Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071164.t1 | XP_024632083.1 | 97.6 | 535 | 13 | 0 | 4 | 538 | 1 | 535 | 2.30E-305 | 1057.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071164.t1 | Q949Q1 | 72.3 | 534 | 146 | 1 | 4 | 535 | 1 | 534 | 2.3e-229 | 796.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071164.t1 | A0A396J7Q2 | 97.6 | 535 | 13 | 0 | 4 | 538 | 1 | 535 | 1.6e-305 | 1057.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052611 | MS.gene071164 | 0.82222 | 2.66E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071164.t1 | MTR_2g461670 | 93.385 | 514 | 26 | 1 | 25 | 538 | 85 | 590 | 0.0 | 984 |
| MS.gene071164.t1 | MTR_4g109890 | 78.879 | 535 | 113 | 0 | 4 | 538 | 1 | 535 | 0.0 | 906 |
| MS.gene071164.t1 | MTR_2g015550 | 53.745 | 534 | 241 | 5 | 4 | 535 | 1 | 530 | 0.0 | 612 |
| MS.gene071164.t1 | MTR_2g006790 | 48.037 | 535 | 246 | 7 | 4 | 535 | 1 | 506 | 0.0 | 520 |
| MS.gene071164.t1 | MTR_2g027740 | 44.960 | 496 | 260 | 5 | 49 | 537 | 176 | 665 | 6.17e-154 | 456 |
| MS.gene071164.t1 | MTR_7g075840 | 47.312 | 465 | 237 | 5 | 76 | 537 | 203 | 662 | 3.59e-147 | 438 |
| MS.gene071164.t1 | MTR_3g107930 | 46.841 | 459 | 234 | 4 | 84 | 537 | 133 | 586 | 1.94e-145 | 431 |
| MS.gene071164.t1 | MTR_8g092000 | 45.474 | 464 | 244 | 5 | 76 | 538 | 124 | 579 | 1.32e-144 | 429 |
| MS.gene071164.t1 | MTR_3g107930 | 46.841 | 459 | 234 | 4 | 84 | 537 | 210 | 663 | 1.58e-144 | 431 |
| MS.gene071164.t1 | MTR_8g033360 | 45.727 | 433 | 225 | 4 | 76 | 503 | 170 | 597 | 1.65e-132 | 402 |
| MS.gene071164.t1 | MTR_7g055600 | 46.117 | 412 | 212 | 5 | 133 | 538 | 26 | 433 | 5.41e-125 | 373 |
| MS.gene071164.t1 | MTR_7g057530 | 46.117 | 412 | 212 | 5 | 133 | 538 | 26 | 433 | 5.41e-125 | 373 |
| MS.gene071164.t1 | MTR_6g016380 | 44.039 | 411 | 221 | 5 | 133 | 538 | 148 | 554 | 8.51e-117 | 356 |
| MS.gene071164.t1 | MTR_7g096160 | 36.876 | 461 | 255 | 7 | 83 | 537 | 222 | 652 | 4.60e-98 | 311 |
| MS.gene071164.t1 | MTR_2g082650 | 37.805 | 410 | 236 | 5 | 147 | 537 | 1 | 410 | 7.27e-98 | 303 |
| MS.gene071164.t1 | MTR_2g082650 | 37.560 | 418 | 242 | 5 | 139 | 537 | 122 | 539 | 1.00e-97 | 306 |
| MS.gene071164.t1 | MTR_7g012370 | 36.296 | 405 | 239 | 6 | 142 | 527 | 121 | 525 | 2.40e-93 | 296 |
| MS.gene071164.t1 | MTR_4g133570 | 37.073 | 410 | 237 | 5 | 149 | 537 | 53 | 462 | 2.39e-92 | 290 |
| MS.gene071164.t1 | MTR_6g013840 | 36.627 | 415 | 244 | 6 | 142 | 537 | 116 | 530 | 6.44e-87 | 278 |
| MS.gene071164.t1 | MTR_3g452360 | 36.782 | 435 | 249 | 11 | 121 | 537 | 102 | 528 | 1.06e-85 | 275 |
| MS.gene071164.t1 | MTR_3g452360 | 38.961 | 385 | 211 | 9 | 171 | 537 | 1 | 379 | 3.16e-85 | 269 |
| MS.gene071164.t1 | MTR_1g070490 | 33.202 | 509 | 284 | 14 | 49 | 538 | 127 | 598 | 8.78e-80 | 262 |
| MS.gene071164.t1 | MTR_7g012370 | 33.645 | 321 | 196 | 5 | 142 | 445 | 121 | 441 | 1.21e-62 | 212 |
| MS.gene071164.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 82 | 537 | 122 | 563 | 2.66e-56 | 198 |
| MS.gene071164.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 82 | 537 | 162 | 603 | 3.79e-56 | 198 |
| MS.gene071164.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 82 | 537 | 182 | 623 | 4.75e-56 | 198 |
| MS.gene071164.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 82 | 537 | 182 | 623 | 6.00e-56 | 198 |
