Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071006.t1 | XP_003604116.1 | 97.4 | 228 | 6 | 0 | 1 | 228 | 68 | 295 | 9.50E-128 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071006.t1 | G7JUF2 | 97.4 | 228 | 6 | 0 | 1 | 228 | 68 | 295 | 6.8e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene071006 | 0.813189 | 2.90E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene071006 | 0.809679 | 1.68E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene071006 | 0.823808 | 1.13E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTAGGTTTGCAGGATT+TGG | 0.251778 | 4.3:-89694036 | None:intergenic |
| ATCAGTAACCTTAGGTTTGC+AGG | 0.256518 | 4.3:-89694042 | None:intergenic |
| ATCTAAATGAGAATGCTAAA+TGG | 0.314684 | 4.3:+89693970 | MS.gene071006:CDS |
| GACCGTGTTCAATAATATTT+CGG | 0.348371 | 4.3:+89695151 | MS.gene071006:CDS |
| CTAGAGAATACGTGCTAACT+TGG | 0.350444 | 4.3:+89695318 | MS.gene071006:CDS |
| TTCAGTCAATTTAATGCAAA+AGG | 0.385709 | 4.3:+89696403 | MS.gene071006:CDS |
| TTAGGAATGTGAACATACTT+TGG | 0.398158 | 4.3:+89695839 | MS.gene071006:intron |
| GACTGAACTGTTAACTGAAC+TGG | 0.403147 | 4.3:-89696387 | None:intergenic |
| GAATGTGGAGATGGCAAAAC+TGG | 0.403229 | 4.3:+89696283 | MS.gene071006:CDS |
| TCTAAATGAGAATGCTAAAT+GGG | 0.425962 | 4.3:+89693971 | MS.gene071006:CDS |
| TTGGAAATTGTGGGAGGGGA+AGG | 0.429664 | 4.3:+89695337 | MS.gene071006:CDS |
| TACATAGCTCCATATGCCTT+TGG | 0.455824 | 4.3:-89696312 | None:intergenic |
| ACGTGCTAACTTGGAAATTG+TGG | 0.456235 | 4.3:+89695327 | MS.gene071006:CDS |
| CAAGTTAGCACGTATTCTCT+AGG | 0.463689 | 4.3:-89695317 | None:intergenic |
| AAATCTGATGGTTCTGAAGT+TGG | 0.471935 | 4.3:+89695263 | MS.gene071006:CDS |
| TATTCTCTAGGTTTCAAAAG+AGG | 0.479731 | 4.3:-89695305 | None:intergenic |
| CGTGCTAACTTGGAAATTGT+GGG | 0.500606 | 4.3:+89695328 | MS.gene071006:CDS |
| CAATGACTACAGAAAACAAT+GGG | 0.504178 | 4.3:+89695202 | MS.gene071006:CDS |
| CACGGCAGAATAAATATGTA+CGG | 0.508876 | 4.3:+89695865 | MS.gene071006:CDS |
| ATGTTTCATCAAGAAGATGC+TGG | 0.515286 | 4.3:+89696257 | MS.gene071006:CDS |
| TAACTTGGAAATTGTGGGAG+GGG | 0.526844 | 4.3:+89695333 | MS.gene071006:CDS |
| ATTCTCTAGGTTTCAAAAGA+GGG | 0.532340 | 4.3:-89695304 | None:intergenic |
| TGCCAAATCCTGCAAACCTA+AGG | 0.543122 | 4.3:+89694034 | MS.gene071006:CDS |
| GAAGATACTCTGCTGCAAGC+TGG | 0.548902 | 4.3:+89696357 | MS.gene071006:CDS |
| ATCTCACAGGCATTTCTACC+AGG | 0.552255 | 4.3:-89696230 | None:intergenic |
