Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070316.t1 | XP_003600354.1 | 89.5 | 746 | 34 | 4 | 5 | 707 | 3 | 747 | 0.00E+00 | 1330.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070316.t1 | Q8VZK9 | 54.6 | 727 | 274 | 10 | 12 | 698 | 18 | 728 | 9.3e-223 | 774.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070316.t1 | G7IV17 | 89.5 | 746 | 34 | 4 | 5 | 707 | 3 | 747 | 0.0e+00 | 1330.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05667 | MS.gene070316 | 0.877957 | 4.14E-69 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070316.t1 | MTR_3g060280 | 89.544 | 746 | 34 | 4 | 5 | 707 | 3 | 747 | 0.0 | 1337 |
MS.gene070316.t1 | MTR_3g060280 | 86.738 | 558 | 30 | 4 | 5 | 519 | 3 | 559 | 0.0 | 965 |
MS.gene070316.t1 | MTR_3g060280 | 86.535 | 557 | 31 | 4 | 5 | 518 | 3 | 558 | 0.0 | 964 |
MS.gene070316.t1 | MTR_3g060240 | 63.208 | 742 | 213 | 9 | 6 | 697 | 2 | 733 | 0.0 | 934 |
MS.gene070316.t1 | MTR_3g060220 | 62.737 | 738 | 213 | 10 | 10 | 698 | 6 | 730 | 0.0 | 913 |
MS.gene070316.t1 | MTR_3g060220 | 62.652 | 739 | 213 | 10 | 10 | 698 | 6 | 731 | 0.0 | 913 |
MS.gene070316.t1 | MTR_3g060280 | 84.091 | 440 | 26 | 4 | 5 | 401 | 3 | 441 | 0.0 | 726 |
MS.gene070316.t1 | MTR_4g088225 | 36.335 | 633 | 365 | 8 | 79 | 683 | 99 | 721 | 1.23e-127 | 396 |
MS.gene070316.t1 | MTR_4g088225 | 36.349 | 630 | 363 | 8 | 79 | 680 | 99 | 718 | 1.18e-126 | 393 |
MS.gene070316.t1 | MTR_1g073740 | 32.123 | 716 | 421 | 10 | 15 | 696 | 49 | 733 | 3.69e-124 | 387 |
MS.gene070316.t1 | MTR_2g087960 | 33.533 | 668 | 376 | 14 | 76 | 693 | 92 | 741 | 1.10e-115 | 365 |
MS.gene070316.t1 | MTR_2g087980 | 33.583 | 667 | 372 | 17 | 77 | 693 | 86 | 731 | 1.39e-113 | 359 |
MS.gene070316.t1 | MTR_3g005560 | 33.016 | 630 | 367 | 11 | 76 | 672 | 83 | 690 | 1.03e-112 | 356 |
MS.gene070316.t1 | MTR_3g450800 | 33.072 | 638 | 353 | 13 | 76 | 672 | 35 | 639 | 1.04e-112 | 354 |
MS.gene070316.t1 | MTR_0011s0020 | 32.126 | 635 | 371 | 10 | 76 | 675 | 83 | 692 | 1.79e-111 | 352 |
MS.gene070316.t1 | MTR_2g037830 | 32.171 | 631 | 375 | 9 | 76 | 675 | 83 | 691 | 6.36e-109 | 346 |
MS.gene070316.t1 | MTR_8g063270 | 31.304 | 690 | 381 | 14 | 77 | 689 | 74 | 747 | 5.47e-108 | 345 |
MS.gene070316.t1 | MTR_8g063270 | 31.304 | 690 | 381 | 14 | 77 | 689 | 279 | 952 | 6.20e-106 | 345 |
MS.gene070316.t1 | MTR_2g087900 | 33.037 | 675 | 370 | 15 | 79 | 693 | 94 | 746 | 6.20e-106 | 340 |
MS.gene070316.t1 | MTR_2g016630 | 31.876 | 709 | 368 | 19 | 79 | 689 | 257 | 948 | 4.65e-103 | 337 |
MS.gene070316.t1 | MTR_4g130510 | 30.447 | 716 | 375 | 21 | 74 | 689 | 317 | 1009 | 7.12e-100 | 330 |
MS.gene070316.t1 | MTR_2g087950 | 32.628 | 662 | 372 | 14 | 76 | 688 | 87 | 723 | 7.45e-100 | 324 |
MS.gene070316.t1 | MTR_4g050000 | 31.777 | 664 | 385 | 13 | 79 | 693 | 90 | 734 | 7.34e-99 | 321 |
MS.gene070316.t1 | MTR_2g087960 | 34.765 | 489 | 261 | 7 | 76 | 517 | 92 | 569 | 2.21e-95 | 306 |
MS.gene070316.t1 | MTR_1g069605 | 29.928 | 695 | 391 | 16 | 77 | 690 | 185 | 864 | 2.34e-94 | 312 |
MS.gene070316.t1 | MTR_4g130510 | 29.239 | 749 | 375 | 22 | 74 | 689 | 317 | 1043 | 3.20e-93 | 313 |
MS.gene070316.t1 | MTR_2g087900 | 35.091 | 493 | 249 | 10 | 79 | 515 | 94 | 571 | 4.81e-92 | 298 |
