Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07117.t1 | RHN48932.1 | 94.1 | 307 | 16 | 2 | 1 | 306 | 1 | 306 | 3.90E-68 | 268.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07117.t1 | Q84J88 | 59.2 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 2.2e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07117.t1 | G7KRU9 | 94.1 | 307 | 16 | 2 | 1 | 306 | 1 | 306 | 2.8e-68 | 268.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053776 | MS.gene07117 | 0.83626 | 1.04E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07117.t1 | MTR_7g108560 | 95.779 | 308 | 9 | 3 | 1 | 306 | 1 | 306 | 0.0 | 588 |
| MS.gene07117.t1 | MTR_4g119820 | 34.796 | 319 | 146 | 14 | 19 | 306 | 71 | 358 | 7.25e-34 | 127 |
| MS.gene07117.t1 | MTR_1g107565 | 67.606 | 71 | 23 | 0 | 16 | 86 | 7 | 77 | 4.03e-26 | 106 |
| MS.gene07117.t1 | MTR_2g022250 | 67.143 | 70 | 23 | 0 | 17 | 86 | 5 | 74 | 3.11e-24 | 102 |
| MS.gene07117.t1 | MTR_4g117140 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 2.66e-23 | 100 |
| MS.gene07117.t1 | MTR_4g117220 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 3.70e-23 | 99.8 |
| MS.gene07117.t1 | MTR_2g436830 | 57.471 | 87 | 29 | 1 | 2 | 88 | 3 | 81 | 2.36e-22 | 94.7 |
| MS.gene07117.t1 | MTR_1g083310 | 55.056 | 89 | 32 | 2 | 1 | 88 | 1 | 82 | 1.23e-21 | 94.4 |
| MS.gene07117.t1 | MTR_7g113110 | 54.286 | 70 | 32 | 0 | 22 | 91 | 33 | 102 | 3.30e-20 | 90.1 |
| MS.gene07117.t1 | MTR_1g082650 | 57.143 | 70 | 30 | 0 | 17 | 86 | 5 | 74 | 1.65e-19 | 89.0 |
| MS.gene07117.t1 | MTR_2g022240 | 61.429 | 70 | 27 | 0 | 17 | 86 | 5 | 74 | 9.76e-18 | 83.6 |
| MS.gene07117.t1 | MTR_3g067750 | 48.611 | 72 | 37 | 0 | 17 | 88 | 7 | 78 | 9.00e-16 | 75.1 |
| MS.gene07117.t1 | MTR_1g030630 | 43.478 | 69 | 39 | 0 | 22 | 90 | 25 | 93 | 1.48e-14 | 70.1 |
| MS.gene07117.t1 | MTR_4g073040 | 44.444 | 72 | 39 | 1 | 20 | 90 | 26 | 97 | 1.65e-14 | 70.1 |
| MS.gene07117.t1 | MTR_3g087770 | 47.887 | 71 | 37 | 0 | 20 | 90 | 28 | 98 | 2.31e-14 | 69.7 |
| MS.gene07117.t1 | MTR_8g091420 | 47.692 | 65 | 34 | 0 | 26 | 90 | 33 | 97 | 1.99e-13 | 67.0 |
| MS.gene07117.t1 | MTR_5g025150 | 42.424 | 66 | 38 | 0 | 22 | 87 | 23 | 88 | 2.72e-13 | 66.6 |
| MS.gene07117.t1 | MTR_7g013660 | 40.000 | 70 | 42 | 0 | 19 | 88 | 1 | 70 | 4.30e-13 | 65.5 |
| MS.gene07117.t1 | MTR_3g073670 | 33.010 | 103 | 56 | 2 | 26 | 115 | 30 | 132 | 1.68e-12 | 64.3 |
| MS.gene07117.t1 | MTR_1g092670 | 41.892 | 74 | 42 | 1 | 22 | 94 | 4 | 77 | 3.67e-12 | 61.6 |