| GGTTGAGCACAATCAACTGC+AGG | 0.572742 | 4.3:+89695235 | MS.gene071006:CDS |
| ATGAAACATTGTGATCTCAC+AGG | 0.577864 | 4.3:-89696243 | None:intergenic |
| CTGCAGGTGGACAAATCTGA+TGG | 0.593077 | 4.3:+89695251 | MS.gene071006:CDS |
| ACGGCAGAATAAATATGTAC+GGG | 0.595469 | 4.3:+89695866 | MS.gene071006:CDS |
| CGTACATATTTATTCTGCCG+TGG | 0.595658 | 4.3:-89695864 | None:intergenic |
| ATGGAGCTATGTATGCAAGA+TGG | 0.597778 | 4.3:+89696322 | MS.gene071006:CDS |
| GTGAACATACTTTGGCTCCA+CGG | 0.602406 | 4.3:+89695847 | MS.gene071006:CDS |
| CTAACTTGGAAATTGTGGGA+GGG | 0.610138 | 4.3:+89695332 | MS.gene071006:CDS |
| GTCACACTCAAATATCTCAA+GGG | 0.610413 | 4.3:-89695131 | None:intergenic |
| TGCTGGTTTGAATGTGGAGA+TGG | 0.613421 | 4.3:+89696274 | MS.gene071006:CDS |
| GGTCACACTCAAATATCTCA+AGG | 0.625085 | 4.3:-89695132 | None:intergenic |
| AGAAGATGCTGGTTTGAATG+TGG | 0.629014 | 4.3:+89696268 | MS.gene071006:CDS |
| TTCATTTGTCACAATCTCCG+AGG | 0.636784 | 4.3:-89693913 | None:intergenic |
| TGAGCACAATCAACTGCAGG+TGG | 0.636879 | 4.3:+89695238 | MS.gene071006:CDS |
| TGTCATCAATTGCAGAACCT+CGG | 0.647597 | 4.3:+89693896 | None:intergenic |
| GATGCTAAGAAACTTCTACA+TGG | 0.648028 | 4.3:+89695178 | MS.gene071006:CDS |
| TCACACTCAAATATCTCAAG+GGG | 0.652492 | 4.3:-89695130 | None:intergenic |
| GCTAACTTGGAAATTGTGGG+AGG | 0.653551 | 4.3:+89695331 | MS.gene071006:CDS |
| ACAATGACTACAGAAAACAA+TGG | 0.653588 | 4.3:+89695201 | MS.gene071006:CDS |
| AGCCGAAATATTATTGAACA+CGG | 0.666524 | 4.3:-89695153 | None:intergenic |
| TCTGGCTGGCGAATAAGACA+AGG | 0.684761 | 4.3:+89695903 | MS.gene071006:CDS |
| AAAACAATGGGATAAGACAG+TGG | 0.709971 | 4.3:+89695214 | MS.gene071006:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTTATAAATTAAA+TGG | + | chr4.3:89694710-89694729 | MS.gene071006:intron | 0.0% |
| !!! | TATAATTAGTTATATGTTTT+AGG | + | chr4.3:89694989-89695008 | MS.gene071006:intron | 10.0% |
| !!! | TGTAATTTTAAATTTGAATT+TGG | + | chr4.3:89695046-89695065 | MS.gene071006:intron | 10.0% |
| !! | ACAACGAAATATAAATAAAA+AGG | - | chr4.3:89696142-89696161 | None:intergenic | 15.0% |
| !! | GACATTATTATAATTTATCA+TGG | + | chr4.3:89694087-89694106 | MS.gene071006:intron | 15.0% |
| !!! | AACATTTTACTGTTATATAA+AGG | + | chr4.3:89695364-89695383 | MS.gene071006:CDS | 15.0% |
| !!! | AATTTTTTTCTTTTCATCTT+TGG | + | chr4.3:89695806-89695825 | MS.gene071006:intron | 15.0% |
| !!! | ATTAGAAACAATATTTTAAC+TGG | + | chr4.3:89694849-89694868 | MS.gene071006:intron | 15.0% |