MS.gene070316.t1 | MTR_3g005560 | 35.593 | 472 | 258 | 7 | 76 | 517 | 83 | 538 | 7.38e-89 | 289 |
MS.gene070316.t1 | MTR_4g130510 | 32.402 | 537 | 265 | 12 | 74 | 518 | 317 | 847 | 1.27e-86 | 291 |
MS.gene070316.t1 | MTR_2g037830 | 36.139 | 404 | 212 | 6 | 76 | 449 | 83 | 470 | 1.59e-74 | 250 |
MS.gene070316.t1 | MTR_8g086600 | 41.275 | 298 | 147 | 6 | 79 | 353 | 272 | 564 | 9.95e-69 | 243 |
MS.gene070316.t1 | MTR_8g086600 | 28.618 | 304 | 206 | 5 | 388 | 689 | 666 | 960 | 3.65e-33 | 137 |
MS.gene070316.t1 | MTR_2g087900 | 35.714 | 378 | 173 | 9 | 79 | 401 | 94 | 456 | 1.29e-67 | 230 |
MS.gene070316.t1 | MTR_3g030040 | 40.940 | 298 | 148 | 6 | 79 | 353 | 347 | 639 | 3.71e-67 | 239 |
MS.gene070316.t1 | MTR_3g030040 | 28.972 | 321 | 211 | 9 | 374 | 689 | 741 | 1049 | 2.16e-32 | 135 |
MS.gene070316.t1 | MTR_4g130510 | 39.610 | 308 | 153 | 7 | 74 | 353 | 317 | 619 | 8.61e-67 | 234 |
MS.gene070316.t1 | MTR_1g098550 | 40.940 | 298 | 148 | 7 | 79 | 353 | 367 | 659 | 9.64e-67 | 239 |
MS.gene070316.t1 | MTR_1g098550 | 32.579 | 221 | 148 | 1 | 374 | 593 | 761 | 981 | 3.57e-32 | 134 |
MS.gene070316.t1 | MTR_1g098550 | 40.940 | 298 | 148 | 7 | 79 | 353 | 363 | 655 | 9.70e-67 | 239 |
MS.gene070316.t1 | MTR_1g098550 | 32.579 | 221 | 148 | 1 | 374 | 593 | 757 | 977 | 3.28e-32 | 134 |
MS.gene070316.t1 | MTR_8g092590 | 40.129 | 309 | 150 | 8 | 74 | 353 | 355 | 657 | 1.73e-65 | 235 |
MS.gene070316.t1 | MTR_8g092590 | 28.707 | 317 | 216 | 5 | 379 | 694 | 765 | 1072 | 1.84e-34 | 141 |
MS.gene070316.t1 | MTR_7g106680 | 40.604 | 298 | 149 | 6 | 79 | 353 | 305 | 597 | 4.63e-65 | 233 |
MS.gene070316.t1 | MTR_7g106680 | 28.135 | 327 | 220 | 7 | 370 | 692 | 691 | 1006 | 3.98e-32 | 134 |
MS.gene070316.t1 | MTR_8g037260 | 39.088 | 307 | 159 | 6 | 79 | 362 | 347 | 648 | 7.46e-65 | 233 |
MS.gene070316.t1 | MTR_8g037260 | 29.595 | 321 | 209 | 9 | 374 | 689 | 741 | 1049 | 9.24e-34 | 139 |
MS.gene070316.t1 | MTR_3g107520 | 39.933 | 298 | 151 | 6 | 79 | 353 | 357 | 649 | 6.88e-64 | 230 |
MS.gene070316.t1 | MTR_3g107520 | 32.599 | 227 | 146 | 4 | 371 | 594 | 748 | 970 | 1.39e-32 | 135 |
MS.gene070316.t1 | MTR_3g007770 | 40.584 | 308 | 150 | 7 | 74 | 353 | 304 | 606 | 1.03e-63 | 229 |
MS.gene070316.t1 | MTR_3g007770 | 28.479 | 309 | 207 | 9 | 386 | 689 | 721 | 1020 | 3.29e-30 | 128 |
MS.gene070316.t1 | MTR_2g035780 | 38.667 | 300 | 156 | 6 | 77 | 353 | 296 | 590 | 2.36e-63 | 228 |
MS.gene070316.t1 | MTR_2g035780 | 30.619 | 307 | 195 | 9 | 388 | 689 | 722 | 1015 | 1.92e-34 | 141 |
MS.gene070316.t1 | MTR_5g029190 | 35.263 | 380 | 168 | 11 | 79 | 383 | 349 | 725 | 2.08e-62 | 226 |
MS.gene070316.t1 | MTR_5g029190 | 27.564 | 312 | 215 | 8 | 385 | 694 | 798 | 1100 | 5.37e-25 | 111 |
MS.gene070316.t1 | MTR_7g116230 | 39.683 | 315 | 143 | 8 | 79 | 353 | 226 | 533 | 1.09e-60 | 219 |
MS.gene070316.t1 | MTR_1g039445 | 35.294 | 408 | 182 | 13 | 79 | 411 | 342 | 742 | 3.13e-60 | 219 |
MS.gene070316.t1 | MTR_1g039445 | 30.986 | 213 | 146 | 1 | 382 | 594 | 777 | 988 | 2.70e-24 | 109 |
MS.gene070316.t1 | MTR_3g005560 | 35.493 | 355 | 183 | 7 | 76 | 400 | 83 | 421 | 3.29e-60 | 209 |