| MS.gene071164.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 82 | 537 | 202 | 643 | 6.63e-56 | 198 |
| MS.gene071164.t1 | MTR_7g074680 | 34.140 | 372 | 220 | 7 | 172 | 537 | 308 | 660 | 2.81e-54 | 194 |
| MS.gene071164.t1 | MTR_4g133942 | 49.749 | 199 | 70 | 3 | 342 | 537 | 161 | 332 | 1.02e-50 | 177 |
| MS.gene071164.t1 | MTR_7g109210 | 32.065 | 184 | 118 | 4 | 343 | 520 | 159 | 341 | 9.00e-25 | 106 |
| MS.gene071164.t1 | MTR_3g092310 | 31.937 | 191 | 120 | 5 | 343 | 524 | 140 | 329 | 9.10e-25 | 105 |
| MS.gene071164.t1 | MTR_5g036580 | 34.031 | 191 | 117 | 6 | 343 | 524 | 166 | 356 | 1.50e-24 | 106 |
| MS.gene071164.t1 | MTR_6g008900 | 34.239 | 184 | 109 | 6 | 343 | 516 | 165 | 346 | 5.00e-24 | 104 |
| MS.gene071164.t1 | MTR_4g071620 | 34.239 | 184 | 109 | 6 | 343 | 516 | 165 | 346 | 5.00e-24 | 104 |
| MS.gene071164.t1 | MTR_8g078240 | 34.021 | 194 | 115 | 6 | 343 | 524 | 142 | 334 | 7.74e-24 | 103 |
| MS.gene071164.t1 | MTR_3g111600 | 34.031 | 191 | 117 | 5 | 343 | 524 | 80 | 270 | 1.37e-23 | 101 |
| MS.gene071164.t1 | MTR_4g118030 | 31.073 | 177 | 114 | 5 | 343 | 512 | 145 | 320 | 1.49e-22 | 99.4 |
| MS.gene071164.t1 | MTR_1g021855 | 33.679 | 193 | 116 | 6 | 343 | 524 | 165 | 356 | 7.16e-22 | 97.8 |
| MS.gene071164.t1 | MTR_7g094230 | 28.634 | 227 | 150 | 5 | 297 | 512 | 100 | 325 | 1.08e-21 | 97.1 |
| MS.gene071164.t1 | MTR_5g019220 | 32.673 | 202 | 125 | 6 | 343 | 534 | 166 | 366 | 3.66e-21 | 95.5 |
| MS.gene071164.t1 | MTR_1g089820 | 30.000 | 180 | 119 | 4 | 343 | 516 | 154 | 332 | 5.77e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071164.t1 | AT1G18580 | 72.797 | 522 | 140 | 1 | 19 | 538 | 16 | 537 | 0.0 | 805 |
| MS.gene071164.t1 | AT2G20810 | 51.769 | 537 | 250 | 8 | 4 | 535 | 1 | 533 | 0.0 | 568 |
| MS.gene071164.t1 | AT5G47780 | 46.482 | 469 | 245 | 4 | 71 | 538 | 152 | 615 | 1.02e-155 | 458 |
| MS.gene071164.t1 | AT3G61130 | 47.495 | 459 | 232 | 5 | 82 | 537 | 219 | 671 | 7.04e-153 | 453 |
| MS.gene071164.t1 | AT4G38270 | 44.820 | 473 | 249 | 7 | 73 | 537 | 206 | 674 | 2.60e-141 | 423 |
| MS.gene071164.t1 | AT4G38270 | 44.820 | 473 | 249 | 7 | 73 | 537 | 210 | 678 | 4.40e-141 | 423 |
| MS.gene071164.t1 | AT3G25140 | 47.330 | 412 | 207 | 5 | 133 | 538 | 151 | 558 | 4.73e-133 | 398 |
| MS.gene071164.t1 | AT2G46480 | 44.181 | 464 | 241 | 4 | 82 | 537 | 85 | 538 | 8.64e-133 | 397 |
| MS.gene071164.t1 | AT2G46480 | 44.181 | 464 | 241 | 4 | 82 | 537 | 98 | 551 | 1.19e-132 | 397 |
| MS.gene071164.t1 | AT2G46480 | 40.948 | 464 | 231 | 5 | 82 | 537 | 85 | 513 | 3.21e-117 | 356 |
| MS.gene071164.t1 | AT2G46480 | 40.948 | 464 | 231 | 5 | 82 | 537 | 98 | 526 | 7.39e-117 | 355 |
| MS.gene071164.t1 | AT3G02350 | 41.509 | 477 | 255 | 8 | 82 | 538 | 88 | 560 | 6.83e-115 | 352 |
| MS.gene071164.t1 | AT2G30575 | 35.792 | 461 | 263 | 5 | 82 | 537 | 176 | 608 | 6.58e-100 | 314 |
| MS.gene071164.t1 | AT5G54690 | 38.677 | 393 | 222 | 4 | 164 | 537 | 140 | 532 | 8.80e-98 | 306 |
| MS.gene071164.t1 | AT3G01040 | 37.831 | 415 | 239 | 5 | 142 | 537 | 116 | 530 | 6.62e-96 | 301 |
| MS.gene071164.t1 | AT3G01040 | 37.831 | 415 | 239 | 5 | 142 | 537 | 116 | 530 | 6.62e-96 | 301 |
| MS.gene071164.t1 | AT5G15470 | 38.072 | 415 | 238 | 5 | 142 | 537 | 116 | 530 | 2.99e-94 | 297 |
