Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070865.t1 | AES95929.2 | 95.5 | 617 | 28 | 0 | 3 | 619 | 55 | 671 | 0.00E+00 | 1240.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070865.t1 | Q8RJP2 | 25.9 | 541 | 309 | 22 | 86 | 613 | 116 | 577 | 1.2e-32 | 142.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070865.t1 | G7KGH4 | 95.5 | 617 | 28 | 0 | 3 | 619 | 55 | 671 | 0.0e+00 | 1240.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058848 | MS.gene070865 | 0.819875 | 9.23E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070865.t1 | MTR_5g031170 | 95.462 | 617 | 28 | 0 | 3 | 619 | 55 | 671 | 0.0 | 1222 |
| MS.gene070865.t1 | MTR_8g068160 | 65.645 | 620 | 203 | 4 | 3 | 613 | 64 | 682 | 0.0 | 847 |
| MS.gene070865.t1 | MTR_8g068110 | 65.916 | 622 | 201 | 5 | 3 | 615 | 63 | 682 | 0.0 | 830 |
| MS.gene070865.t1 | MTR_8g068110 | 64.976 | 631 | 201 | 6 | 3 | 615 | 63 | 691 | 0.0 | 822 |
| MS.gene070865.t1 | MTR_8g068120 | 63.275 | 629 | 201 | 7 | 3 | 615 | 72 | 686 | 0.0 | 805 |
| MS.gene070865.t1 | MTR_5g066770 | 53.016 | 630 | 275 | 8 | 4 | 613 | 15 | 643 | 0.0 | 673 |
| MS.gene070865.t1 | MTR_3g111420 | 53.859 | 622 | 274 | 6 | 4 | 615 | 33 | 651 | 0.0 | 672 |
| MS.gene070865.t1 | MTR_3g111410 | 50.635 | 630 | 294 | 7 | 4 | 619 | 15 | 641 | 0.0 | 658 |
| MS.gene070865.t1 | MTR_3g111380 | 52.201 | 636 | 282 | 7 | 1 | 615 | 14 | 648 | 0.0 | 646 |
| MS.gene070865.t1 | MTR_3g111380 | 54.482 | 569 | 251 | 6 | 54 | 615 | 2 | 569 | 0.0 | 609 |
| MS.gene070865.t1 | MTR_3g111380 | 54.919 | 559 | 244 | 6 | 64 | 615 | 3 | 560 | 0.0 | 602 |
| MS.gene070865.t1 | MTR_3g111380 | 55.939 | 522 | 222 | 6 | 101 | 615 | 3 | 523 | 0.0 | 568 |
| MS.gene070865.t1 | MTR_3g111380 | 57.202 | 486 | 200 | 6 | 137 | 615 | 14 | 498 | 0.0 | 538 |
| MS.gene070865.t1 | MTR_3g111380 | 56.283 | 382 | 162 | 4 | 238 | 615 | 1 | 381 | 2.97e-145 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070865.t1 | AT2G22620 | 55.395 | 621 | 264 | 6 | 4 | 616 | 62 | 677 | 0.0 | 709 |
| MS.gene070865.t1 | AT2G22620 | 55.395 | 621 | 264 | 6 | 4 | 616 | 62 | 677 | 0.0 | 709 |
| MS.gene070865.t1 | AT1G09890 | 53.130 | 623 | 276 | 9 | 4 | 614 | 15 | 633 | 0.0 | 664 |
| MS.gene070865.t1 | AT1G09890 | 52.979 | 621 | 276 | 9 | 6 | 614 | 1 | 617 | 0.0 | 660 |
| MS.gene070865.t1 | AT1G09890 | 52.970 | 623 | 272 | 10 | 4 | 614 | 15 | 628 | 0.0 | 654 |
| MS.gene070865.t1 | AT1G09890 | 51.159 | 647 | 276 | 10 | 4 | 614 | 15 | 657 | 0.0 | 652 |
| MS.gene070865.t1 | AT1G09910 | 50.161 | 622 | 296 | 7 | 4 | 615 | 58 | 675 | 0.0 | 642 |
| MS.gene070865.t1 | AT1G09910 | 50.161 | 622 | 296 | 7 | 4 | 615 | 15 | 632 | 0.0 | 641 |
| MS.gene070865.t1 | AT1G09910 | 50.161 | 622 | 296 | 7 | 4 | 615 | 15 | 632 | 0.0 | 641 |
| MS.gene070865.t1 | AT4G38030 | 50.240 | 625 | 286 | 10 | 3 | 614 | 53 | 665 | 0.0 | 638 |
| MS.gene070865.t1 | AT1G09880 | 50.159 | 630 | 292 | 8 | 4 | 615 | 79 | 704 | 0.0 | 638 |
| MS.gene070865.t1 | AT1G09880 | 50.159 | 630 | 292 | 8 | 4 | 615 | 65 | 690 | 0.0 | 637 |
| MS.gene070865.t1 | AT1G09880 | 50.159 | 630 | 292 | 8 | 4 | 615 | 33 | 658 | 0.0 | 637 |
| MS.gene070865.t1 | AT1G09880 | 50.000 | 628 | 292 | 8 | 6 | 615 | 1 | 624 | 0.0 | 634 |
| MS.gene070865.t1 | AT4G37950 | 51.994 | 627 | 276 | 10 | 3 | 614 | 60 | 676 | 0.0 | 630 |
| MS.gene070865.t1 | AT4G37950 | 51.994 | 627 | 276 | 10 | 3 | 614 | 60 | 676 | 0.0 | 630 |
| MS.gene070865.t1 | AT4G24430 | 51.115 | 628 | 285 | 10 | 4 | 613 | 16 | 639 | 0.0 | 620 |
| MS.gene070865.t1 | AT2G22620 | 56.600 | 500 | 206 | 4 | 4 | 496 | 62 | 557 | 0.0 | 597 |
| MS.gene070865.t1 | AT2G22620 | 58.078 | 489 | 199 | 4 | 131 | 616 | 112 | 597 | 0.0 | 587 |
| MS.gene070865.t1 | AT1G09890 | 51.418 | 529 | 219 | 8 | 4 | 497 | 15 | 540 | 0.0 | 538 |
| MS.gene070865.t1 | AT4G24430 | 51.527 | 524 | 242 | 8 | 99 | 613 | 1 | 521 | 0.0 | 536 |
| MS.gene070865.t1 | AT2G22620 | 53.865 | 414 | 180 | 4 | 4 | 410 | 62 | 471 | 9.32e-156 | 456 |
| MS.gene070865.t1 | AT1G65210 | 54.545 | 187 | 82 | 3 | 429 | 614 | 62 | 246 | 2.80e-61 | 204 |
Find 147 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCAACTGTTTGGGAAAT+TGG | 0.140397 | 5.4:+21281129 | MS.gene070865:CDS |
| ATTCACAGGGCTATCAATTT+TGG | 0.141260 | 5.4:+21280641 | MS.gene070865:intron |
| AATCAAGATTTGACTCATTT+TGG | 0.163949 | 5.4:+21282239 | MS.gene070865:CDS |
| TTACCTGGTTTAATTGTAAT+TGG | 0.186445 | 5.4:-21280772 | None:intergenic |
| CACCTTTGGTCTATGTTTAT+AGG | 0.189602 | 5.4:-21279005 | None:intergenic |
| CCTAGTGTTCATTTGGTAAA+AGG | 0.192340 | 5.4:+21282193 | MS.gene070865:CDS |
| AACTTGTTTGCATGGGTTCC+TGG | 0.239806 | 5.4:+21280721 | MS.gene070865:CDS |
| TTTGATTGAATAAAATTATA+AGG | 0.246769 | 5.4:-21280305 | None:intergenic |
| CAAACAGTTGGGCCATTTCT+TGG | 0.250334 | 5.4:-21281120 | None:intergenic |
| CCTTTAAATTGTGGATTAGA+TGG | 0.252359 | 5.4:-21279509 | None:intergenic |
| ACCTTTGGTCTATGTTTATA+GGG | 0.259445 | 5.4:-21279004 | None:intergenic |
| AACCAATACAATCAAGTTAA+TGG | 0.265535 | 5.4:+21279716 | MS.gene070865:CDS |
| TCCCTTACTTTGGCAAATCC+TGG | 0.281064 | 5.4:+21278541 | MS.gene070865:CDS |
| AGAAGGAGAGACTTATAAAA+AGG | 0.289826 | 5.4:+21280077 | MS.gene070865:CDS |
| AAGGGCATGGAGTTCTTCTA+TGG | 0.291408 | 5.4:+21278968 | MS.gene070865:CDS |
| CCATCTAATCCACAATTTAA+AGG | 0.292305 | 5.4:+21279509 | MS.gene070865:CDS |
