Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070297.t1 | RHN67438.1 | 93.9 | 342 | 21 | 0 | 1 | 342 | 5 | 346 | 5.40E-151 | 543.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070297.t1 | Q16VW9 | 25.0 | 260 | 182 | 2 | 70 | 326 | 317 | 566 | 1.3e-15 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070297.t1 | A0A396IS03 | 93.9 | 342 | 21 | 0 | 1 | 342 | 5 | 346 | 3.9e-151 | 543.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06011 | MS.gene070297 | 0.806904 | 6.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070297.t1 | AT1G55830 | 50.177 | 283 | 136 | 3 | 50 | 329 | 77 | 357 | 3.46e-76 | 239 |
| MS.gene070297.t1 | AT1G55830 | 50.177 | 283 | 136 | 3 | 50 | 329 | 123 | 403 | 1.13e-75 | 239 |
| MS.gene070297.t1 | AT1G55830 | 50.177 | 283 | 136 | 3 | 50 | 329 | 204 | 484 | 1.00e-74 | 239 |
Find 73 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACTGTGCCTGCTATTC+AGG | 0.092060 | 3.3:+48723599 | None:intergenic |
| ATATTTGTTCGAAACCTTTA+TGG | 0.153435 | 3.3:+48723770 | None:intergenic |
| TTGCTGGTACTTCCTATTTC+AGG | 0.167483 | 3.3:+48725947 | None:intergenic |
| ATCTTGATGCCGTTATTATT+AGG | 0.186559 | 3.3:-48723633 | MS.gene070297:CDS |
| GCTGCACTTCTCTCAACTTT+TGG | 0.190244 | 3.3:+48724786 | None:intergenic |
| TGTATTAAATGTAAATAAAT+TGG | 0.232598 | 3.3:-48725861 | MS.gene070297:CDS |
| TGGAGCATTGCTTGTGCATC+TGG | 0.278823 | 3.3:+48724806 | None:intergenic |
| ATGTCCGATGCAAGCGTTCA+TGG | 0.318957 | 3.3:+48724044 | None:intergenic |
| CTTTCTAATTTCAGATGAAA+TGG | 0.334504 | 3.3:+48724751 | None:intergenic |
| GAAGAGAATCCTTCTCCTAT+TGG | 0.351542 | 3.3:-48725797 | MS.gene070297:CDS |
| CAAGTATTTGTTCAGTCAAC+TGG | 0.351601 | 3.3:+48725333 | None:intergenic |
| TCTTGATGCCGTTATTATTA+GGG | 0.352348 | 3.3:-48723632 | MS.gene070297:CDS |
| GAGACACAGACACCTGAAAT+AGG | 0.358041 | 3.3:-48725959 | MS.gene070297:CDS |
| TTGCTGACGAAATGGTCTTT+AGG | 0.362563 | 3.3:-48724015 | MS.gene070297:intron |
| TTCAAAACTCCTTGCAGATC+TGG | 0.363132 | 3.3:-48724206 | MS.gene070297:CDS |
| CTTGCTCAAATCTAAGCTTC+TGG | 0.373193 | 3.3:+48723666 | None:intergenic |
| AGGAAATCACCTTTCGACTT+TGG | 0.379570 | 3.3:-48725306 | MS.gene070297:CDS |
| TGATGGACATTTGACAGTTT+CGG | 0.385214 | 3.3:-48725774 | MS.gene070297:CDS |
| GATGAAAGCAGCAGCTGAAA+TGG | 0.388033 | 3.3:-48725393 | MS.gene070297:CDS |
| GGAGTTGGATTCGTCTTTGT+TGG | 0.388175 | 3.3:+48725904 | None:intergenic |
| AGAAACTAGGGAGGTTCAAT+TGG | 0.391045 | 3.3:-48724080 | MS.gene070297:CDS |
| ATGCCGGAAGAGATTCATTT+GGG | 0.412922 | 3.3:-48725823 | MS.gene070297:CDS |
| AGTTCTCTTTCTCTCTTCCA+AGG | 0.423768 | 3.3:+48724856 | None:intergenic |