| MS.gene071164.t1 | AT1G06780 | 34.348 | 460 | 274 | 6 | 81 | 537 | 153 | 587 | 2.82e-92 | 294 |
| MS.gene071164.t1 | AT1G06780 | 34.348 | 460 | 274 | 6 | 81 | 537 | 166 | 600 | 4.50e-92 | 294 |
| MS.gene071164.t1 | AT3G01040 | 36.386 | 404 | 227 | 6 | 142 | 537 | 116 | 497 | 3.71e-85 | 273 |
| MS.gene071164.t1 | AT3G58790 | 38.107 | 412 | 229 | 10 | 146 | 537 | 1 | 406 | 5.96e-83 | 264 |
| MS.gene071164.t1 | AT3G58790 | 36.534 | 427 | 249 | 8 | 131 | 537 | 114 | 538 | 5.05e-82 | 266 |
| MS.gene071164.t1 | AT2G38650 | 31.808 | 459 | 290 | 9 | 82 | 538 | 181 | 618 | 7.63e-66 | 225 |
| MS.gene071164.t1 | AT2G38650 | 31.808 | 459 | 290 | 9 | 82 | 538 | 181 | 618 | 7.63e-66 | 225 |
| MS.gene071164.t1 | AT2G38650 | 31.707 | 369 | 227 | 10 | 82 | 447 | 181 | 527 | 2.94e-42 | 159 |
| MS.gene071164.t1 | AT3G28340 | 28.824 | 340 | 190 | 13 | 205 | 524 | 39 | 346 | 1.44e-27 | 114 |
| MS.gene071164.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 343 | 524 | 169 | 359 | 1.35e-24 | 106 |
| MS.gene071164.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 343 | 524 | 169 | 359 | 1.35e-24 | 106 |
| MS.gene071164.t1 | AT3G62660 | 31.122 | 196 | 125 | 5 | 343 | 529 | 164 | 358 | 3.13e-24 | 104 |
| MS.gene071164.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 343 | 524 | 150 | 339 | 5.37e-24 | 103 |
| MS.gene071164.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 343 | 524 | 150 | 339 | 5.37e-24 | 103 |
| MS.gene071164.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 343 | 524 | 150 | 339 | 5.37e-24 | 103 |
| MS.gene071164.t1 | AT1G24170 | 34.375 | 192 | 115 | 7 | 343 | 524 | 172 | 362 | 2.25e-23 | 102 |
| MS.gene071164.t1 | AT1G19300 | 32.292 | 192 | 119 | 6 | 343 | 524 | 150 | 340 | 1.12e-22 | 100 |
| MS.gene071164.t1 | AT3G06260 | 31.818 | 176 | 113 | 4 | 343 | 512 | 150 | 324 | 1.87e-22 | 99.4 |
| MS.gene071164.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 343 | 524 | 165 | 354 | 9.74e-22 | 97.4 |
| MS.gene071164.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 343 | 524 | 165 | 354 | 9.74e-22 | 97.4 |
| MS.gene071164.t1 | AT3G50760 | 31.915 | 188 | 117 | 5 | 343 | 520 | 136 | 322 | 2.98e-20 | 92.8 |
| MS.gene071164.t1 | AT1G13250 | 33.508 | 191 | 117 | 5 | 343 | 524 | 144 | 333 | 5.69e-20 | 92.0 |
| MS.gene071164.t1 | AT1G74088 | 51.899 | 79 | 31 | 1 | 154 | 232 | 26 | 97 | 4.16e-18 | 80.1 |
| MS.gene071164.t1 | AT1G74088 | 50.000 | 72 | 29 | 1 | 161 | 232 | 1 | 65 | 1.93e-14 | 68.6 |
Find 0 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGAAAAACTAATTTTAT+TGG | + | 16932:100310-100329 | MS.gene071164:intergenic | 10.0% |
| !! | ACATTAATTTAAATCTTGAT+TGG | + | 16932:98299-98318 | MS.gene071164:intergenic | 15.0% |
| !! | GTTTAGTAATAACAAAAATT+TGG | + | 16932:100545-100564 | MS.gene071164:intergenic | 15.0% |
| !! | TAAATTTCAATTCATTTATC+AGG | - | 16932:98345-98364 | MS.gene071164:CDS | 15.0% |
| !!! | CTTATAATTTTTGTTATAAG+TGG | - | 16932:98684-98703 | MS.gene071164:CDS | 15.0% |
| !! | AAATGTATTTACTCCAAATT+TGG | + | 16932:98453-98472 | MS.gene071164:intergenic | 20.0% |
| !! | AATCATGTTCTTTAACATTA+GGG | - | 16932:98842-98861 | MS.gene071164:CDS | 20.0% |
| !! | GTTCAGATTCATAATAAAAA+AGG | + | 16932:98815-98834 | MS.gene071164:intergenic | 20.0% |
