Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071165.t1 | XP_024632083.1 | 97.6 | 535 | 13 | 0 | 1 | 535 | 1 | 535 | 1.70E-305 | 1057.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071165.t1 | Q949Q1 | 72.3 | 534 | 146 | 1 | 1 | 532 | 1 | 534 | 1.7e-229 | 796.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071165.t1 | A0A396J7Q2 | 97.6 | 535 | 13 | 0 | 1 | 535 | 1 | 535 | 1.2e-305 | 1057.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052611 | MS.gene071165 | 0.818812 | 1.61E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071165.t1 | MTR_2g461670 | 93.385 | 514 | 26 | 1 | 22 | 535 | 85 | 590 | 0.0 | 984 |
| MS.gene071165.t1 | MTR_4g109890 | 78.879 | 535 | 113 | 0 | 1 | 535 | 1 | 535 | 0.0 | 905 |
| MS.gene071165.t1 | MTR_2g015550 | 53.745 | 534 | 241 | 5 | 1 | 532 | 1 | 530 | 0.0 | 612 |
| MS.gene071165.t1 | MTR_2g006790 | 48.037 | 535 | 246 | 7 | 1 | 532 | 1 | 506 | 0.0 | 520 |
| MS.gene071165.t1 | MTR_2g027740 | 44.960 | 496 | 260 | 5 | 46 | 534 | 176 | 665 | 7.29e-154 | 455 |
| MS.gene071165.t1 | MTR_7g075840 | 47.312 | 465 | 237 | 5 | 73 | 534 | 203 | 662 | 5.33e-147 | 437 |
| MS.gene071165.t1 | MTR_3g107930 | 46.841 | 459 | 234 | 4 | 81 | 534 | 133 | 586 | 1.87e-145 | 431 |
| MS.gene071165.t1 | MTR_8g092000 | 45.474 | 464 | 244 | 5 | 73 | 535 | 124 | 579 | 8.79e-145 | 429 |
| MS.gene071165.t1 | MTR_3g107930 | 46.767 | 464 | 227 | 5 | 81 | 534 | 210 | 663 | 1.34e-144 | 431 |
| MS.gene071165.t1 | MTR_8g033360 | 45.727 | 433 | 225 | 4 | 73 | 500 | 170 | 597 | 3.41e-132 | 401 |
| MS.gene071165.t1 | MTR_7g055600 | 46.117 | 412 | 212 | 5 | 130 | 535 | 26 | 433 | 4.75e-125 | 373 |
| MS.gene071165.t1 | MTR_7g057530 | 46.117 | 412 | 212 | 5 | 130 | 535 | 26 | 433 | 4.75e-125 | 373 |
| MS.gene071165.t1 | MTR_6g016380 | 44.039 | 411 | 221 | 5 | 130 | 535 | 148 | 554 | 6.80e-117 | 357 |
| MS.gene071165.t1 | MTR_7g096160 | 36.876 | 461 | 255 | 7 | 80 | 534 | 222 | 652 | 4.39e-98 | 311 |
| MS.gene071165.t1 | MTR_2g082650 | 37.805 | 410 | 236 | 5 | 144 | 534 | 1 | 410 | 6.31e-98 | 303 |
| MS.gene071165.t1 | MTR_2g082650 | 38.333 | 420 | 236 | 7 | 136 | 534 | 122 | 539 | 1.39e-97 | 306 |
| MS.gene071165.t1 | MTR_7g012370 | 36.296 | 405 | 239 | 6 | 139 | 524 | 121 | 525 | 2.56e-93 | 295 |
| MS.gene071165.t1 | MTR_4g133570 | 37.073 | 410 | 237 | 5 | 146 | 534 | 53 | 462 | 2.34e-92 | 290 |
| MS.gene071165.t1 | MTR_6g013840 | 36.627 | 415 | 244 | 6 | 139 | 534 | 116 | 530 | 6.25e-87 | 278 |
| MS.gene071165.t1 | MTR_3g452360 | 36.782 | 435 | 249 | 11 | 118 | 534 | 102 | 528 | 7.97e-86 | 275 |
| MS.gene071165.t1 | MTR_3g452360 | 38.961 | 385 | 211 | 9 | 168 | 534 | 1 | 379 | 3.93e-85 | 269 |
| MS.gene071165.t1 | MTR_1g070490 | 33.202 | 509 | 284 | 14 | 46 | 535 | 127 | 598 | 7.84e-80 | 262 |
| MS.gene071165.t1 | MTR_7g012370 | 33.645 | 321 | 196 | 5 | 139 | 442 | 121 | 441 | 1.03e-62 | 213 |
| MS.gene071165.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 79 | 534 | 122 | 563 | 3.42e-56 | 197 |
| MS.gene071165.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 79 | 534 | 162 | 603 | 3.86e-56 | 198 |