| AAGTCTCTCCTTCTTGGAAT+TGG | 0.315514 | 5.4:-21280068 | None:intergenic |
| CAAGAAATGGCCCAACTGTT+TGG | 0.318768 | 5.4:+21281121 | MS.gene070865:CDS |
| ATAGTGAGAAAAGGCGATTC+TGG | 0.321658 | 5.4:+21279140 | MS.gene070865:CDS |
| GGACTTGTAAATGTCCGGTT+AGG | 0.325730 | 5.4:-21280358 | None:intergenic |
| CTATTAAAGTTGATCAAATA+AGG | 0.328562 | 5.4:+21279207 | MS.gene070865:CDS |
| TGCATGCAGCTTCAACTATA+TGG | 0.332495 | 5.4:+21279391 | MS.gene070865:intron |
| AGTTAGTTACCTGGCTTCCT+TGG | 0.333504 | 5.4:-21279243 | None:intergenic |
| CCCTTACTTTGGCAAATCCT+GGG | 0.334655 | 5.4:+21278542 | MS.gene070865:CDS |
| ATGGAATCCATGGATTATAT+TGG | 0.336026 | 5.4:+21282152 | MS.gene070865:CDS |
| TTAATAGCAGGGAATCCTTT+TGG | 0.336570 | 5.4:-21279191 | None:intergenic |
| GTCTTAGGAATATCATATTC+TGG | 0.344765 | 5.4:+21278571 | MS.gene070865:CDS |
| ATCCATTAACTTGATTGTAT+TGG | 0.349422 | 5.4:-21279718 | None:intergenic |
| GTTAGGGTTCCACGTTGATT+AGG | 0.350575 | 5.4:-21280341 | None:intergenic |
| TACATTGGTCTAGCTTGGCC+TGG | 0.352021 | 5.4:+21280510 | MS.gene070865:CDS |
| TACCTGCACTTCAGCATTAG+AGG | 0.353948 | 5.4:-21281743 | None:intergenic |
| AAGATCAATTTAAATCTCTA+TGG | 0.354867 | 5.4:+21280142 | MS.gene070865:CDS |
| ATATGGCAATATCAGATATT+AGG | 0.356406 | 5.4:+21279408 | MS.gene070865:CDS |
| TATGATAGGTTTAGGCAATA+TGG | 0.358897 | 5.4:+21281434 | MS.gene070865:intron |
| ATGGAAAATGTACTTGAATC+TGG | 0.376558 | 5.4:+21278595 | MS.gene070865:CDS |
| AAGAAATGGCCCAACTGTTT+GGG | 0.377978 | 5.4:+21281122 | MS.gene070865:CDS |
| GGTTTAGGCAATATGGTCTA+TGG | 0.378350 | 5.4:+21281441 | MS.gene070865:intron |
| GGAAATGAAGATGATGATAG+AGG | 0.381623 | 5.4:+21278616 | MS.gene070865:CDS |
| CTAGCTTGGCCTGGGGATGC+AGG | 0.388413 | 5.4:+21280519 | MS.gene070865:CDS |
| TGCCATGATCCTGCATCCCC+AGG | 0.390903 | 5.4:-21280528 | None:intergenic |
| CCCCAGGATTTGCCAAAGTA+AGG | 0.394846 | 5.4:-21278543 | None:intergenic |
| TACGAGTGAATTCAAGTTGA+TGG | 0.396239 | 5.4:-21281088 | None:intergenic |
| TTATAACAAAGTTTCCGTTT+TGG | 0.402120 | 5.4:-21280675 | None:intergenic |
| TATTCTCTTTGTTGTGAAGT+AGG | 0.402262 | 5.4:-21282104 | None:intergenic |
| ATGAACACTAGGTACTTCTA+TGG | 0.404001 | 5.4:-21282182 | None:intergenic |
| ACATTGGTCTAGCTTGGCCT+GGG | 0.407469 | 5.4:+21280511 | MS.gene070865:CDS |
| AGAAGTACCTAGTGTTCATT+TGG | 0.408895 | 5.4:+21282186 | MS.gene070865:CDS |
| GTTAGTTACCTGGCTTCCTT+GGG | 0.409083 | 5.4:-21279242 | None:intergenic |
| ATTCTCTTTGTTGTGAAGTA+GGG | 0.410957 | 5.4:-21282103 | None:intergenic |
| AACTTACAGAGAGGCAAGTT+GGG | 0.416244 | 5.4:-21279847 | None:intergenic |
| AATTCTCCAGCTGAGCGATC+TGG | 0.416473 | 5.4:-21281156 | None:intergenic |
| TGTGTTAAGAGAACAGCTTC+AGG | 0.421768 | 5.4:-21279485 | None:intergenic |
| GGTTTCAACTTTGTAGTTGA+AGG | 0.426228 | 5.4:-21282298 | None:intergenic |
| GGTTTAGAGACTAACTGGTC+TGG | 0.426955 | 5.4:-21281234 | None:intergenic |
| GTTACCTCTCCTTTAAATTG+TGG | 0.429246 | 5.4:-21279518 | None:intergenic |
| GATGTGAGATCTTGCTTAAC+GGG | 0.429375 | 5.4:-21279815 | None:intergenic |
| GAATTCAAGTAAACAAAGAT+AGG | 0.433996 | 5.4:-21280108 | None:intergenic |
| AATCAACGTGGAACCCTAAC+CGG | 0.443227 | 5.4:+21280344 | MS.gene070865:CDS |
| ATTTGATCAACTTTAATAGC+AGG | 0.447303 | 5.4:-21279203 | None:intergenic |
| GTATATAAGCCTCCAAGAAA+TGG | 0.447758 | 5.4:+21281108 | MS.gene070865:CDS |
| GTCTTGGACTTGTAAATGTC+CGG | 0.451859 | 5.4:-21280363 | None:intergenic |
| ACGAGGTTAGCGTAAGGCTT+TGG | 0.452758 | 5.4:-21281186 | None:intergenic |
| GGCCTGGGGATGCAGGATCA+TGG | 0.454305 | 5.4:+21280526 | MS.gene070865:CDS |
| TATAGGTATATAGTGAGAAA+AGG | 0.454887 | 5.4:+21279131 | MS.gene070865:intron |
| CAGGATCTTGTTTACACAGT+TGG | 0.455563 | 5.4:+21281491 | MS.gene070865:CDS |
| TGGCATCATGTCCCTTACTT+TGG | 0.456230 | 5.4:+21278531 | MS.gene070865:CDS |
| GACTTGTAAATGTCCGGTTA+GGG | 0.463817 | 5.4:-21280357 | None:intergenic |
| GGTCGTACAACTTGTTTGCA+TGG | 0.467064 | 5.4:+21280713 | MS.gene070865:CDS |
| TGCCAATTTCCCAAACAGTT+GGG | 0.472457 | 5.4:-21281131 | None:intergenic |
| GGCATTCCAGATCGCTCAGC+TGG | 0.474004 | 5.4:+21281150 | MS.gene070865:CDS |
| TGGAAGATTATATTTGATCA+TGG | 0.475105 | 5.4:+21281673 | MS.gene070865:CDS |
| TGTTGTGAAGTAGGGAGGAT+TGG | 0.476508 | 5.4:-21282095 | None:intergenic |
| CAGCATTAGAGGCACTTGCT+AGG | 0.490093 | 5.4:-21281732 | None:intergenic |
| TCGTTAATGTATACCCGTCT+TGG | 0.490306 | 5.4:-21280379 | None:intergenic |
| ATGCCAATTTCCCAAACAGT+TGG | 0.493759 | 5.4:-21281132 | None:intergenic |
| GTCGTACAACTTGTTTGCAT+GGG | 0.494529 | 5.4:+21280714 | MS.gene070865:CDS |
| TGCCTCTAATGCTGAAGTGC+AGG | 0.498076 | 5.4:+21281741 | MS.gene070865:CDS |
| GTGGTATTTGAACGACCAAA+AGG | 0.498149 | 5.4:+21279176 | MS.gene070865:CDS |
| GCATGGGTTCCTGGCTACAT+TGG | 0.500062 | 5.4:+21280730 | MS.gene070865:CDS |
| TTAGTAACTATCGAAAGGAT+TGG | 0.501373 | 5.4:+21281516 | MS.gene070865:CDS |
| TACGTCTTTGCCAGCATAGT+GGG | 0.502430 | 5.4:-21280040 | None:intergenic |
| ATGGACAGATGCTAAACAAA+AGG | 0.504220 | 5.4:+21280161 | MS.gene070865:CDS |
| CCTTACTTTGGCAAATCCTG+GGG | 0.509142 | 5.4:+21278543 | MS.gene070865:CDS |
| TTTGTAAGCACCCACTATGC+TGG | 0.510502 | 5.4:+21280030 | MS.gene070865:CDS |
| ATACCAAGGCATGGAATCCA+TGG | 0.511293 | 5.4:+21282142 | MS.gene070865:CDS |
| ACAGTTGGGCCATTTCTTGG+AGG | 0.513318 | 5.4:-21281117 | None:intergenic |
| GTTTAGAGACTAACTGGTCT+GGG | 0.514147 | 5.4:-21281233 | None:intergenic |