| !!! | AAGATTTCTTGTTGTAAAAA+TGG | - | 16932:98895-98914 | MS.gene071164:CDS | 20.0% |
| !!! | GTAAATTCTACAACAATTTT+AGG | - | 16932:99537-99556 | MS.gene071164:CDS | 20.0% |
| !!! | TAGTATATAATTTGTGTTTC+TGG | - | 16932:99383-99402 | MS.gene071164:CDS | 20.0% |
| ! | AACATAATTACCATCAAGAT+CGG | - | 16932:98223-98242 | MS.gene071164:CDS | 25.0% |
| ! | AACTTGTCAAATGAACTAAA+TGG | + | 16932:99124-99143 | MS.gene071164:intergenic | 25.0% |
| ! | AATAACAATTTGATGTGAGA+GGG | - | 16932:98545-98564 | MS.gene071164:CDS | 25.0% |
| ! | AATGAAATTCTTCAACATTC+TGG | + | 16932:100411-100430 | MS.gene071164:intergenic | 25.0% |
| ! | ACTTGTCAAATGAACTAAAT+GGG | + | 16932:99123-99142 | MS.gene071164:intergenic | 25.0% |
| ! | AGAATGTAATATTACCAGAA+GGG | + | 16932:98259-98278 | MS.gene071164:intergenic | 25.0% |
| ! | AGAATGTTGAAGAATTTCAT+TGG | - | 16932:100410-100429 | MS.gene071164:intron | 25.0% |
| ! | ATAGCACATTCTTGAATATA+AGG | + | 16932:101123-101142 | MS.gene071164:intergenic | 25.0% |
| ! | ATCATGTTCTTTAACATTAG+GGG | - | 16932:98843-98862 | MS.gene071164:CDS | 25.0% |
| ! | CAATCATGTTCTTTAACATT+AGG | - | 16932:98841-98860 | MS.gene071164:CDS | 25.0% |
| ! | CGCAAAATCATGAATTTAAA+TGG | + | 16932:98774-98793 | MS.gene071164:intergenic | 25.0% |
| ! | TAGCACATTCTTGAATATAA+GGG | + | 16932:101122-101141 | MS.gene071164:intergenic | 25.0% |
| ! | TATATTCAAGAATGTGCTAT+AGG | - | 16932:101123-101142 | MS.gene071164:CDS | 25.0% |
| ! | TCTTGAAATCTTCATGAATA+TGG | - | 16932:99323-99342 | MS.gene071164:CDS | 25.0% |
| ! | TGTTATTACTAAACCATCTT+CGG | - | 16932:100551-100570 | MS.gene071164:intron | 25.0% |
| ! | TTAAAGAACATGATTGAAAC+TGG | + | 16932:98837-98856 | MS.gene071164:intergenic | 25.0% |
| ! | TTGAAAAGAGTAAAAAAGAG+AGG | + | 16932:98527-98546 | MS.gene071164:intergenic | 25.0% |
| ! | TTTCAATTCATTTATCAGGA+TGG | - | 16932:98349-98368 | MS.gene071164:CDS | 25.0% |
| ! | TTTCTCAGTTATGACTTTAA+AGG | - | 16932:100370-100389 | MS.gene071164:intron | 25.0% |
| !! | AAAGGATGAAAATTTTCCTA+AGG | - | 16932:99706-99725 | MS.gene071164:intron | 25.0% |
| !! | ATATCATTTCTGCATCTTTT+CGG | - | 16932:100228-100247 | MS.gene071164:intron | 25.0% |
| !! | ATGAAAATTTTCCTAAGGAT+AGG | - | 16932:99711-99730 | MS.gene071164:intron | 25.0% |
| !!! | ACTTCTTAGTTTTTATGGTT+TGG | - | 16932:100921-100940 | MS.gene071164:intron | 25.0% |
| !!! | ATGTTTTTGACTTGATTCAA+TGG | - | 16932:100809-100828 | MS.gene071164:intron | 25.0% |
| !!! | ATTTTGTCTGTATTTAAGAC+TGG | - | 16932:98476-98495 | MS.gene071164:CDS | 25.0% |
| !!! | GAGACAAAAATAGTTTTAAC+AGG | + | 16932:99633-99652 | MS.gene071164:intergenic | 25.0% |
| !!! | TCTACAACAATTTTAGGATT+AGG | - | 16932:99543-99562 | MS.gene071164:intron | 25.0% |
| AAATGTACTTGGTCCAAATT+TGG | - | 16932:98437-98456 | MS.gene071164:CDS | 30.0% | |
| ACATAATTACCATCAAGATC+GGG | - | 16932:98224-98243 | MS.gene071164:CDS | 30.0% | |
| AGTTGTAACACAATCTAGAA+AGG | + | 16932:99190-99209 | MS.gene071164:intergenic | 30.0% | |
| ATGTGAAACTTACTTCTGAT+TGG | - | 16932:100134-100153 | MS.gene071164:intron | 30.0% | |
| CAATAACAATTTGATGTGAG+AGG | - | 16932:98544-98563 | MS.gene071164:CDS | 30.0% | |
| CAGAAGAAAATCAGAAACTA+TGG | + | 16932:99072-99091 | MS.gene071164:intergenic | 30.0% | |