| MS.gene07117.t1 | MTR_3g117890 | 37.500 | 72 | 44 | 1 | 20 | 90 | 24 | 95 | 5.65e-12 | 63.2 |
| MS.gene07117.t1 | MTR_5g022620 | 35.955 | 89 | 47 | 2 | 20 | 98 | 27 | 115 | 5.56e-11 | 60.5 |
| MS.gene07117.t1 | MTR_7g083060 | 41.429 | 70 | 40 | 1 | 22 | 90 | 24 | 93 | 6.06e-11 | 60.1 |
| MS.gene07117.t1 | MTR_6g026890 | 38.710 | 62 | 38 | 0 | 26 | 87 | 20 | 81 | 7.38e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07117.t1 | AT5G27690 | 59.155 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 5.43e-24 | 100 |
| MS.gene07117.t1 | AT3G06130 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 5.49e-24 | 100 |
| MS.gene07117.t1 | AT3G06130 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 7.13e-24 | 101 |
| MS.gene07117.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 8.12e-23 | 98.6 |
| MS.gene07117.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 8.12e-23 | 98.6 |
| MS.gene07117.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.15e-22 | 98.6 |
| MS.gene07117.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.15e-22 | 98.6 |
| MS.gene07117.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.15e-22 | 98.6 |
| MS.gene07117.t1 | AT1G23000 | 45.455 | 99 | 46 | 1 | 16 | 106 | 7 | 105 | 3.20e-21 | 92.8 |
| MS.gene07117.t1 | AT1G23000 | 45.455 | 99 | 46 | 1 | 16 | 106 | 67 | 165 | 7.01e-21 | 92.4 |
| MS.gene07117.t1 | AT1G56210 | 54.286 | 70 | 32 | 0 | 21 | 90 | 39 | 108 | 8.59e-20 | 89.0 |
| MS.gene07117.t1 | AT3G05220 | 55.714 | 70 | 31 | 0 | 17 | 86 | 5 | 74 | 1.98e-18 | 85.9 |
| MS.gene07117.t1 | AT5G37860 | 48.611 | 72 | 37 | 0 | 22 | 93 | 10 | 81 | 1.68e-15 | 75.5 |
| MS.gene07117.t1 | AT1G71050 | 42.029 | 69 | 40 | 0 | 22 | 90 | 28 | 96 | 2.16e-13 | 67.0 |
| MS.gene07117.t1 | AT3G56240 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.40e-12 | 62.8 |
| MS.gene07117.t1 | AT3G56240 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.40e-12 | 62.8 |
| MS.gene07117.t1 | AT1G06330 | 45.902 | 61 | 33 | 0 | 26 | 86 | 6 | 66 | 4.34e-12 | 63.5 |
| MS.gene07117.t1 | AT4G38580 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.57e-12 | 63.5 |
| MS.gene07117.t1 | AT4G38580 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.57e-12 | 63.5 |
| MS.gene07117.t1 | AT3G56891 | 43.548 | 62 | 35 | 0 | 26 | 87 | 20 | 81 | 1.04e-11 | 62.8 |
| MS.gene07117.t1 | AT3G56891 | 43.103 | 58 | 33 | 0 | 30 | 87 | 1 | 58 | 1.40e-11 | 62.0 |
| MS.gene07117.t1 | AT1G22990 | 41.429 | 70 | 40 | 1 | 22 | 90 | 29 | 98 | 2.42e-11 | 61.2 |
