AlfalfaGEDB | MS.gene070259

M. sativa cultivar XinJiangDaYe / MS.gene070259

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070259.t1	CAT79815.1	98.8	328	4	0	1	328	1	328	1.80E-189	671.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070259.t1	Q5XF57	55.2	281	126	0	48	328	249	529	2.4e-94	347.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070259.t1	C1L342	98.8	328	4	0	1	328	1	328	1.3e-189	671.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene070259	0.810678	1.02E-50	-1.69E-46
MS.gene054584	MS.gene070259	0.817864	2.64E-52	-1.69E-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070259.t1	MTR_4g127840	98.476	328	5	0	1	328	1	328	0.0	672
MS.gene070259.t1	MTR_4g128990	60.915	284	109	1	47	328	244	527	5.13e-131	386
MS.gene070259.t1	MTR_4g128990	60.915	284	109	1	47	328	243	526	5.61e-131	386
MS.gene070259.t1	MTR_1g089570	54.575	306	126	4	46	341	99	401	4.24e-117	345
MS.gene070259.t1	MTR_5g031870	57.840	287	117	3	48	332	120	404	5.32e-117	346
MS.gene070259.t1	MTR_5g031870	57.491	287	113	3	48	332	120	399	1.16e-116	345
MS.gene070259.t1	MTR_2g020810	53.448	290	133	2	43	332	99	386	9.47e-116	343
MS.gene070259.t1	MTR_8g068390	51.935	310	142	4	25	329	122	429	1.31e-107	323
MS.gene070259.t1	MTR_1g082310	52.313	281	133	1	48	328	135	414	1.69e-107	323
MS.gene070259.t1	MTR_7g113980	52.727	275	129	1	54	328	115	388	1.05e-105	317

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070259.t1	AT2G18890	69.670	333	95	4	1	328	1	332	3.06e-172	483
MS.gene070259.t1	AT2G18890	69.369	333	96	4	1	328	1	332	1.23e-170	481
MS.gene070259.t1	AT2G18890	70.370	270	74	4	1	265	1	269	3.83e-139	396
MS.gene070259.t1	AT5G57670	55.160	281	126	0	48	328	249	529	3.92e-117	351
MS.gene070259.t1	AT5G65530	53.628	317	138	5	18	332	102	411	1.10e-116	346
MS.gene070259.t1	AT5G18910	53.737	281	128	2	48	328	174	452	3.29e-114	341
MS.gene070259.t1	AT3G05140	50.467	321	158	1	8	328	85	404	1.12e-110	330
MS.gene070259.t1	AT3G05140	50.467	321	158	1	8	328	133	452	2.75e-110	331
MS.gene070259.t1	AT5G10520	53.659	287	130	3	48	332	135	420	5.85e-110	329
MS.gene070259.t1	AT5G35960	54.122	279	126	2	52	330	120	396	1.41e-108	323

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 78 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGATGTATTTGCTTT+TGG	0.350798	8.2:-5938745	MS.gene070259:CDS
AAAGTATACCTCAGTCATGG+AGG	0.642170	8.2:+5938149	None:intergenic
AAATTGATATTTAACTTTAT+TGG	0.127950	8.2:+5937690	None:intergenic
AACTTTGTCAAAGACCAACA+TGG	0.658701	8.2:-5939762	MS.gene070259:CDS
AAGAAAGTATACCTCAGTCA+TGG	0.573647	8.2:+5938146	None:intergenic
AAGTATACCTCAGTCATGGA+GGG	0.649085	8.2:+5938150	None:intergenic
AATAATCCATAGAGATATCA+AGG	0.488896	8.2:-5939114	MS.gene070259:CDS
AATTGATATTTAACTTTATT+GGG	0.219499	8.2:+5937691	None:intergenic
ACAAGACATAAAATAGTTGT+TGG	0.453944	8.2:-5939182	MS.gene070259:CDS
ACTCAATTGCTCCAATAGAA+GGG	0.595821	8.2:-5938913	MS.gene070259:CDS