| !!! | ATTTATATTTTTCCTTAACT+TGG | - | chr4.3:89694347-89694366 | None:intergenic | 15.0% |
| !! | ATATTCCCATAAAAAATTCA+CGG | - | chr4.3:89695956-89695975 | None:intergenic | 20.0% |
| !! | CATTTCAAGAATGATATTAA+AGG | - | chr4.3:89694645-89694664 | None:intergenic | 20.0% |
| !! | GGAGTTTAAATTTAATTCTT+TGG | + | chr4.3:89695010-89695029 | MS.gene071006:intron | 20.0% |
| !! | TTATATAAAGGTAATACATC+CGG | + | chr4.3:89695376-89695395 | MS.gene071006:intron | 20.0% |
| !! | TTCTTGATCAATATATTTCT+AGG | - | chr4.3:89695580-89695599 | None:intergenic | 20.0% |
| !!! | AAATGGAAGATATTTTTTGT+TGG | + | chr4.3:89694727-89694746 | MS.gene071006:intron | 20.0% |
| !!! | ATTTAAAATTACATGCTTGA+AGG | - | chr4.3:89695039-89695058 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAATAAACATGTT+TGG | - | chr4.3:89694912-89694931 | None:intergenic | 20.0% |
| !!! | GAAGTTTTTAATGATGATTT+TGG | + | chr4.3:89693941-89693960 | MS.gene071006:CDS | 20.0% |
| !!! | TTTTTAATGATGATTTTGGA+TGG | + | chr4.3:89693945-89693964 | MS.gene071006:CDS | 20.0% |
| !!! | TTTTTCCGTGAATTTTTTAT+GGG | + | chr4.3:89695948-89695967 | MS.gene071006:intron | 20.0% |
| ! | AAAATTTGAATGAACTATGC+TGG | + | chr4.3:89694616-89694635 | MS.gene071006:intron | 25.0% |
| ! | AGAAATTAGAGATTAGAACT+TGG | + | chr4.3:89695596-89695615 | MS.gene071006:intron | 25.0% |
| ! | ATCATATAACAATTCAAGCT+TGG | - | chr4.3:89694168-89694187 | None:intergenic | 25.0% |
| ! | ATCTAAATGAGAATGCTAAA+TGG | + | chr4.3:89693970-89693989 | MS.gene071006:CDS | 25.0% |
| ! | TCTAAATGAGAATGCTAAAT+GGG | + | chr4.3:89693971-89693990 | MS.gene071006:CDS | 25.0% |
| ! | TGATAATAGTGATATACTAG+TGG | - | chr4.3:89695651-89695670 | None:intergenic | 25.0% |
| ! | TGTGCAAATATTTGAGAATA+TGG | - | chr4.3:89695681-89695700 | None:intergenic | 25.0% |
| !! | AATCTATTTTGTCCAAGTTA+AGG | + | chr4.3:89694332-89694351 | MS.gene071006:intron | 25.0% |
| !! | CTTTTCTATCCTCATAAAAA+TGG | + | chr4.3:89695994-89696013 | MS.gene071006:intron | 25.0% |
| !! | GTTTTTCCGTGAATTTTTTA+TGG | + | chr4.3:89695947-89695966 | MS.gene071006:intron | 25.0% |
| !! | TTCTCATTCTGTACATATTT+TGG | + | chr4.3:89695717-89695736 | MS.gene071006:intron | 25.0% |
| !!! | AATATTGTTTCTAATCAGCT+TGG | - | chr4.3:89694844-89694863 | None:intergenic | 25.0% |
| !!! | TAAGAAAAATTGACTTGTGT+AGG | - | chr4.3:89694971-89694990 | None:intergenic | 25.0% |