MS.gene070316.t1 | MTR_4g077910 | 37.209 | 344 | 146 | 9 | 79 | 353 | 370 | 712 | 4.56e-60 | 219 |
MS.gene070316.t1 | MTR_4g077910 | 29.767 | 215 | 150 | 1 | 385 | 599 | 819 | 1032 | 1.07e-23 | 107 |
MS.gene070316.t1 | MTR_7g109200 | 35.775 | 355 | 155 | 9 | 79 | 363 | 394 | 745 | 1.19e-59 | 218 |
MS.gene070316.t1 | MTR_7g109200 | 26.032 | 315 | 225 | 5 | 385 | 698 | 846 | 1153 | 1.39e-24 | 110 |
MS.gene070316.t1 | MTR_1g039480 | 35.028 | 354 | 159 | 8 | 79 | 365 | 356 | 705 | 1.14e-58 | 215 |
MS.gene070316.t1 | MTR_1g039480 | 28.707 | 317 | 205 | 7 | 385 | 694 | 808 | 1110 | 1.78e-25 | 113 |
MS.gene070316.t1 | MTR_2g087900 | 38.971 | 272 | 127 | 6 | 79 | 326 | 94 | 350 | 7.80e-57 | 197 |
MS.gene070316.t1 | MTR_2g438220 | 34.582 | 347 | 156 | 9 | 79 | 355 | 256 | 601 | 1.19e-55 | 206 |
MS.gene070316.t1 | MTR_2g438220 | 26.349 | 315 | 215 | 7 | 385 | 694 | 701 | 1003 | 9.16e-25 | 110 |
MS.gene070316.t1 | MTR_3g091270 | 31.250 | 288 | 141 | 7 | 79 | 353 | 107 | 350 | 2.65e-36 | 143 |
MS.gene070316.t1 | MTR_2g087900 | 37.975 | 158 | 66 | 5 | 79 | 212 | 94 | 243 | 3.32e-24 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070316.t1 | AT1G55850 | 54.608 | 727 | 274 | 10 | 12 | 698 | 18 | 728 | 0.0 | 775 |
MS.gene070316.t1 | AT4G23990 | 39.564 | 642 | 350 | 10 | 79 | 695 | 117 | 745 | 4.87e-156 | 470 |
MS.gene070316.t1 | AT4G24000 | 37.558 | 647 | 359 | 10 | 79 | 700 | 95 | 721 | 5.73e-150 | 453 |
MS.gene070316.t1 | AT4G24010 | 38.720 | 625 | 343 | 13 | 79 | 677 | 98 | 708 | 1.26e-143 | 438 |
MS.gene070316.t1 | AT4G23990 | 37.569 | 543 | 315 | 8 | 164 | 695 | 2 | 531 | 1.63e-120 | 371 |
MS.gene070316.t1 | AT4G24000 | 34.854 | 548 | 326 | 7 | 164 | 700 | 2 | 529 | 9.24e-116 | 358 |
MS.gene070316.t1 | AT5G17420 | 30.845 | 710 | 381 | 20 | 74 | 689 | 304 | 997 | 6.40e-104 | 341 |
MS.gene070316.t1 | AT2G32530 | 31.831 | 688 | 372 | 19 | 77 | 694 | 90 | 750 | 3.16e-100 | 325 |
MS.gene070316.t1 | AT2G32540 | 32.357 | 683 | 378 | 17 | 77 | 695 | 90 | 752 | 3.01e-99 | 322 |
MS.gene070316.t1 | AT2G21770 | 29.542 | 721 | 388 | 15 | 79 | 694 | 358 | 1063 | 4.10e-97 | 323 |
MS.gene070316.t1 | AT4G15320 | 34.489 | 577 | 283 | 16 | 77 | 589 | 90 | 635 | 2.60e-96 | 314 |
MS.gene070316.t1 | AT4G15320 | 34.489 | 577 | 283 | 16 | 77 | 589 | 90 | 635 | 3.46e-96 | 314 |
MS.gene070316.t1 | AT4G15290 | 32.340 | 705 | 362 | 23 | 72 | 698 | 85 | 752 | 8.52e-96 | 313 |
MS.gene070316.t1 | AT4G15320 | 33.615 | 592 | 283 | 16 | 77 | 589 | 90 | 650 | 6.55e-94 | 308 |
MS.gene070316.t1 | AT2G32610 | 31.457 | 693 | 375 | 18 | 77 | 695 | 90 | 756 | 6.59e-94 | 308 |
MS.gene070316.t1 | AT2G32620 | 31.517 | 679 | 384 | 20 | 79 | 694 | 92 | 752 | 2.89e-93 | 306 |
MS.gene070316.t1 | AT2G32620 | 31.157 | 674 | 383 | 20 | 84 | 694 | 1 | 656 | 2.78e-91 | 298 |
MS.gene070316.t1 | AT1G32180 | 28.349 | 769 | 388 | 17 | 79 | 694 | 203 | 961 | 7.23e-84 | 285 |
MS.gene070316.t1 | AT1G32180 | 28.349 | 769 | 388 | 17 | 79 | 694 | 203 | 961 | 7.23e-84 | 285 |
MS.gene070316.t1 | AT2G32620 | 33.774 | 530 | 282 | 16 | 79 | 556 | 92 | 604 | 1.58e-82 | 274 |
MS.gene070316.t1 | AT4G15320 | 31.300 | 623 | 273 | 18 | 77 | 589 | 90 | 667 | 6.30e-82 | 276 |