| ATCTGAATATGAAATGAAAC+TGG | 0.425226 | 3.3:-48723707 | MS.gene070297:CDS |
| ACTGATAGAAGCGTCATTGC+TGG | 0.432811 | 3.3:+48725931 | None:intergenic |
| GGAGCATCTTGAACAAGAAT+TGG | 0.433090 | 3.3:-48725420 | MS.gene070297:CDS |
| GATGCCGGAAGAGATTCATT+TGG | 0.433703 | 3.3:-48725824 | MS.gene070297:CDS |
| CAAATCTAAGCTTCTGGAAG+TGG | 0.434093 | 3.3:+48723672 | None:intergenic |
| TCAACTGTGCCTGCTATTCA+GGG | 0.443246 | 3.3:+48723600 | None:intergenic |
| CAATTCATCATTGACGGAGT+TGG | 0.443992 | 3.3:+48725889 | None:intergenic |
| TTTGACAGTTTCGGAACAAA+AGG | 0.448768 | 3.3:-48725765 | MS.gene070297:intron |
| ATATGCTGTTGCTGACGAAA+TGG | 0.462043 | 3.3:-48724023 | MS.gene070297:CDS |
| ACTATTCAATTCATCATTGA+CGG | 0.462709 | 3.3:+48725883 | None:intergenic |
| CTCCTGGTAAACATCCATAA+AGG | 0.471718 | 3.3:-48723784 | MS.gene070297:CDS |
| CTCCTCAATACGGTGAGTAT+AGG | 0.473750 | 3.3:+48724153 | None:intergenic |
| TTCATCTTCCCTAATAATAA+CGG | 0.494196 | 3.3:+48723624 | None:intergenic |
| GTTCTCTTTCTCTCTTCCAA+GGG | 0.495077 | 3.3:+48724857 | None:intergenic |
| AATCCCAAATGAATCTCTTC+CGG | 0.496473 | 3.3:+48725820 | None:intergenic |
| CAATGACGCTTCTATCAGTC+AGG | 0.497616 | 3.3:-48725927 | MS.gene070297:CDS |
| GTCAAATGTCCATCACCAAT+AGG | 0.499274 | 3.3:+48725782 | None:intergenic |
| AGCAGCAGAAAGTAGCATCT+AGG | 0.502696 | 3.3:-48724180 | MS.gene070297:CDS |
| AACCTTTATGGATGTTTACC+AGG | 0.508128 | 3.3:+48723782 | None:intergenic |
| AAAGTTGAGAGAAGTGCAGC+AGG | 0.508410 | 3.3:-48724783 | MS.gene070297:CDS |
| AAGATGAACCCCTGAATAGC+AGG | 0.508972 | 3.3:-48723609 | MS.gene070297:CDS |
| GAAAGATCCCACAGGACAGC+AGG | 0.509791 | 3.3:-48723815 | MS.gene070297:CDS |
| TTTCATCTGAAATTAGAAAG+AGG | 0.512433 | 3.3:-48724748 | MS.gene070297:intron |
| ACTGAACAAATACTTGCTAA+AGG | 0.520911 | 3.3:-48725326 | MS.gene070297:CDS |
| AGAGGATCTTAAAAGAAACT+AGG | 0.523004 | 3.3:-48724093 | MS.gene070297:CDS |
| GGATGCTATAAGAAAACCCT+TGG | 0.525745 | 3.3:-48724873 | MS.gene070297:CDS |
| TTTGTTCAGTCAACTGGTCA+AGG | 0.534400 | 3.3:+48725339 | None:intergenic |
| AATCCTTCTCCTATTGGTGA+TGG | 0.536191 | 3.3:-48725791 | MS.gene070297:CDS |
| AATGTAAATAAATTGGACAT+AGG | 0.540779 | 3.3:-48725854 | MS.gene070297:CDS |
| GAGGATCTTAAAAGAAACTA+GGG | 0.541670 | 3.3:-48724092 | MS.gene070297:CDS |
| TCTCTCTCTCACCAGGGAGG+AGG | 0.542937 | 3.3:-48724233 | MS.gene070297:intron |
| ATCCTATACTCACCGTATTG+AGG | 0.544325 | 3.3:-48724155 | MS.gene070297:CDS |
| TTTCGACTTTGGAGTCAGAA+TGG | 0.550997 | 3.3:-48725295 | MS.gene070297:intron |
| CTTATAAACCTGCTGTCCTG+TGG | 0.557238 | 3.3:+48723807 | None:intergenic |
| GACATAGGAGATGTTGATGC+CGG | 0.559677 | 3.3:-48725839 | MS.gene070297:CDS |