| TTTGATCAACTTTAATAGCA+GGG | 0.515830 | 5.4:-21279202 | None:intergenic |
| CTCTTTGTTGTGAAGTAGGG+AGG | 0.516658 | 5.4:-21282100 | None:intergenic |
| AGATGTGAGATCTTGCTTAA+CGG | 0.517376 | 5.4:-21279816 | None:intergenic |
| GAACTTACAGAGAGGCAAGT+TGG | 0.518644 | 5.4:-21279848 | None:intergenic |
| GACATTTACAAGTCCAAGAC+GGG | 0.518790 | 5.4:+21280366 | MS.gene070865:CDS |
| ATGCATACATTGGTCTAGCT+TGG | 0.520047 | 5.4:+21280505 | MS.gene070865:CDS |
| AATTACCATTGCAGAGTCCA+TGG | 0.520639 | 5.4:+21278891 | MS.gene070865:intron |
| AGATATTAGGCAAAGAAGAA+TGG | 0.520707 | 5.4:+21279421 | MS.gene070865:CDS |
| ATGGATTCCATGCCTTGGTA+TGG | 0.521822 | 5.4:-21282140 | None:intergenic |
| AGCATTAGAGGCACTTGCTA+GGG | 0.522110 | 5.4:-21281731 | None:intergenic |
| CGACTGAGAAACTTGTTCCA+TGG | 0.523830 | 5.4:-21278908 | None:intergenic |
| CTCTCCTTCTTGGAATTGGA+TGG | 0.525171 | 5.4:-21280064 | None:intergenic |
| AGGAATATCATATTCTGGAA+TGG | 0.543447 | 5.4:+21278576 | MS.gene070865:CDS |
| TTTCAGGTGGTGATTAGCAA+TGG | 0.543809 | 5.4:+21278511 | MS.gene070865:intron |
| TACTTCACAACAAAGAGAAT+AGG | 0.544075 | 5.4:+21282106 | MS.gene070865:CDS |
| AATACAATCAAGTTAATGGA+TGG | 0.547110 | 5.4:+21279720 | MS.gene070865:CDS |
| TAAACAACCAATATAATCCA+TGG | 0.550594 | 5.4:-21282159 | None:intergenic |
| TGGACTAGAGCAGACCAAAA+CGG | 0.552412 | 5.4:+21280661 | MS.gene070865:CDS |
| AATCCATGGATTCCATGCCT+TGG | 0.552884 | 5.4:-21282145 | None:intergenic |
| AGGGTTCCACGTTGATTAGG+TGG | 0.553836 | 5.4:-21280338 | None:intergenic |
| AATTATATATGCAGGAGCAC+AGG | 0.554184 | 5.4:+21281625 | MS.gene070865:intron |
| AACACAGAACGAGAATATAG+TGG | 0.554593 | 5.4:+21278932 | MS.gene070865:CDS |
| TTGTAATCTCCAATGTAGCC+AGG | 0.558313 | 5.4:-21280739 | None:intergenic |
| TATCGACTGAACTCAAAAGT+TGG | 0.559908 | 5.4:+21280282 | MS.gene070865:CDS |
| CTTACTTTGGCAAATCCTGG+GGG | 0.563800 | 5.4:+21278544 | MS.gene070865:CDS |
| AGGGCATGGAGTTCTTCTAT+GGG | 0.567553 | 5.4:+21278969 | MS.gene070865:CDS |
| CCATTGCGGAACTCATTACT+CGG | 0.568971 | 5.4:-21279788 | None:intergenic |
| CAGCGATTTATATCCAACTC+AGG | 0.575588 | 5.4:+21281472 | MS.gene070865:CDS |
| CCCAGGATTTGCCAAAGTAA+GGG | 0.577911 | 5.4:-21278542 | None:intergenic |
| TTGGATATAAATCGCTGTAA+CGG | 0.579754 | 5.4:-21281466 | None:intergenic |
| ATCATGGCAGAGAGAAAGCA+AGG | 0.584093 | 5.4:+21280542 | MS.gene070865:CDS |
| AGTAATGAGTTCCGCAATGG+TGG | 0.585879 | 5.4:+21279791 | MS.gene070865:CDS |
| AATGCTAAGAATGCATACAT+TGG | 0.588205 | 5.4:+21280495 | MS.gene070865:CDS |
| CTACGTCTTTGCCAGCATAG+TGG | 0.588233 | 5.4:-21280041 | None:intergenic |
| GAAATGAAGATGATGATAGA+GGG | 0.589688 | 5.4:+21278617 | MS.gene070865:CDS |
| TGGTGTTAGTAACTATCGAA+AGG | 0.597830 | 5.4:+21281511 | MS.gene070865:CDS |
| TTGATTGTATTGGTTCTCAG+TGG | 0.609971 | 5.4:-21279708 | None:intergenic |
| TAATCCACAATTTAAAGGAG+AGG | 0.612404 | 5.4:+21279514 | MS.gene070865:CDS |
| GATAGTGCCATACCAAGGCA+TGG | 0.612532 | 5.4:+21282133 | MS.gene070865:CDS |
| ATAAATTTCAAGCAACCACA+TGG | 0.612722 | 5.4:+21281653 | MS.gene070865:CDS |
| GATCATGGTGCTGTAATAAG+TGG | 0.615908 | 5.4:+21281688 | MS.gene070865:CDS |
| CTGTTCACGAGGTTAGCGTA+AGG | 0.616934 | 5.4:-21281192 | None:intergenic |
| TTACTTTGGCAAATCCTGGG+GGG | 0.623303 | 5.4:+21278545 | MS.gene070865:CDS |
| GCAAACAAGTTGTACGACCC+AGG | 0.623351 | 5.4:-21280709 | None:intergenic |
| CAAGATCTCACATCTCATGT+TGG | 0.624859 | 5.4:+21279824 | MS.gene070865:CDS |
| CATTGGTCTAGCTTGGCCTG+GGG | 0.625777 | 5.4:+21280512 | MS.gene070865:CDS |
| TCCCTATAAACATAGACCAA+AGG | 0.628590 | 5.4:+21279003 | MS.gene070865:CDS |
| GTGTAAACAAGATCCTGAGT+TGG | 0.634528 | 5.4:-21281485 | None:intergenic |
| GGACATTTACAAGTCCAAGA+CGG | 0.637789 | 5.4:+21280365 | MS.gene070865:CDS |
| CCGAGTAATGAGTTCCGCAA+TGG | 0.639316 | 5.4:+21279788 | MS.gene070865:CDS |
| ATCAAATATAATCTTCCATG+TGG | 0.640692 | 5.4:-21281668 | None:intergenic |
| TCTCCAATTACAATTAAACC+AGG | 0.641476 | 5.4:+21280769 | MS.gene070865:CDS |
| TCAATGAAAGATAGAGATGA+CGG | 0.642085 | 5.4:+21279446 | MS.gene070865:CDS |
| GTAGCCATCCAATTCCAAGA+AGG | 0.653857 | 5.4:+21280060 | MS.gene070865:CDS |
| GCTTAACGGGTCCACCATTG+CGG | 0.655063 | 5.4:-21279802 | None:intergenic |
| GAGATGATAGTGCCATACCA+AGG | 0.696169 | 5.4:+21282128 | MS.gene070865:CDS |
| TCGTGAATAATCTGTTCACG+AGG | 0.698648 | 5.4:-21281203 | None:intergenic |
| TAGTTGAAGGACTTTCTAAG+CGG | 0.700259 | 5.4:-21282285 | None:intergenic |
| ACAGAACGAGAATATAGTGG+AGG | 0.712115 | 5.4:+21278935 | MS.gene070865:CDS |
| TTCATTCCACCTAATCAACG+TGG | 0.715096 | 5.4:+21280332 | MS.gene070865:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAGGTTTATAATA+AGG | - | chr5.4:21281322-21281341 | None:intergenic | 10.0% |
| !! | AAAAAATAGGTTTATAATAA+GGG | - | chr5.4:21281321-21281340 | None:intergenic | 10.0% |
| !! | TAATTATAAACATATTAATG+TGG | + | chr5.4:21278274-21278293 | MS.gene070865:intron | 10.0% |
| !! | TTTGATTGAATAAAATTATA+AGG | - | chr5.4:21280308-21280327 | None:intergenic | 10.0% |
| !!! | AGATAATGAAATTATTTTAA+AGG | - | chr5.4:21281851-21281870 | None:intergenic | 10.0% |
| !! | ACAATCAATATAATATCATA+TGG | + | chr5.4:21280815-21280834 | MS.gene070865:intron | 15.0% |
| !! | AGTAATATAAAGATTTACAA+TGG | - | chr5.4:21278302-21278321 | None:intergenic | 15.0% |
| !! | ATAAGAGACTAATTTATAAT+TGG | + | chr5.4:21278868-21278887 | MS.gene070865:intron | 15.0% |