| MS.gene071165.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 79 | 534 | 182 | 623 | 4.15e-56 | 199 |
| MS.gene071165.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 79 | 534 | 182 | 623 | 4.64e-56 | 198 |
| MS.gene071165.t1 | MTR_7g074680 | 30.753 | 465 | 290 | 10 | 79 | 534 | 202 | 643 | 5.97e-56 | 199 |
| MS.gene071165.t1 | MTR_7g074680 | 34.140 | 372 | 220 | 7 | 169 | 534 | 308 | 660 | 2.61e-54 | 194 |
| MS.gene071165.t1 | MTR_4g133942 | 49.749 | 199 | 70 | 3 | 339 | 534 | 161 | 332 | 9.42e-51 | 177 |
| MS.gene071165.t1 | MTR_3g092310 | 31.937 | 191 | 120 | 5 | 340 | 521 | 140 | 329 | 7.17e-25 | 106 |
| MS.gene071165.t1 | MTR_7g109210 | 32.065 | 184 | 118 | 4 | 340 | 517 | 159 | 341 | 8.03e-25 | 106 |
| MS.gene071165.t1 | MTR_5g036580 | 34.031 | 191 | 117 | 6 | 340 | 521 | 166 | 356 | 1.36e-24 | 106 |
| MS.gene071165.t1 | MTR_6g008900 | 34.239 | 184 | 109 | 6 | 340 | 513 | 165 | 346 | 4.82e-24 | 104 |
| MS.gene071165.t1 | MTR_4g071620 | 34.239 | 184 | 109 | 6 | 340 | 513 | 165 | 346 | 4.82e-24 | 104 |
| MS.gene071165.t1 | MTR_8g078240 | 34.021 | 194 | 115 | 6 | 340 | 521 | 142 | 334 | 7.26e-24 | 103 |
| MS.gene071165.t1 | MTR_3g111600 | 34.031 | 191 | 117 | 5 | 340 | 521 | 80 | 270 | 1.31e-23 | 101 |
| MS.gene071165.t1 | MTR_4g118030 | 31.073 | 177 | 114 | 5 | 340 | 509 | 145 | 320 | 1.40e-22 | 99.4 |
| MS.gene071165.t1 | MTR_1g021855 | 33.679 | 193 | 116 | 6 | 340 | 521 | 165 | 356 | 6.42e-22 | 97.8 |
| MS.gene071165.t1 | MTR_7g094230 | 28.509 | 228 | 151 | 5 | 294 | 510 | 100 | 326 | 1.23e-21 | 96.7 |
| MS.gene071165.t1 | MTR_5g019220 | 32.673 | 202 | 125 | 6 | 340 | 531 | 166 | 366 | 3.61e-21 | 95.5 |
| MS.gene071165.t1 | MTR_1g089820 | 30.000 | 180 | 119 | 4 | 340 | 513 | 154 | 332 | 5.60e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071165.t1 | AT1G18580 | 72.797 | 522 | 140 | 1 | 16 | 535 | 16 | 537 | 0.0 | 805 |
| MS.gene071165.t1 | AT2G20810 | 51.769 | 537 | 250 | 8 | 1 | 532 | 1 | 533 | 0.0 | 568 |
| MS.gene071165.t1 | AT5G47780 | 46.482 | 469 | 245 | 4 | 68 | 535 | 152 | 615 | 6.92e-156 | 459 |
| MS.gene071165.t1 | AT3G61130 | 47.495 | 459 | 232 | 5 | 79 | 534 | 219 | 671 | 9.07e-153 | 452 |
| MS.gene071165.t1 | AT4G38270 | 44.820 | 473 | 249 | 7 | 70 | 534 | 210 | 678 | 4.93e-141 | 423 |
| MS.gene071165.t1 | AT4G38270 | 44.820 | 473 | 249 | 7 | 70 | 534 | 206 | 674 | 5.39e-141 | 422 |
| MS.gene071165.t1 | AT3G25140 | 47.330 | 412 | 207 | 5 | 130 | 535 | 151 | 558 | 3.93e-133 | 398 |
| MS.gene071165.t1 | AT2G46480 | 44.181 | 464 | 241 | 4 | 79 | 534 | 85 | 538 | 1.04e-132 | 397 |
| MS.gene071165.t1 | AT2G46480 | 44.181 | 464 | 241 | 4 | 79 | 534 | 98 | 551 | 1.78e-132 | 396 |
| MS.gene071165.t1 | AT2G46480 | 40.948 | 464 | 231 | 5 | 79 | 534 | 85 | 513 | 3.36e-117 | 356 |
| MS.gene071165.t1 | AT2G46480 | 40.948 | 464 | 231 | 5 | 79 | 534 | 98 | 526 | 6.79e-117 | 355 |
| MS.gene071165.t1 | AT3G02350 | 41.509 | 477 | 255 | 8 | 79 | 535 | 88 | 560 | 5.17e-115 | 352 |
| MS.gene071165.t1 | AT2G30575 | 35.792 | 461 | 263 | 5 | 79 | 534 | 176 | 608 | 7.68e-100 | 314 |