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGTCACCTTTGTTCAAAAT+TGG	+	chr8.2:5939261-5939280	None:intergenic	30.0%
GTTCTTCTGTTACGTAATAA+AGG	+	chr8.2:5939884-5939903	None:intergenic	30.0%
TAAGAGAAACATTTCCATGT+TGG	+	chr8.2:5937792-5937811	None:intergenic	30.0%
TACAAGGGAACATTGAAAAA+TGG	-	chr8.2:5937991-5938010	MS.gene070259:intron	30.0%
TCTGTTTCATCTATTCTTCA+TGG	-	chr8.2:5938189-5938208	MS.gene070259:CDS	30.0%
TCTTCAAATGCCATCAAAAA+AGG	-	chr8.2:5939439-5939458	MS.gene070259:CDS	30.0%
TCTTCTGTTACGTAATAAAG+GGG	+	chr8.2:5939882-5939901	None:intergenic	30.0%
TGACAAAGTTCTTCTTCATA+TGG	+	chr8.2:5937765-5937784	None:intergenic	30.0%
TTGAAGATTATAAGAACCTG+TGG	+	chr8.2:5938481-5938500	None:intergenic	30.0%
AACAAACCCATCTGAATGAT+TGG	-	chr8.2:5939138-5939157	MS.gene070259:CDS	35.0%

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	5937645	5939914	5937645	ID=MS.gene070259
chr8.2	mRNA	5937645	5939914	5937645	ID=MS.gene070259.t1;Parent=MS.gene070259
chr8.2	exon	5939710	5939914	5939710	ID=MS.gene070259.t1.exon1;Parent=MS.gene070259.t1
chr8.2	CDS	5939710	5939914	5939710	ID=cds.MS.gene070259.t1;Parent=MS.gene070259.t1
chr8.2	exon	5939349	5939603	5939349	ID=MS.gene070259.t1.exon2;Parent=MS.gene070259.t1
chr8.2	CDS	5939349	5939603	5939349	ID=cds.MS.gene070259.t1;Parent=MS.gene070259.t1
chr8.2	exon	5939076	5939233	5939076	ID=MS.gene070259.t1.exon3;Parent=MS.gene070259.t1
chr8.2	CDS	5939076	5939233	5939076	ID=cds.MS.gene070259.t1;Parent=MS.gene070259.t1
chr8.2	exon	5938905	5938984	5938905	ID=MS.gene070259.t1.exon4;Parent=MS.gene070259.t1
chr8.2	CDS	5938905	5938984	5938905	ID=cds.MS.gene070259.t1;Parent=MS.gene070259.t1
chr8.2	exon	5938675	5938810	5938675	ID=MS.gene070259.t1.exon5;Parent=MS.gene070259.t1
chr8.2	CDS	5938675	5938810	5938675	ID=cds.MS.gene070259.t1;Parent=MS.gene070259.t1
chr8.2	exon	5938158	5938307	5938158	ID=MS.gene070259.t1.exon6;Parent=MS.gene070259.t1
chr8.2	CDS	5938158	5938307	5938158	ID=cds.MS.gene070259.t1;Parent=MS.gene070259.t1
chr8.2	exon	5937645	5937725	5937645	ID=MS.gene070259.t1.exon7;Parent=MS.gene070259.t1
chr8.2	CDS	5937645	5937725	5937645	ID=cds.MS.gene070259.t1;Parent=MS.gene070259.t1