| !! | ATTGTAAATCTTTATATTAC+TGG | + | chr5.4:21278301-21278320 | MS.gene070865:intron | 15.0% |
| !! | TGAAATATATATTCTATGAT+AGG | + | chr5.4:21281420-21281439 | MS.gene070865:intron | 15.0% |
| !!! | ATTTTCTTTAAATGATTTTC+AGG | + | chr5.4:21278495-21278514 | MS.gene070865:intron | 15.0% |
| !!! | TATGATATTATATTGATTGT+TGG | - | chr5.4:21280815-21280834 | None:intergenic | 15.0% |
| !!! | TTTTATTTTATCAGTGAAAT+TGG | - | chr5.4:21279956-21279975 | None:intergenic | 15.0% |
| !!! | TTTTGAATAATTTTGTTGAA+TGG | - | chr5.4:21278441-21278460 | None:intergenic | 15.0% |
| !! | AAGATCAATTTAAATCTCTA+TGG | + | chr5.4:21280142-21280161 | MS.gene070865:CDS | 20.0% |
| !! | AATTAAGTCCAAAATTGAAT+AGG | - | chr5.4:21278645-21278664 | None:intergenic | 20.0% |
| !! | AGAGTTGTTATATATAAAGA+AGG | + | chr5.4:21281350-21281369 | MS.gene070865:intron | 20.0% |
| !! | AGGTTTATATTATTAGTACA+TGG | + | chr5.4:21279602-21279621 | MS.gene070865:intron | 20.0% |
| !! | ATATATTCTATGATAGGTTT+AGG | + | chr5.4:21281426-21281445 | MS.gene070865:intron | 20.0% |
| !! | CATGCAAATAAATTTATGAA+TGG | + | chr5.4:21279647-21279666 | MS.gene070865:intron | 20.0% |
| !! | GAATTATATACAAATTCACA+GGG | + | chr5.4:21280628-21280647 | MS.gene070865:intron | 20.0% |
| !! | GAGAATATATTATCTTACAT+CGG | - | chr5.4:21282010-21282029 | None:intergenic | 20.0% |
| !! | GAGTTGTTATATATAAAGAA+GGG | + | chr5.4:21281351-21281370 | MS.gene070865:intron | 20.0% |
| !! | TAAACTTCAATTATATATGC+AGG | + | chr5.4:21281617-21281636 | MS.gene070865:intron | 20.0% |
| !! | TGAATTATATACAAATTCAC+AGG | + | chr5.4:21280627-21280646 | MS.gene070865:intron | 20.0% |
| !! | TTATAACAAGAGCTAATATT+TGG | - | chr5.4:21279320-21279339 | None:intergenic | 20.0% |
| !! | TTTCTTTACCATATTCATTA+GGG | + | chr5.4:21280458-21280477 | MS.gene070865:intron | 20.0% |
| !!! | AATAGGTTTATGCTTTTTTT+TGG | + | chr5.4:21279547-21279566 | MS.gene070865:intron | 20.0% |
| !!! | AATAGTTTGTTGTAATTAGT+TGG | + | chr5.4:21280922-21280941 | MS.gene070865:intron | 20.0% |
| !!! | AGACTTATAAAAAGGTTTTT+GGG | + | chr5.4:21280085-21280104 | MS.gene070865:CDS | 20.0% |
| !!! | ATAGGTTTATGCTTTTTTTT+GGG | + | chr5.4:21279548-21279567 | MS.gene070865:intron | 20.0% |
| !!! | ATATATTTCATTCGAGTTAA+TGG | - | chr5.4:21281410-21281429 | None:intergenic | 20.0% |
| !!! | ATTTATTTTCATACTTTACC+TGG | - | chr5.4:21280790-21280809 | None:intergenic | 20.0% |
| !!! | CGTCACTAATAATAATTTTT+TGG | - | chr5.4:21280844-21280863 | None:intergenic | 20.0% |
| !!! | CTATTAAAGTTGATCAAATA+AGG | + | chr5.4:21279207-21279226 | MS.gene070865:CDS | 20.0% |
| !!! | TATGCTTTGTTATTATTACT+AGG | + | chr5.4:21278723-21278742 | MS.gene070865:intron | 20.0% |
| ! | AACCAATACAATCAAGTTAA+TGG | + | chr5.4:21279716-21279735 | MS.gene070865:CDS | 25.0% |
| ! | AATACAATCAAGTTAATGGA+TGG | + | chr5.4:21279720-21279739 | MS.gene070865:CDS | 25.0% |
| ! | ACAAAGCATAATTATGTCAA+TGG | - | chr5.4:21278713-21278732 | None:intergenic | 25.0% |
| ! | ATATGGCAATATCAGATATT+AGG | + | chr5.4:21279408-21279427 | MS.gene070865:CDS | 25.0% |
| ! | ATATTACTGGAAAAATCCAA+CGG | + | chr5.4:21278314-21278333 | MS.gene070865:intron | 25.0% |
| ! | ATCAAATATAATCTTCCATG+TGG | - | chr5.4:21281671-21281690 | None:intergenic | 25.0% |
| ! | ATTTGATCAACTTTAATAGC+AGG | - | chr5.4:21279206-21279225 | None:intergenic | 25.0% |
| ! | CTGCAATGTAACAAATTTAA+AGG | - | chr5.4:21278378-21278397 | None:intergenic | 25.0% |
| ! | CTTTCTTTACCATATTCATT+AGG | + | chr5.4:21280457-21280476 | MS.gene070865:intron | 25.0% |
| ! | GAACGTCAACTATTTAATAA+TGG | - | chr5.4:21281258-21281277 | None:intergenic | 25.0% |
| ! | GAATTCAAGTAAACAAAGAT+AGG | - | chr5.4:21280111-21280130 | None:intergenic | 25.0% |
| ! | GAGGACTGAAAATATATTTA+GGG | - | chr5.4:21281802-21281821 | None:intergenic | 25.0% |
| ! | GGGAGTAAATAAATAAATCA+TGG | - | chr5.4:21280209-21280228 | None:intergenic | 25.0% |
| ! | GTGATTGCATACTAATAAAT+GGG | - | chr5.4:21280229-21280248 | None:intergenic | 25.0% |
| ! | TAAACAACCAATATAATCCA+TGG | - | chr5.4:21282162-21282181 | None:intergenic | 25.0% |
| ! | TATAGGTATATAGTGAGAAA+AGG | + | chr5.4:21279131-21279150 | MS.gene070865:intron | 25.0% |
| ! | TATTGGTAAAACTTTCTTTG+TGG | - | chr5.4:21281978-21281997 | None:intergenic | 25.0% |
| ! | TGGAAGATTATATTTGATCA+TGG | + | chr5.4:21281673-21281692 | MS.gene070865:CDS | 25.0% |
| ! | TGTGATTGCATACTAATAAA+TGG | - | chr5.4:21280230-21280249 | None:intergenic | 25.0% |
| ! | TGTTAATGAATATAAGCTTG+TGG | - | chr5.4:21278669-21278688 | None:intergenic | 25.0% |
| ! | TTACCTGGTTTAATTGTAAT+TGG | - | chr5.4:21280775-21280794 | None:intergenic | 25.0% |
| ! | TTATAAAAAACGTTGTACCT+GGG | + | chr5.4:21280692-21280711 | MS.gene070865:CDS | 25.0% |
| ! | TTCTTTACCATATTCATTAG+GGG | + | chr5.4:21280459-21280478 | MS.gene070865:intron | 25.0% |
| ! | TTGATTATGAACATGTTTCT+TGG | + | chr5.4:21279066-21279085 | MS.gene070865:intron | 25.0% |
| ! | TTTGATCAACTTTAATAGCA+GGG | - | chr5.4:21279205-21279224 | None:intergenic | 25.0% |
| !! | AATCAAGATTTGACTCATTT+TGG | + | chr5.4:21282239-21282258 | MS.gene070865:CDS | 25.0% |
| !! | ATCCATTAACTTGATTGTAT+TGG | - | chr5.4:21279721-21279740 | None:intergenic | 25.0% |
| !! | GAGACTTATAAAAAGGTTTT+TGG | + | chr5.4:21280084-21280103 | MS.gene070865:CDS | 25.0% |
| !! | TTATAACAAAGTTTCCGTTT+TGG | - | chr5.4:21280678-21280697 | None:intergenic | 25.0% |