| MS.gene071165.t1 | AT5G54690 | 38.931 | 393 | 221 | 5 | 161 | 534 | 140 | 532 | 9.25e-98 | 306 |
| MS.gene071165.t1 | AT3G01040 | 37.831 | 415 | 239 | 5 | 139 | 534 | 116 | 530 | 6.26e-96 | 301 |
| MS.gene071165.t1 | AT3G01040 | 37.831 | 415 | 239 | 5 | 139 | 534 | 116 | 530 | 6.26e-96 | 301 |
| MS.gene071165.t1 | AT5G15470 | 38.072 | 415 | 238 | 5 | 139 | 534 | 116 | 530 | 2.71e-94 | 297 |
| MS.gene071165.t1 | AT1G06780 | 34.348 | 460 | 274 | 6 | 78 | 534 | 153 | 587 | 2.09e-92 | 294 |
| MS.gene071165.t1 | AT1G06780 | 34.348 | 460 | 274 | 6 | 78 | 534 | 166 | 600 | 4.64e-92 | 293 |
| MS.gene071165.t1 | AT3G01040 | 36.386 | 404 | 227 | 6 | 139 | 534 | 116 | 497 | 3.14e-85 | 273 |
| MS.gene071165.t1 | AT3G58790 | 38.107 | 412 | 229 | 10 | 143 | 534 | 1 | 406 | 8.34e-83 | 263 |
| MS.gene071165.t1 | AT3G58790 | 36.534 | 427 | 249 | 8 | 128 | 534 | 114 | 538 | 5.40e-82 | 266 |
| MS.gene071165.t1 | AT2G38650 | 31.808 | 459 | 290 | 9 | 79 | 535 | 181 | 618 | 9.29e-66 | 224 |
| MS.gene071165.t1 | AT2G38650 | 31.808 | 459 | 290 | 9 | 79 | 535 | 181 | 618 | 9.29e-66 | 224 |
| MS.gene071165.t1 | AT2G38650 | 31.707 | 369 | 227 | 10 | 79 | 444 | 181 | 527 | 3.70e-42 | 159 |
| MS.gene071165.t1 | AT3G28340 | 28.824 | 340 | 190 | 13 | 202 | 521 | 39 | 346 | 1.35e-27 | 114 |
| MS.gene071165.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 340 | 521 | 169 | 359 | 1.36e-24 | 106 |
| MS.gene071165.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 340 | 521 | 169 | 359 | 1.36e-24 | 106 |
| MS.gene071165.t1 | AT3G62660 | 31.122 | 196 | 125 | 5 | 340 | 526 | 164 | 358 | 3.28e-24 | 104 |
| MS.gene071165.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 340 | 521 | 150 | 339 | 4.80e-24 | 103 |
| MS.gene071165.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 340 | 521 | 150 | 339 | 4.80e-24 | 103 |
| MS.gene071165.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 340 | 521 | 150 | 339 | 4.80e-24 | 103 |
| MS.gene071165.t1 | AT1G24170 | 34.375 | 192 | 115 | 7 | 340 | 521 | 172 | 362 | 2.57e-23 | 102 |
| MS.gene071165.t1 | AT1G19300 | 32.292 | 192 | 119 | 6 | 340 | 521 | 150 | 340 | 1.14e-22 | 99.8 |
| MS.gene071165.t1 | AT3G06260 | 31.818 | 176 | 113 | 4 | 340 | 509 | 150 | 324 | 1.79e-22 | 99.4 |
| MS.gene071165.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 340 | 521 | 165 | 354 | 9.51e-22 | 97.4 |
| MS.gene071165.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 340 | 521 | 165 | 354 | 9.51e-22 | 97.4 |
| MS.gene071165.t1 | AT3G50760 | 31.915 | 188 | 117 | 5 | 340 | 517 | 136 | 322 | 2.75e-20 | 92.8 |
| MS.gene071165.t1 | AT1G13250 | 33.508 | 191 | 117 | 5 | 340 | 521 | 144 | 333 | 5.26e-20 | 92.0 |
| MS.gene071165.t1 | AT1G74088 | 51.899 | 79 | 31 | 1 | 151 | 229 | 26 | 97 | 4.83e-18 | 80.1 |
| MS.gene071165.t1 | AT1G74088 | 50.000 | 72 | 29 | 1 | 158 | 229 | 1 | 65 | 1.82e-14 | 68.6 |
Find 0 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGAAAAACTAATTTTAT+TGG | + | 16937:8577-8596 | None:intergenic | 10.0% |
| !! | ACATTAATTTAAATCTTGAT+TGG | + | 16937:6566-6585 | None:intergenic | 15.0% |
| !! | GTTTAGTAATAACAAAAATT+TGG | + | 16937:8812-8831 | None:intergenic | 15.0% |
