Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070328.t1 | XP_024636348.1 | 69.5 | 774 | 39 | 2 | 1 | 577 | 1 | 774 | 2.30E-287 | 997.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070328.t1 | Q9SZL8 | 25.9 | 572 | 284 | 9 | 20 | 455 | 76 | 643 | 1.2e-45 | 186.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070328.t1 | A0A396GJD5 | 58.7 | 629 | 130 | 1 | 1 | 499 | 1 | 629 | 4.2e-198 | 700.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene070328.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051265 | MS.gene070328 | 0.80404 | 2.61E-49 | -1.69E-46 |
MS.gene05417 | MS.gene070328 | 0.802139 | 6.46E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070328.t1 | MTR_6g051425 | 74.678 | 233 | 55 | 1 | 1 | 229 | 1 | 233 | 1.13e-126 | 375 |
MS.gene070328.t1 | MTR_2g039370 | 83.784 | 74 | 12 | 0 | 49 | 122 | 98 | 171 | 6.61e-36 | 136 |
MS.gene070328.t1 | MTR_3g465760 | 73.913 | 69 | 14 | 1 | 41 | 105 | 2 | 70 | 1.99e-27 | 105 |
MS.gene070328.t1 | MTR_4g035820 | 26.349 | 315 | 210 | 10 | 18 | 319 | 76 | 381 | 5.50e-22 | 100 |
MS.gene070328.t1 | MTR_1g083640 | 27.586 | 232 | 145 | 6 | 22 | 232 | 56 | 285 | 8.40e-22 | 96.3 |
MS.gene070328.t1 | MTR_0558s0020 | 28.251 | 223 | 137 | 6 | 28 | 229 | 47 | 267 | 1.65e-21 | 95.5 |
MS.gene070328.t1 | MTR_1g013060 | 27.536 | 207 | 140 | 4 | 19 | 218 | 26 | 229 | 4.57e-20 | 89.7 |
MS.gene070328.t1 | MTR_1g070355 | 27.404 | 208 | 141 | 6 | 27 | 229 | 84 | 286 | 1.83e-17 | 86.3 |
MS.gene070328.t1 | MTR_8g446020 | 27.660 | 188 | 120 | 4 | 56 | 229 | 42 | 227 | 3.36e-17 | 82.0 |
MS.gene070328.t1 | MTR_6g090505 | 23.453 | 307 | 169 | 6 | 64 | 325 | 21 | 306 | 5.04e-16 | 80.5 |
MS.gene070328.t1 | MTR_7g446520 | 27.273 | 231 | 142 | 4 | 2 | 229 | 77 | 284 | 7.08e-16 | 79.7 |
MS.gene070328.t1 | MTR_0337s0040 | 29.167 | 144 | 101 | 1 | 83 | 225 | 81 | 224 | 7.73e-16 | 77.4 |
MS.gene070328.t1 | MTR_0402s0040 | 29.167 | 168 | 109 | 5 | 29 | 191 | 38 | 200 | 7.67e-15 | 77.8 |
MS.gene070328.t1 | MTR_2g014100 | 27.957 | 186 | 111 | 6 | 28 | 192 | 55 | 238 | 9.65e-14 | 71.6 |
MS.gene070328.t1 | MTR_7g446480 | 30.147 | 136 | 95 | 0 | 101 | 236 | 149 | 284 | 1.70e-13 | 72.0 |
MS.gene070328.t1 | MTR_7g446510 | 28.824 | 170 | 120 | 1 | 67 | 236 | 131 | 299 | 1.95e-13 | 72.0 |
MS.gene070328.t1 | MTR_2g098880 | 32.727 | 110 | 64 | 3 | 18 | 121 | 62 | 167 | 4.59e-13 | 69.7 |
MS.gene070328.t1 | MTR_2g098880 | 32.727 | 110 | 64 | 3 | 18 | 121 | 74 | 179 | 5.95e-13 | 69.7 |
MS.gene070328.t1 | MTR_5g076070 | 25.604 | 207 | 142 | 5 | 29 | 229 | 65 | 265 | 7.98e-13 | 69.7 |
MS.gene070328.t1 | MTR_2g098920 | 29.907 | 107 | 74 | 1 | 18 | 124 | 81 | 186 | 6.93e-12 | 66.6 |
MS.gene070328.t1 | MTR_5g039760 | 25.758 | 198 | 113 | 5 | 19 | 211 | 12 | 180 | 7.25e-12 | 65.1 |
MS.gene070328.t1 | MTR_3g450850 | 24.583 | 240 | 166 | 7 | 17 | 244 | 47 | 283 | 1.20e-11 | 67.0 |
MS.gene070328.t1 | MTR_1g008290 | 26.316 | 114 | 83 | 1 | 101 | 214 | 32 | 144 | 8.96e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070328.t1 | AT4G38180 | 30.973 | 226 | 153 | 3 | 231 | 455 | 420 | 643 | 1.45e-29 | 124 |
MS.gene070328.t1 | AT4G38180 | 35.681 | 213 | 131 | 4 | 20 | 228 | 76 | 286 | 6.06e-29 | 122 |
MS.gene070328.t1 | AT2G27110 | 31.602 | 231 | 152 | 4 | 234 | 462 | 225 | 451 | 4.85e-29 | 122 |
MS.gene070328.t1 | AT2G27110 | 31.169 | 231 | 153 | 4 | 234 | 462 | 370 | 596 | 5.94e-29 | 122 |
MS.gene070328.t1 | AT2G27110 | 26.389 | 216 | 132 | 5 | 13 | 228 | 45 | 233 | 6.37e-14 | 75.5 |
MS.gene070328.t1 | AT2G27110 | 31.169 | 231 | 153 | 4 | 234 | 462 | 370 | 596 | 5.94e-29 | 122 |
MS.gene070328.t1 | AT2G27110 | 26.389 | 216 | 132 | 5 | 13 | 228 | 45 | 233 | 6.37e-14 | 75.5 |
MS.gene070328.t1 | AT1G76320 | 31.481 | 216 | 143 | 2 | 232 | 447 | 334 | 544 | 1.88e-26 | 114 |
MS.gene070328.t1 | AT1G76320 | 28.293 | 205 | 134 | 5 | 27 | 229 | 7 | 200 | 4.31e-15 | 79.0 |
MS.gene070328.t1 | AT1G76320 | 31.481 | 216 | 143 | 2 | 232 | 447 | 334 | 544 | 1.99e-26 | 114 |
MS.gene070328.t1 | AT1G76320 | 28.293 | 205 | 134 | 5 | 27 | 229 | 7 | 200 | 4.71e-15 | 79.0 |