MS.gene070316.t1 | AT2G32620 | 35.586 | 444 | 223 | 12 | 79 | 472 | 92 | 522 | 2.69e-77 | 258 |
MS.gene070316.t1 | AT4G15320 | 29.580 | 666 | 271 | 18 | 77 | 589 | 90 | 710 | 7.91e-77 | 263 |
MS.gene070316.t1 | AT5G05170 | 40.065 | 307 | 156 | 6 | 79 | 362 | 335 | 636 | 1.42e-67 | 241 |
MS.gene070316.t1 | AT5G05170 | 28.972 | 321 | 211 | 9 | 374 | 689 | 728 | 1036 | 1.32e-31 | 132 |
MS.gene070316.t1 | AT5G44030 | 39.203 | 301 | 155 | 7 | 76 | 353 | 9 | 304 | 4.09e-67 | 236 |
MS.gene070316.t1 | AT5G44030 | 30.154 | 325 | 211 | 8 | 370 | 689 | 428 | 741 | 1.79e-35 | 144 |
MS.gene070316.t1 | AT4G18780 | 39.867 | 301 | 153 | 6 | 76 | 353 | 257 | 552 | 1.42e-66 | 237 |
MS.gene070316.t1 | AT4G18780 | 28.086 | 324 | 221 | 6 | 386 | 706 | 658 | 972 | 9.52e-32 | 133 |
MS.gene070316.t1 | AT5G44030 | 39.203 | 301 | 155 | 7 | 76 | 353 | 288 | 583 | 1.90e-65 | 234 |
MS.gene070316.t1 | AT5G44030 | 31.068 | 309 | 197 | 8 | 386 | 689 | 723 | 1020 | 1.65e-35 | 144 |
MS.gene070316.t1 | AT4G39350 | 39.799 | 299 | 150 | 7 | 79 | 353 | 353 | 645 | 2.30e-65 | 234 |
MS.gene070316.t1 | AT4G39350 | 27.673 | 318 | 218 | 5 | 379 | 694 | 752 | 1059 | 3.52e-31 | 131 |
MS.gene070316.t1 | AT5G44030 | 39.203 | 301 | 155 | 7 | 76 | 353 | 317 | 612 | 2.36e-65 | 234 |
MS.gene070316.t1 | AT5G44030 | 31.068 | 309 | 197 | 8 | 386 | 689 | 752 | 1049 | 1.81e-35 | 144 |
MS.gene070316.t1 | AT5G64740 | 39.933 | 298 | 151 | 7 | 79 | 353 | 352 | 644 | 2.71e-65 | 234 |
MS.gene070316.t1 | AT5G64740 | 26.606 | 327 | 230 | 5 | 369 | 694 | 743 | 1060 | 2.41e-31 | 132 |
MS.gene070316.t1 | AT5G09870 | 39.597 | 298 | 152 | 7 | 79 | 353 | 340 | 632 | 3.49e-65 | 234 |
MS.gene070316.t1 | AT5G09870 | 26.911 | 327 | 229 | 5 | 369 | 694 | 728 | 1045 | 1.27e-31 | 132 |
MS.gene070316.t1 | AT4G32410 | 39.597 | 298 | 152 | 6 | 79 | 353 | 351 | 643 | 2.02e-64 | 232 |
MS.gene070316.t1 | AT4G32410 | 28.525 | 305 | 209 | 5 | 386 | 689 | 755 | 1051 | 3.47e-35 | 144 |
MS.gene070316.t1 | AT2G25540 | 37.463 | 339 | 180 | 8 | 79 | 394 | 331 | 660 | 2.04e-64 | 232 |
MS.gene070316.t1 | AT2G25540 | 29.721 | 323 | 211 | 10 | 371 | 689 | 721 | 1031 | 6.19e-33 | 137 |
MS.gene070316.t1 | AT1G02730 | 36.667 | 360 | 148 | 9 | 79 | 363 | 399 | 753 | 2.14e-61 | 223 |
MS.gene070316.t1 | AT1G02730 | 27.469 | 324 | 226 | 7 | 385 | 706 | 858 | 1174 | 1.20e-25 | 114 |
MS.gene070316.t1 | AT4G38190 | 33.661 | 407 | 182 | 11 | 79 | 411 | 353 | 745 | 3.25e-59 | 217 |
MS.gene070316.t1 | AT4G38190 | 27.129 | 317 | 222 | 7 | 382 | 697 | 780 | 1088 | 6.69e-24 | 108 |
MS.gene070316.t1 | AT3G03050 | 36.522 | 345 | 145 | 9 | 79 | 353 | 375 | 715 | 4.94e-59 | 216 |
MS.gene070316.t1 | AT3G03050 | 27.653 | 311 | 216 | 6 | 385 | 694 | 822 | 1124 | 3.63e-26 | 115 |
MS.gene070316.t1 | AT5G16910 | 35.942 | 345 | 147 | 8 | 79 | 353 | 378 | 718 | 9.50e-59 | 216 |
MS.gene070316.t1 | AT5G16910 | 27.653 | 311 | 216 | 6 | 385 | 694 | 822 | 1124 | 6.50e-26 | 114 |
MS.gene070316.t1 | AT2G33100 | 36.963 | 349 | 140 | 10 | 79 | 353 | 264 | 606 | 4.44e-57 | 210 |
MS.gene070316.t1 | AT2G33100 | 27.848 | 316 | 209 | 7 | 385 | 694 | 715 | 1017 | 4.61e-26 | 115 |
MS.gene070316.t1 | AT2G33100 | 36.963 | 349 | 140 | 10 | 79 | 353 | 264 | 606 | 4.44e-57 | 210 |