| !! | TAAATTTCAATTCATTTATC+AGG | - | 16937:6612-6631 | MS.gene071165:CDS | 15.0% |
| !!! | CTTATAATTTTTGTTATAAG+TGG | - | 16937:6951-6970 | MS.gene071165:CDS | 15.0% |
| !! | AAATGTATTTACTCCAAATT+TGG | + | 16937:6720-6739 | None:intergenic | 20.0% |
| !! | AATCATGTTCTTTAACATTA+GGG | - | 16937:7109-7128 | MS.gene071165:CDS | 20.0% |
| !! | GTTCAGATTCATAATAAAAA+AGG | + | 16937:7082-7101 | None:intergenic | 20.0% |
| !!! | AAGATTTCTTGTTGTAAAAA+TGG | - | 16937:7162-7181 | MS.gene071165:CDS | 20.0% |
| !!! | GTAAATTCTACAACAATTTT+AGG | - | 16937:7804-7823 | MS.gene071165:CDS | 20.0% |
| !!! | TAGTATATAATTTGTGTTTC+TGG | - | 16937:7650-7669 | MS.gene071165:CDS | 20.0% |
| ! | AACATAATTACCATCAAGAT+CGG | - | 16937:6490-6509 | MS.gene071165:CDS | 25.0% |
| ! | AACTTGTCAAATGAACTAAA+TGG | + | 16937:7391-7410 | None:intergenic | 25.0% |
| ! | AATAACAATTTGATGTGAGA+GGG | - | 16937:6812-6831 | MS.gene071165:CDS | 25.0% |
| ! | AATGAAATTCTTCAACATTC+TGG | + | 16937:8678-8697 | None:intergenic | 25.0% |
| ! | ACTTGTCAAATGAACTAAAT+GGG | + | 16937:7390-7409 | None:intergenic | 25.0% |
| ! | AGAATGTAATATTACCAGAA+GGG | + | 16937:6526-6545 | None:intergenic | 25.0% |
| ! | AGAATGTTGAAGAATTTCAT+TGG | - | 16937:8677-8696 | MS.gene071165:intron | 25.0% |
| ! | ATAGCACATTCTTGAATATA+AGG | + | 16937:9390-9409 | None:intergenic | 25.0% |
| ! | ATCATGTTCTTTAACATTAG+GGG | - | 16937:7110-7129 | MS.gene071165:CDS | 25.0% |
| ! | CAATCATGTTCTTTAACATT+AGG | - | 16937:7108-7127 | MS.gene071165:CDS | 25.0% |
| ! | CGCAAAATCATGAATTTAAA+TGG | + | 16937:7041-7060 | None:intergenic | 25.0% |
| ! | TAGCACATTCTTGAATATAA+GGG | + | 16937:9389-9408 | None:intergenic | 25.0% |
| ! | TATATTCAAGAATGTGCTAT+AGG | - | 16937:9390-9409 | MS.gene071165:CDS | 25.0% |
| ! | TCTTGAAATCTTCATGAATA+TGG | - | 16937:7590-7609 | MS.gene071165:CDS | 25.0% |
| ! | TGTTATTACTAAACCATCTT+CGG | - | 16937:8818-8837 | MS.gene071165:intron | 25.0% |
| ! | TTAAAGAACATGATTGAAAC+TGG | + | 16937:7104-7123 | None:intergenic | 25.0% |
| ! | TTGAAAAGAGTAAAAAAGAG+AGG | + | 16937:6794-6813 | None:intergenic | 25.0% |
| ! | TTTCAATTCATTTATCAGGA+TGG | - | 16937:6616-6635 | MS.gene071165:CDS | 25.0% |
| ! | TTTCTCAGTTATGACTTTAA+AGG | - | 16937:8637-8656 | MS.gene071165:intron | 25.0% |
| !! | AAAGGATGAAAATTTTCCTA+AGG | - | 16937:7973-7992 | MS.gene071165:intron | 25.0% |
| !! | ATATCATTTCTGCATCTTTT+CGG | - | 16937:8495-8514 | MS.gene071165:intron | 25.0% |
| !! | ATGAAAATTTTCCTAAGGAT+AGG | - | 16937:7978-7997 | MS.gene071165:intron | 25.0% |
| !!! | ACTTCTTAGTTTTTATGGTT+TGG | - | 16937:9188-9207 | MS.gene071165:intron | 25.0% |
| !!! | ATGTTTTTGACTTGATTCAA+TGG | - | 16937:9076-9095 | MS.gene071165:intron | 25.0% |
| !!! | ATTTTGTCTGTATTTAAGAC+TGG | - | 16937:6743-6762 | MS.gene071165:CDS | 25.0% |
| !!! | GAGACAAAAATAGTTTTAAC+AGG | + | 16937:7900-7919 | None:intergenic | 25.0% |
| !!! | TCTACAACAATTTTAGGATT+AGG | - | 16937:7810-7829 | MS.gene071165:CDS | 25.0% |
| AAATGTACTTGGTCCAAATT+TGG | - | 16937:6704-6723 | MS.gene071165:CDS | 30.0% | |