MS.gene070328.t1 | AT1G76320 | 31.481 | 216 | 143 | 2 | 232 | 447 | 334 | 544 | 2.00e-26 | 114 |
MS.gene070328.t1 | AT1G76320 | 28.293 | 205 | 134 | 5 | 27 | 229 | 7 | 200 | 4.63e-15 | 79.0 |
MS.gene070328.t1 | AT1G76320 | 31.481 | 216 | 143 | 2 | 232 | 447 | 334 | 544 | 2.00e-26 | 114 |
MS.gene070328.t1 | AT1G76320 | 28.293 | 205 | 134 | 5 | 27 | 229 | 7 | 200 | 4.63e-15 | 79.0 |
MS.gene070328.t1 | AT4G19990 | 32.727 | 220 | 144 | 4 | 230 | 448 | 344 | 560 | 5.52e-26 | 113 |
MS.gene070328.t1 | AT4G19990 | 32.727 | 220 | 144 | 4 | 230 | 448 | 344 | 560 | 5.52e-26 | 113 |
MS.gene070328.t1 | AT4G19990 | 32.727 | 220 | 144 | 4 | 230 | 448 | 287 | 503 | 5.71e-26 | 113 |
MS.gene070328.t1 | AT4G19990 | 32.727 | 220 | 144 | 4 | 230 | 448 | 358 | 574 | 6.45e-26 | 113 |
MS.gene070328.t1 | AT4G19990 | 32.727 | 220 | 144 | 4 | 230 | 448 | 344 | 560 | 7.13e-26 | 113 |
MS.gene070328.t1 | AT4G19990 | 32.727 | 220 | 144 | 4 | 230 | 448 | 344 | 560 | 8.68e-26 | 112 |
MS.gene070328.t1 | AT4G19990 | 32.727 | 220 | 144 | 4 | 230 | 448 | 344 | 560 | 8.68e-26 | 112 |
MS.gene070328.t1 | AT4G38170 | 22.078 | 308 | 218 | 6 | 231 | 527 | 185 | 481 | 3.89e-25 | 110 |
MS.gene070328.t1 | AT4G15090 | 30.137 | 219 | 150 | 2 | 232 | 450 | 397 | 612 | 1.14e-24 | 109 |
MS.gene070328.t1 | AT4G15090 | 27.442 | 215 | 138 | 5 | 24 | 229 | 58 | 263 | 1.28e-17 | 87.4 |
MS.gene070328.t1 | AT4G15090 | 30.137 | 219 | 150 | 2 | 232 | 450 | 397 | 612 | 1.14e-24 | 109 |
MS.gene070328.t1 | AT4G15090 | 27.442 | 215 | 138 | 5 | 24 | 229 | 58 | 263 | 1.28e-17 | 87.4 |
MS.gene070328.t1 | AT4G15090 | 30.137 | 219 | 150 | 2 | 232 | 450 | 397 | 612 | 1.14e-24 | 109 |
MS.gene070328.t1 | AT4G15090 | 27.442 | 215 | 138 | 5 | 24 | 229 | 58 | 263 | 1.28e-17 | 87.4 |
MS.gene070328.t1 | AT4G15090 | 30.137 | 219 | 150 | 2 | 232 | 450 | 397 | 612 | 1.14e-24 | 109 |
MS.gene070328.t1 | AT4G15090 | 27.442 | 215 | 138 | 5 | 24 | 229 | 58 | 263 | 1.28e-17 | 87.4 |
MS.gene070328.t1 | AT4G15090 | 30.137 | 219 | 150 | 2 | 232 | 450 | 397 | 612 | 1.14e-24 | 109 |
MS.gene070328.t1 | AT4G15090 | 27.442 | 215 | 138 | 5 | 24 | 229 | 58 | 263 | 1.28e-17 | 87.4 |
MS.gene070328.t1 | AT3G22170 | 30.275 | 218 | 145 | 4 | 233 | 448 | 407 | 619 | 6.54e-23 | 103 |
MS.gene070328.t1 | AT3G22170 | 30.275 | 218 | 145 | 4 | 233 | 448 | 407 | 619 | 6.54e-23 | 103 |
MS.gene070328.t1 | AT3G06250 | 30.631 | 222 | 129 | 5 | 235 | 446 | 497 | 703 | 2.57e-21 | 99.0 |
MS.gene070328.t1 | AT3G06250 | 27.014 | 211 | 115 | 4 | 18 | 228 | 191 | 362 | 3.87e-14 | 76.3 |
MS.gene070328.t1 | AT3G06250 | 30.631 | 222 | 129 | 5 | 235 | 446 | 497 | 703 | 2.57e-21 | 99.0 |
MS.gene070328.t1 | AT3G06250 | 27.014 | 211 | 115 | 4 | 18 | 228 | 191 | 362 | 3.87e-14 | 76.3 |
MS.gene070328.t1 | AT3G06250 | 30.631 | 222 | 129 | 5 | 235 | 446 | 497 | 703 | 2.57e-21 | 99.0 |
MS.gene070328.t1 | AT3G06250 | 27.014 | 211 | 115 | 4 | 18 | 228 | 191 | 362 | 3.87e-14 | 76.3 |
MS.gene070328.t1 | AT5G18960 | 30.180 | 222 | 130 | 4 | 235 | 446 | 521 | 727 | 3.63e-21 | 98.6 |
MS.gene070328.t1 | AT5G18960 | 30.180 | 222 | 130 | 4 | 235 | 446 | 521 | 727 | 3.63e-21 | 98.6 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 300 | 511 | 2.49e-19 | 92.8 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 300 | 511 | 2.73e-19 | 92.4 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 341 | 552 | 2.96e-19 | 92.4 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 341 | 552 | 2.96e-19 | 92.4 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 341 | 552 | 2.96e-19 | 92.4 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 341 | 552 | 3.06e-19 | 92.4 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 341 | 552 | 3.06e-19 | 92.4 |
MS.gene070328.t1 | AT2G32250 | 25.581 | 215 | 157 | 2 | 232 | 446 | 341 | 552 | 3.48e-19 | 92.0 |
MS.gene070328.t1 | AT1G10240 | 28.879 | 232 | 154 | 6 | 231 | 461 | 398 | 619 | 4.12e-17 | 85.5 |
MS.gene070328.t1 | AT1G10240 | 28.837 | 215 | 146 | 4 | 18 | 226 | 49 | 262 | 1.47e-15 | 80.5 |