| ACAGCAGGTTTATAAGCTCC+TGG | 0.560649 | 3.3:-48723800 | MS.gene070297:CDS |
| AGAGAGAAAGAGAACTCTTG+AGG | 0.572980 | 3.3:-48724849 | MS.gene070297:CDS |
| TTATAAACCTGCTGTCCTGT+GGG | 0.580986 | 3.3:+48723808 | None:intergenic |
| AACTGTTAGAAGTTCAGAAG+CGG | 0.586657 | 3.3:-48725441 | MS.gene070297:CDS |
| CTATCCATGAACGCTTGCAT+CGG | 0.591744 | 3.3:-48724048 | MS.gene070297:CDS |
| TGTCCATCACCAATAGGAGA+AGG | 0.595695 | 3.3:+48725788 | None:intergenic |
| TTCAGTCAACTGGTCAAGGT+AGG | 0.603913 | 3.3:+48725343 | None:intergenic |
| GGTAGGAGTCAACAGACTGT+TGG | 0.609116 | 3.3:+48725360 | None:intergenic |
| GAAGCAAAGAAAGATCCCAC+AGG | 0.618051 | 3.3:-48723823 | MS.gene070297:CDS |
| AACAAGATGCTGATATTGAG+AGG | 0.619407 | 3.3:-48724111 | MS.gene070297:CDS |
| TCTAAGCTTCTGGAAGTGGA+AGG | 0.631390 | 3.3:+48723676 | None:intergenic |
| GCTTCTGGAAGTGGAAGGTG+TGG | 0.641448 | 3.3:+48723681 | None:intergenic |
| CAACTGTGCCTGCTATTCAG+GGG | 0.641941 | 3.3:+48723601 | None:intergenic |
| ATTCTGACTCCAAAGTCGAA+AGG | 0.670913 | 3.3:+48725297 | None:intergenic |
| GATCTTAAAAGAAACTAGGG+AGG | 0.677247 | 3.3:-48724089 | MS.gene070297:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTAAATGTAAATAAAT+TGG | - | chr3.3:48723701-48723720 | MS.gene070297:CDS | 10.0% |
| !! | ATTACAAAGTAAAGATATAA+TGG | + | chr3.3:48725148-48725167 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTTTTTTCTTTCA+TGG | - | chr3.3:48725655-48725674 | MS.gene070297:intron | 15.0% |
| !! | AATGTAAATAAATTGGACAT+AGG | - | chr3.3:48723708-48723727 | MS.gene070297:CDS | 20.0% |
| !! | AATTTCTTCTTTATTGGAAA+GGG | + | chr3.3:48724511-48724530 | None:intergenic | 20.0% |
| !! | ACTGATATATATCAAAATTC+AGG | - | chr3.3:48724076-48724095 | MS.gene070297:CDS | 20.0% |
| !! | CTGATATATATCAAAATTCA+GGG | - | chr3.3:48724077-48724096 | MS.gene070297:CDS | 20.0% |
| !! | TATGTCAATTTCTTCTTTAT+TGG | + | chr3.3:48724517-48724536 | None:intergenic | 20.0% |
| !! | TCTATTATATTAGGTAAATC+CGG | + | chr3.3:48725186-48725205 | None:intergenic | 20.0% |
| !! | TGATATATATCAAAATTCAG+GGG | - | chr3.3:48724078-48724097 | MS.gene070297:CDS | 20.0% |
| !!! | CATGTTTTATAGTTTTGTTT+CGG | - | chr3.3:48724939-48724958 | MS.gene070297:intron | 20.0% |
| ! | AATGAACTATACTTGGAATT+TGG | + | chr3.3:48724847-48724866 | None:intergenic | 25.0% |
| ! | ACTATTCAATTCATCATTGA+CGG | + | chr3.3:48723682-48723701 | None:intergenic | 25.0% |
| ! | AGAGGCTTATAATGTATATT+CGG | + | chr3.3:48724883-48724902 | None:intergenic | 25.0% |
| ! | ATATTTGTTCGAAACCTTTA+TGG | + | chr3.3:48725795-48725814 | None:intergenic | 25.0% |
| ! | ATCTGAATATGAAATGAAAC+TGG | - | chr3.3:48725855-48725874 | MS.gene070297:CDS | 25.0% |