| !!! | ATTTTTGATAGTTAGTTACC+TGG | - | chr5.4:21279255-21279274 | None:intergenic | 25.0% |
| !!! | TTCTTTAAATGATTTTCAGG+TGG | + | chr5.4:21278498-21278517 | MS.gene070865:intron | 25.0% |
| !!! | TTTTTGGCAAAACATTTCAA+AGG | + | chr5.4:21278759-21278778 | MS.gene070865:CDS | 25.0% |
| AAATCCTAGTCCCAATTATT+TGG | + | chr5.4:21279028-21279047 | MS.gene070865:intron | 30.0% | |
| AACTGCGATTAAAAAAGGAT+AGG | + | chr5.4:21278415-21278434 | MS.gene070865:intron | 30.0% | |
| AAGTTCAACACATCAAAGAT+GGG | + | chr5.4:21279865-21279884 | MS.gene070865:intron | 30.0% | |
| AATGCTAAGAATGCATACAT+TGG | + | chr5.4:21280495-21280514 | MS.gene070865:CDS | 30.0% | |
| ACAAACTGTGCCAAATAATT+GGG | - | chr5.4:21279041-21279060 | None:intergenic | 30.0% | |
| ACAATGACTTTGTAACAATG+TGG | + | chr5.4:21281049-21281068 | MS.gene070865:intron | 30.0% | |
| ACCTTTGGTCTATGTTTATA+GGG | - | chr5.4:21279007-21279026 | None:intergenic | 30.0% | |
| AGAAGGAGAGACTTATAAAA+AGG | + | chr5.4:21280077-21280096 | MS.gene070865:CDS | 30.0% | |
| AGATATTAGGCAAAGAAGAA+TGG | + | chr5.4:21279421-21279440 | MS.gene070865:CDS | 30.0% | |
| ATAAATTTCAAGCAACCACA+TGG | + | chr5.4:21281653-21281672 | MS.gene070865:CDS | 30.0% | |
| ATAATGGTTTAGAGACTAAC+TGG | - | chr5.4:21281242-21281261 | None:intergenic | 30.0% | |
| ATGGAAAATGTACTTGAATC+TGG | + | chr5.4:21278595-21278614 | MS.gene070865:CDS | 30.0% | |
| CATGAAAAACCAGAACTAAA+CGG | - | chr5.4:21279930-21279949 | None:intergenic | 30.0% | |
| CCATCTAATCCACAATTTAA+AGG | + | chr5.4:21279509-21279528 | MS.gene070865:CDS | 30.0% | |
| CGAGGACTGAAAATATATTT+AGG | - | chr5.4:21281803-21281822 | None:intergenic | 30.0% | |
| CTTCAAACTGCGATTAAAAA+AGG | + | chr5.4:21278410-21278429 | MS.gene070865:intron | 30.0% | |
| GAAATGAAGATGATGATAGA+GGG | + | chr5.4:21278617-21278636 | MS.gene070865:CDS | 30.0% | |
| GGAGAGGTAACAAAATAAAT+AGG | + | chr5.4:21279530-21279549 | MS.gene070865:intron | 30.0% | |
| GTAACAATGTGGATATATGT+AGG | + | chr5.4:21281060-21281079 | MS.gene070865:intron | 30.0% | |
| GTCTTAGGAATATCATATTC+TGG | + | chr5.4:21278571-21278590 | MS.gene070865:CDS | 30.0% | |
| GTTATAAAAAACGTTGTACC+TGG | + | chr5.4:21280691-21280710 | MS.gene070865:CDS | 30.0% | |
| TAAGTTCAACACATCAAAGA+TGG | + | chr5.4:21279864-21279883 | MS.gene070865:intron | 30.0% | |
| TAATCCACAATTTAAAGGAG+AGG | + | chr5.4:21279514-21279533 | MS.gene070865:CDS | 30.0% | |
| TACATCGGTGAATACTTTAT+TGG | - | chr5.4:21281995-21282014 | None:intergenic | 30.0% | |
| TACTTCACAACAAAGAGAAT+AGG | + | chr5.4:21282106-21282125 | MS.gene070865:CDS | 30.0% | |
| TATATATAAAGAAGGGACAG+AGG | + | chr5.4:21281358-21281377 | MS.gene070865:intron | 30.0% | |
| TATGATAGGTTTAGGCAATA+TGG | + | chr5.4:21281434-21281453 | MS.gene070865:intron | 30.0% | |
| TCAATGAAAGATAGAGATGA+CGG | + | chr5.4:21279446-21279465 | MS.gene070865:CDS | 30.0% | |
| TCTCCAATTACAATTAAACC+AGG | + | chr5.4:21280769-21280788 | MS.gene070865:CDS | 30.0% | |
| TCTTTACCATATTCATTAGG+GGG | + | chr5.4:21280460-21280479 | MS.gene070865:intron | 30.0% | |
| TTAGTAACTATCGAAAGGAT+TGG | + | chr5.4:21281516-21281535 | MS.gene070865:CDS | 30.0% | |
| TTGGATATAAATCGCTGTAA+CGG | - | chr5.4:21281469-21281488 | None:intergenic | 30.0% | |
| ! | AATACGGTAGTTATTGCTTT+TGG | + | chr5.4:21281824-21281843 | MS.gene070865:intron | 30.0% |
| ! | AGGAATATCATATTCTGGAA+TGG | + | chr5.4:21278576-21278595 | MS.gene070865:CDS | 30.0% |
| ! | ATGGAATCCATGGATTATAT+TGG | + | chr5.4:21282152-21282171 | MS.gene070865:CDS | 30.0% |
| ! | ATTCTCTTTGTTGTGAAGTA+GGG | - | chr5.4:21282106-21282125 | None:intergenic | 30.0% |
| ! | CTCTTTTGCGCTAAAAAAAT+AGG | - | chr5.4:21281334-21281353 | None:intergenic | 30.0% |
| ! | CTTGTTTAAGTGTCATGTTT+TGG | + | chr5.4:21281592-21281611 | MS.gene070865:intron | 30.0% |
| ! | TATTCTCTTTGTTGTGAAGT+AGG | - | chr5.4:21282107-21282126 | None:intergenic | 30.0% |
| ! | TATTTTCAGTCCTCGAAATA+CGG | + | chr5.4:21281808-21281827 | MS.gene070865:intron | 30.0% |
| ! | TTTTATAAGTCTCTCCTTCT+TGG | - | chr5.4:21280077-21280096 | None:intergenic | 30.0% |
| !! | AGTGGAGGTTTCATTTTTAA+GGG | + | chr5.4:21278950-21278969 | MS.gene070865:CDS | 30.0% |
| !! | CCTTTAAATTGTGGATTAGA+TGG | - | chr5.4:21279512-21279531 | None:intergenic | 30.0% |
| !! | CTCAATTTGGTGCTATTAAT+AGG | + | chr5.4:21279582-21279601 | MS.gene070865:intron | 30.0% |
| !! | TAGTGGAGGTTTCATTTTTA+AGG | + | chr5.4:21278949-21278968 | MS.gene070865:CDS | 30.0% |
| AACACAGAACGAGAATATAG+TGG | + | chr5.4:21278932-21278951 | MS.gene070865:CDS | 35.0% | |
| AGATGTGAGATCTTGCTTAA+CGG | - | chr5.4:21279819-21279838 | None:intergenic | 35.0% | |
| ATGAACACTAGGTACTTCTA+TGG | - | chr5.4:21282185-21282204 | None:intergenic | 35.0% | |
| ATGGACAGATGCTAAACAAA+AGG | + | chr5.4:21280161-21280180 | MS.gene070865:CDS | 35.0% | |
| ATTGCGTCTCTAATAAAGTC+AGG | + | chr5.4:21280963-21280982 | MS.gene070865:intron | 35.0% | |
| CAACAGAAAGCTAATTACCT+TGG | - | chr5.4:21281557-21281576 | None:intergenic | 35.0% | |
| CACAAACTGTGCCAAATAAT+TGG | - | chr5.4:21279042-21279061 | None:intergenic | 35.0% | |
| CACCTTTGGTCTATGTTTAT+AGG | - | chr5.4:21279008-21279027 | None:intergenic | 35.0% | |
| CTTTACCATATTCATTAGGG+GGG | + | chr5.4:21280461-21280480 | MS.gene070865:intron | 35.0% | |
| GAATGGTTTATGTTGCACTT+AGG | + | chr5.4:21279664-21279683 | MS.gene070865:intron | 35.0% | |