| AAAAAGGGAAAACATACAAG+GGG | - | chr4.3:89694202-89694221 | None:intergenic | 30.0% | |
| AAATACAAGTTTAGGGACAA+AGG | + | chr4.3:89694575-89694594 | MS.gene071006:intron | 30.0% | |
| AATTCTTCTTGTTCAATGAC+AGG | - | chr4.3:89695555-89695574 | None:intergenic | 30.0% | |
| ACAATGACTACAGAAAACAA+TGG | + | chr4.3:89695201-89695220 | MS.gene071006:CDS | 30.0% | |
| ACATGTGCATTAACACTAAA+AGG | - | chr4.3:89695441-89695460 | None:intergenic | 30.0% | |
| ACATTGTGCAAGTTAGAAAA+AGG | - | chr4.3:89694218-89694237 | None:intergenic | 30.0% | |
| ACCTCCTAAAATACAAGTTT+AGG | + | chr4.3:89694567-89694586 | MS.gene071006:intron | 30.0% | |
| AGAAAAAGGGAAAACATACA+AGG | - | chr4.3:89694204-89694223 | None:intergenic | 30.0% | |
| AGCCGAAATATTATTGAACA+CGG | - | chr4.3:89695156-89695175 | None:intergenic | 30.0% | |
| AGGATAAAATCAGTAACCTT+AGG | - | chr4.3:89694053-89694072 | None:intergenic | 30.0% | |
| ATAACAATTCAAGCTTGGTA+AGG | - | chr4.3:89694163-89694182 | None:intergenic | 30.0% | |
| ATATTTGAGAATATGGTGAC+TGG | - | chr4.3:89695674-89695693 | None:intergenic | 30.0% | |
| ATTCTCTAGGTTTCAAAAGA+GGG | - | chr4.3:89695307-89695326 | None:intergenic | 30.0% | |
| CAATGACTACAGAAAACAAT+GGG | + | chr4.3:89695202-89695221 | MS.gene071006:CDS | 30.0% | |
| CATTGTGCAAGTTAGAAAAA+GGG | - | chr4.3:89694217-89694236 | None:intergenic | 30.0% | |
| CCTCCTAAAATACAAGTTTA+GGG | + | chr4.3:89694568-89694587 | MS.gene071006:intron | 30.0% | |
| GAAAAAGGGAAAACATACAA+GGG | - | chr4.3:89694203-89694222 | None:intergenic | 30.0% | |
| GACCGTGTTCAATAATATTT+CGG | + | chr4.3:89695151-89695170 | MS.gene071006:CDS | 30.0% | |
| GCAATCATTGCTTGAAAAAA+AGG | - | chr4.3:89695780-89695799 | None:intergenic | 30.0% | |
| TAATTTATCATGGCTACTCT+TGG | + | chr4.3:89694097-89694116 | MS.gene071006:intron | 30.0% | |
| TATTCTCTAGGTTTCAAAAG+AGG | - | chr4.3:89695308-89695327 | None:intergenic | 30.0% | |
| TCATTGCTTGAAAAAAAGGT+AGG | - | chr4.3:89695776-89695795 | None:intergenic | 30.0% | |
| TCTCATATGGATGTTGTTAT+GGG | + | chr4.3:89695487-89695506 | MS.gene071006:intron | 30.0% | |
| TTAACCTCCATAAAAATGCA+CGG | - | chr4.3:89696104-89696123 | None:intergenic | 30.0% | |
| TTAGGAATGTGAACATACTT+TGG | + | chr4.3:89695839-89695858 | MS.gene071006:intron | 30.0% | |
| TTCTCATATGGATGTTGTTA+TGG | + | chr4.3:89695486-89695505 | MS.gene071006:intron | 30.0% | |
| ! | TGTATTTCCGTGCATTTTTA+TGG | + | chr4.3:89696094-89696113 | MS.gene071006:intron | 30.0% |