| ! | ATGTGCAAACTTGAAATATA+TGG | - | chr3.3:48724002-48724021 | MS.gene070297:intron | 25.0% |
| ! | ATTCTGTGCATATGAAATAT+CGG | + | chr3.3:48724592-48724611 | None:intergenic | 25.0% |
| ! | CAAGTAAAATGAACTATACT+TGG | + | chr3.3:48724854-48724873 | None:intergenic | 25.0% |
| ! | CAATTTCTTCTTTATTGGAA+AGG | + | chr3.3:48724512-48724531 | None:intergenic | 25.0% |
| ! | CTTTCTAATTTCAGATGAAA+TGG | + | chr3.3:48724814-48724833 | None:intergenic | 25.0% |
| ! | GAAAAGATTGTTATATTCGA+TGG | - | chr3.3:48724649-48724668 | MS.gene070297:intron | 25.0% |
| ! | TTCATCTTCCCTAATAATAA+CGG | + | chr3.3:48725941-48725960 | None:intergenic | 25.0% |
| ! | TTCTACACATTTCATATGTT+TGG | + | chr3.3:48723926-48723945 | None:intergenic | 25.0% |
| !! | TTTCATCTGAAATTAGAAAG+AGG | - | chr3.3:48724814-48724833 | MS.gene070297:CDS | 25.0% |
| !! | TTTTTGTAATCTCCTCAATA+CGG | + | chr3.3:48725422-48725441 | None:intergenic | 25.0% |
| !!! | TTATAGTTTTGTTTCGGAAT+TGG | - | chr3.3:48724945-48724964 | MS.gene070297:intron | 25.0% |
| AGAGAGAATGTAAGTCAATA+AGG | + | chr3.3:48725308-48725327 | None:intergenic | 30.0% | |
| AGAGGATCTTAAAAGAAACT+AGG | - | chr3.3:48725469-48725488 | MS.gene070297:intron | 30.0% | |
| ATCGTGTAATCATATTTACC+AGG | - | chr3.3:48725270-48725289 | MS.gene070297:intron | 30.0% | |
| ATCTTGATGCCGTTATTATT+AGG | - | chr3.3:48725929-48725948 | MS.gene070297:CDS | 30.0% | |
| CACACTTGGTCTATTATATT+AGG | + | chr3.3:48725195-48725214 | None:intergenic | 30.0% | |
| GAGGATCTTAAAAGAAACTA+GGG | - | chr3.3:48725470-48725489 | MS.gene070297:intron | 30.0% | |
| GAGGCTTATAATGTATATTC+GGG | + | chr3.3:48724882-48724901 | None:intergenic | 30.0% | |
| TAAGCATAACTTCTTTGACT+GGG | + | chr3.3:48723868-48723887 | None:intergenic | 30.0% | |
| TAATAGAATCACAACTACAC+CGG | - | chr3.3:48725164-48725183 | MS.gene070297:intron | 30.0% | |
| TCATTTAAGCGATACTTGAT+GGG | + | chr3.3:48725015-48725034 | None:intergenic | 30.0% | |
| TCTTGATGCCGTTATTATTA+GGG | - | chr3.3:48725930-48725949 | MS.gene070297:CDS | 30.0% | |
| TTAAGCATAACTTCTTTGAC+TGG | + | chr3.3:48723869-48723888 | None:intergenic | 30.0% | |
| TTCATTTAAGCGATACTTGA+TGG | + | chr3.3:48725016-48725035 | None:intergenic | 30.0% | |
| ! | ACTGAACAAATACTTGCTAA+AGG | - | chr3.3:48724236-48724255 | MS.gene070297:intron | 30.0% |
| ! | ATATTCGATGGATTTCAATG+TGG | - | chr3.3:48724661-48724680 | MS.gene070297:intron | 30.0% |
| !! | AGCACAACTCTAGAATTATT+CGG | - | chr3.3:48724473-48724492 | MS.gene070297:intron | 30.0% |
| !! | AGTTGAAATTTTGACACACT+TGG | + | chr3.3:48725209-48725228 | None:intergenic | 30.0% |
| !! | TCTCTTATTGGCTTAAATCA+AGG | + | chr3.3:48724419-48724438 | None:intergenic | 30.0% |