| CCTTGAAGATTAAAGTTGAA+AGG | + | 16932:99961-99980 | MS.gene071164:intergenic | 30.0% | |
| CCTTTCAACTTTAATCTTCA+AGG | - | 16932:99958-99977 | MS.gene071164:intron | 30.0% | |
| CTCCTTCATATTAAAGCAAA+AGG | - | 16932:98412-98431 | MS.gene071164:CDS | 30.0% | |
| CTTATAGATAATCTCAACCA+TGG | + | 16932:101057-101076 | MS.gene071164:intergenic | 30.0% | |
| CTTGTCAAATGAACTAAATG+GGG | + | 16932:99122-99141 | MS.gene071164:intergenic | 30.0% | |
| GAGAATGTAATATTACCAGA+AGG | + | 16932:98260-98279 | MS.gene071164:intergenic | 30.0% | |
| GATTATCTATAAGCAGGTAT+AGG | - | 16932:101064-101083 | MS.gene071164:CDS | 30.0% | |
| GTTGAAAGGCTTCTTATAAT+CGG | + | 16932:99947-99966 | MS.gene071164:intergenic | 30.0% | |
| TAACGTGTTTGCTCAAATAT+CGG | - | 16932:100078-100097 | MS.gene071164:intron | 30.0% | |
| TAGTTGTTGCAATGTCATAA+TGG | + | 16932:99994-100013 | MS.gene071164:intergenic | 30.0% | |
| TTGCCAATAGTGATATATTG+CGG | + | 16932:100851-100870 | MS.gene071164:intergenic | 30.0% | |
| TTGTCAAATGAACTAAATGG+GGG | + | 16932:99121-99140 | MS.gene071164:intergenic | 30.0% | |
| TTGTTACTACTTTGTGAAAC+AGG | - | 16932:98935-98954 | MS.gene071164:CDS | 30.0% | |
| TTTATGTACTTGTTCCATAG+TGG | + | 16932:101090-101109 | MS.gene071164:intergenic | 30.0% | |
| ! | AAAACAATCTTCTCAAGTTG+TGG | + | 16932:100598-100617 | MS.gene071164:intergenic | 30.0% |
| ! | GACCTTTTGCTTTAATATGA+AGG | + | 16932:98417-98436 | MS.gene071164:intergenic | 30.0% |
| ! | GTTTTTCATATTGTAACCGA+CGG | - | 16932:100319-100338 | MS.gene071164:intron | 30.0% |
| !! | ATAGAAGTGCTGTAATAATG+AGG | + | 16932:99251-99270 | MS.gene071164:intergenic | 30.0% |
| !! | GTTGTTACTTGTTACACTTT+TGG | - | 16932:99593-99612 | MS.gene071164:intron | 30.0% |
| !! | TAGAAGTGCTGTAATAATGA+GGG | + | 16932:99250-99269 | MS.gene071164:intergenic | 30.0% |
| !!! | AATCTCGAGCCTTTTATTTT+GGG | - | 16932:100479-100498 | MS.gene071164:intron | 30.0% |
| !!! | TTTTTCAAGGCAATTAACAG+AGG | - | 16932:99769-99788 | MS.gene071164:intron | 30.0% |
| AAGGCAATTAACAGAGGAAA+TGG | - | 16932:99775-99794 | MS.gene071164:intron | 35.0% | |
| AAGGCTTCTTATAATCGGTT+CGG | + | 16932:99942-99961 | MS.gene071164:intergenic | 35.0% | |
| ACAATAATCTTCACCTAGCA+TGG | - | 16932:99834-99853 | MS.gene071164:intron | 35.0% | |
| AGCAAAAGGTCAAATGTACT+TGG | - | 16932:98426-98445 | MS.gene071164:CDS | 35.0% | |
| AGTTGAGTAATTGTCATTCG+AGG | - | 16932:99418-99437 | MS.gene071164:CDS | 35.0% | |
| CAAGTTGTGGATAAATCTCA+GGG | + | 16932:100585-100604 | MS.gene071164:intergenic | 35.0% | |
| CAATAATCTTCACCTAGCAT+GGG | - | 16932:99835-99854 | MS.gene071164:intron | 35.0% | |
| GAATTGCATGGAAACGTAAT+CGG | - | 16932:100670-100689 | MS.gene071164:intron | 35.0% | |
| GGTTGAGATTATCTATAAGC+AGG | - | 16932:101058-101077 | MS.gene071164:CDS | 35.0% | |
| GTAAAATTCAGCCTATCCTT+AGG | + | 16932:99725-99744 | MS.gene071164:intergenic | 35.0% | |
| GTATAACCATTTCGCAGAAT+GGG | + | 16932:99024-99043 | MS.gene071164:intergenic | 35.0% | |
| TGACCGCAATATATCACTAT+TGG | - | 16932:100845-100864 | MS.gene071164:intron | 35.0% | |
| TGAGTCGATTATCGATATTG+AGG | + | 16932:100993-101012 | MS.gene071164:intergenic | 35.0% | |
| TGCAATTCAAGTGAGAAAAG+TGG | + | 16932:100658-100677 | MS.gene071164:intergenic | 35.0% | |