| MS.gene07117.t1 | AT4G08570 | 38.889 | 72 | 43 | 1 | 20 | 90 | 24 | 95 | 2.50e-11 | 61.2 |
| MS.gene07117.t1 | AT5G66110 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 2.67e-11 | 61.2 |
| MS.gene07117.t1 | AT5G66110 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 2.67e-11 | 61.2 |
| MS.gene07117.t1 | AT1G66240 | 38.462 | 65 | 40 | 0 | 22 | 86 | 33 | 97 | 4.15e-11 | 59.3 |
| MS.gene07117.t1 | AT1G22990 | 40.299 | 67 | 39 | 1 | 25 | 90 | 27 | 93 | 4.54e-11 | 60.5 |
Find 72 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGGGTGGAGGAGGTGG+AGG | 0.275287 | 7.1:+5181310 | None:intergenic |
| GCTTCATTAACTCCAAATAA+TGG | 0.285010 | 7.1:-5181607 | MS.gene07117:CDS |
| CAGCACAAGGTTACAGTTAC+TGG | 0.314426 | 7.1:-5181967 | MS.gene07117:CDS |
| AAGAGTCAAGAAAATTCTTC+AGG | 0.319616 | 7.1:-5182708 | MS.gene07117:CDS |
| TGAAACTGAAAATATTAATA+AGG | 0.330846 | 7.1:-5181830 | MS.gene07117:CDS |
| TAGTACATATGTGGTGGATA+TGG | 0.331565 | 7.1:+5181463 | None:intergenic |
| TGTTGATCAGCAGCTGGTTT+GGG | 0.352102 | 7.1:+5182939 | None:intergenic |
| ATTAGAAACACTCAAGTATC+AGG | 0.357551 | 7.1:-5182904 | MS.gene07117:intron |
| ATCAAGAAGCTTTCAAGATC+AGG | 0.368275 | 7.1:-5181922 | MS.gene07117:CDS |
| TTGTTGATCAGCAGCTGGTT+TGG | 0.374527 | 7.1:+5182938 | None:intergenic |
| GGATGAGAGGGTGGAGGAGG+TGG | 0.374539 | 7.1:+5181307 | None:intergenic |
| ATACTTGAGTGTTTCTAATC+CGG | 0.381184 | 7.1:+5182908 | None:intergenic |
| AGCACTTCTTCTTATTATGT+TGG | 0.399672 | 7.1:-5181373 | MS.gene07117:CDS |
| GCTACTGCTGGAGGAGGGTG+TGG | 0.422467 | 7.1:+5181439 | None:intergenic |
| TAAGAAGAAGTGCTAGAAAC+AGG | 0.428358 | 7.1:+5181382 | None:intergenic |
| ATTGTAGCTTTGTCACATAA+TGG | 0.433393 | 7.1:+5181228 | None:intergenic |
| TGATGACCATAGCTGTTGAT+TGG | 0.433870 | 7.1:+5181286 | None:intergenic |
| GGTGGTGCTACTGCTGGAGG+AGG | 0.445055 | 7.1:+5181433 | None:intergenic |
| CCAGCAGTAGCACCACCCTA+TGG | 0.447198 | 7.1:-5181427 | MS.gene07117:CDS |
| ATTGGATGAGAGGGTGGAGG+AGG | 0.450211 | 7.1:+5181304 | None:intergenic |
| GCATGCTGCTGAGGAAGTAC+TGG | 0.452781 | 7.1:+5181493 | None:intergenic |
| GATCACAAAGAAGGTCATAA+TGG | 0.457322 | 7.1:-5181703 | MS.gene07117:CDS |
| ACAGAACAGAAATTGATTCT+CGG | 0.466079 | 7.1:-5181990 | MS.gene07117:CDS |
| GGAGGCATAATAATTTCCTT+AGG | 0.468365 | 7.1:+5181514 | None:intergenic |
| AGTACATATGTGGTGGATAT+GGG | 0.469995 | 7.1:+5181464 | None:intergenic |
| AAAATTCTTCAGGGCATTGA+AGG | 0.479304 | 7.1:-5182698 | MS.gene07117:intron |