MS.gene070316.t1 | AT2G33100 | 27.848 | 316 | 209 | 7 | 385 | 694 | 715 | 1017 | 4.61e-26 | 115 |
Find 142 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCCCTTTATCTTCTTAA+AGG | 0.093516 | 3.3:-48575979 | MS.gene070316:CDS |
ATCATTGGTGGCTCTATTTC+TGG | 0.164514 | 3.3:+48583246 | None:intergenic |
TTGTTAGAGTTTGTGTTAAT+TGG | 0.211091 | 3.3:-48575557 | MS.gene070316:CDS |
TGTACATCTTTAGAGTTATC+AGG | 0.217416 | 3.3:+48577570 | None:intergenic |
TTAATTGGAGGGACATTTAA+AGG | 0.235123 | 3.3:-48575542 | MS.gene070316:CDS |
ATCTTGAGGGATGGTGGTTT+TGG | 0.253816 | 3.3:-48575263 | MS.gene070316:CDS |
TTGCAGATGGGTTTGAAATA+TGG | 0.261820 | 3.3:-48576291 | MS.gene070316:intron |
CAAACAATTCAGAATCTATA+AGG | 0.262522 | 3.3:-48577159 | MS.gene070316:CDS |
GATATTGTGCTTATTGCTTA+TGG | 0.271146 | 3.3:-48576041 | MS.gene070316:CDS |
AGCCAATGTTGTTGATTTCA+TGG | 0.271765 | 3.3:+48575121 | None:intergenic |
AGTCCTGCATGGTATGCTTT+TGG | 0.278228 | 3.3:-48576090 | MS.gene070316:CDS |
TCCACCAAGGAAGGCTTTCT+TGG | 0.282716 | 3.3:-48576199 | MS.gene070316:CDS |
GAGAAAGAAATTATGGAGTT+TGG | 0.316457 | 3.3:-48575368 | MS.gene070316:CDS |
CTAGATACTACTTCATAAAA+AGG | 0.318959 | 3.3:-48577595 | MS.gene070316:intron |
AAACACAGTGTTATCTGTTA+TGG | 0.335466 | 3.3:-48583217 | MS.gene070316:CDS |
ACTTTAAACCTCTTGCAAAA+AGG | 0.335604 | 3.3:+48583084 | None:intergenic |
GCGCCATGAGAAAGAAATTA+TGG | 0.343962 | 3.3:-48575375 | MS.gene070316:CDS |
ATATTGTGCTTATTGCTTAT+GGG | 0.353799 | 3.3:-48576040 | MS.gene070316:CDS |
TTGCAGCCATATGCTTCATC+TGG | 0.361516 | 3.3:-48583942 | MS.gene070316:CDS |
GTGATGAATATAGGCATAAC+TGG | 0.363222 | 3.3:-48576695 | MS.gene070316:CDS |
GGATGCCTTTAAGAAGATAA+AGG | 0.363479 | 3.3:+48575974 | None:intergenic |
ACTGTGTTTATTACCATCAT+TGG | 0.371404 | 3.3:+48583231 | None:intergenic |
CATACAAATATGTCCACTTC+TGG | 0.371659 | 3.3:+48583279 | None:intergenic |
CCAGTGGAGGATGTGATAAC+AGG | 0.375313 | 3.3:-48576264 | MS.gene070316:CDS |
CACAAGAGAGAATCTCTTTG+TGG | 0.382358 | 3.3:-48576729 | MS.gene070316:CDS |
GTAGAAATTGTACAGTGAAA+TGG | 0.384070 | 3.3:-48577845 | MS.gene070316:intron |
TACAATCACAGCTAAGGTTT+CGG | 0.389148 | 3.3:-48575414 | MS.gene070316:CDS |
AGAAGAAGATGGAGGAAAGT+TGG | 0.391001 | 3.3:-48583872 | MS.gene070316:intron |
TACAAAGTTGCTAAACAATT+AGG | 0.397116 | 3.3:+48576015 | None:intergenic |
GTGGAGTTCCATGGGGTAGA+TGG | 0.398525 | 3.3:-48576789 | MS.gene070316:CDS |
AGCAATATTAGTGTCCTTGA+TGG | 0.406816 | 3.3:+48583029 | None:intergenic |
GGTGGAATGACCTAAGGATA+TGG | 0.408775 | 3.3:-48575517 | MS.gene070316:CDS |
CCTTTGTTTGAAACAAAGAA+AGG | 0.419104 | 3.3:-48584006 | MS.gene070316:CDS |
ATGGGCAGAGGCAGAGGCAG+AGG | 0.420100 | 3.3:-48584039 | MS.gene070316:CDS |
TGAAGTTCAGTGATGAATAT+AGG | 0.422420 | 3.3:-48576704 | MS.gene070316:CDS |
TTTGGAGCATATGAGAAAAT+GGG | 0.423242 | 3.3:-48575245 | MS.gene070316:CDS |
AAGATAAAGGGAAGGGATGA+TGG | 0.426311 | 3.3:+48575987 | None:intergenic |
GGATTGCAAGTTATATTATG+TGG | 0.428184 | 3.3:-48575224 | MS.gene070316:CDS |
AATAAGCACAATATCCCATT+TGG | 0.430483 | 3.3:+48576049 | None:intergenic |
TTCTTGTTGAGTATAGTTTG+TGG | 0.432263 | 3.3:+48583894 | None:intergenic |