| TGTAAGCAATGAAGACTCTT+CGG | + | 16932:100115-100134 | MS.gene071164:intergenic | 35.0% | |
| TGTTGTTGCAAGACTGAAAA+GGG | + | 16932:99282-99301 | MS.gene071164:intergenic | 35.0% | |
| TTTCAGTCTTGCAACAACAA+TGG | - | 16932:99283-99302 | MS.gene071164:CDS | 35.0% | |
| ! | ATATTACCAGAAGGGTATGT+TGG | + | 16932:98251-98270 | MS.gene071164:intergenic | 35.0% |
| ! | CATCTTTTCGGATAATGTAC+TGG | - | 16932:100240-100259 | MS.gene071164:intron | 35.0% |
| ! | CCATAAAAACTAAGAAGTGC+AGG | + | 16932:100919-100938 | MS.gene071164:intergenic | 35.0% |
| ! | CTTTTCTCACTTGAATTGCA+TGG | - | 16932:100658-100677 | MS.gene071164:intron | 35.0% |
| ! | TAAAAACTAAGAAGTGCAGG+AGG | + | 16932:100916-100935 | MS.gene071164:intergenic | 35.0% |
| ! | TAATCGACTCATTGAAAGTG+CGG | - | 16932:101002-101021 | MS.gene071164:CDS | 35.0% |
| ! | TATGGGATCTGTTTTCTTCT+TGG | - | 16932:98162-98181 | MS.gene071164:CDS | 35.0% |
| ! | TCAAGTTGTGGATAAATCTC+AGG | + | 16932:100586-100605 | MS.gene071164:intergenic | 35.0% |
| ! | TGTCTGTATTTAAGACTGGA+TGG | - | 16932:98480-98499 | MS.gene071164:CDS | 35.0% |
| ! | TGTTACCTTTTGCAGCTATT+AGG | - | 16932:98965-98984 | MS.gene071164:CDS | 35.0% |
| ! | TTGTTGTTGCAAGACTGAAA+AGG | + | 16932:99283-99302 | MS.gene071164:intergenic | 35.0% |
| !! | AAAGTGGTGTTAGGTCTTTT+TGG | + | 16932:100642-100661 | MS.gene071164:intergenic | 35.0% |
| !! | CCTGCACTTCTTAGTTTTTA+TGG | - | 16932:100916-100935 | MS.gene071164:intron | 35.0% |
| !! | GAATCTCGAGCCTTTTATTT+TGG | - | 16932:100478-100497 | MS.gene071164:intron | 35.0% |
| !! | TAAGTGCGACATCTTTTTCA+AGG | - | 16932:99756-99775 | MS.gene071164:intron | 35.0% |
| !!! | AGATGGCATGTTTTAGGATT+AGG | - | 16932:100961-100980 | MS.gene071164:intron | 35.0% |
| !!! | ATCTCGAGCCTTTTATTTTG+GGG | - | 16932:100480-100499 | MS.gene071164:intron | 35.0% |
| !!! | CTTTTATTTTGGGGCATATC+CGG | - | 16932:100489-100508 | MS.gene071164:intron | 35.0% |
| AAACTATGGCAGATCCTACA+AGG | + | 16932:99058-99077 | MS.gene071163:intergenic | 40.0% | |
| AAATAGTGACGTGGGAAACA+TGG | - | 16932:99444-99463 | MS.gene071164:CDS | 40.0% | |
| AAGCTCAAAGTTTGATCCAC+AGG | - | 16932:100762-100781 | MS.gene071164:intron | 40.0% | |
| ATCCTAAAACATGCCATCTC+CGG | + | 16932:100960-100979 | MS.gene071164:intergenic | 40.0% | |
| ATCCTACAAGGAATTGCGAA+CGG | + | 16932:99046-99065 | MS.gene071164:intergenic | 40.0% | |
| ATTCGACGGAAGTTGTCTTA+TGG | - | 16932:98144-98163 | MS.gene071164:CDS | 40.0% | |
| ATTGCAGGACAGGAATACAA+AGG | - | 16932:99688-99707 | MS.gene071164:intron | 40.0% | |
| CAAGTGAGAAAAGTGGTGTT+AGG | + | 16932:100651-100670 | MS.gene071164:intergenic | 40.0% | |
| CGGATATGCCCCAAAATAAA+AGG | + | 16932:100491-100510 | MS.gene071164:intergenic | 40.0% | |
| CGGCTGTTATTCACTTCAAT+GGG | - | 16932:101022-101041 | MS.gene071164:CDS | 40.0% | |
| GAACACCTAATAGCTGCAAA+AGG | + | 16932:98973-98992 | MS.gene071164:intergenic | 40.0% | |
| GGGTTTGAATTCATACAGAG+AGG | - | 16932:98863-98882 | MS.gene071164:CDS | 40.0% | |
| GGTATAACCATTTCGCAGAA+TGG | + | 16932:99025-99044 | MS.gene071164:intergenic | 40.0% | |
| TAAATGCTGAACCGAAACTG+CGG | - | 16932:100515-100534 | MS.gene071164:intron | 40.0% | |
| TAAGACAACTTCCGTCGAAT+CGG | + | 16932:98144-98163 | MS.gene071164:intergenic | 40.0% | |
| TAAGTGACATATTGCAGGAC+AGG | - | 16932:99678-99697 | MS.gene071164:intron | 40.0% | |