| TTAGCATGCATAGGCATGAC+AGG | 0.481965 | 7.1:+5181346 | None:intergenic |
| TACTTGAGTGTTTCTAATCC+GGG | 0.491731 | 7.1:+5182909 | None:intergenic |
| CATAATAATTTCCTTAGGAA+TGG | 0.491755 | 7.1:+5181519 | None:intergenic |
| GGAACTTGTTGATCAGCAGC+TGG | 0.496704 | 7.1:+5182933 | None:intergenic |
| TGTATAGATGATGCAATTGC+AGG | 0.502278 | 7.1:-5181748 | MS.gene07117:CDS |
| CCATAGGGTGGTGCTACTGC+TGG | 0.507340 | 7.1:+5181427 | None:intergenic |
| AAATATTAATAAGGAGATCA+AGG | 0.511134 | 7.1:-5181821 | MS.gene07117:CDS |
| CAGGGAAATCAGTAGAACTT+TGG | 0.517951 | 7.1:-5181903 | MS.gene07117:CDS |
| GAAGATTCAGATCACAAAGA+AGG | 0.518960 | 7.1:-5181712 | MS.gene07117:CDS |
| GAGAGGGTGGAGGAGGTGGA+GGG | 0.528150 | 7.1:+5181311 | None:intergenic |
| TCAAGAAGCTTTCAAGATCA+GGG | 0.538607 | 7.1:-5181921 | MS.gene07117:CDS |
| GATGCAATTGCAGGTGATGA+TGG | 0.539060 | 7.1:-5181739 | MS.gene07117:CDS |
| TAGGGTGGTGCTACTGCTGG+AGG | 0.544543 | 7.1:+5181430 | None:intergenic |
| GTGGTGCTACTGCTGGAGGA+GGG | 0.547041 | 7.1:+5181434 | None:intergenic |
| CAGCAGTAGCACCACCCTAT+GGG | 0.554674 | 7.1:-5181426 | MS.gene07117:CDS |
| TTGATTGGATGAGAGGGTGG+AGG | 0.558090 | 7.1:+5181301 | None:intergenic |
| GATAATAACAATAAAAGTGA+GGG | 0.562957 | 7.1:-5181679 | MS.gene07117:CDS |
| TGTGTTATAGCTTAACCCAT+AGG | 0.565506 | 7.1:+5181411 | None:intergenic |
| GTGTTATAGCTTAACCCATA+GGG | 0.565951 | 7.1:+5181412 | None:intergenic |
| AGAGTCAAGAAAATTCTTCA+GGG | 0.568811 | 7.1:-5182707 | MS.gene07117:CDS |
| AAAAGTGAATGCCATTCCTA+AGG | 0.569713 | 7.1:-5181530 | MS.gene07117:CDS |
| TTAACTCCAAATAATGGAGG+AGG | 0.576698 | 7.1:-5181601 | MS.gene07117:CDS |
| GTTGGTGAAAGTAGTCATGA+AGG | 0.580432 | 7.1:-5181772 | MS.gene07117:CDS |
| GGGTTATAAGCATGCTGCTG+AGG | 0.582921 | 7.1:+5181484 | None:intergenic |
| GCTGATCAACAAGTTCCTCC+CGG | 0.583544 | 7.1:-5182927 | MS.gene07117:CDS |
| TCTCATCCAATCAACAGCTA+TGG | 0.586584 | 7.1:-5181292 | MS.gene07117:CDS |
| AATGATCATGAAGAATATGA+AGG | 0.589711 | 7.1:-5181262 | MS.gene07117:CDS |
| TGATAATAACAATAAAAGTG+AGG | 0.591536 | 7.1:-5181680 | MS.gene07117:CDS |
| GATCATGAAGAATATGAAGG+TGG | 0.598780 | 7.1:-5181259 | MS.gene07117:CDS |
| CTGTTGATTGGATGAGAGGG+TGG | 0.603779 | 7.1:+5181298 | None:intergenic |
| AATTGATTCTCGGCAGCACA+AGG | 0.604243 | 7.1:-5181980 | MS.gene07117:CDS |
| AATAACAATAAAAGTGAGGG+TGG | 0.610406 | 7.1:-5181676 | MS.gene07117:CDS |
| GGGTGTGGATAGTACATATG+TGG | 0.614125 | 7.1:+5181454 | None:intergenic |
| TGCTGCTGAGGAAGTACTGG+AGG | 0.614651 | 7.1:+5181496 | None:intergenic |