GATTTCATGGCAAGAGAACT+TGG | 0.438854 | 3.3:+48575134 | None:intergenic |
CATTATCCTTCCTTAAGAAA+AGG | 0.443655 | 3.3:+48575165 | None:intergenic |
CCACCAAGGAAGGCTTTCTT+GGG | 0.444851 | 3.3:-48576198 | MS.gene070316:CDS |
GATTAATTTGAGCCTCCAAA+TGG | 0.445383 | 3.3:-48576064 | MS.gene070316:CDS |
ATATGAAGAAAATACACAAT+GGG | 0.446174 | 3.3:-48576595 | MS.gene070316:CDS |
GCAGTCATGGGCAGAGGCAG+AGG | 0.447699 | 3.3:-48584045 | None:intergenic |
TAGCTCCAGCTTTGTAGTTG+TGG | 0.450754 | 3.3:+48577490 | None:intergenic |
AAGAAAAGGCCTTGGTATAG+AGG | 0.451242 | 3.3:+48575179 | None:intergenic |
TTGGAGGGACATTTAAAGGT+TGG | 0.451913 | 3.3:-48575538 | MS.gene070316:CDS |
CCTTCCTTAAGAAAAGGCCT+TGG | 0.452141 | 3.3:+48575171 | None:intergenic |
GGAAAGGAAGGCTTATCTAT+AGG | 0.452937 | 3.3:-48583984 | MS.gene070316:CDS |
CCCAAGAAAGCCTTCCTTGG+TGG | 0.455594 | 3.3:+48576198 | None:intergenic |
CCAATTATTACATATGCAAA+AGG | 0.456527 | 3.3:+48575596 | None:intergenic |
GTGTTTATTACCATCATTGG+TGG | 0.456912 | 3.3:+48583234 | None:intergenic |
TAAGGATATGGTTATACAAA+AGG | 0.457662 | 3.3:-48575505 | MS.gene070316:CDS |
TTCCATGGGGTAGATGGTTG+TGG | 0.459263 | 3.3:-48576783 | MS.gene070316:CDS |
ACTCCATAATTTCTTTCTCA+TGG | 0.463582 | 3.3:+48575372 | None:intergenic |
GTCATACAAATTAAAGGTGA+AGG | 0.463615 | 3.3:+48575082 | None:intergenic |
TTAGAGTTTGTGTTAATTGG+AGG | 0.463888 | 3.3:-48575554 | MS.gene070316:CDS |
AGAAATAGAGCCACCAATGA+TGG | 0.472324 | 3.3:-48583244 | MS.gene070316:CDS |
GAGGGACATTTAAAGGTTGG+TGG | 0.472616 | 3.3:-48575535 | MS.gene070316:CDS |
AGCTGGAGCTATGAATTCAT+TGG | 0.478202 | 3.3:-48577478 | MS.gene070316:intron |
AGAAGCACGTTTAAAGCATA+GGG | 0.480079 | 3.3:-48577779 | MS.gene070316:CDS |
ACTGCACAAAAGCAATTTCA+TGG | 0.481373 | 3.3:+48577101 | None:intergenic |
AAACAATTCAGAATCTATAA+GGG | 0.482192 | 3.3:-48577158 | MS.gene070316:CDS |
CTTTGTTTGAAACAAAGAAA+GGG | 0.482401 | 3.3:-48584005 | MS.gene070316:CDS |
GATGCCTTTAAGAAGATAAA+GGG | 0.487324 | 3.3:+48575975 | None:intergenic |
AGTACTTGAAGCAAAGAAGT+TGG | 0.493694 | 3.3:+48576168 | None:intergenic |
CCTTTCTTTGTTTCAAACAA+AGG | 0.496299 | 3.3:+48584006 | None:intergenic |
GATTGCAAGTTATATTATGT+GGG | 0.501301 | 3.3:-48575223 | MS.gene070316:CDS |
TGGTGTCACTGAATGCATAT+AGG | 0.502489 | 3.3:+48575471 | None:intergenic |
GGACCTTTGTACATAGGAAC+TGG | 0.505295 | 3.3:-48576759 | MS.gene070316:CDS |
TGGTTTCATGTTGCCAACTT+TGG | 0.506683 | 3.3:-48577547 | MS.gene070316:CDS |
CGAGCTAAATACACCAAAGT+TGG | 0.507201 | 3.3:+48577534 | None:intergenic |
TGAGCATATGTTGCCAGAAG+TGG | 0.510897 | 3.3:-48583292 | MS.gene070316:CDS |
TGTGTGAAGGTGGAGTTCCA+TGG | 0.511018 | 3.3:-48576798 | MS.gene070316:intron |
ACACCCAAGAAAGCCTTCCT+TGG | 0.511244 | 3.3:+48576195 | None:intergenic |
TTTGAAACAAAGAAAGGGAA+AGG | 0.515212 | 3.3:-48584000 | MS.gene070316:CDS |
TGTATTTAGCTCGTGAAAAG+AGG | 0.520067 | 3.3:-48577524 | MS.gene070316:CDS |
TTGTAGTTGTGGTGATATTG+AGG | 0.521688 | 3.3:+48577501 | None:intergenic |
AAAATATGCAGCAGGTGACC+TGG | 0.526110 | 3.3:+48583056 | None:intergenic |
AAGAAGCACGTTTAAAGCAT+AGG | 0.526956 | 3.3:-48577780 | MS.gene070316:CDS |
TGCTTTAAACGTGCTTCTTG+AGG | 0.527337 | 3.3:+48577784 | None:intergenic |
TCTCTTTACAATCACAGCTA+AGG | 0.530305 | 3.3:-48575420 | MS.gene070316:CDS |