| AACAAGATGCTGATATTGAG+AGG | - | chr3.3:48725451-48725470 | MS.gene070297:CDS | 35.0% | |
| AACCTTTATGGATGTTTACC+AGG | + | chr3.3:48725783-48725802 | None:intergenic | 35.0% | |
| AACTGTTAGAAGTTCAGAAG+CGG | - | chr3.3:48724121-48724140 | MS.gene070297:CDS | 35.0% | |
| AATCCCAAATGAATCTCTTC+CGG | + | chr3.3:48723745-48723764 | None:intergenic | 35.0% | |
| ATACTTGATGGGAATCAAGA+AGG | + | chr3.3:48725004-48725023 | None:intergenic | 35.0% | |
| ATCTCATCTAGTTAAGCATC+AGG | + | chr3.3:48724051-48724070 | None:intergenic | 35.0% | |
| CAAGTATTTGTTCAGTCAAC+TGG | + | chr3.3:48724232-48724251 | None:intergenic | 35.0% | |
| CTTACAAATGCATGCATTCA+TGG | + | chr3.3:48724563-48724582 | None:intergenic | 35.0% | |
| GATCTTAAAAGAAACTAGGG+AGG | - | chr3.3:48725473-48725492 | MS.gene070297:intron | 35.0% | |
| GCAATATCTCTACAAACACA+TGG | + | chr3.3:48725625-48725644 | None:intergenic | 35.0% | |
| TCTCTAACACTCTCTCTTAT+TGG | + | chr3.3:48724431-48724450 | None:intergenic | 35.0% | |
| TGCAGCAAGCTTCAATATTT+GGG | - | chr3.3:48725102-48725121 | MS.gene070297:intron | 35.0% | |
| TTCACATTCTTACCTCTACA+GGG | - | chr3.3:48725717-48725736 | MS.gene070297:intron | 35.0% | |
| TTTCACATTCTTACCTCTAC+AGG | - | chr3.3:48725716-48725735 | MS.gene070297:intron | 35.0% | |
| TTTGACAGTTTCGGAACAAA+AGG | - | chr3.3:48723797-48723816 | MS.gene070297:CDS | 35.0% | |
| TTTGTAACAGAGAGATGAAG+AGG | - | chr3.3:48725589-48725608 | MS.gene070297:intron | 35.0% | |
| ! | ATCAGCTGCAAGAATTTTCT+CGG | + | chr3.3:48725818-48725837 | None:intergenic | 35.0% |
| ! | TGATGGACATTTGACAGTTT+CGG | - | chr3.3:48723788-48723807 | MS.gene070297:CDS | 35.0% |
| !! | CACAACTCTAGAATTATTCG+GGG | - | chr3.3:48724475-48724494 | MS.gene070297:intron | 35.0% |
| !! | CTTATTGGCTTAAATCAAGG+TGG | + | chr3.3:48724416-48724435 | None:intergenic | 35.0% |
| !! | GCACAACTCTAGAATTATTC+GGG | - | chr3.3:48724474-48724493 | MS.gene070297:intron | 35.0% |
| !!! | TAGTTTTGTTTCGGAATTGG+TGG | - | chr3.3:48724948-48724967 | MS.gene070297:intron | 35.0% |
| AATCCTTCTCCTATTGGTGA+TGG | - | chr3.3:48723771-48723790 | MS.gene070297:CDS | 40.0% | |
| AGAAACTAGGGAGGTTCAAT+TGG | - | chr3.3:48725482-48725501 | MS.gene070297:intron | 40.0% | |
| AGAGAGAAAGAGAACTCTTG+AGG | - | chr3.3:48724713-48724732 | MS.gene070297:intron | 40.0% | |
| AGGAAATCACCTTTCGACTT+TGG | - | chr3.3:48724256-48724275 | MS.gene070297:intron | 40.0% | |
| AGTTCTCTTTCTCTCTTCCA+AGG | + | chr3.3:48724709-48724728 | None:intergenic | 40.0% | |
| ATAAGGCATATTCGTCATCC+TGG | + | chr3.3:48725291-48725310 | None:intergenic | 40.0% | |
| ATATGCTGTTGCTGACGAAA+TGG | - | chr3.3:48725539-48725558 | MS.gene070297:intron | 40.0% | |