| ACATAATTACCATCAAGATC+GGG | - | 16937:6491-6510 | MS.gene071165:CDS | 30.0% | |
| AGTTGTAACACAATCTAGAA+AGG | + | 16937:7457-7476 | None:intergenic | 30.0% | |
| ATGTGAAACTTACTTCTGAT+TGG | - | 16937:8401-8420 | MS.gene071165:intron | 30.0% | |
| CAATAACAATTTGATGTGAG+AGG | - | 16937:6811-6830 | MS.gene071165:CDS | 30.0% | |
| CAGAAGAAAATCAGAAACTA+TGG | + | 16937:7339-7358 | None:intergenic | 30.0% | |
| CCTTGAAGATTAAAGTTGAA+AGG | + | 16937:8228-8247 | None:intergenic | 30.0% | |
| CCTTTCAACTTTAATCTTCA+AGG | - | 16937:8225-8244 | MS.gene071165:intron | 30.0% | |
| CTCCTTCATATTAAAGCAAA+AGG | - | 16937:6679-6698 | MS.gene071165:CDS | 30.0% | |
| CTTATAGATAATCTCAACCA+TGG | + | 16937:9324-9343 | None:intergenic | 30.0% | |
| CTTGTCAAATGAACTAAATG+GGG | + | 16937:7389-7408 | None:intergenic | 30.0% | |
| GAGAATGTAATATTACCAGA+AGG | + | 16937:6527-6546 | None:intergenic | 30.0% | |
| GATTATCTATAAGCAGGTAT+AGG | - | 16937:9331-9350 | MS.gene071165:CDS | 30.0% | |
| GTTGAAAGGCTTCTTATAAT+CGG | + | 16937:8214-8233 | None:intergenic | 30.0% | |
| TAACGTGTTTGCTCAAATAT+CGG | - | 16937:8345-8364 | MS.gene071165:intron | 30.0% | |
| TAGTTGTTGCAATGTCATAA+TGG | + | 16937:8261-8280 | None:intergenic | 30.0% | |
| TTGCCAATAGTGATATATTG+CGG | + | 16937:9118-9137 | None:intergenic | 30.0% | |
| TTGTCAAATGAACTAAATGG+GGG | + | 16937:7388-7407 | None:intergenic | 30.0% | |
| TTGTTACTACTTTGTGAAAC+AGG | - | 16937:7202-7221 | MS.gene071165:CDS | 30.0% | |
| TTTATGTACTTGTTCCATAG+TGG | + | 16937:9357-9376 | None:intergenic | 30.0% | |
| ! | AAAACAATCTTCTCAAGTTG+TGG | + | 16937:8865-8884 | None:intergenic | 30.0% |
| ! | GACCTTTTGCTTTAATATGA+AGG | + | 16937:6684-6703 | None:intergenic | 30.0% |
| ! | GTTTTTCATATTGTAACCGA+CGG | - | 16937:8586-8605 | MS.gene071165:intron | 30.0% |
| !! | ATAGAAGTGCTGTAATAATG+AGG | + | 16937:7518-7537 | None:intergenic | 30.0% |
| !! | GTTGTTACTTGTTACACTTT+TGG | - | 16937:7860-7879 | MS.gene071165:intron | 30.0% |
| !! | TAGAAGTGCTGTAATAATGA+GGG | + | 16937:7517-7536 | None:intergenic | 30.0% |
| !!! | AATCTCGAGCCTTTTATTTT+GGG | - | 16937:8746-8765 | MS.gene071165:intron | 30.0% |
| !!! | TTTTTCAAGGCAATTAACAG+AGG | - | 16937:8036-8055 | MS.gene071165:intron | 30.0% |
| AAGGCAATTAACAGAGGAAA+TGG | - | 16937:8042-8061 | MS.gene071165:intron | 35.0% | |
| AAGGCTTCTTATAATCGGTT+CGG | + | 16937:8209-8228 | None:intergenic | 35.0% | |
| ACAATAATCTTCACCTAGCA+TGG | - | 16937:8101-8120 | MS.gene071165:intron | 35.0% | |
| AGCAAAAGGTCAAATGTACT+TGG | - | 16937:6693-6712 | MS.gene071165:CDS | 35.0% | |
| AGTTGAGTAATTGTCATTCG+AGG | - | 16937:7685-7704 | MS.gene071165:CDS | 35.0% | |
| CAAGTTGTGGATAAATCTCA+GGG | + | 16937:8852-8871 | None:intergenic | 35.0% | |
| CAATAATCTTCACCTAGCAT+GGG | - | 16937:8102-8121 | MS.gene071165:intron | 35.0% | |
| GAATTGCATGGAAACGTAAT+CGG | - | 16937:8937-8956 | MS.gene071165:intron | 35.0% | |
| GGTTGAGATTATCTATAAGC+AGG | - | 16937:9325-9344 | MS.gene071165:CDS | 35.0% | |
| GTAAAATTCAGCCTATCCTT+AGG | + | 16937:7992-8011 | None:intergenic | 35.0% | |
| GTATAACCATTTCGCAGAAT+GGG | + | 16937:7291-7310 | None:intergenic | 35.0% | |