| GGAAATGAAGATGATGATAG+AGG | + | chr5.4:21278616-21278635 | MS.gene070865:CDS | 35.0% | |
| GGTTTCAACTTTGTAGTTGA+AGG | - | chr5.4:21282301-21282320 | None:intergenic | 35.0% | |
| GTATATAAGCCTCCAAGAAA+TGG | + | chr5.4:21281108-21281127 | MS.gene070865:CDS | 35.0% | |
| GTTACCTCTCCTTTAAATTG+TGG | - | chr5.4:21279521-21279540 | None:intergenic | 35.0% | |
| TAGTTGAAGGACTTTCTAAG+CGG | - | chr5.4:21282288-21282307 | None:intergenic | 35.0% | |
| TCCCTATAAACATAGACCAA+AGG | + | chr5.4:21279003-21279022 | MS.gene070865:CDS | 35.0% | |
| TGTTATGATCCAAAAACCCA+CGG | - | chr5.4:21279768-21279787 | None:intergenic | 35.0% | |
| TTTACCATATTCATTAGGGG+GGG | + | chr5.4:21280462-21280481 | MS.gene070865:intron | 35.0% | |
| ! | AATTATATATGCAGGAGCAC+AGG | + | chr5.4:21281625-21281644 | MS.gene070865:intron | 35.0% |
| ! | ATTCACAGGGCTATCAATTT+TGG | + | chr5.4:21280641-21280660 | MS.gene070865:intron | 35.0% |
| ! | GTTTTGTATGATGTGTGATC+AGG | + | chr5.4:21282051-21282070 | MS.gene070865:intron | 35.0% |
| ! | TAGAGATGACGGTCAAAAAT+TGG | + | chr5.4:21279457-21279476 | MS.gene070865:CDS | 35.0% |
| ! | TATCGACTGAACTCAAAAGT+TGG | + | chr5.4:21280282-21280301 | MS.gene070865:CDS | 35.0% |
| ! | TGGTGTTAGTAACTATCGAA+AGG | + | chr5.4:21281511-21281530 | MS.gene070865:CDS | 35.0% |
| ! | TTAATAGCAGGGAATCCTTT+TGG | - | chr5.4:21279194-21279213 | None:intergenic | 35.0% |
| ! | TTCTGGATTTTACACTTACG+TGG | + | chr5.4:21279157-21279176 | MS.gene070865:CDS | 35.0% |
| !! | AGAAGTACCTAGTGTTCATT+TGG | + | chr5.4:21282186-21282205 | MS.gene070865:CDS | 35.0% |
| !! | AGATTTGACTCATTTTGGCA+AGG | + | chr5.4:21282244-21282263 | MS.gene070865:CDS | 35.0% |
| !! | AGGTACTTTGACGTTGTTTT+TGG | + | chr5.4:21278743-21278762 | MS.gene070865:intron | 35.0% |
| !! | AGGTTTCATTTTTAAGGGCA+TGG | + | chr5.4:21278955-21278974 | MS.gene070865:CDS | 35.0% |
| !! | GGTGTCATTTCTACTCAATT+TGG | + | chr5.4:21279569-21279588 | MS.gene070865:intron | 35.0% |
| !! | TACGAGTGAATTCAAGTTGA+TGG | - | chr5.4:21281091-21281110 | None:intergenic | 35.0% |
| !! | TTGATTGTATTGGTTCTCAG+TGG | - | chr5.4:21279711-21279730 | None:intergenic | 35.0% |
| !!! | AAGGACTGTTTTTAAACCCA+AGG | + | chr5.4:21279226-21279245 | MS.gene070865:CDS | 35.0% |
| !!! | AGAGGGTACCTATTCAATTT+TGG | + | chr5.4:21278634-21278653 | MS.gene070865:intron | 35.0% |
| AACTTACAGAGAGGCAAGTT+GGG | - | chr5.4:21279850-21279869 | None:intergenic | 40.0% | |
| AAGAAATGGCCCAACTGTTT+GGG | + | chr5.4:21281122-21281141 | MS.gene070865:CDS | 40.0% | |
| AAGTCTCTCCTTCTTGGAAT+TGG | - | chr5.4:21280071-21280090 | None:intergenic | 40.0% | |
| AATTACCATTGCAGAGTCCA+TGG | + | chr5.4:21278891-21278910 | MS.gene070865:intron | 40.0% | |
| ACAGAACGAGAATATAGTGG+AGG | + | chr5.4:21278935-21278954 | MS.gene070865:CDS | 40.0% | |
| ACTGACAAGCATCATAGAGA+GGG | - | chr5.4:21281913-21281932 | None:intergenic | 40.0% | |
| ATAGTGAGAAAAGGCGATTC+TGG | + | chr5.4:21279140-21279159 | MS.gene070865:CDS | 40.0% | |
| ATATAAAGAAGGGACAGAGG+TGG | + | chr5.4:21281361-21281380 | MS.gene070865:intron | 40.0% | |
| ATGCCAATTTCCCAAACAGT+TGG | - | chr5.4:21281135-21281154 | None:intergenic | 40.0% | |
| CAAGATCTCACATCTCATGT+TGG | + | chr5.4:21279824-21279843 | MS.gene070865:CDS | 40.0% | |
| CAGCGATTTATATCCAACTC+AGG | + | chr5.4:21281472-21281491 | MS.gene070865:CDS | 40.0% | |
| GACATTTACAAGTCCAAGAC+GGG | + | chr5.4:21280366-21280385 | MS.gene070865:CDS | 40.0% | |
| GACTTGTAAATGTCCGGTTA+GGG | - | chr5.4:21280360-21280379 | None:intergenic | 40.0% | |
| GATGTGAGATCTTGCTTAAC+GGG | - | chr5.4:21279818-21279837 | None:intergenic | 40.0% | |
| GATGTGTTGAACTTACAGAG+AGG | - | chr5.4:21279859-21279878 | None:intergenic | 40.0% | |
| GCAATAACTACCGTATTTCG+AGG | - | chr5.4:21281821-21281840 | None:intergenic | 40.0% | |
| GGACAGAGATAGTAGAAACT+GGG | - | chr5.4:21281300-21281319 | None:intergenic | 40.0% | |
| GGACATTTACAAGTCCAAGA+CGG | + | chr5.4:21280365-21280384 | MS.gene070865:CDS | 40.0% | |
| GGTTTAGGCAATATGGTCTA+TGG | + | chr5.4:21281441-21281460 | MS.gene070865:intron | 40.0% | |
| GTATGATGTGTGATCAGGTT+TGG | + | chr5.4:21282056-21282075 | MS.gene070865:intron | 40.0% | |
| GTCAGTCATGTATCTCTATG+TGG | + | chr5.4:21281927-21281946 | MS.gene070865:intron | 40.0% | |
| GTCTTGGACTTGTAAATGTC+CGG | - | chr5.4:21280366-21280385 | None:intergenic | 40.0% | |
| GTGGTATTTGAACGACCAAA+AGG | + | chr5.4:21279176-21279195 | MS.gene070865:CDS | 40.0% | |
| GTGTAAACAAGATCCTGAGT+TGG | - | chr5.4:21281488-21281507 | None:intergenic | 40.0% | |
| GTTATGATCCAAAAACCCAC+GGG | - | chr5.4:21279767-21279786 | None:intergenic | 40.0% | |
| TCGTGAATAATCTGTTCACG+AGG | - | chr5.4:21281206-21281225 | None:intergenic | 40.0% | |
| TCGTTAATGTATACCCGTCT+TGG | - | chr5.4:21280382-21280401 | None:intergenic | 40.0% | |
| TGCATGCAGCTTCAACTATA+TGG | + | chr5.4:21279391-21279410 | MS.gene070865:intron | 40.0% | |
| TGCCAATTTCCCAAACAGTT+GGG | - | chr5.4:21281134-21281153 | None:intergenic | 40.0% | |
| TGGTTTATGTTGCACTTAGG+TGG | + | chr5.4:21279667-21279686 | MS.gene070865:intron | 40.0% | |
| TGTGCCAAATAATTGGGACT+AGG | - | chr5.4:21279035-21279054 | None:intergenic | 40.0% | |
| TGTGTTAAGAGAACAGCTTC+AGG | - | chr5.4:21279488-21279507 | None:intergenic | 40.0% | |
| TTCATTCCACCTAATCAACG+TGG | + | chr5.4:21280332-21280351 | MS.gene070865:CDS | 40.0% | |
| TTGTAATCTCCAATGTAGCC+AGG | - | chr5.4:21280742-21280761 | None:intergenic | 40.0% | |