MS.gene070328.t1 | AT1G10240 | 28.879 | 232 | 154 | 6 | 231 | 461 | 398 | 619 | 4.12e-17 | 85.5 |
MS.gene070328.t1 | AT1G10240 | 28.837 | 215 | 146 | 4 | 18 | 226 | 49 | 262 | 1.47e-15 | 80.5 |
MS.gene070328.t1 | AT1G52520 | 25.188 | 266 | 163 | 7 | 235 | 481 | 420 | 668 | 1.93e-16 | 83.2 |
MS.gene070328.t1 | AT1G52520 | 27.830 | 212 | 139 | 4 | 19 | 229 | 87 | 285 | 1.34e-13 | 74.3 |
MS.gene070328.t1 | AT5G28530 | 26.432 | 227 | 150 | 4 | 18 | 229 | 56 | 280 | 5.77e-14 | 75.5 |
MS.gene070328.t1 | AT5G28530 | 22.222 | 234 | 170 | 3 | 234 | 467 | 416 | 637 | 1.67e-13 | 73.9 |
MS.gene070328.t1 | AT5G28530 | 26.432 | 227 | 150 | 4 | 18 | 229 | 56 | 280 | 5.77e-14 | 75.5 |
MS.gene070328.t1 | AT5G28530 | 22.222 | 234 | 170 | 3 | 234 | 467 | 416 | 637 | 1.67e-13 | 73.9 |
MS.gene070328.t1 | AT5G28530 | 26.432 | 227 | 150 | 4 | 18 | 229 | 56 | 280 | 6.26e-14 | 75.5 |
MS.gene070328.t1 | AT5G28530 | 22.594 | 239 | 167 | 4 | 234 | 467 | 416 | 641 | 1.39e-12 | 71.2 |
MS.gene070328.t1 | AT5G28530 | 22.222 | 234 | 170 | 3 | 234 | 467 | 353 | 574 | 2.11e-13 | 73.6 |
MS.gene070328.t1 | AT5G28530 | 29.282 | 181 | 119 | 4 | 18 | 192 | 56 | 233 | 1.62e-12 | 70.9 |
MS.gene070328.t1 | AT1G80010 | 24.898 | 245 | 140 | 6 | 229 | 449 | 439 | 663 | 6.34e-13 | 72.0 |
MS.gene070328.t1 | AT5G28530 | 29.282 | 181 | 119 | 4 | 18 | 192 | 56 | 233 | 1.56e-12 | 70.9 |
MS.gene070328.t1 | AT5G28530 | 22.594 | 239 | 167 | 4 | 234 | 467 | 353 | 578 | 1.81e-12 | 70.5 |
MS.gene070328.t1 | AT3G59470 | 33.010 | 103 | 68 | 1 | 18 | 120 | 71 | 172 | 2.96e-12 | 67.4 |
MS.gene070328.t1 | AT3G59470 | 33.010 | 103 | 68 | 1 | 18 | 120 | 71 | 172 | 2.96e-12 | 67.4 |
MS.gene070328.t1 | AT3G59470 | 33.010 | 103 | 68 | 1 | 18 | 120 | 83 | 184 | 3.64e-12 | 67.4 |
Find 95 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAATATTTGGAATTATTT+AGG | 0.090273 | 4.1:-5954166 | MS.gene070328:CDS |
TTGCAGGAATCTTGTAATTT+TGG | 0.216335 | 4.1:-5952030 | MS.gene070328:intron |
GTATACGAGTTACAAATATT+TGG | 0.221426 | 4.1:-5954177 | MS.gene070328:CDS |
TTGCGGATTTACAATATTAA+AGG | 0.235308 | 4.1:-5952966 | MS.gene070328:CDS |
CAAATATTTGGAATTATTTA+GGG | 0.245589 | 4.1:-5954165 | MS.gene070328:CDS |
CTCGTTTGACTAATGTCTTT+TGG | 0.253639 | 4.1:-5953964 | MS.gene070328:CDS |
TTGTCACAAGTTCGAATCTA+TGG | 0.257274 | 4.1:-5953009 | MS.gene070328:CDS |
ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | 4.1:+5954420 | None:intergenic |
TTTGGACTCATCCACTTCTA+TGG | 0.267599 | 4.1:-5953042 | MS.gene070328:CDS |
GTCTTTATACAATTTAGTTT+TGG | 0.305862 | 4.1:-5952781 | MS.gene070328:CDS |
ATGTTCGATGGTGATGATTC+CGG | 0.340660 | 4.1:-5952831 | MS.gene070328:CDS |
ATGTTAGCAAGGAAGGAGTT+TGG | 0.356508 | 4.1:-5954327 | MS.gene070328:CDS |
GAAGGATAAACATTAGTATA+AGG | 0.359805 | 4.1:+5952336 | None:intergenic |
ACCATCTTGTTAAGATGTAT+TGG | 0.361271 | 4.1:+5952925 | None:intergenic |
GGGTTTAAGAATAATGAATA+TGG | 0.371754 | 4.1:-5954412 | MS.gene070328:CDS |
TTCATTTGATGCATCTCAAC+AGG | 0.378264 | 4.1:-5952316 | MS.gene070328:intron |
AGGAGACCTCATAAAGTCTA+TGG | 0.381794 | 4.1:-5954209 | MS.gene070328:CDS |
CTACCTTGATAATTGCTACT+TGG | 0.385532 | 4.1:+5951997 | None:intergenic |
GCAACAACATCCTTCAAGTT+GGG | 0.389027 | 4.1:-5952211 | MS.gene070328:CDS |
AACAGTAAAACTCTTTAAAA+CGG | 0.389800 | 4.1:+5954443 | None:intergenic |
CAAGCACATGCCTTCAAAAC+AGG | 0.394361 | 4.1:-5954520 | MS.gene070328:CDS |
GAAAAGGTGGCGACAATTAG+AGG | 0.395021 | 4.1:-5953294 | MS.gene070328:CDS |
ATCACCATCGAACATTGAAT+TGG | 0.403095 | 4.1:+5952839 | None:intergenic |
ATGAATACATATCAACTTCA+TGG | 0.408565 | 4.1:-5953500 | MS.gene070328:CDS |
TTTAGTGGCATTTGAGAAGA+TGG | 0.409481 | 4.1:-5953318 | MS.gene070328:CDS |
TGAGAGTACAAATAGTGCTT+TGG | 0.413886 | 4.1:-5953378 | MS.gene070328:CDS |
TTCTTTGCAGTCATGCTTTG+CGG | 0.424200 | 4.1:-5952983 | MS.gene070328:CDS |
CAGGATTTAGTGTAAGAAAA+GGG | 0.432600 | 4.1:-5954501 | MS.gene070328:CDS |
ATCAACTTCATGGGCACAAA+TGG | 0.433294 | 4.1:-5953490 | MS.gene070328:CDS |
AAGTTGAAATTGATTGAAGC+TGG | 0.434164 | 4.1:-5954073 | MS.gene070328:CDS |