Gene Sequence

>MS.gene070259

ATGAGGTATATAAGAACAGGCAGCTTCAAGAGGCTCTTCTCATTTACCAAACGTGGTTTAGGGGAACCAGTTCTGAGTCCCAAAGGTGAAGAAAACGATAAGAGCTTGAAGATTCTTCCATATGAAGAAGAACTTTGTCAAAGACCAACATGGAAATGTTTCTCTTATGAAGAGTTGTTTGATGCTACCAACGGCTTCAACTCAGGTGATTAAGACTTGTTTCTTTTTTTGAAAATGTTCATAGTATAATATTCATGCAGTTTTTGTGAATAAAAGTTTTTTTCTTTAATTTTTTTTTTTTTTTGGTTTAGAAAATATGGTTGGAAAAGGTGGTTATGCTGAGGTTTACAAGGGAACATTGAAAAATGGTGAAGAAATTGCTGTGAAGAGATTAACACGAGCTTCAAAGGATGAAAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGAACAATTGGTCATGTTCGCCATTCCAATGTTTTGTCTCTTCTAGGATGTTGTATTGACAATGGACTTTACTTTGTTTTTGAACTATCTACAACTGGTTCTGTTTCATCTATTCTTCATGGTAACTACATAAACCTTTTTTACCTTATTTATCATAGAAAATGTTGTTTTGGTATCAAAACGTGAAATGAAAAAAAGGGTTGTTAATAGTATATGAAAATCTTGTTATATTGTAGATGAAAAATTGGCTCCTTTAGATTGGAAAACAAGACATAAAATAGTTGTTGGGACAGCGCGTGGACTTCACTACTTGCACAAAGGTTGCAAGAGGAGAATAATCCATAGAGATATCAAGGCATCAAACATTTTATTGACAAAAGATTTTGAACCACAGGTTCTTATAATCTTCAATGTTTCAAATGCTATATATATTAGTTTGTTTATTTGTTATTTTTAATGGAAGTTTTGTGTTTTGATTGTGTTAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCACAATGGACTCATCACTCAATTGCTCCAATAGAAGGGACATTTGGGTATTTTTTTCTTTTCATGTTAATATTCATTTTTTATTATTTCTTTATAAAAATAATGGTTTAATTAAAAATTGGAATGGTTTATGTTTTGTAGACATTTGGCACCAGAATACTACTTGCATGGAGTTGTGGATGAGAAAACGGATGTATTTGCTTTTGGTGTGTTCTTGCTAGAAGTCATTTCTGGTAGGAAACCTGTGGATGTGTCTCACCAAAGTTTACATAGCTGGGTAAGTAGAGTGGAGTAGACTTGCCCCACTTTTCATTGTTTTTTTCTCATTGTAAATGTCTTTTTTGGTTTCTTCTAGTACTAGGCCATAGTAGTCTTGTTTTTTACATTCATTAGTTTAATTACTTTATTTCATGTTTTTTTGGTCATCTTGGTTGTGTATAGTCACATTTCCTTGAAGTGACTCGCAGCAATAATCGTTGGATCAAAAGATTTGACGGTCCAAATTTTTATTGAACGTCAAATGTTAATCCAACAAACCCATCTGAATGATTGGGAAGTGGTGTTTTTTACATTGATGTTTAATAAATTTGTTTAATGATTTTGTATGAGCCTTGATAATTTCTTTTTTTTTTTTTAATGATTAGGCAAAACCAATTTTGAACAAAGGTGACATAGAAGAGCTGGTAGATGCAAGGCTTGAAGGAGCTTATGATGTAACACAGTTAAAGAGACTTGCCTTTGCTGCCTCTCTATGCATCCGGGCATCTTCCACTTGGCGACCCTCCATGACTGAGGTATACTTTCTTTTTGTCTTAGATTAATAATAATAATTCTTCAAATGCCATCAAAAAAGGATTACTTCTTCAAATAATATGTTCATTTATTAATATGGTTGGCTTGATTTTATTCTTTTGCTATGACAAACACCAAGTCATTCATGGAGCCCATCTAGACATTGTGTAGGGTTTGGATAAAATACTTCGTTTTTTATACATATTTAATATCTACATTACATGTGAGCTGTGTTTTTTTTTGGCCCAATTTGAACAATGATTAAGATTAACTAGTTAACTTTAATATGGTTTAATTAATAAAAAATAATATTGATTGAAATTATAACATAATCAATCAAAGAAATACTCAAAAAATCAATTCAACTTAATTTAAATACAACATAATAAGTTACTAATTAAGTTAATTAAAGAAAAATATATAAATTAATACAGTGTTATAGGTTTCCCAATAAAGTTAAATATCAATTTTTCATTGCCCCCCTTTATTACGTAACAGAAGAACTTCGTGCCTAG

Protein sequence

>MS.gene070259.t1

MRYIRTGSFKRLFSFTKRGLGEPVLSPKGEENDKSLKILPYEEELCQRPTWKCFSYEELFDATNGFNSENMVGKGGYAEVYKGTLKNGEEIAVKRLTRASKDERKEKEFLTEIGTIGHVRHSNVLSLLGCCIDNGLYFVFELSTTGSVSSILHDEKLAPLDWKTRHKIVVGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDVSHQSLHSWAKPILNKGDIEELVDARLEGAYDVTQLKRLAFAASLCIRASSTWRPSMTECYRFPNKVKYQFFIAPLYYVTEELRA