGGAG+TGG + chr3.2:41572431-41572450 MS.gene070204:CDS 50.0%
TCTCTGTCGCTAATGGTGTG+TGG + chr3.2:41571510-41571529 MS.gene070204:CDS 50.0%
TGAGCACCTGTCCAACAAAG+AGG - chr3.2:41572698-41572717 None:intergenic 50.0%
AAGTCTAGTCGAGGACGAGG+AGG - chr3.2:41572621-41572640 None:intergenic 55.0%
ACGAGGAGGGCTTATACCCA+TGG - chr3.2:41572607-41572626 None:intergenic 55.0%
AGTCTAGTCGAGGACGAGGA+GGG - chr3.2:41572620-41572639 None:intergenic 55.0%
CAACGGAAGCCAACTTGGCT+TGG - chr3.2:41571592-41571611 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG + chr3.2:41572708-41572727 MS.gene070204:CDS 55.0%
GAAGCTGCTGCTGCTACCTA+TGG + chr3.2:41572570-41572589 MS.gene070204:CDS 55.0%
GTTAAGCTGTTGACCACCCC+TGG - chr3.2:41572024-41572043 None:intergenic 55.0%
CCATTAGCGACAGAGAGGCG+AGG - chr3.2:41571506-41571525 None:intergenic 60.0%
CCTCGCCTCTCTGTCGCTAA+TGG + chr3.2:41571503-41571522 MS.gene070204:CDS 60.0%
CTCAAAGACGCTGCTCCCTC+CGG + chr3.2:41571476-41571495 MS.gene070204:CDS 60.0%
CTGTGTGGTACCCTCAGAGC+CGG - chr3.2:41571378-41571397 None:intergenic 60.0%
!! ATCATCGCTGCCGGCTCTGA+GGG + chr3.2:41571365-41571384 MS.gene070204:CDS 60.0%
AAAGACGCTGCTCCCTCCGG+CGG + chr3.2:41571479-41571498 MS.gene070204:CDS 65.0%
CGGAGGGAGCAGCGTCTTTG+AGG - chr3.2:41571478-41571497 None:intergenic 65.0%
!! CATCATCGCTGCCGGCTCTG+AGG + chr3.2:41571364-41571383 MS.gene070204:CDS 65.0%
AAGACGCTGCTCCCTCCGGC+GGG + chr3.2:41571480-41571499 MS.gene070204:CDS 70.0%
GACAGAGAGGCGAGGCCCGC+CGG - chr3.2:41571498-41571517 None:intergenic 75.0%
! AGAGAGGCGAGGCCCGCCGG+AGG - chr3.2:41571495-41571514 None:intergenic 80.0%
! GAGAGGCGAGGCCCGCCGGA+GGG - chr3.2:41571494-41571513 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 41571236 41572734 41571236 ID=MS.gene070204
chr3.2 mRNA 41571236 41572734 41571236 ID=MS.gene070204.t1;Parent=MS.gene070204
chr3.2 exon 41571236 41571625 41571236 ID=MS.gene070204.t1.exon1;Parent=MS.gene070204.t1
chr3.2 CDS 41571236 41571625 41571236 ID=cds.MS.gene070204.t1;Parent=MS.gene070204.t1
chr3.2 exon 41571946 41572734 41571946 ID=MS.gene070204.t1.exon2;Parent=MS.gene070204.t1
chr3.2 CDS 41571946 41572734 41571946 ID=cds.MS.gene070204.t1;Parent=MS.gene070204.t1
Gene Sequence

>MS.gene070204

ATGGAGTTCCGTCGTGAATCAATGATCACCCGAACCAACGTTTCACTCAAAATCGCCCAACATCTCTTCTCTAAACAATCCAACAACAACATTGTGTTTTCACCACTCTCGATTCAAGTTATTCTCAGCATCATCGCTGCCGGCTCTGAGGGTACCACACAGCAACAACTTCTCGATTTCCTTAGTTTCAAATCAATCGATCAACTCAACTCCGTCACCTCTCGCATCGTTTCTGTCATCCTCAAAGACGCTGCTCCCTCCGGCGGGCCTCGCCTCTCTGTCGCTAATGGTGTGTGGGTTGAACAAACCCTTTCTCTTCAAACTTTTTTCCAAAAGATCGTTTCTTCTGATTTCCAAGCCAAGTTGGCTTCCGTTGATTTCCAGAACAAGGTATGTAATATGTAATGTGTTTAGGGTTTCCTTAATTGTTTATTTTCTTGTTGTTCTATTTTTGATTTCATTAGGAATCCATGTTTGTTTACTGTTTTCTATCAAATTAGGGTTCCCGAATCTTATATTTTCTTGTATTTATCGATTCAATTCAAATTGACTGAAACTACCATGTTGACTTAACTCACACACACACACACACACAATGTTCATGTCCTTATTGTTTTTTAACATCCAACTAATTTAGCAATTAAATACTTCAATACTTGTGAAAAGAGCTCAACTCATAATTTATTTTGAAATTTGATATGAATTGTTAGGCTGTTGAAGTGACCAATGAAGTCAATTCATGGGTTGAAAAAGAGACAAATGGCCTTATTAAAGGAGTTATTCAACCAGGGGTGGTCAACAGCTTAACGAGACTCATCTTTGCTAATGCCCTCTACTTCAAAGGAGTATGGTCTGAGAAGTTTGATGCTTCAAAAACGAAAGATTATGATTTTCACCTTCTCAATGGCAGCTCAATCAAGGTTCCTTTCATGACCAGCATGAAGGATCAATATATTCGTGCTTCCGATGGTTTTAAAGTACTTCAACTTCCTTATAAACTAGGCCATTATTATGACCGTCAATTCTCTATGTACTTTATTCTTCCAGATGCGAAAGATGGACTCTCAGATTTGGTTGAGAAGATGACTTCTGAATCTGAGTCACTACGCCACAAGCTTCATTCTATTTCACAAGTTAAAGTAGGTGACTTCAGAATTCCAAGGTTCAATATCTCATTTGGGTTTGAAACTTCTGATATGCTGAAGGACCTAGGAGTGGTTTTACCTTTCTATCCCGGAGGTTTGACTAAAATGGTGGACTCACTTGCCGGTCAAGACCTGTTTGTTTCTAAAATATTCCAAAAGTCTTTTATCCAAGTAAACGAAGAAGGCACTGAAGCTGCTGCTGCTACCTATGGTACTTTGACAGCCATGGGTATAAGCCCTCCTCGTCCTCGACTAGACTTTGTAGCTGACCACCCATTCTTATTTCTAATAAGAGAAGATTTGACCGGCACAATCCTCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTAA
Protein sequence

>MS.gene070204.t1

MEFRRESMITRTNVSLKIAQHLFSKQSNNNIVFSPLSIQVILSIIAAGSEGTTQQQLLDFLSFKSIDQLNSVTSRIVSVILKDAAPSGGPRLSVANGVWVEQTLSLQTFFQKIVSSDFQAKLASVDFQNKAVEVTNEVNSWVEKETNGLIKGVIQPGVVNSLTRLIFANALYFKGVWSEKFDASKTKDYDFHLLNGSSIKVPFMTSMKDQYIRASDGFKVLQLPYKLGHYYDRQFSMYFILPDAKDGLSDLVEKMTSESESLRHKLHSISQVKVGDFRIPRFNISFGFETSDMLKDLGVVLPFYPGGLTKMVDSLAGQDLFVSKIFQKSFIQVNEEGTEAAAATYGTLTAMGISPPRPRLDFVADHPFLFLIREDLTGTILFVGQVLNPLAG