| ATCCTATACTCACCGTATTG+AGG | - | chr3.3:48725407-48725426 | MS.gene070297:CDS | 40.0% | |
| ATGCCGGAAGAGATTCATTT+GGG | - | chr3.3:48723739-48723758 | MS.gene070297:CDS | 40.0% | |
| ATGGATTTCAATGTGGTGCA+GGG | - | chr3.3:48724668-48724687 | MS.gene070297:intron | 40.0% | |
| ATTCTGACTCCAAAGTCGAA+AGG | + | chr3.3:48724268-48724287 | None:intergenic | 40.0% | |
| CAATTCATCATTGACGGAGT+TGG | + | chr3.3:48723676-48723695 | None:intergenic | 40.0% | |
| CAGCAAGCTTCAATATTTGG+GGG | - | chr3.3:48725104-48725123 | MS.gene070297:intron | 40.0% | |
| CTCAACGAATTTCTCTAGCA+AGG | + | chr3.3:48724916-48724935 | None:intergenic | 40.0% | |
| CTCCTGGTAAACATCCATAA+AGG | - | chr3.3:48725778-48725797 | MS.gene070297:CDS | 40.0% | |
| CTTGCTCAAATCTAAGCTTC+TGG | + | chr3.3:48725899-48725918 | None:intergenic | 40.0% | |
| GAAATGGGTCTCACTTAAAG+TGG | + | chr3.3:48724380-48724399 | None:intergenic | 40.0% | |
| GAAGAGAATCCTTCTCCTAT+TGG | - | chr3.3:48723765-48723784 | MS.gene070297:CDS | 40.0% | |
| GCAGCAAGCTTCAATATTTG+GGG | - | chr3.3:48725103-48725122 | MS.gene070297:intron | 40.0% | |
| GGATGCTATAAGAAAACCCT+TGG | - | chr3.3:48724689-48724708 | MS.gene070297:intron | 40.0% | |
| GTCAAATGTCCATCACCAAT+AGG | + | chr3.3:48723783-48723802 | None:intergenic | 40.0% | |
| GTGCAGCAAGCTTCAATATT+TGG | - | chr3.3:48725101-48725120 | MS.gene070297:intron | 40.0% | |
| GTTCTCTTTCTCTCTTCCAA+GGG | + | chr3.3:48724708-48724727 | None:intergenic | 40.0% | |
| TAGCAAGGACTTGTAAGAAG+AGG | + | chr3.3:48724901-48724920 | None:intergenic | 40.0% | |
| TGAGACCCATTTCCAAAGTT+GGG | - | chr3.3:48724387-48724406 | MS.gene070297:intron | 40.0% | |
| TTATAAACCTGCTGTCCTGT+GGG | + | chr3.3:48725757-48725776 | None:intergenic | 40.0% | |
| TTCAAAACTCCTTGCAGATC+TGG | - | chr3.3:48725356-48725375 | MS.gene070297:CDS | 40.0% | |
| TTGCTGACGAAATGGTCTTT+AGG | - | chr3.3:48725547-48725566 | MS.gene070297:intron | 40.0% | |
| TTGCTGGTACTTCCTATTTC+AGG | + | chr3.3:48723618-48723637 | None:intergenic | 40.0% | |
| TTTGTTCAGTCAACTGGTCA+AGG | + | chr3.3:48724226-48724245 | None:intergenic | 40.0% | |
| ! | CAAATCTAAGCTTCTGGAAG+TGG | + | chr3.3:48725893-48725912 | None:intergenic | 40.0% |
| ! | GGAGCATCTTGAACAAGAAT+TGG | - | chr3.3:48724142-48724161 | MS.gene070297:CDS | 40.0% |
| ! | GTCTAAAGAAAAGAAGCGCA+CGG | + | chr3.3:48724029-48724048 | None:intergenic | 40.0% |
| ! | TCTAAAGAAAAGAAGCGCAC+GGG | + | chr3.3:48724028-48724047 | None:intergenic | 40.0% |
| !! | AATATTGAAGCTTGCTGCAC+TGG | + | chr3.3:48725101-48725120 | None:intergenic | 40.0% |
| !! | TTTCGACTTTGGAGTCAGAA+TGG | - | chr3.3:48724267-48724286 | MS.gene070297:intron | 40.0% |