| ! | ACATATCGTCCGTTTAGTTC+TGG | + | chr5.4:21279918-21279937 | MS.gene070865:intron | 40.0% |
| ! | ATGCATACATTGGTCTAGCT+TGG | + | chr5.4:21280505-21280524 | MS.gene070865:CDS | 40.0% |
| ! | CAGGATCTTGTTTACACAGT+TGG | + | chr5.4:21281491-21281510 | MS.gene070865:CDS | 40.0% |
| ! | GTCGTACAACTTGTTTGCAT+GGG | + | chr5.4:21280714-21280733 | MS.gene070865:CDS | 40.0% |
| ! | GTTTAGAGACTAACTGGTCT+GGG | - | chr5.4:21281236-21281255 | None:intergenic | 40.0% |
| ! | TTTCAGGTGGTGATTAGCAA+TGG | + | chr5.4:21278511-21278530 | MS.gene070865:intron | 40.0% |
| ! | TTTTTAAACCCAAGGAAGCC+AGG | + | chr5.4:21279234-21279253 | MS.gene070865:CDS | 40.0% |
| !! | GATCATGGTGCTGTAATAAG+TGG | + | chr5.4:21281688-21281707 | MS.gene070865:CDS | 40.0% |
| !! | GGTTTTATGCTCATGTTCCA+AGG | + | chr5.4:21281537-21281556 | MS.gene070865:CDS | 40.0% |
| AATCAACGTGGAACCCTAAC+CGG | + | chr5.4:21280344-21280363 | MS.gene070865:CDS | 45.0% | |
| AATCCATGGATTCCATGCCT+TGG | - | chr5.4:21282148-21282167 | None:intergenic | 45.0% | |
| AGGGCATGGAGTTCTTCTAT+GGG | + | chr5.4:21278969-21278988 | MS.gene070865:CDS | 45.0% | |
| AGTAATGAGTTCCGCAATGG+TGG | + | chr5.4:21279791-21279810 | MS.gene070865:CDS | 45.0% | |
| AGTTAGTTACCTGGCTTCCT+TGG | - | chr5.4:21279246-21279265 | None:intergenic | 45.0% | |
| ATACCAAGGCATGGAATCCA+TGG | + | chr5.4:21282142-21282161 | MS.gene070865:CDS | 45.0% | |
| ATCATGGCAGAGAGAAAGCA+AGG | + | chr5.4:21280542-21280561 | MS.gene070865:CDS | 45.0% | |
| ATGGATTCCATGCCTTGGTA+TGG | - | chr5.4:21282143-21282162 | None:intergenic | 45.0% | |
| CAAACAGTTGGGCCATTTCT+TGG | - | chr5.4:21281123-21281142 | None:intergenic | 45.0% | |
| CAAGAAATGGCCCAACTGTT+TGG | + | chr5.4:21281121-21281140 | MS.gene070865:CDS | 45.0% | |
| CCATTGCGGAACTCATTACT+CGG | - | chr5.4:21279791-21279810 | None:intergenic | 45.0% | |
| CCCAGGATTTGCCAAAGTAA+GGG | - | chr5.4:21278545-21278564 | None:intergenic | 45.0% | |
| CCCTTACTTTGGCAAATCCT+GGG | + | chr5.4:21278542-21278561 | MS.gene070865:CDS | 45.0% | |
| CCTTACTTTGGCAAATCCTG+GGG | + | chr5.4:21278543-21278562 | MS.gene070865:CDS | 45.0% | |
| CTCTCCTTCTTGGAATTGGA+TGG | - | chr5.4:21280067-21280086 | None:intergenic | 45.0% | |
| CTTACTTTGGCAAATCCTGG+GGG | + | chr5.4:21278544-21278563 | MS.gene070865:CDS | 45.0% | |
| GAACTTACAGAGAGGCAAGT+TGG | - | chr5.4:21279851-21279870 | None:intergenic | 45.0% | |
| GACTGACAAGCATCATAGAG+AGG | - | chr5.4:21281914-21281933 | None:intergenic | 45.0% | |
| GGACTTGTAAATGTCCGGTT+AGG | - | chr5.4:21280361-21280380 | None:intergenic | 45.0% | |
| GGGACAGAGATAGTAGAAAC+TGG | - | chr5.4:21281301-21281320 | None:intergenic | 45.0% | |
| GGTTTAGAGACTAACTGGTC+TGG | - | chr5.4:21281237-21281256 | None:intergenic | 45.0% | |
| GTAGCCATCCAATTCCAAGA+AGG | + | chr5.4:21280060-21280079 | MS.gene070865:CDS | 45.0% | |
| GTTAGTTACCTGGCTTCCTT+GGG | - | chr5.4:21279245-21279264 | None:intergenic | 45.0% | |
| GTTGAAGCTGCATGCATCAT+TGG | - | chr5.4:21279387-21279406 | None:intergenic | 45.0% | |
| TACCTGCACTTCAGCATTAG+AGG | - | chr5.4:21281746-21281765 | None:intergenic | 45.0% | |
| TACGTCTTTGCCAGCATAGT+GGG | - | chr5.4:21280043-21280062 | None:intergenic | 45.0% | |
| TCCCTTACTTTGGCAAATCC+TGG | + | chr5.4:21278541-21278560 | MS.gene070865:CDS | 45.0% | |
| TGGCATCATGTCCCTTACTT+TGG | + | chr5.4:21278531-21278550 | MS.gene070865:CDS | 45.0% | |
| TGGGACTAGGATTTCACCTT+TGG | - | chr5.4:21279022-21279041 | None:intergenic | 45.0% | |
| TGTTGTGAAGTAGGGAGGAT+TGG | - | chr5.4:21282098-21282117 | None:intergenic | 45.0% | |
| TTACTTTGGCAAATCCTGGG+GGG | + | chr5.4:21278545-21278564 | MS.gene070865:CDS | 45.0% | |
| TTGTTCCATGGACTCTGCAA+TGG | - | chr5.4:21278899-21278918 | None:intergenic | 45.0% | |
| TTTGCCCCCCCTAATGAATA+TGG | - | chr5.4:21280469-21280488 | None:intergenic | 45.0% | |
| TTTGTAAGCACCCACTATGC+TGG | + | chr5.4:21280030-21280049 | MS.gene070865:CDS | 45.0% | |
| ! | AACTTGTTTGCATGGGTTCC+TGG | + | chr5.4:21280721-21280740 | MS.gene070865:CDS | 45.0% |
| ! | AAGGGCATGGAGTTCTTCTA+TGG | + | chr5.4:21278968-21278987 | MS.gene070865:CDS | 45.0% |
| ! | CGACTGAGAAACTTGTTCCA+TGG | - | chr5.4:21278911-21278930 | None:intergenic | 45.0% |
| ! | CTCTTTGTTGTGAAGTAGGG+AGG | - | chr5.4:21282103-21282122 | None:intergenic | 45.0% |
| ! | CTGAAAAACCCGTGGGTTTT+TGG | + | chr5.4:21279756-21279775 | MS.gene070865:CDS | 45.0% |
| ! | GAGATGATAGTGCCATACCA+AGG | + | chr5.4:21282128-21282147 | MS.gene070865:CDS | 45.0% |
| ! | GCAGATTCTGAAAAACCCGT+GGG | + | chr5.4:21279749-21279768 | MS.gene070865:CDS | 45.0% |
| ! | GGTCGTACAACTTGTTTGCA+TGG | + | chr5.4:21280713-21280732 | MS.gene070865:CDS | 45.0% |
| ! | GTTAGGGTTCCACGTTGATT+AGG | - | chr5.4:21280344-21280363 | None:intergenic | 45.0% |
| ! | TGGACTAGAGCAGACCAAAA+CGG | + | chr5.4:21280661-21280680 | MS.gene070865:CDS | 45.0% |
| !! | AGCATTAGAGGCACTTGCTA+GGG | - | chr5.4:21281734-21281753 | None:intergenic | 45.0% |
| !! | CACGGGTTTTTCAGAATCTG+CGG | - | chr5.4:21279750-21279769 | None:intergenic | 45.0% |
| !!! | TTGAATAAATATATTTTTAT+AGG | + | chr5.4:21279114-21279133 | MS.gene070865:intron | 5.0% |
| AATTCTCCAGCTGAGCGATC+TGG | - | chr5.4:21281159-21281178 | None:intergenic | 50.0% | |
| ACAGTTGGGCCATTTCTTGG+AGG | - | chr5.4:21281120-21281139 | None:intergenic | 50.0% | |
| ACGAGGTTAGCGTAAGGCTT+TGG | - | chr5.4:21281189-21281208 | None:intergenic | 50.0% | |