| TCAATGGGAACATGAAACCA+TGG | - | 16932:101037-101056 | MS.gene071164:CDS | 40.0% | |
| TGCAATAACCACATAAGCCT+TGG | + | 16932:99807-99826 | MS.gene071164:intergenic | 40.0% | |
| TTCGACGGAAGTTGTCTTAT+GGG | - | 16932:98145-98164 | MS.gene071164:CDS | 40.0% | |
| TTCGGTTCAGCATTTACATC+CGG | + | 16932:100511-100530 | MS.gene071164:intergenic | 40.0% | |
| ! | AATTTGGAGTTCCGCAGTTT+CGG | + | 16932:100529-100548 | MS.gene071164:intergenic | 40.0% |
| ! | CCTGCAATATGTCACTTACT+CGG | + | 16932:99676-99695 | MS.gene071164:intergenic | 40.0% |
| ! | CTTTAAAGGAGCAACGATAG+AGG | - | 16932:100384-100403 | MS.gene071164:intron | 40.0% |
| ! | GATTGGTCGCATCTGATAAA+GGG | + | 16932:98282-98301 | MS.gene071164:intergenic | 40.0% |
| ! | GGATAATGTACTGGCAACAT+TGG | - | 16932:100249-100268 | MS.gene071164:intron | 40.0% |
| ! | TGATTGGTCGCATCTGATAA+AGG | + | 16932:98283-98302 | MS.gene071164:intergenic | 40.0% |
| !! | AGCATTTTCTGTTGTCGGTT+TGG | - | 16932:98185-98204 | MS.gene071164:CDS | 40.0% |
| !! | CTTGGAGCATTTTCTGTTGT+CGG | - | 16932:98180-98199 | MS.gene071164:CDS | 40.0% |
| !! | TTCTGTTGTCGGTTTGGTTA+TGG | - | 16932:98191-98210 | MS.gene071164:CDS | 40.0% |
| AAGACAACTTCCGTCGAATC+GGG | + | 16932:98143-98162 | MS.gene071164:intergenic | 45.0% | |
| ACCAAGACAAGTCTAACTGC+AGG | + | 16932:98629-98648 | MS.gene071164:intergenic | 45.0% | |
| ACCTTCCCTGCAAAAACTCT+CGG | - | 16932:100165-100184 | MS.gene071164:intron | 45.0% | |
| ACTATGGAACGATGCAAGCA+TGG | - | 16932:100347-100366 | MS.gene071164:intron | 45.0% | |
| AGAGGAAATGGTTCTTGCCA+AGG | - | 16932:99787-99806 | MS.gene071164:intron | 45.0% | |
| ATAGATGCTGATCCGTTAGC+CGG | + | 16932:100210-100229 | MS.gene071164:intergenic | 45.0% | |
| CAGGGATGTAAAACCGAAGA+TGG | + | 16932:100567-100586 | MS.gene071164:intergenic | 45.0% | |
| CCGAGTAAGTGACATATTGC+AGG | - | 16932:99673-99692 | MS.gene071164:intron | 45.0% | |
| CCTGTGAAATGCTTCAAGAC+AGG | + | 16932:100707-100726 | MS.gene071164:intergenic | 45.0% | |
| CGAGGCTTAAATAGTGACGT+GGG | - | 16932:99436-99455 | MS.gene071164:CDS | 45.0% | |
| GACTGGAAAGCCTGTTAACA+AGG | - | 16932:99910-99929 | MS.gene071164:intron | 45.0% | |
| GCGGCTGTTATTCACTTCAA+TGG | - | 16932:101021-101040 | MS.gene071164:CDS | 45.0% | |
| GGACAACAACATCGTCATCA+AGG | + | 16932:100621-100640 | MS.gene071164:intergenic | 45.0% | |
| GTTAACAGGCTTTCCAGTCA+TGG | + | 16932:99909-99928 | MS.gene071164:intergenic | 45.0% | |
| TAAGCAGGTATAGGCCACTA+TGG | - | 16932:101073-101092 | MS.gene071164:CDS | 45.0% | |
| TACCGTTCGCAATTCCTTGT+AGG | - | 16932:99041-99060 | MS.gene071164:CDS | 45.0% | |
| TATGTTGGACCCGATCTTGA+TGG | + | 16932:98236-98255 | MS.gene071164:intergenic | 45.0% | |
| TCCTGCAGTTAGACTTGTCT+TGG | - | 16932:98625-98644 | MS.gene071164:CDS | 45.0% | |
| TCGAGCAGCTGTTTGACAAT+CGG | + | 16932:100454-100473 | MS.gene071164:intergenic | 45.0% | |
| TCGAGGCTTAAATAGTGACG+TGG | - | 16932:99435-99454 | MS.gene071164:CDS | 45.0% | |
| TCGGCTTCTTCCTTGTTAAC+AGG | + | 16932:99923-99942 | MS.gene071164:intergenic | 45.0% | |
| TTACTCGGTAAGTACACACG+AGG | + | 16932:99661-99680 | MS.gene071164:intergenic | 45.0% | |
| ! | CCTGTCTTGAAGCATTTCAC+AGG | - | 16932:100704-100723 | MS.gene071164:intron | 45.0% |