| AAGATGAACCCCTGAATAGC+AGG | - | chr3.3:48725953-48725972 | MS.gene070297:CDS | 45.0% | |
| ACAGCAGGTTTATAAGCTCC+TGG | - | chr3.3:48725762-48725781 | MS.gene070297:intron | 45.0% | |
| AGCAGCAGAAAGTAGCATCT+AGG | - | chr3.3:48725382-48725401 | MS.gene070297:CDS | 45.0% | |
| ATGGGTCTCACTTAAAGTGG+TGG | + | chr3.3:48724377-48724396 | None:intergenic | 45.0% | |
| CAATGACGCTTCTATCAGTC+AGG | - | chr3.3:48723635-48723654 | MS.gene070297:CDS | 45.0% | |
| CTATCCATGAACGCTTGCAT+CGG | - | chr3.3:48725514-48725533 | MS.gene070297:intron | 45.0% | |
| CTCAAACTCTCTCGTAGGAA+AGG | + | chr3.3:48724625-48724644 | None:intergenic | 45.0% | |
| CTCCTCAATACGGTGAGTAT+AGG | + | chr3.3:48725412-48725431 | None:intergenic | 45.0% | |
| CTTATAAACCTGCTGTCCTG+TGG | + | chr3.3:48725758-48725777 | None:intergenic | 45.0% | |
| CTTTCTTTGCTTCCCTGTAG+AGG | + | chr3.3:48725732-48725751 | None:intergenic | 45.0% | |
| GAAGCAAAGAAAGATCCCAC+AGG | - | chr3.3:48725739-48725758 | MS.gene070297:intron | 45.0% | |
| GACATAGGAGATGTTGATGC+CGG | - | chr3.3:48723723-48723742 | MS.gene070297:CDS | 45.0% | |
| GAGACACAGACACCTGAAAT+AGG | - | chr3.3:48723603-48723622 | MS.gene070297:CDS | 45.0% | |
| GAGACCCATTTCCAAAGTTG+GGG | - | chr3.3:48724388-48724407 | MS.gene070297:intron | 45.0% | |
| GATGAAAGCAGCAGCTGAAA+TGG | - | chr3.3:48724169-48724188 | MS.gene070297:CDS | 45.0% | |
| GATGCCGGAAGAGATTCATT+TGG | - | chr3.3:48723738-48723757 | MS.gene070297:CDS | 45.0% | |
| GGAGTTGGATTCGTCTTTGT+TGG | + | chr3.3:48723661-48723680 | None:intergenic | 45.0% | |
| GTGAGACCCATTTCCAAAGT+TGG | - | chr3.3:48724386-48724405 | MS.gene070297:intron | 45.0% | |
| TCAACTGTGCCTGCTATTCA+GGG | + | chr3.3:48725965-48725984 | None:intergenic | 45.0% | |
| TCTCACACTCACTCTCGTAT+TGG | - | chr3.3:48724329-48724348 | MS.gene070297:intron | 45.0% | |
| TGGGTCTCACTTAAAGTGGT+GGG | + | chr3.3:48724376-48724395 | None:intergenic | 45.0% | |
| TGTCCATCACCAATAGGAGA+AGG | + | chr3.3:48723777-48723796 | None:intergenic | 45.0% | |
| TTCAGTCAACTGGTCAAGGT+AGG | + | chr3.3:48724222-48724241 | None:intergenic | 45.0% | |
| ! | AAAGTTGAGAGAAGTGCAGC+AGG | - | chr3.3:48724779-48724798 | MS.gene070297:CDS | 45.0% |
| ! | GATGGATTTCAATGTGGTGC+AGG | - | chr3.3:48724667-48724686 | MS.gene070297:intron | 45.0% |
| ! | GCTGCACTTCTCTCAACTTT+TGG | + | chr3.3:48724779-48724798 | None:intergenic | 45.0% |
| ! | GGATCCCCAACTTTGGAAAT+GGG | + | chr3.3:48724395-48724414 | None:intergenic | 45.0% |
| ! | TCTAAGCTTCTGGAAGTGGA+AGG | + | chr3.3:48725889-48725908 | None:intergenic | 45.0% |
| ! | TGGATCCCCAACTTTGGAAA+TGG | + | chr3.3:48724396-48724415 | None:intergenic | 45.0% |