| ATTCCTAAGACATACCCCCC+AGG | - | chr5.4:21278562-21278581 | None:intergenic | 50.0% | |
| CCCCAGGATTTGCCAAAGTA+AGG | - | chr5.4:21278546-21278565 | None:intergenic | 50.0% | |
| CCGAGTAATGAGTTCCGCAA+TGG | + | chr5.4:21279788-21279807 | MS.gene070865:CDS | 50.0% | |
| CTACGTCTTTGCCAGCATAG+TGG | - | chr5.4:21280044-21280063 | None:intergenic | 50.0% | |
| CTGTTCACGAGGTTAGCGTA+AGG | - | chr5.4:21281195-21281214 | None:intergenic | 50.0% | |
| GATAGTGCCATACCAAGGCA+TGG | + | chr5.4:21282133-21282152 | MS.gene070865:CDS | 50.0% | |
| GCAAACAAGTTGTACGACCC+AGG | - | chr5.4:21280712-21280731 | None:intergenic | 50.0% | |
| GGCCCAACTGTTTGGGAAAT+TGG | + | chr5.4:21281129-21281148 | MS.gene070865:CDS | 50.0% | |
| TGCCTCTAATGCTGAAGTGC+AGG | + | chr5.4:21281741-21281760 | MS.gene070865:CDS | 50.0% | |
| ! | AATCCTGGGGGGTATGTCTT+AGG | + | chr5.4:21278556-21278575 | MS.gene070865:CDS | 50.0% |
| ! | ACATTGGTCTAGCTTGGCCT+GGG | + | chr5.4:21280511-21280530 | MS.gene070865:CDS | 50.0% |
| ! | AGGGTTCCACGTTGATTAGG+TGG | - | chr5.4:21280341-21280360 | None:intergenic | 50.0% |
| ! | CGCAGATTCTGAAAAACCCG+TGG | + | chr5.4:21279748-21279767 | MS.gene070865:CDS | 50.0% |
| ! | TACATTGGTCTAGCTTGGCC+TGG | + | chr5.4:21280510-21280529 | MS.gene070865:CDS | 50.0% |
| !! | CAGCATTAGAGGCACTTGCT+AGG | - | chr5.4:21281735-21281754 | None:intergenic | 50.0% |
| GCATGGGTTCCTGGCTACAT+TGG | + | chr5.4:21280730-21280749 | MS.gene070865:CDS | 55.0% | |
| GCGATTGCGATCATGTCCGT+TGG | - | chr5.4:21278333-21278352 | None:intergenic | 55.0% | |
| ! | CATTGGTCTAGCTTGGCCTG+GGG | + | chr5.4:21280512-21280531 | MS.gene070865:CDS | 55.0% |
| ! | GCTTAACGGGTCCACCATTG+CGG | - | chr5.4:21279805-21279824 | None:intergenic | 55.0% |
| GGCATTCCAGATCGCTCAGC+TGG | + | chr5.4:21281150-21281169 | MS.gene070865:CDS | 60.0% | |
| TGCCATGATCCTGCATCCCC+AGG | - | chr5.4:21280531-21280550 | None:intergenic | 60.0% | |
| CTAGCTTGGCCTGGGGATGC+AGG | + | chr5.4:21280519-21280538 | MS.gene070865:CDS | 65.0% | |
| GGCCTGGGGATGCAGGATCA+TGG | + | chr5.4:21280526-21280545 | MS.gene070865:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 21278211 | 21282324 | 21278211 | ID=MS.gene070865 |
| chr5.4 | mRNA | 21278211 | 21282324 | 21278211 | ID=MS.gene070865.t1;Parent=MS.gene070865 |
| chr5.4 | exon | 21278211 | 21278219 | 21278211 | ID=MS.gene070865.t1.exon1;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21278211 | 21278219 | 21278211 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21278517 | 21278638 | 21278517 | ID=MS.gene070865.t1.exon2;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21278517 | 21278638 | 21278517 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21278745 | 21278780 | 21278745 | ID=MS.gene070865.t1.exon3;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21278745 | 21278780 | 21278745 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21278905 | 21279024 | 21278905 | ID=MS.gene070865.t1.exon4;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21278905 | 21279024 | 21278905 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21279136 | 21279255 | 21279136 | ID=MS.gene070865.t1.exon5;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21279136 | 21279255 | 21279136 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21279400 | 21279535 | 21279400 | ID=MS.gene070865.t1.exon6;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21279400 | 21279535 | 21279400 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21279686 | 21279862 | 21279686 | ID=MS.gene070865.t1.exon7;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21279686 | 21279862 | 21279686 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21280027 | 21280182 | 21280027 | ID=MS.gene070865.t1.exon8;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21280027 | 21280182 | 21280027 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21280281 | 21280387 | 21280281 | ID=MS.gene070865.t1.exon9;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21280281 | 21280387 | 21280281 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21280479 | 21280563 | 21280479 | ID=MS.gene070865.t1.exon10;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21280479 | 21280563 | 21280479 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21280649 | 21280790 | 21280649 | ID=MS.gene070865.t1.exon11;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21280649 | 21280790 | 21280649 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21281082 | 21281241 | 21281082 | ID=MS.gene070865.t1.exon12;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21281082 | 21281241 | 21281082 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21281442 | 21281558 | 21281442 | ID=MS.gene070865.t1.exon13;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21281442 | 21281558 | 21281442 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21281639 | 21281762 | 21281639 | ID=MS.gene070865.t1.exon14;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21281639 | 21281762 | 21281639 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| chr5.4 | exon | 21282073 | 21282324 | 21282073 | ID=MS.gene070865.t1.exon15;Parent=MS.gene070865.t1 |
| chr5.4 | CDS | 21282073 | 21282324 | 21282073 | ID=cds.MS.gene070865.t1;Parent=MS.gene070865.t1 |
| Gene Sequence |
| Protein sequence |