TGTCAATCAGTTGAAATTGA+TGG | 0.438803 | 4.1:-5954604 | MS.gene070328:CDS |
ACAGGATTTAGTGTAAGAAA+AGG | 0.440176 | 4.1:-5954502 | MS.gene070328:CDS |
AGGTTTAATGTTAGCAAGGA+AGG | 0.442161 | 4.1:-5954334 | MS.gene070328:CDS |
ATAAAGTCTATGGTGAATTC+TGG | 0.445432 | 4.1:-5954199 | MS.gene070328:CDS |
AGTGCTTTGGGAGATATTGC+AGG | 0.446775 | 4.1:-5953365 | MS.gene070328:CDS |
GAGAGTACAAATAGTGCTTT+GGG | 0.447442 | 4.1:-5953377 | MS.gene070328:CDS |
GACATTTGACATATTTCTCA+TGG | 0.451386 | 4.1:+5954234 | None:intergenic |
ACAGTAAAACTCTTTAAAAC+GGG | 0.452807 | 4.1:+5954444 | None:intergenic |
AATTCACCATAGACTTTATG+AGG | 0.457499 | 4.1:+5954203 | None:intergenic |
GCATTTAAACCCCAACTTGA+AGG | 0.462159 | 4.1:+5952201 | None:intergenic |
AGTTGAAATTGATTGAAGCT+GGG | 0.466350 | 4.1:-5954072 | MS.gene070328:CDS |
TGTATGCAATTCGCAGCAAA+TGG | 0.471481 | 4.1:-5953457 | MS.gene070328:CDS |
AACTCTACGACATGCATCCT+TGG | 0.475875 | 4.1:-5953213 | MS.gene070328:CDS |
TCATTTAGTAACTTGCTACA+TGG | 0.476165 | 4.1:-5952168 | MS.gene070328:CDS |
CTCGTTCAATTATTTCAGCC+AGG | 0.476302 | 4.1:-5952139 | MS.gene070328:intron |
GTCGGTGGATATAACAATCT+TGG | 0.477476 | 4.1:-5954136 | MS.gene070328:CDS |
CTTATGAAAGAGCTGATTCA+AGG | 0.480001 | 4.1:-5954378 | MS.gene070328:CDS |
CCTTGATAATTGCTACTTGG+AGG | 0.481492 | 4.1:+5952000 | None:intergenic |
CGCAACAAATGTCTTTGCTC+AGG | 0.482031 | 4.1:+5954259 | None:intergenic |
CTTGTTAAGATGTATTGGTC+AGG | 0.483267 | 4.1:+5952930 | None:intergenic |
TTGGAATTATTTAGGGGAAG+AGG | 0.485109 | 4.1:-5954158 | MS.gene070328:CDS |
GGAAGCACTTCCGTGGAGAT+TGG | 0.486127 | 4.1:-5953134 | MS.gene070328:CDS |
TTACAGTGTGCAGCTAGATC+AGG | 0.487131 | 4.1:-5953990 | MS.gene070328:CDS |
AATGAGTATCTTAATGGGGC+AGG | 0.495180 | 4.1:-5953158 | MS.gene070328:CDS |
AGCAACAACATCCTTCAAGT+TGG | 0.497300 | 4.1:-5952212 | MS.gene070328:CDS |
AAGAAGAATTTCAAACCACT+TGG | 0.525111 | 4.1:-5953532 | MS.gene070328:CDS |
AAGGACAAATTGCAAAGCTA+TGG | 0.528165 | 4.1:-5954359 | MS.gene070328:CDS |
TGTTGAGATGCATCAAATGA+AGG | 0.531567 | 4.1:+5952318 | None:intergenic |
CAACAACATCCTTCAAGTTG+GGG | 0.535019 | 4.1:-5952210 | MS.gene070328:CDS |
ACCATCGAACATTGAATTGG+AGG | 0.542708 | 4.1:+5952842 | None:intergenic |
AGAAATATGTCAAATGTCAA+AGG | 0.545496 | 4.1:-5954229 | MS.gene070328:CDS |
ACCAATACATCTTAACAAGA+TGG | 0.554914 | 4.1:-5952926 | MS.gene070328:CDS |
ATTTAGTGTAAGAAAAGGGA+GGG | 0.556280 | 4.1:-5954497 | MS.gene070328:CDS |
ACCTCCAATTCAATGTTCGA+TGG | 0.558552 | 4.1:-5952843 | MS.gene070328:CDS |
CCTCCAAGTAGCAATTATCA+AGG | 0.558670 | 4.1:-5952000 | MS.gene070328:CDS |
GATTTAGTGTAAGAAAAGGG+AGG | 0.567737 | 4.1:-5954498 | MS.gene070328:CDS |
AGCGTTGCGGTAAAGAAGAC+CGG | 0.568368 | 4.1:+5952812 | None:intergenic |
TGTCACAAGTTCGAATCTAT+GGG | 0.570742 | 4.1:-5953008 | MS.gene070328:CDS |
TAATGAATATGGAGGTGAAG+TGG | 0.572461 | 4.1:-5954401 | MS.gene070328:CDS |
GAGTATCTTAATGGGGCAGG+TGG | 0.572748 | 4.1:-5953155 | MS.gene070328:CDS |
TGAATACATATCAACTTCAT+GGG | 0.574425 | 4.1:-5953499 | MS.gene070328:CDS |
GGTGAGGTTTAATGTTAGCA+AGG | 0.579640 | 4.1:-5954338 | MS.gene070328:CDS |
ACTGCAGCTAACCATAGAAG+TGG | 0.582272 | 4.1:+5953031 | None:intergenic |
CTGGTATCAAATCTTCTCAA+AGG | 0.583873 | 4.1:-5953403 | MS.gene070328:CDS |
TATTTAGGGGAAGAGGTCGG+TGG | 0.586341 | 4.1:-5954151 | MS.gene070328:CDS |
GGCAGGTGGAAGCACTTCCG+TGG | 0.590405 | 4.1:-5953141 | MS.gene070328:CDS |
AATTATTTAGGGGAAGAGGT+CGG | 0.592715 | 4.1:-5954154 | MS.gene070328:CDS |
GTTGAAATTGATTGAAGCTG+GGG | 0.593382 | 4.1:-5954071 | MS.gene070328:CDS |
AGAAGAATTTCAAACCACTT+GGG | 0.599091 | 4.1:-5953531 | MS.gene070328:CDS |
CATTTGAGAAGATGGTGAAA+AGG | 0.603784 | 4.1:-5953310 | MS.gene070328:CDS |
TTTAAGAATAATGAATATGG+AGG | 0.604513 | 4.1:-5954409 | MS.gene070328:CDS |
CTGAGCAAAGACATTTGTTG+CGG | 0.611498 | 4.1:-5954258 | MS.gene070328:CDS |
TTGAGAAGATGGTGAAAAGG+TGG | 0.621585 | 4.1:-5953307 | MS.gene070328:CDS |
TAATTCTTAAGTGGGTGGAG+TGG | 0.623410 | 4.1:-5952385 | MS.gene070328:intron |
AATTCGCAGCAAATGGAGCA+CGG | 0.624767 | 4.1:-5953450 | MS.gene070328:CDS |