| TGACCGCAATATATCACTAT+TGG | - | 16937:9112-9131 | MS.gene071165:intron | 35.0% | |
| TGAGTCGATTATCGATATTG+AGG | + | 16937:9260-9279 | None:intergenic | 35.0% | |
| TGCAATTCAAGTGAGAAAAG+TGG | + | 16937:8925-8944 | None:intergenic | 35.0% | |
| TGTAAGCAATGAAGACTCTT+CGG | + | 16937:8382-8401 | None:intergenic | 35.0% | |
| TGTTGTTGCAAGACTGAAAA+GGG | + | 16937:7549-7568 | None:intergenic | 35.0% | |
| TTTCAGTCTTGCAACAACAA+TGG | - | 16937:7550-7569 | MS.gene071165:CDS | 35.0% | |
| ! | ATATTACCAGAAGGGTATGT+TGG | + | 16937:6518-6537 | None:intergenic | 35.0% |
| ! | CATCTTTTCGGATAATGTAC+TGG | - | 16937:8507-8526 | MS.gene071165:intron | 35.0% |
| ! | CCATAAAAACTAAGAAGTGC+AGG | + | 16937:9186-9205 | None:intergenic | 35.0% |
| ! | CTTTTCTCACTTGAATTGCA+TGG | - | 16937:8925-8944 | MS.gene071165:intron | 35.0% |
| ! | TAAAAACTAAGAAGTGCAGG+AGG | + | 16937:9183-9202 | None:intergenic | 35.0% |
| ! | TAATCGACTCATTGAAAGTG+CGG | - | 16937:9269-9288 | MS.gene071165:CDS | 35.0% |
| ! | TATGGGATCTGTTTTCTTCT+TGG | - | 16937:6429-6448 | MS.gene071165:CDS | 35.0% |
| ! | TCAAGTTGTGGATAAATCTC+AGG | + | 16937:8853-8872 | None:intergenic | 35.0% |
| ! | TGTCTGTATTTAAGACTGGA+TGG | - | 16937:6747-6766 | MS.gene071165:CDS | 35.0% |
| ! | TGTTACCTTTTGCAGCTATT+AGG | - | 16937:7232-7251 | MS.gene071165:CDS | 35.0% |
| ! | TTGTTGTTGCAAGACTGAAA+AGG | + | 16937:7550-7569 | None:intergenic | 35.0% |
| !! | AAAGTGGTGTTAGGTCTTTT+TGG | + | 16937:8909-8928 | None:intergenic | 35.0% |
| !! | CCTGCACTTCTTAGTTTTTA+TGG | - | 16937:9183-9202 | MS.gene071165:intron | 35.0% |
| !! | GAATCTCGAGCCTTTTATTT+TGG | - | 16937:8745-8764 | MS.gene071165:intron | 35.0% |
| !! | TAAGTGCGACATCTTTTTCA+AGG | - | 16937:8023-8042 | MS.gene071165:intron | 35.0% |
| !!! | AGATGGCATGTTTTAGGATT+AGG | - | 16937:9228-9247 | MS.gene071165:intron | 35.0% |
| !!! | ATCTCGAGCCTTTTATTTTG+GGG | - | 16937:8747-8766 | MS.gene071165:intron | 35.0% |
| !!! | CTTTTATTTTGGGGCATATC+CGG | - | 16937:8756-8775 | MS.gene071165:intron | 35.0% |
| AAACTATGGCAGATCCTACA+AGG | + | 16937:7325-7344 | None:intergenic | 40.0% | |
| AAATAGTGACGTGGGAAACA+TGG | - | 16937:7711-7730 | MS.gene071165:CDS | 40.0% | |
| AAGCTCAAAGTTTGATCCAC+AGG | - | 16937:9029-9048 | MS.gene071165:intron | 40.0% | |
| ATCCTAAAACATGCCATCTC+CGG | + | 16937:9227-9246 | None:intergenic | 40.0% | |
| ATCCTACAAGGAATTGCGAA+CGG | + | 16937:7313-7332 | None:intergenic | 40.0% | |
| ATTCGACGGAAGTTGTCTTA+TGG | - | 16937:6411-6430 | MS.gene071165:CDS | 40.0% | |
| ATTGCAGGACAGGAATACAA+AGG | - | 16937:7955-7974 | MS.gene071165:intron | 40.0% | |
| CAAGTGAGAAAAGTGGTGTT+AGG | + | 16937:8918-8937 | None:intergenic | 40.0% | |
| CGGATATGCCCCAAAATAAA+AGG | + | 16937:8758-8777 | None:intergenic | 40.0% | |
| CGGCTGTTATTCACTTCAAT+GGG | - | 16937:9289-9308 | MS.gene071165:CDS | 40.0% | |
| GAACACCTAATAGCTGCAAA+AGG | + | 16937:7240-7259 | None:intergenic | 40.0% | |
| GGGTTTGAATTCATACAGAG+AGG | - | 16937:7130-7149 | MS.gene071165:CDS | 40.0% | |
| GGTATAACCATTTCGCAGAA+TGG | + | 16937:7292-7311 | None:intergenic | 40.0% | |
| TAAATGCTGAACCGAAACTG+CGG | - | 16937:8782-8801 | MS.gene071165:intron | 40.0% | |