| ! | TTTTGAATGTTCCTCCTCCC+TGG | + | chr3.3:48725343-48725362 | None:intergenic | 45.0% |
| !! | ACTGATAGAAGCGTCATTGC+TGG | + | chr3.3:48723634-48723653 | None:intergenic | 45.0% |
| !! | GACTTTGGAGTCAGAATGGT+AGG | - | chr3.3:48724271-48724290 | MS.gene070297:intron | 45.0% |
| ATGTCCGATGCAAGCGTTCA+TGG | + | chr3.3:48725521-48725540 | None:intergenic | 50.0% | |
| CAACTGTGCCTGCTATTCAG+GGG | + | chr3.3:48725964-48725983 | None:intergenic | 50.0% | |
| CAGTGCTCAAACTCTCTCGT+AGG | + | chr3.3:48724630-48724649 | None:intergenic | 50.0% | |
| GGTAGGAGTCAACAGACTGT+TGG | + | chr3.3:48724205-48724224 | None:intergenic | 50.0% | |
| TCAAGGTGGATCCCCAACTT+TGG | + | chr3.3:48724402-48724421 | None:intergenic | 50.0% | |
| TCTCTCTCTCTCTCTCACCA+GGG | - | chr3.3:48725323-48725342 | MS.gene070297:CDS | 50.0% | |
| !! | TGGAGCATTGCTTGTGCATC+TGG | + | chr3.3:48724759-48724778 | None:intergenic | 50.0% |
| !!! | GCTGCTTTTCCAGATCTGCA+AGG | + | chr3.3:48725368-48725387 | None:intergenic | 50.0% |
| CTCTCTCTCTCTCTCTCACC+AGG | - | chr3.3:48725322-48725341 | MS.gene070297:CDS | 55.0% | |
| GAAAGATCCCACAGGACAGC+AGG | - | chr3.3:48725747-48725766 | MS.gene070297:intron | 55.0% | |
| ! | GCTTCTGGAAGTGGAAGGTG+TGG | + | chr3.3:48725884-48725903 | None:intergenic | 55.0% |
| CTCTCTCTCTCTCACCAGGG+AGG | - | chr3.3:48725326-48725345 | MS.gene070297:CDS | 60.0% | |
| TCTCTCTCTCACCAGGGAGG+AGG | - | chr3.3:48725329-48725348 | MS.gene070297:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48723600 | 48725984 | 48723600 | ID=MS.gene070297 |
| chr3.3 | mRNA | 48723600 | 48725984 | 48723600 | ID=MS.gene070297.t1;Parent=MS.gene070297 |
| chr3.3 | exon | 48725766 | 48725984 | 48725766 | ID=MS.gene070297.t1.exon1;Parent=MS.gene070297.t1 |
| chr3.3 | CDS | 48725766 | 48725984 | 48725766 | ID=cds.MS.gene070297.t1;Parent=MS.gene070297.t1 |
| chr3.3 | exon | 48725296 | 48725486 | 48725296 | ID=MS.gene070297.t1.exon2;Parent=MS.gene070297.t1 |
| chr3.3 | CDS | 48725296 | 48725486 | 48725296 | ID=cds.MS.gene070297.t1;Parent=MS.gene070297.t1 |
| chr3.3 | exon | 48724749 | 48724895 | 48724749 | ID=MS.gene070297.t1.exon3;Parent=MS.gene070297.t1 |
| chr3.3 | CDS | 48724749 | 48724895 | 48724749 | ID=cds.MS.gene070297.t1;Parent=MS.gene070297.t1 |
| chr3.3 | exon | 48724016 | 48724240 | 48724016 | ID=MS.gene070297.t1.exon4;Parent=MS.gene070297.t1 |
| chr3.3 | CDS | 48724016 | 48724240 | 48724016 | ID=cds.MS.gene070297.t1;Parent=MS.gene070297.t1 |
| chr3.3 | exon | 48723600 | 48723846 | 48723600 | ID=MS.gene070297.t1.exon5;Parent=MS.gene070297.t1 |
| chr3.3 | CDS | 48723600 | 48723846 | 48723600 | ID=cds.MS.gene070297.t1;Parent=MS.gene070297.t1 |
| Gene Sequence |
| Protein sequence |