AAACAAAGAAAGGGAAAGGA+AGG | 0.531139 | 3.3:-48583996 | MS.gene070316:CDS |
AAGGTTGGTGGAATGACCTA+AGG | 0.531184 | 3.3:-48575523 | MS.gene070316:CDS |
GTAGAGCCAGATGAAGCATA+TGG | 0.534110 | 3.3:+48583936 | None:intergenic |
TATCACCACAACTACAAAGC+TGG | 0.534917 | 3.3:-48577495 | MS.gene070316:CDS |
ATTAATTTGAGCCTCCAAAT+GGG | 0.535780 | 3.3:-48576063 | MS.gene070316:CDS |
ACTCAACAAGAAGAAGAAGA+TGG | 0.540307 | 3.3:-48583883 | MS.gene070316:CDS |
CACTAATATTGCTAATGAGT+TGG | 0.541619 | 3.3:-48583019 | MS.gene070316:intron |
TAGAGTTTGTGTTAATTGGA+GGG | 0.545650 | 3.3:-48575553 | MS.gene070316:CDS |
CCTGTTATCACATCCTCCAC+TGG | 0.549438 | 3.3:+48576264 | None:intergenic |
GTACATCTTTAGAGTTATCA+GGG | 0.549753 | 3.3:+48577571 | None:intergenic |
TTTGTTACCTTTGGAAACAA+GGG | 0.550173 | 3.3:+48575952 | None:intergenic |
AAATACACAATGGGGAAATG+AGG | 0.556874 | 3.3:-48576586 | MS.gene070316:intron |
TACACACTCAACTTCTCAGA+TGG | 0.558181 | 3.3:+48583183 | None:intergenic |
ATGGTATTAAAATATGCAGC+AGG | 0.561767 | 3.3:+48583048 | None:intergenic |
AGGCATCCCCTTGTTTCCAA+AGG | 0.562566 | 3.3:-48575959 | MS.gene070316:intron |
GTGTGAAGGTGGAGTTCCAT+GGG | 0.562800 | 3.3:-48576797 | MS.gene070316:intron |
TTACTTGAAGAATTGTGTCA+TGG | 0.567310 | 3.3:+48577719 | None:intergenic |
AAGCACAATATCCCATTTGG+AGG | 0.569069 | 3.3:+48576052 | None:intergenic |
TGCCATGAAATCAACAACAT+TGG | 0.572501 | 3.3:-48575123 | MS.gene070316:CDS |
CATGGGGTAGATGGTTGTGG+TGG | 0.574601 | 3.3:-48576780 | MS.gene070316:CDS |
TATAGTTTGTGGTTATGATG+TGG | 0.575609 | 3.3:+48583905 | None:intergenic |
ATTAATTTGCCTCTATACCA+AGG | 0.577972 | 3.3:-48575188 | MS.gene070316:CDS |
GTTGAAGAATGCAATCTTGA+GGG | 0.581020 | 3.3:-48575276 | MS.gene070316:CDS |
TTCCCAAAAGCATACCATGC+AGG | 0.581978 | 3.3:+48576087 | None:intergenic |
CATATGAAGAAAATACACAA+TGG | 0.582803 | 3.3:-48576596 | MS.gene070316:CDS |
AGTGTGTATCTATCTGATGA+TGG | 0.584553 | 3.3:-48583168 | MS.gene070316:intron |
AGAGGTTTAAAGTTGAGCCC+AGG | 0.586421 | 3.3:-48583074 | MS.gene070316:CDS |
AATGCAATCTTGAGGGATGG+TGG | 0.586844 | 3.3:-48575269 | MS.gene070316:CDS |
TTTCTAAGTATAGTCCTGCA+TGG | 0.591712 | 3.3:-48576101 | MS.gene070316:CDS |
TGTGGTGGACCTTTGTACAT+AGG | 0.594236 | 3.3:-48576765 | MS.gene070316:CDS |
AAATATGCAGCAGGTGACCT+GGG | 0.598065 | 3.3:+48583057 | None:intergenic |
AGTGGACATATTTGTATGCA+CGG | 0.599242 | 3.3:-48583274 | MS.gene070316:CDS |
TTGTTACCTTTGGAAACAAG+GGG | 0.603198 | 3.3:+48575953 | None:intergenic |
TGTTGCTAATAGAGTGAACA+TGG | 0.606057 | 3.3:+48575334 | None:intergenic |
CAACATAAGAGATGGTCTGA+AGG | 0.609206 | 3.3:-48576141 | MS.gene070316:CDS |
GTACTACAATCCACCAAGGA+AGG | 0.618317 | 3.3:-48576208 | MS.gene070316:CDS |
CTTTAAGAAGATAAAGGGAA+GGG | 0.618362 | 3.3:+48575980 | None:intergenic |
TACTTGTTCAACATAAGAGA+TGG | 0.619858 | 3.3:-48576149 | MS.gene070316:CDS |
CACCACAACCATCTACCCCA+TGG | 0.626190 | 3.3:+48576781 | None:intergenic |
CCTTTAAGAAGATAAAGGGA+AGG | 0.632004 | 3.3:+48575979 | None:intergenic |
TGTTGAAGAATGCAATCTTG+AGG | 0.638885 | 3.3:-48575277 | MS.gene070316:CDS |
GCATATGGCTGCAAATAATG+AGG | 0.646183 | 3.3:+48583951 | None:intergenic |