CAAATTGCAAAGCTATGGTG+AGG | 0.629755 | 4.1:-5954354 | MS.gene070328:CDS |
TTTAAATGAGTATCTTAATG+GGG | 0.632939 | 4.1:-5953162 | MS.gene070328:CDS |
AAATATTTGGAATTATTTAG+GGG | 0.632966 | 4.1:-5954164 | MS.gene070328:CDS |
TCACTACTGTTTATAACACG+AGG | 0.639447 | 4.1:+5953236 | None:intergenic |
AACAAATGTCTTTGCTCAGG+AGG | 0.641459 | 4.1:+5954262 | None:intergenic |
TGCACACTGTAATAGAACAT+AGG | 0.647292 | 4.1:+5954001 | None:intergenic |
ATTCATCATCTCATCCCAAG+TGG | 0.657667 | 4.1:+5953517 | None:intergenic |
ATCACATCGACCAATCTCCA+CGG | 0.672242 | 4.1:+5953124 | None:intergenic |
CTACTGTTTATAACACGAGG+AGG | 0.687262 | 4.1:+5953239 | None:intergenic |
AAGACTTCAGAATAGCGTTG+CGG | 0.703840 | 4.1:+5952799 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACAAAAGAAAAAAAAATAA+AGG | - | chr4.1:5954091-5954110 | MS.gene070328:CDS | 10.0% |
!! | TAAATTATAATCAAAATACC+TGG | + | chr4.1:5954491-5954510 | None:intergenic | 15.0% |
!! | TTATTTAATAAATGCATGAT+AGG | - | chr4.1:5953043-5953062 | MS.gene070328:CDS | 15.0% |
!!! | AAACTTCAATTTCTTTTAAT+TGG | - | chr4.1:5952828-5952847 | MS.gene070328:CDS | 15.0% |
!!! | AAATATTTGGAATTATTTAG+GGG | - | chr4.1:5952445-5952464 | MS.gene070328:intron | 15.0% |
!!! | ACAAATATTTGGAATTATTT+AGG | - | chr4.1:5952443-5952462 | MS.gene070328:intron | 15.0% |
!!! | CAAATATTTGGAATTATTTA+GGG | - | chr4.1:5952444-5952463 | MS.gene070328:intron | 15.0% |
!!! | TTTTAAATGAGTATCTTAAT+GGG | - | chr4.1:5953446-5953465 | MS.gene070328:CDS | 15.0% |
!!! | TTTTTAAATGAGTATCTTAA+TGG | - | chr4.1:5953445-5953464 | MS.gene070328:CDS | 15.0% |
!! | TTTAAATGAGTATCTTAATG+GGG | - | chr4.1:5953447-5953466 | MS.gene070328:CDS | 20.0% |
!! | TTTAAGAATAATGAATATGG+AGG | - | chr4.1:5952200-5952219 | MS.gene070328:CDS | 20.0% |
!!! | AACAGTAAAACTCTTTAAAA+CGG | + | chr4.1:5952169-5952188 | None:intergenic | 20.0% |
!!! | CTGAAGTATTGATATTTTAT+CGG | - | chr4.1:5954538-5954557 | MS.gene070328:CDS | 20.0% |
!!! | GTCTTTATACAATTTAGTTT+TGG | - | chr4.1:5953828-5953847 | MS.gene070328:intron | 20.0% |
!!! | TCACGATATACTTTTTATTT+GGG | + | chr4.1:5953546-5953565 | None:intergenic | 20.0% |
!!! | TGATCTGTAAATATTGTTTT+TGG | + | chr4.1:5952893-5952912 | None:intergenic | 20.0% |
! | ACAAATCATGTCATACTTAT+TGG | + | chr4.1:5952741-5952760 | None:intergenic | 25.0% |
! | AGAAATATGTCAAATGTCAA+AGG | - | chr4.1:5952380-5952399 | MS.gene070328:intron | 25.0% |
! | ATGAATACATATCAACTTCA+TGG | - | chr4.1:5953109-5953128 | MS.gene070328:CDS | 25.0% |
! | ATTATTCTTAAACCCTTCTT+TGG | + | chr4.1:5952192-5952211 | None:intergenic | 25.0% |
! | GAACAATTTATCACAAAATG+AGG | - | chr4.1:5953968-5953987 | MS.gene070328:CDS | 25.0% |
! | GAAGGATAAACATTAGTATA+AGG | + | chr4.1:5954276-5954295 | None:intergenic | 25.0% |
! | GGGTTTAAGAATAATGAATA+TGG | - | chr4.1:5952197-5952216 | MS.gene070328:CDS | 25.0% |
! | GTATACGAGTTACAAATATT+TGG | - | chr4.1:5952432-5952451 | MS.gene070328:intron | 25.0% |
! | TATGCAAGTAATTCTTAAGT+GGG | - | chr4.1:5954216-5954235 | MS.gene070328:CDS | 25.0% |
! | TGAATACATATCAACTTCAT+GGG | - | chr4.1:5953110-5953129 | MS.gene070328:CDS | 25.0% |
! | TTGCGGATTTACAATATTAA+AGG | - | chr4.1:5953643-5953662 | MS.gene070328:intron | 25.0% |
!! | AAAAAAGCACAAAAATCATG+TGG | - | chr4.1:5953865-5953884 | MS.gene070328:intron | 25.0% |
!! | AAAAAGCACAAAAATCATGT+GGG | - | chr4.1:5953866-5953885 | MS.gene070328:intron | 25.0% |
!! | AAAGTTGATTATGATTGCTT+TGG | - | chr4.1:5952683-5952702 | MS.gene070328:intron | 25.0% |
!! | AAGTTGATTATGATTGCTTT+GGG | - | chr4.1:5952684-5952703 | MS.gene070328:intron | 25.0% |
!! | TAAAAAGTATATCGTGACTT+TGG | - | chr4.1:5953549-5953568 | MS.gene070328:intron | 25.0% |
!! | TCATTGAATTTTATTGTTGC+AGG | - | chr4.1:5954563-5954582 | MS.gene070328:CDS | 25.0% |
!!! | AAAGCATTTTTAGAGAGTAT+GGG | - | chr4.1:5952857-5952876 | MS.gene070328:CDS | 25.0% |
!!! | ACAGTAAAACTCTTTAAAAC+GGG | + | chr4.1:5952168-5952187 | None:intergenic | 25.0% |
!!! | GTCACGATATACTTTTTATT+TGG | + | chr4.1:5953547-5953566 | None:intergenic | 25.0% |
!!! | TAAAGCATTTTTAGAGAGTA+TGG | - | chr4.1:5952856-5952875 | MS.gene070328:CDS | 25.0% |