| ! | TGTCCCTAAACTTGTATTTT+AGG | - | chr4.3:89694574-89694593 | None:intergenic | 30.0% |
| !! | AGATCTTCACCATTTTTATG+AGG | - | chr4.3:89696006-89696025 | None:intergenic | 30.0% |
| !!! | ATTTTATTGTTGTTTCTCCC+TGG | + | chr4.3:89695093-89695112 | MS.gene071006:intron | 30.0% |
| !!! | ATTTTTTGTTGGTGGTGTAA+GGG | + | chr4.3:89694738-89694757 | MS.gene071006:intron | 30.0% |
| !!! | TACTGATTTTATCCTTCAAC+TGG | + | chr4.3:89694058-89694077 | MS.gene071006:intron | 30.0% |
| !!! | TATTTTTTGTTGGTGGTGTA+AGG | + | chr4.3:89694737-89694756 | MS.gene071006:intron | 30.0% |
| !!! | TGGAAGATATTTTTTGTTGG+TGG | + | chr4.3:89694730-89694749 | MS.gene071006:intron | 30.0% |
| AAAACAATGGGATAAGACAG+TGG | + | chr4.3:89695214-89695233 | MS.gene071006:CDS | 35.0% | |
| AAAGGTAATACATCCGGTTA+TGG | + | chr4.3:89695382-89695401 | MS.gene071006:intron | 35.0% | |
| AACAATAGCTCAACACCTAA+AGG | - | chr4.3:89694770-89694789 | None:intergenic | 35.0% | |
| AAGGTAATACATCCGGTTAT+GGG | + | chr4.3:89695383-89695402 | MS.gene071006:intron | 35.0% | |
| AATGTCTATACTCCAGTTGA+AGG | - | chr4.3:89694073-89694092 | None:intergenic | 35.0% | |
| ACAATCAACCTATCAAGCAT+GGG | - | chr4.3:89694942-89694961 | None:intergenic | 35.0% | |
| ACGGCAGAATAAATATGTAC+GGG | + | chr4.3:89695866-89695885 | MS.gene071006:CDS | 35.0% | |
| ATCTTTGGTGAAACCTTGTT+AGG | + | chr4.3:89695821-89695840 | MS.gene071006:intron | 35.0% | |
| ATGAAACATTGTGATCTCAC+AGG | - | chr4.3:89696246-89696265 | None:intergenic | 35.0% | |
| ATGTGTCAAACACTCTTAAC+CGG | - | chr4.3:89694879-89694898 | None:intergenic | 35.0% | |
| ATGTTTCATCAAGAAGATGC+TGG | + | chr4.3:89696257-89696276 | MS.gene071006:CDS | 35.0% | |
| CACGGCAGAATAAATATGTA+CGG | + | chr4.3:89695865-89695884 | MS.gene071006:CDS | 35.0% | |
| GATGCTAAGAAACTTCTACA+TGG | + | chr4.3:89695178-89695197 | MS.gene071006:CDS | 35.0% | |
| GTATGTTCACATTCCTAACA+AGG | - | chr4.3:89695837-89695856 | None:intergenic | 35.0% | |
| GTCACACTCAAATATCTCAA+GGG | - | chr4.3:89695134-89695153 | None:intergenic | 35.0% | |
| TACAGAATGAGAAGTCAGAA+CGG | - | chr4.3:89695710-89695729 | None:intergenic | 35.0% | |
| TCACAAAACAGTCATGTCAT+AGG | - | chr4.3:89696192-89696211 | None:intergenic | 35.0% | |
| TCACACTCAAATATCTCAAG+GGG | - | chr4.3:89695133-89695152 | None:intergenic | 35.0% | |
| ! | ATTTCCGTGCATTTTTATGG+AGG | + | chr4.3:89696097-89696116 | MS.gene071006:intron | 35.0% |
| !! | AAATCTGATGGTTCTGAAGT+TGG | + | chr4.3:89695263-89695282 | MS.gene071006:CDS | 35.0% |