CATCCAGTTCCTATGTACAA+AGG | 0.647537 | 3.3:+48576756 | None:intergenic |
GTGTCTTCGATTATCAGCAA+CGG | 0.648720 | 3.3:-48577217 | MS.gene070316:CDS |
GATAACTCTAAAGATGTACA+TGG | 0.650554 | 3.3:-48577567 | MS.gene070316:CDS |
TAATAGAGTGAACATGGGTG+AGG | 0.658467 | 3.3:+48575340 | None:intergenic |
CAGTGGAGGATGTGATAACA+GGG | 0.659812 | 3.3:-48576263 | MS.gene070316:CDS |
CAACAAGAAGAAGAAGATGG+AGG | 0.662949 | 3.3:-48583880 | MS.gene070316:CDS |
CGCTCTACTAGCAATTTCCG+AGG | 0.667271 | 3.3:-48577032 | MS.gene070316:intron |
AAGAATGCAATCTTGAGGGA+TGG | 0.667626 | 3.3:-48575272 | MS.gene070316:CDS |
TATGAAGAAAATACACAATG+GGG | 0.672143 | 3.3:-48576594 | MS.gene070316:CDS |
TATGCAAAAGGTATGAACCA+AGG | 0.691538 | 3.3:+48575608 | None:intergenic |
GAAGCACGTTTAAAGCATAG+GGG | 0.696063 | 3.3:-48577778 | MS.gene070316:CDS |
CAGTGTACTACAATCCACCA+AGG | 0.717709 | 3.3:-48576212 | MS.gene070316:CDS |
GAAATATGGATGTCCAGTGG+AGG | 0.719435 | 3.3:-48576277 | MS.gene070316:CDS |
TTTGAAATATGGATGTCCAG+TGG | 0.720869 | 3.3:-48576280 | MS.gene070316:CDS |
TGTGAAGGTGGAGTTCCATG+GGG | 0.755270 | 3.3:-48576796 | MS.gene070316:intron |
GTTGCTAATAGAGTGAACAT+GGG | 0.767287 | 3.3:+48575335 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 48575064 | 48584061 | 48575064 | ID=MS.gene070316 |
chr3.3 | mRNA | 48575064 | 48584061 | 48575064 | ID=MS.gene070316.t1;Parent=MS.gene070316 |
chr3.3 | exon | 48583873 | 48584061 | 48583873 | ID=MS.gene070316.t1.exon1;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48583873 | 48584061 | 48583873 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48583169 | 48583349 | 48583169 | ID=MS.gene070316.t1.exon2;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48583169 | 48583349 | 48583169 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48583020 | 48583135 | 48583020 | ID=MS.gene070316.t1.exon3;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48583020 | 48583135 | 48583020 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48577723 | 48577863 | 48577723 | ID=MS.gene070316.t1.exon4;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48577723 | 48577863 | 48577723 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48577479 | 48577613 | 48577479 | ID=MS.gene070316.t1.exon5;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48577479 | 48577613 | 48577479 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48577033 | 48577245 | 48577033 | ID=MS.gene070316.t1.exon6;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48577033 | 48577245 | 48577033 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48576587 | 48576811 | 48576587 | ID=MS.gene070316.t1.exon7;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48576587 | 48576811 | 48576587 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48575960 | 48576307 | 48575960 | ID=MS.gene070316.t1.exon8;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48575960 | 48576307 | 48575960 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
chr3.3 | exon | 48575064 | 48575639 | 48575064 | ID=MS.gene070316.t1.exon9;Parent=MS.gene070316.t1 |
chr3.3 | CDS | 48575064 | 48575639 | 48575064 | ID=cds.MS.gene070316.t1;Parent=MS.gene070316.t1 |
Gene Sequence |
Protein sequence |