AAAAAATGCTCCTTCACATT+TGG | - | chr4.1:5952988-5953007 | MS.gene070328:CDS | 30.0% | |
AAAAATGCTCCTTCACATTT+GGG | - | chr4.1:5952989-5953008 | MS.gene070328:CDS | 30.0% | |
AAGAAGAATTTCAAACCACT+TGG | - | chr4.1:5953077-5953096 | MS.gene070328:CDS | 30.0% | |
AAGTTGAAATTGATTGAAGC+TGG | - | chr4.1:5952536-5952555 | MS.gene070328:intron | 30.0% | |
AATTCACCATAGACTTTATG+AGG | + | chr4.1:5952409-5952428 | None:intergenic | 30.0% | |
ACAGGATTTAGTGTAAGAAA+AGG | - | chr4.1:5952107-5952126 | MS.gene070328:intron | 30.0% | |
ACCAATACATCTTAACAAGA+TGG | - | chr4.1:5953683-5953702 | MS.gene070328:intron | 30.0% | |
ACCATCTTGTTAAGATGTAT+TGG | + | chr4.1:5953687-5953706 | None:intergenic | 30.0% | |
AGAAGAATTTCAAACCACTT+GGG | - | chr4.1:5953078-5953097 | MS.gene070328:CDS | 30.0% | |
AGTTGAAATTGATTGAAGCT+GGG | - | chr4.1:5952537-5952556 | MS.gene070328:intron | 30.0% | |
AGTTGATTATGATTGCTTTG+GGG | - | chr4.1:5952685-5952704 | MS.gene070328:intron | 30.0% | |
ATAAAGTCTATGGTGAATTC+TGG | - | chr4.1:5952410-5952429 | MS.gene070328:intron | 30.0% | |
ATGATTTATCCCAACAAATG+GGG | + | chr4.1:5952765-5952784 | None:intergenic | 30.0% | |
ATTTAGTGTAAGAAAAGGGA+GGG | - | chr4.1:5952112-5952131 | MS.gene070328:intron | 30.0% | |
CAGGATTTAGTGTAAGAAAA+GGG | - | chr4.1:5952108-5952127 | MS.gene070328:intron | 30.0% | |
CTATGCAAGTAATTCTTAAG+TGG | - | chr4.1:5954215-5954234 | MS.gene070328:CDS | 30.0% | |
GACATTTGACATATTTCTCA+TGG | + | chr4.1:5952378-5952397 | None:intergenic | 30.0% | |
GATGATTTATCCCAACAAAT+GGG | + | chr4.1:5952766-5952785 | None:intergenic | 30.0% | |
TCTTCAGTTGAATTTAAGTC+AGG | + | chr4.1:5953939-5953958 | None:intergenic | 30.0% | |
TGATGATTTATCCCAACAAA+TGG | + | chr4.1:5952767-5952786 | None:intergenic | 30.0% | |
TGTCAATCAGTTGAAATTGA+TGG | - | chr4.1:5952005-5952024 | MS.gene070328:CDS | 30.0% | |
TTGTTGGGATAAATCATCAT+TGG | - | chr4.1:5952768-5952787 | MS.gene070328:CDS | 30.0% | |
! | AGTAATCATGTATTTTCTGC+TGG | - | chr4.1:5953187-5953206 | MS.gene070328:CDS | 30.0% |
! | AGTTTTACTGTTCCAAAGAA+GGG | - | chr4.1:5952177-5952196 | MS.gene070328:CDS | 30.0% |
! | GATTTTGTGAGTATATACCA+AGG | + | chr4.1:5953416-5953435 | None:intergenic | 30.0% |
! | GGATGCAAAGATATTTTTCT+TGG | - | chr4.1:5952026-5952045 | MS.gene070328:CDS | 30.0% |
! | TTGCAGGAATCTTGTAATTT+TGG | - | chr4.1:5954579-5954598 | MS.gene070328:CDS | 30.0% |
! | TTTTCTCAAAATGTCCTTTC+TGG | + | chr4.1:5954058-5954077 | None:intergenic | 30.0% |
!! | AGGAATCTTGTAATTTTGGT+CGG | - | chr4.1:5954583-5954602 | MS.gene070328:CDS | 30.0% |
!! | ATGTCTCTCACAATTTTTAG+TGG | - | chr4.1:5953276-5953295 | MS.gene070328:CDS | 30.0% |
!! | TACACTAAATCCTGTTTTGA+AGG | + | chr4.1:5952102-5952121 | None:intergenic | 30.0% |
!! | TCATTTAGTAACTTGCTACA+TGG | - | chr4.1:5954441-5954460 | MS.gene070328:CDS | 30.0% |
AAGGACAAATTGCAAAGCTA+TGG | - | chr4.1:5952250-5952269 | MS.gene070328:intron | 35.0% | |
AATTATTTAGGGGAAGAGGT+CGG | - | chr4.1:5952455-5952474 | MS.gene070328:intron | 35.0% | |
AGGTTTAATGTTAGCAAGGA+AGG | - | chr4.1:5952275-5952294 | MS.gene070328:intron | 35.0% | |
ATCACCATCGAACATTGAAT+TGG | + | chr4.1:5953773-5953792 | None:intergenic | 35.0% | |
ATGTGGGAATTGCTTGATAT+TGG | - | chr4.1:5953882-5953901 | MS.gene070328:intron | 35.0% | |
CAAGATGGTCAAAAAATGCA+AGG | - | chr4.1:5953698-5953717 | MS.gene070328:intron | 35.0% | |
CATTGGCAAAATGTCATGTT+TGG | - | chr4.1:5952785-5952804 | MS.gene070328:CDS | 35.0% | |
CATTTGAGAAGATGGTGAAA+AGG | - | chr4.1:5953299-5953318 | MS.gene070328:CDS | 35.0% | |
CTGGTATCAAATCTTCTCAA+AGG | - | chr4.1:5953206-5953225 | MS.gene070328:CDS | 35.0% | |
GATTTAGTGTAAGAAAAGGG+AGG | - | chr4.1:5952111-5952130 | MS.gene070328:intron | 35.0% | |
GCTTGATATTGGAGTTAAGA+GGG | - | chr4.1:5953893-5953912 | MS.gene070328:intron | 35.0% | |
GTTGAAATTGATTGAAGCTG+GGG | - | chr4.1:5952538-5952557 | MS.gene070328:intron | 35.0% | |
TAATGAATATGGAGGTGAAG+TGG | - | chr4.1:5952208-5952227 | MS.gene070328:CDS | 35.0% | |
TCACTACTGTTTATAACACG+AGG | + | chr4.1:5953376-5953395 | None:intergenic | 35.0% | |