| !! | CCCTAAACTTGTATTTTAGG+AGG | - | chr4.3:89694571-89694590 | None:intergenic | 35.0% |
| !!! | CAATATTTTAACTGGACACC+CGG | + | chr4.3:89694857-89694876 | MS.gene071006:intron | 35.0% |
| AACCTTAGGTTTGCAGGATT+TGG | - | chr4.3:89694039-89694058 | None:intergenic | 40.0% | |
| ACGTGCTAACTTGGAAATTG+TGG | + | chr4.3:89695327-89695346 | MS.gene071006:CDS | 40.0% | |
| AGGTAATACATCCGGTTATG+GGG | + | chr4.3:89695384-89695403 | MS.gene071006:intron | 40.0% | |
| ATCAGTAACCTTAGGTTTGC+AGG | - | chr4.3:89694045-89694064 | None:intergenic | 40.0% | |
| ATGGAGCTATGTATGCAAGA+TGG | + | chr4.3:89696322-89696341 | MS.gene071006:CDS | 40.0% | |
| CAAGTTAGCACGTATTCTCT+AGG | - | chr4.3:89695320-89695339 | None:intergenic | 40.0% | |
| CGTACATATTTATTCTGCCG+TGG | - | chr4.3:89695867-89695886 | None:intergenic | 40.0% | |
| CGTGCTAACTTGGAAATTGT+GGG | + | chr4.3:89695328-89695347 | MS.gene071006:CDS | 40.0% | |
| CTAACTTGGAAATTGTGGGA+GGG | + | chr4.3:89695332-89695351 | MS.gene071006:CDS | 40.0% | |
| CTAGAGAATACGTGCTAACT+TGG | + | chr4.3:89695318-89695337 | MS.gene071006:CDS | 40.0% | |
| CTGCATTTATGTCAGTGACT+AGG | - | chr4.3:89694250-89694269 | None:intergenic | 40.0% | |
| CTGGCGATTATTATAGTACC+TGG | + | chr4.3:89696212-89696231 | MS.gene071006:intron | 40.0% | |
| GACAATCAACCTATCAAGCA+TGG | - | chr4.3:89694943-89694962 | None:intergenic | 40.0% | |
| GACTGAACTGTTAACTGAAC+TGG | - | chr4.3:89696390-89696409 | None:intergenic | 40.0% | |
| GGTCACACTCAAATATCTCA+AGG | - | chr4.3:89695135-89695154 | None:intergenic | 40.0% | |
| GTTTGTGTCTCAGCTGTATT+TGG | + | chr4.3:89694811-89694830 | MS.gene071006:intron | 40.0% | |
| TAACTTGGAAATTGTGGGAG+GGG | + | chr4.3:89695333-89695352 | MS.gene071006:CDS | 40.0% | |
| TACATAGCTCCATATGCCTT+TGG | - | chr4.3:89696315-89696334 | None:intergenic | 40.0% | |
| TAGGGACAAAGGATGAATAG+AGG | + | chr4.3:89694586-89694605 | MS.gene071006:intron | 40.0% | |
| TATCAATGCAACCCCATAAC+CGG | - | chr4.3:89695398-89695417 | None:intergenic | 40.0% | |
| TCAACTAAATGCTGCTCAGA+TGG | - | chr4.3:89694473-89694492 | None:intergenic | 40.0% | |
| TGTGTCAAACACTCTTAACC+GGG | - | chr4.3:89694878-89694897 | None:intergenic | 40.0% | |
| TTCATTTGTCACAATCTCCG+AGG | - | chr4.3:89693916-89693935 | None:intergenic | 40.0% | |
| ! | AATGACAGGACAAAAAGTGC+AGG | - | chr4.3:89695541-89695560 | None:intergenic | 40.0% |
| ! | ATGACAGGACAAAAAGTGCA+GGG | - | chr4.3:89695540-89695559 | None:intergenic | 40.0% |