| ! | CTCATCCGAGAGTTTTTGCA+GGG | + | 16932:100173-100192 | MS.gene071164:intergenic | 45.0% |
| ! | TCTCATCCGAGAGTTTTTGC+AGG | + | 16932:100174-100193 | MS.gene071164:intergenic | 45.0% |
| AACAGGCTTTCCAGTCATGG+CGG | + | 16932:99906-99925 | MS.gene071164:intergenic | 50.0% | |
| AGAATGCCGATGGATCACTC+TGG | - | 16932:100875-100894 | MS.gene071164:intron | 50.0% | |
| ATGAGACGAGAAACTCCCTC+CGG | - | 16932:100188-100207 | MS.gene071164:intron | 50.0% | |
| CGTTCCATAGTTGACACCGT+CGG | + | 16932:100338-100357 | MS.gene071164:intergenic | 50.0% | |
| CTTTCAAAAGCCGCCATGAC+TGG | - | 16932:99893-99912 | MS.gene071164:intron | 50.0% | |
| GAGCTTCCAGAGTGATCCAT+CGG | + | 16932:100884-100903 | MS.gene071164:intergenic | 50.0% | |
| GCACATCCCATTCTGCGAAA+TGG | - | 16932:99015-99034 | MS.gene071164:CDS | 50.0% | |
| GGTTCTTGCCAAGGCTTATG+TGG | - | 16932:99796-99815 | MS.gene071164:intron | 50.0% | |
| TGGCAAGAGAAGAATGCCGA+TGG | - | 16932:100865-100884 | MS.gene071164:intron | 50.0% | |
| TTGAGCTAAGCTCCCATGCT+AGG | + | 16932:99850-99869 | MS.gene071164:intergenic | 50.0% | |
| ! | GACCGGAGATGGCATGTTTT+AGG | - | 16932:100955-100974 | MS.gene071164:intron | 50.0% |
| ! | GATGGATCACTCTGGAAGCT+CGG | - | 16932:100883-100902 | MS.gene071164:intron | 50.0% |
| ! | GTAACCGACGGTGTCAACTA+TGG | - | 16932:100331-100350 | MS.gene071164:intron | 50.0% |
| ! | TCCGAGAGTTTTTGCAGGGA+AGG | + | 16932:100169-100188 | MS.gene071164:intergenic | 50.0% |
| ACATGCCATCTCCGGTCAAG+CGG | + | 16932:100952-100971 | MS.gene071164:intergenic | 55.0% | |
| ATGCTGATCCGTTAGCCGGA+GGG | + | 16932:100206-100225 | MS.gene071164:intergenic | 55.0% | |
| GAGAAACTCCCTCCGGCTAA+CGG | - | 16932:100195-100214 | MS.gene071164:intron | 55.0% | |
| TCGGGTCCAACATACCCTTC+TGG | - | 16932:98242-98261 | MS.gene071164:CDS | 55.0% | |
| AATGACCACGCGCATGCCTG+TGG | + | 16932:100781-100800 | MS.gene071164:intergenic | 60.0% | |
| CAGGCATGCGCGTGGTCATT+AGG | - | 16932:100781-100800 | MS.gene071164:intron | 60.0% | |
| CCATCTCCGGTCAAGCGGTT+CGG | + | 16932:100947-100966 | MS.gene071164:intergenic | 60.0% | |
| GATGCTGATCCGTTAGCCGG+AGG | + | 16932:100207-100226 | MS.gene071164:intergenic | 60.0% | |
| GTTTGGCCGAACCGCTTGAC+CGG | - | 16932:100938-100957 | MS.gene071164:intron | 60.0% | |
| TTGATCCACAGGCATGCGCG+TGG | - | 16932:100773-100792 | MS.gene071164:intron | 60.0% | |
| ! | AGTTTCGGCGCCCGATTCGA+CGG | - | 16932:98130-98149 | MS.gene071164:CDS | 60.0% |
| !! | TCGAATCGGGCGCCGAAACT+CGG | + | 16932:98130-98149 | MS.gene071164:intergenic | 60.0% |
| CCGAACCGCTTGACCGGAGA+TGG | - | 16932:100944-100963 | MS.gene071164:intron | 65.0% | |
| ! | GGCGTCGGGCTGCCGAGTTT+CGG | - | 16932:98115-98134 | MS.gene071164:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16932 | gene | 98102 | 101149 | 98102 | ID=MS.gene071164 |
| 16932 | mRNA | 98102 | 101149 | 98102 | ID=MS.gene071164.t1;Parent=MS.gene071164 |
| 16932 | exon | 100988 | 101149 | 100988 | ID=MS.gene071164.t1.exon1;Parent=MS.gene071164.t1 |
| 16932 | CDS | 100988 | 101149 | 100988 | ID=cds.MS.gene071164.t1;Parent=MS.gene071164.t1 |
| 16932 | exon | 98102 | 99556 | 98102 | ID=MS.gene071164.t1.exon2;Parent=MS.gene071164.t1 |
| 16932 | CDS | 98102 | 99556 | 98102 | ID=cds.MS.gene071164.t1;Parent=MS.gene071164.t1 |
| Gene Sequence |
| Protein sequence |