TGCACACTGTAATAGAACAT+AGG | + | chr4.1:5952611-5952630 | None:intergenic | 35.0% | |
TGCTTGATATTGGAGTTAAG+AGG | - | chr4.1:5953892-5953911 | MS.gene070328:intron | 35.0% | |
TGTCACAAGTTCGAATCTAT+GGG | - | chr4.1:5953601-5953620 | MS.gene070328:intron | 35.0% | |
TGTTGAGATGCATCAAATGA+AGG | + | chr4.1:5954294-5954313 | None:intergenic | 35.0% | |
TTCATTTGATGCATCTCAAC+AGG | - | chr4.1:5954293-5954312 | MS.gene070328:CDS | 35.0% | |
TTGGAATTATTTAGGGGAAG+AGG | - | chr4.1:5952451-5952470 | MS.gene070328:intron | 35.0% | |
TTGTCACAAGTTCGAATCTA+TGG | - | chr4.1:5953600-5953619 | MS.gene070328:intron | 35.0% | |
TTTAGTGGCATTTGAGAAGA+TGG | - | chr4.1:5953291-5953310 | MS.gene070328:CDS | 35.0% | |
! | CTACCTTGATAATTGCTACT+TGG | + | chr4.1:5954615-5954634 | None:intergenic | 35.0% |
! | CTCGTTTGACTAATGTCTTT+TGG | - | chr4.1:5952645-5952664 | MS.gene070328:intron | 35.0% |
! | CTTATGAAAGAGCTGATTCA+AGG | - | chr4.1:5952231-5952250 | MS.gene070328:intron | 35.0% |
! | CTTGTTAAGATGTATTGGTC+AGG | + | chr4.1:5953682-5953701 | None:intergenic | 35.0% |
! | GAGAGTACAAATAGTGCTTT+GGG | - | chr4.1:5953232-5953251 | MS.gene070328:CDS | 35.0% |
! | GAGTTTTACTGTTCCAAAGA+AGG | - | chr4.1:5952176-5952195 | MS.gene070328:CDS | 35.0% |
! | TGAGAGTACAAATAGTGCTT+TGG | - | chr4.1:5953231-5953250 | MS.gene070328:CDS | 35.0% |
!! | ACTAATGTCTTTTGGAGAGA+TGG | - | chr4.1:5952653-5952672 | MS.gene070328:intron | 35.0% |
!!! | CAATTTAGTTTTGGAATCCC+AGG | - | chr4.1:5953837-5953856 | MS.gene070328:intron | 35.0% |
AACAAATGTCTTTGCTCAGG+AGG | + | chr4.1:5952350-5952369 | None:intergenic | 40.0% | |
AAGACTTCAGAATAGCGTTG+CGG | + | chr4.1:5953813-5953832 | None:intergenic | 40.0% | |
AATGAGTATCTTAATGGGGC+AGG | - | chr4.1:5953451-5953470 | MS.gene070328:CDS | 40.0% | |
ACAGATCAAGATCCAGCTAT+GGG | - | chr4.1:5952905-5952924 | MS.gene070328:CDS | 40.0% | |
ACCATCGAACATTGAATTGG+AGG | + | chr4.1:5953770-5953789 | None:intergenic | 40.0% | |
ACCTCCAATTCAATGTTCGA+TGG | - | chr4.1:5953766-5953785 | MS.gene070328:intron | 40.0% | |
AGCAACAACATCCTTCAAGT+TGG | - | chr4.1:5954397-5954416 | MS.gene070328:CDS | 40.0% | |
AGGAGACCTCATAAAGTCTA+TGG | - | chr4.1:5952400-5952419 | MS.gene070328:intron | 40.0% | |
ATCAACTTCATGGGCACAAA+TGG | - | chr4.1:5953119-5953138 | MS.gene070328:CDS | 40.0% | |
ATGTTAGCAAGGAAGGAGTT+TGG | - | chr4.1:5952282-5952301 | MS.gene070328:intron | 40.0% | |
ATTCATCATCTCATCCCAAG+TGG | + | chr4.1:5953095-5953114 | None:intergenic | 40.0% | |
CAAATTGCAAAGCTATGGTG+AGG | - | chr4.1:5952255-5952274 | MS.gene070328:intron | 40.0% | |
CCTCCAAGTAGCAATTATCA+AGG | - | chr4.1:5954609-5954628 | MS.gene070328:CDS | 40.0% | |
CTACTGTTTATAACACGAGG+AGG | + | chr4.1:5953373-5953392 | None:intergenic | 40.0% | |
CTCGTTCAATTATTTCAGCC+AGG | - | chr4.1:5954470-5954489 | MS.gene070328:CDS | 40.0% | |
GCAAGTAATTCTTAAGTGGG+TGG | - | chr4.1:5954219-5954238 | MS.gene070328:CDS | 40.0% | |
GCATTTAAACCCCAACTTGA+AGG | + | chr4.1:5954411-5954430 | None:intergenic | 40.0% | |
GGTGAGGTTTAATGTTAGCA+AGG | - | chr4.1:5952271-5952290 | MS.gene070328:intron | 40.0% | |
GTCGGTGGATATAACAATCT+TGG | - | chr4.1:5952473-5952492 | MS.gene070328:intron | 40.0% | |
TAATTCTTAAGTGGGTGGAG+TGG | - | chr4.1:5954224-5954243 | MS.gene070328:CDS | 40.0% | |
TACAGATCAAGATCCAGCTA+TGG | - | chr4.1:5952904-5952923 | MS.gene070328:CDS | 40.0% | |
TGTATGCAATTCGCAGCAAA+TGG | - | chr4.1:5953152-5953171 | MS.gene070328:CDS | 40.0% | |
TTCTTTGCAGTCATGCTTTG+CGG | - | chr4.1:5953626-5953645 | MS.gene070328:intron | 40.0% | |
TTGAGAAGATGGTGAAAAGG+TGG | - | chr4.1:5953302-5953321 | MS.gene070328:CDS | 40.0% | |
TTGAGAGATCCCAAATGTGA+AGG | + | chr4.1:5953001-5953020 | None:intergenic | 40.0% | |
TTTGGACTCATCCACTTCTA+TGG | - | chr4.1:5953567-5953586 | MS.gene070328:intron | 40.0% | |
! | ATGATTTGTGCCCCATTTGT+TGG | - | chr4.1:5952752-5952771 | MS.gene070328:CDS | 40.0% |
! | ATGTTCGATGGTGATGATTC+CGG | - | chr4.1:5953778-5953797 | MS.gene070328:intron | 40.0% |