| ! | GCAAAACTGGCATTTTCCAA+AGG | + | chr4.3:89696296-89696315 | MS.gene071006:CDS | 40.0% |
| ! | TCTAACTTGCACAATGTGCT+GGG | + | chr4.3:89694221-89694240 | MS.gene071006:intron | 40.0% |
| ! | TGACATGACTGTTTTGTGAC+TGG | + | chr4.3:89696193-89696212 | MS.gene071006:intron | 40.0% |
| ! | TTCTAACTTGCACAATGTGC+TGG | + | chr4.3:89694220-89694239 | MS.gene071006:intron | 40.0% |
| !! | AGAAGATGCTGGTTTGAATG+TGG | + | chr4.3:89696268-89696287 | MS.gene071006:CDS | 40.0% |
| !! | TAGGTGTTGAGCTATTGTTG+AGG | + | chr4.3:89694771-89694790 | MS.gene071006:intron | 40.0% |
| !! | TGGCATTTTCCAAAGGCATA+TGG | + | chr4.3:89696303-89696322 | MS.gene071006:CDS | 40.0% |
| !! | TTGAGTTTTTCAGATCTGGC+TGG | + | chr4.3:89695889-89695908 | MS.gene071006:CDS | 40.0% |
| ATCTCACAGGCATTTCTACC+AGG | - | chr4.3:89696233-89696252 | None:intergenic | 45.0% | |
| CTGAGCAGCATTTAGTTGAG+AGG | + | chr4.3:89694474-89694493 | MS.gene071006:intron | 45.0% | |
| GAATGTGGAGATGGCAAAAC+TGG | + | chr4.3:89696283-89696302 | MS.gene071006:CDS | 45.0% | |
| GCTAACTTGGAAATTGTGGG+AGG | + | chr4.3:89695331-89695350 | MS.gene071006:CDS | 45.0% | |
| GTGTAAGGGTTGTGTCCTTT+AGG | + | chr4.3:89694752-89694771 | MS.gene071006:intron | 45.0% | |
| TAGTGAACAAAGTGTGCCAG+AGG | - | chr4.3:89694284-89694303 | None:intergenic | 45.0% | |
| TGCCAAATCCTGCAAACCTA+AGG | + | chr4.3:89694034-89694053 | MS.gene071006:CDS | 45.0% | |
| TTCGCGACTGCTTTCTCATA+TGG | + | chr4.3:89695474-89695493 | MS.gene071006:intron | 45.0% | |
| ! | GTGAACATACTTTGGCTCCA+CGG | + | chr4.3:89695847-89695866 | MS.gene071006:CDS | 45.0% |
| ! | TGACAGGACAAAAAGTGCAG+GGG | - | chr4.3:89695539-89695558 | None:intergenic | 45.0% |
| !! | CGGGTTGAGTTTTTCAGATC+TGG | + | chr4.3:89695885-89695904 | MS.gene071006:CDS | 45.0% |
| !! | TCTCAGCTGTATTTGGTGCA+TGG | + | chr4.3:89694818-89694837 | MS.gene071006:intron | 45.0% |
| !! | TGCTGGTTTGAATGTGGAGA+TGG | + | chr4.3:89696274-89696293 | MS.gene071006:CDS | 45.0% |
| AAAGCAGTCGCGAACACATG+AGG | - | chr4.3:89695468-89695487 | None:intergenic | 50.0% | |
| AACTTGCACAATGTGCTGGG+AGG | + | chr4.3:89694224-89694243 | MS.gene071006:intron | 50.0% | |
| AAGTGCAGGGGAAGAGAAAG+AGG | - | chr4.3:89695527-89695546 | None:intergenic | 50.0% | |
| AGTGCAGGGGAAGAGAAAGA+GGG | - | chr4.3:89695526-89695545 | None:intergenic | 50.0% | |
| CTGCAGGTGGACAAATCTGA+TGG | + | chr4.3:89695251-89695270 | MS.gene071006:CDS | 50.0% | |