| TAAGACAACTTCCGTCGAAT+CGG | + | 16937:6411-6430 | None:intergenic | 40.0% | |
| TAAGTGACATATTGCAGGAC+AGG | - | 16937:7945-7964 | MS.gene071165:intron | 40.0% | |
| TCAATGGGAACATGAAACCA+TGG | - | 16937:9304-9323 | MS.gene071165:CDS | 40.0% | |
| TGCAATAACCACATAAGCCT+TGG | + | 16937:8074-8093 | None:intergenic | 40.0% | |
| TTCGACGGAAGTTGTCTTAT+GGG | - | 16937:6412-6431 | MS.gene071165:CDS | 40.0% | |
| TTCGGTTCAGCATTTACATC+CGG | + | 16937:8778-8797 | None:intergenic | 40.0% | |
| ! | AATTTGGAGTTCCGCAGTTT+CGG | + | 16937:8796-8815 | None:intergenic | 40.0% |
| ! | CCTGCAATATGTCACTTACT+CGG | + | 16937:7943-7962 | None:intergenic | 40.0% |
| ! | CTTTAAAGGAGCAACGATAG+AGG | - | 16937:8651-8670 | MS.gene071165:intron | 40.0% |
| ! | GATTGGTCGCATCTGATAAA+GGG | + | 16937:6549-6568 | None:intergenic | 40.0% |
| ! | GGATAATGTACTGGCAACAT+TGG | - | 16937:8516-8535 | MS.gene071165:intron | 40.0% |
| ! | TGATTGGTCGCATCTGATAA+AGG | + | 16937:6550-6569 | None:intergenic | 40.0% |
| !! | AGCATTTTCTGTTGTCGGTT+TGG | - | 16937:6452-6471 | MS.gene071165:CDS | 40.0% |
| !! | CTTGGAGCATTTTCTGTTGT+CGG | - | 16937:6447-6466 | MS.gene071165:CDS | 40.0% |
| !! | TTCTGTTGTCGGTTTGGTTA+TGG | - | 16937:6458-6477 | MS.gene071165:CDS | 40.0% |
| AAGACAACTTCCGTCGAATC+GGG | + | 16937:6410-6429 | None:intergenic | 45.0% | |
| ACCAAGACAAGTCTAACTGC+AGG | + | 16937:6896-6915 | None:intergenic | 45.0% | |
| ACCTTCCCTGCAAAAACTCT+CGG | - | 16937:8432-8451 | MS.gene071165:intron | 45.0% | |
| ACTATGGAACGATGCAAGCA+TGG | - | 16937:8614-8633 | MS.gene071165:intron | 45.0% | |
| AGAGGAAATGGTTCTTGCCA+AGG | - | 16937:8054-8073 | MS.gene071165:intron | 45.0% | |
| ATAGATGCTGATCCGTTAGC+CGG | + | 16937:8477-8496 | None:intergenic | 45.0% | |
| CAGGGATGTAAAACCGAAGA+TGG | + | 16937:8834-8853 | None:intergenic | 45.0% | |
| CCGAGTAAGTGACATATTGC+AGG | - | 16937:7940-7959 | MS.gene071165:intron | 45.0% | |
| CCTGTGAAATGCTTCAAGAC+AGG | + | 16937:8974-8993 | None:intergenic | 45.0% | |
| CGAGGCTTAAATAGTGACGT+GGG | - | 16937:7703-7722 | MS.gene071165:CDS | 45.0% | |
| GACTGGAAAGCCTGTTAACA+AGG | - | 16937:8177-8196 | MS.gene071165:intron | 45.0% | |
| GCGGCTGTTATTCACTTCAA+TGG | - | 16937:9288-9307 | MS.gene071165:CDS | 45.0% | |
| GGACAACAACATCGTCATCA+AGG | + | 16937:8888-8907 | None:intergenic | 45.0% | |
| GTTAACAGGCTTTCCAGTCA+TGG | + | 16937:8176-8195 | None:intergenic | 45.0% | |
| TAAGCAGGTATAGGCCACTA+TGG | - | 16937:9340-9359 | MS.gene071165:CDS | 45.0% | |
| TACCGTTCGCAATTCCTTGT+AGG | - | 16937:7308-7327 | MS.gene071165:CDS | 45.0% | |
| TATGTTGGACCCGATCTTGA+TGG | + | 16937:6503-6522 | None:intergenic | 45.0% | |
| TCCTGCAGTTAGACTTGTCT+TGG | - | 16937:6892-6911 | MS.gene071165:CDS | 45.0% | |
| TCGAGCAGCTGTTTGACAAT+CGG | + | 16937:8721-8740 | None:intergenic | 45.0% | |
| TCGAGGCTTAAATAGTGACG+TGG | - | 16937:7702-7721 | MS.gene071165:CDS | 45.0% | |
| TCGGCTTCTTCCTTGTTAAC+AGG | + | 16937:8190-8209 | None:intergenic | 45.0% | |
| TTACTCGGTAAGTACACACG+AGG | + | 16937:7928-7947 | None:intergenic | 45.0% | |