! | CCTTGATAATTGCTACTTGG+AGG | + | chr4.1:5954612-5954631 | None:intergenic | 40.0% |
! | CTGAGCAAAGACATTTGTTG+CGG | - | chr4.1:5952351-5952370 | MS.gene070328:CDS | 40.0% |
! | GAAGGATGTTGTTGCTGTTA+AGG | + | chr4.1:5954393-5954412 | None:intergenic | 40.0% |
! | GCAACAACATCCTTCAAGTT+GGG | - | chr4.1:5954398-5954417 | MS.gene070328:CDS | 40.0% |
! | GTTTGGTTGTGCTTTGTTGT+TGG | - | chr4.1:5952802-5952821 | MS.gene070328:CDS | 40.0% |
! | TGATTTGTGCCCCATTTGTT+GGG | - | chr4.1:5952753-5952772 | MS.gene070328:CDS | 40.0% |
!! | CAACAACATCCTTCAAGTTG+GGG | - | chr4.1:5954399-5954418 | MS.gene070328:CDS | 40.0% |
!!! | TTGTGCTTTTTTGTCCTCCT+GGG | + | chr4.1:5953857-5953876 | None:intergenic | 40.0% |
!!! | TTTAGTTTTGGAATCCCAGG+AGG | - | chr4.1:5953840-5953859 | MS.gene070328:intron | 40.0% |
!!! | TTTGTGCTTTTTTGTCCTCC+TGG | + | chr4.1:5953858-5953877 | None:intergenic | 40.0% |
AACTCTACGACATGCATCCT+TGG | - | chr4.1:5953396-5953415 | MS.gene070328:CDS | 45.0% | |
AATTCGCAGCAAATGGAGCA+CGG | - | chr4.1:5953159-5953178 | MS.gene070328:CDS | 45.0% | |
ACTGCAGCTAACCATAGAAG+TGG | + | chr4.1:5953581-5953600 | None:intergenic | 45.0% | |
ATCACATCGACCAATCTCCA+CGG | + | chr4.1:5953488-5953507 | None:intergenic | 45.0% | |
CAAGCACATGCCTTCAAAAC+AGG | - | chr4.1:5952089-5952108 | MS.gene070328:intron | 45.0% | |
CACAGTCGATGACGTGTATT+TGG | + | chr4.1:5952953-5952972 | None:intergenic | 45.0% | |
CGCAACAAATGTCTTTGCTC+AGG | + | chr4.1:5952353-5952372 | None:intergenic | 45.0% | |
GAAAAGGTGGCGACAATTAG+AGG | - | chr4.1:5953315-5953334 | MS.gene070328:CDS | 45.0% | |
GTTTCGCAAAGACGAAAGGA+AGG | - | chr4.1:5954021-5954040 | MS.gene070328:CDS | 45.0% | |
TTACAGTGTGCAGCTAGATC+AGG | - | chr4.1:5952619-5952638 | MS.gene070328:intron | 45.0% | |
!! | AGTGCTTTGGGAGATATTGC+AGG | - | chr4.1:5953244-5953263 | MS.gene070328:CDS | 45.0% |
!! | AAATATTAAATTTATAATGA+TGG | + | chr4.1:5954333-5954352 | None:intergenic | 5.0% |
AGCGTTGCGGTAAAGAAGAC+CGG | + | chr4.1:5953800-5953819 | None:intergenic | 50.0% | |
AGGTCTAGTGTTCGCCAGAA+AGG | - | chr4.1:5954041-5954060 | MS.gene070328:CDS | 50.0% | |
CCAATTGCTTTGCCCATAGC+TGG | + | chr4.1:5952920-5952939 | None:intergenic | 50.0% | |
CCAGCTATGGGCAAAGCAAT+TGG | - | chr4.1:5952917-5952936 | MS.gene070328:CDS | 50.0% | |
CCTCGTTTCGCAAAGACGAA+AGG | - | chr4.1:5954017-5954036 | MS.gene070328:CDS | 50.0% | |
CCTTTCGTCTTTGCGAAACG+AGG | + | chr4.1:5954020-5954039 | None:intergenic | 50.0% | |
GAGTATCTTAATGGGGCAGG+TGG | - | chr4.1:5953454-5953473 | MS.gene070328:CDS | 50.0% | |
TATTTAGGGGAAGAGGTCGG+TGG | - | chr4.1:5952458-5952477 | MS.gene070328:intron | 50.0% | |
! | CACGTCATCGACTGTGTTTG+TGG | - | chr4.1:5952957-5952976 | MS.gene070328:CDS | 50.0% |
!! | GGAAGCACTTCCGTGGAGAT+TGG | - | chr4.1:5953475-5953494 | MS.gene070328:CDS | 55.0% |
!! | GGCAGGTGGAAGCACTTCCG+TGG | - | chr4.1:5953468-5953487 | MS.gene070328:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 5951990 | 5954641 | 5951990 | ID=MS.gene070328 |
chr4.1 | mRNA | 5951990 | 5954641 | 5951990 | ID=MS.gene070328.t1;Parent=MS.gene070328 |
chr4.1 | exon | 5953957 | 5954641 | 5953957 | ID=MS.gene070328.t1.exon1;Parent=MS.gene070328.t1 |
chr4.1 | CDS | 5953957 | 5954641 | 5953957 | ID=cds.MS.gene070328.t1;Parent=MS.gene070328.t1 |
chr4.1 | exon | 5952748 | 5953566 | 5952748 | ID=MS.gene070328.t1.exon2;Parent=MS.gene070328.t1 |
chr4.1 | CDS | 5952748 | 5953566 | 5952748 | ID=cds.MS.gene070328.t1;Parent=MS.gene070328.t1 |
chr4.1 | exon | 5952317 | 5952396 | 5952317 | ID=MS.gene070328.t1.exon3;Parent=MS.gene070328.t1 |
chr4.1 | CDS | 5952317 | 5952396 | 5952317 | ID=cds.MS.gene070328.t1;Parent=MS.gene070328.t1 |
chr4.1 | exon | 5952140 | 5952232 | 5952140 | ID=MS.gene070328.t1.exon4;Parent=MS.gene070328.t1 |
chr4.1 | CDS | 5952140 | 5952232 | 5952140 | ID=cds.MS.gene070328.t1;Parent=MS.gene070328.t1 |
chr4.1 | exon | 5951990 | 5952046 | 5951990 | ID=MS.gene070328.t1.exon5;Parent=MS.gene070328.t1 |
chr4.1 | CDS | 5951990 | 5952046 | 5951990 | ID=cds.MS.gene070328.t1;Parent=MS.gene070328.t1 |
Gene Sequence |
Protein sequence |