| GAACAAAGTGTGCCAGAGGA+TGG | - | chr4.3:89694280-89694299 | None:intergenic | 50.0% | |
| GAAGATACTCTGCTGCAAGC+TGG | + | chr4.3:89696357-89696376 | MS.gene071006:CDS | 50.0% | |
| GGTTGAGCACAATCAACTGC+AGG | + | chr4.3:89695235-89695254 | MS.gene071006:CDS | 50.0% | |
| GTTGAGGCTGTGTGTCTAAG+AGG | + | chr4.3:89694787-89694806 | MS.gene071006:intron | 50.0% | |
| TCTCCCTGGATGTTGCAGAA+TGG | + | chr4.3:89695107-89695126 | MS.gene071006:intron | 50.0% | |
| TCTGGCTGGCGAATAAGACA+AGG | + | chr4.3:89695903-89695922 | MS.gene071006:CDS | 50.0% | |
| TGAGCACAATCAACTGCAGG+TGG | + | chr4.3:89695238-89695257 | MS.gene071006:CDS | 50.0% | |
| TGCAGAGTCAAACCATCCTC+TGG | + | chr4.3:89694265-89694284 | MS.gene071006:intron | 50.0% | |
| TTGGAAATTGTGGGAGGGGA+AGG | + | chr4.3:89695337-89695356 | MS.gene071006:CDS | 50.0% | |
| !! | GAGAAGTGCCCATGCTTGAT+AGG | + | chr4.3:89694931-89694950 | MS.gene071006:intron | 50.0% |
| AGAGAAAGAGGGCGGGGATA+TGG | - | chr4.3:89695515-89695534 | None:intergenic | 55.0% | |
| GGGCCATTCTGCAACATCCA+GGG | - | chr4.3:89695113-89695132 | None:intergenic | 55.0% | |
| AGGGGAAGAGAAAGAGGGCG+GGG | - | chr4.3:89695521-89695540 | None:intergenic | 60.0% | |
| CAGGGGAAGAGAAAGAGGGC+GGG | - | chr4.3:89695522-89695541 | None:intergenic | 60.0% | |
| GCAGGGGAAGAGAAAGAGGG+CGG | - | chr4.3:89695523-89695542 | None:intergenic | 60.0% | |
| GGGGCCATTCTGCAACATCC+AGG | - | chr4.3:89695114-89695133 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89693911 | 89696424 | 89693911 | ID=MS.gene071006 |
| chr4.3 | mRNA | 89693911 | 89696424 | 89693911 | ID=MS.gene071006.t1;Parent=MS.gene071006 |
| chr4.3 | exon | 89693911 | 89694055 | 89693911 | ID=MS.gene071006.t1.exon1;Parent=MS.gene071006.t1 |
| chr4.3 | CDS | 89693911 | 89694055 | 89693911 | ID=cds.MS.gene071006.t1;Parent=MS.gene071006.t1 |
| chr4.3 | exon | 89695125 | 89695385 | 89695125 | ID=MS.gene071006.t1.exon2;Parent=MS.gene071006.t1 |
| chr4.3 | CDS | 89695125 | 89695385 | 89695125 | ID=cds.MS.gene071006.t1;Parent=MS.gene071006.t1 |
| chr4.3 | exon | 89695843 | 89695924 | 89695843 | ID=MS.gene071006.t1.exon3;Parent=MS.gene071006.t1 |
| chr4.3 | CDS | 89695843 | 89695924 | 89695843 | ID=cds.MS.gene071006.t1;Parent=MS.gene071006.t1 |
| chr4.3 | exon | 89696228 | 89696424 | 89696228 | ID=MS.gene071006.t1.exon4;Parent=MS.gene071006.t1 |
| chr4.3 | CDS | 89696228 | 89696424 | 89696228 | ID=cds.MS.gene071006.t1;Parent=MS.gene071006.t1 |
| Gene Sequence |
| Protein sequence |