| ! | CCTGTCTTGAAGCATTTCAC+AGG | - | 16937:8971-8990 | MS.gene071165:intron | 45.0% |
| ! | CTCATCCGAGAGTTTTTGCA+GGG | + | 16937:8440-8459 | None:intergenic | 45.0% |
| ! | TCTCATCCGAGAGTTTTTGC+AGG | + | 16937:8441-8460 | None:intergenic | 45.0% |
| AACAGGCTTTCCAGTCATGG+CGG | + | 16937:8173-8192 | None:intergenic | 50.0% | |
| AGAATGCCGATGGATCACTC+TGG | - | 16937:9142-9161 | MS.gene071165:intron | 50.0% | |
| ATGAGACGAGAAACTCCCTC+CGG | - | 16937:8455-8474 | MS.gene071165:intron | 50.0% | |
| CGTTCCATAGTTGACACCGT+CGG | + | 16937:8605-8624 | None:intergenic | 50.0% | |
| CTTTCAAAAGCCGCCATGAC+TGG | - | 16937:8160-8179 | MS.gene071165:intron | 50.0% | |
| GAGCTTCCAGAGTGATCCAT+CGG | + | 16937:9151-9170 | None:intergenic | 50.0% | |
| GCACATCCCATTCTGCGAAA+TGG | - | 16937:7282-7301 | MS.gene071165:CDS | 50.0% | |
| GGTTCTTGCCAAGGCTTATG+TGG | - | 16937:8063-8082 | MS.gene071165:intron | 50.0% | |
| TGGCAAGAGAAGAATGCCGA+TGG | - | 16937:9132-9151 | MS.gene071165:intron | 50.0% | |
| TTGAGCTAAGCTCCCATGCT+AGG | + | 16937:8117-8136 | None:intergenic | 50.0% | |
| ! | GACCGGAGATGGCATGTTTT+AGG | - | 16937:9222-9241 | MS.gene071165:intron | 50.0% |
| ! | GATGGATCACTCTGGAAGCT+CGG | - | 16937:9150-9169 | MS.gene071165:intron | 50.0% |
| ! | GTAACCGACGGTGTCAACTA+TGG | - | 16937:8598-8617 | MS.gene071165:intron | 50.0% |
| ! | TCCGAGAGTTTTTGCAGGGA+AGG | + | 16937:8436-8455 | None:intergenic | 50.0% |
| ACATGCCATCTCCGGTCAAG+CGG | + | 16937:9219-9238 | None:intergenic | 55.0% | |
| ATGCTGATCCGTTAGCCGGA+GGG | + | 16937:8473-8492 | None:intergenic | 55.0% | |
| GAGAAACTCCCTCCGGCTAA+CGG | - | 16937:8462-8481 | MS.gene071165:intron | 55.0% | |
| TCGGGTCCAACATACCCTTC+TGG | - | 16937:6509-6528 | MS.gene071165:CDS | 55.0% | |
| AATGACCACGCGCATGCCTG+TGG | + | 16937:9048-9067 | None:intergenic | 60.0% | |
| CAGGCATGCGCGTGGTCATT+AGG | - | 16937:9048-9067 | MS.gene071165:intron | 60.0% | |
| CCATCTCCGGTCAAGCGGTT+CGG | + | 16937:9214-9233 | None:intergenic | 60.0% | |
| GATGCTGATCCGTTAGCCGG+AGG | + | 16937:8474-8493 | None:intergenic | 60.0% | |
| GTTTGGCCGAACCGCTTGAC+CGG | - | 16937:9205-9224 | MS.gene071165:intron | 60.0% | |
| TTGATCCACAGGCATGCGCG+TGG | - | 16937:9040-9059 | MS.gene071165:intron | 60.0% | |
| ! | AGTTTCGGCGCCCGATTCGA+CGG | - | 16937:6397-6416 | MS.gene071165:CDS | 60.0% |
| !! | TCGAATCGGGCGCCGAAACT+CGG | + | 16937:6397-6416 | None:intergenic | 60.0% |
| CCGAACCGCTTGACCGGAGA+TGG | - | 16937:9211-9230 | MS.gene071165:intron | 65.0% | |
| ! | GGCGTCGGGCTGCCGAGTTT+CGG | - | 16937:6382-6401 | MS.gene071165:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16937 | gene | 6378 | 9416 | 6378 | ID=MS.gene071165 |
| 16937 | mRNA | 6378 | 9416 | 6378 | ID=MS.gene071165.t1;Parent=MS.gene071165 |
| 16937 | exon | 9264 | 9416 | 9264 | ID=MS.gene071165.t1.exon1;Parent=MS.gene071165.t1 |
| 16937 | CDS | 9264 | 9416 | 9264 | ID=cds.MS.gene071165.t1;Parent=MS.gene071165.t1 |
| 16937 | exon | 6378 | 7832 | 6378 | ID=MS.gene071165.t1.exon2;Parent=MS.gene071165.t1 |
| 16937 | CDS | 6378 | 7832 | 6378 | ID=cds.MS.gene071165.t1;Parent=MS.gene071165.t1 |
| Gene Sequence |
| Protein sequence |