| CTAGAGTAATTAGCATGCAT+AGG | 0.625509 | 7.1:+5181337 | None:intergenic |
| AAAGTCTTGATCCACTGCGA+CGG | 0.628481 | 7.1:-5182740 | MS.gene07117:CDS |
| AAGAACAGTACTGAACAAGT+TGG | 0.630407 | 7.1:-5181790 | MS.gene07117:CDS |
| TGTGGATAGTACATATGTGG+TGG | 0.633196 | 7.1:+5181457 | None:intergenic |
| ATAGCTGTTGATTGGATGAG+AGG | 0.644634 | 7.1:+5181294 | None:intergenic |
| TAGCATGCATAGGCATGACA+GGG | 0.645295 | 7.1:+5181347 | None:intergenic |
| TAGCTGTTGATTGGATGAGA+GGG | 0.658334 | 7.1:+5181295 | None:intergenic |
| TCATTAACTCCAAATAATGG+AGG | 0.678633 | 7.1:-5181604 | MS.gene07117:CDS |
| TTATAGCTTAACCCATAGGG+TGG | 0.684519 | 7.1:+5181415 | None:intergenic |
| TTGAGTGTTTCTAATCCGGG+AGG | 0.702857 | 7.1:+5182912 | None:intergenic |
| GGTTACAGTTACTGGCAACG+TGG | 0.704095 | 7.1:-5181959 | MS.gene07117:CDS |
| AGCATGCATAGGCATGACAG+GGG | 0.720799 | 7.1:+5181348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCTTCAAAATCAAA+AGG | - | chr7.1:5182335-5182354 | MS.gene07117:intron | 15.0% |
| !! | TAATAGCTTATTAAACATAT+TGG | - | chr7.1:5181781-5181800 | MS.gene07117:CDS | 15.0% |
| !! | TATATTTGATTAAAGTCTAA+CGG | - | chr7.1:5182137-5182156 | MS.gene07117:intron | 15.0% |
| !! | TGAAACTGAAAATATTAATA+AGG | - | chr7.1:5182358-5182377 | MS.gene07117:intron | 15.0% |
| !! | AAATATTAATAAGGAGATCA+AGG | - | chr7.1:5182367-5182386 | MS.gene07117:intron | 20.0% |
| !! | AAGAAAAAGAAAAACAAAAG+TGG | - | chr7.1:5182554-5182573 | MS.gene07117:intron | 20.0% |
| !! | CTGATAAAATAAATACCATT+AGG | + | chr7.1:5181723-5181742 | None:intergenic | 20.0% |
| !! | GATAATAACAATAAAAGTGA+GGG | - | chr7.1:5182509-5182528 | MS.gene07117:intron | 20.0% |
| !! | TGATAATAACAATAAAAGTG+AGG | - | chr7.1:5182508-5182527 | MS.gene07117:intron | 20.0% |
| !!! | ATATTTTTCTGAATACCTAA+TGG | - | chr7.1:5181705-5181724 | MS.gene07117:CDS | 20.0% |
| !!! | TATATCATAGTTCTAAATTG+CGG | + | chr7.1:5181672-5181691 | None:intergenic | 20.0% |
| ! | AATGATCATGAAGAATATGA+AGG | - | chr7.1:5182926-5182945 | MS.gene07117:CDS | 25.0% |
| ! | CATAATAATTTCCTTAGGAA+TGG | + | chr7.1:5182672-5182691 | None:intergenic | 25.0% |
| ! | CATGTAATTAACTAAATTCC+AGG | + | chr7.1:5181854-5181873 | None:intergenic | 25.0% |
| ! | TATATCCGTTACAATCATAA+CGG | + | chr7.1:5182169-5182188 | None:intergenic | 25.0% |
| !!! | ATGATTGTAACGGATATATA+GGG | - | chr7.1:5182171-5182190 | MS.gene07117:intron | 25.0% |
| !!! | GATTTTTTATCTTTCTTCTC+AGG | + | chr7.1:5182323-5182342 | None:intergenic | 25.0% |
| !!! | TATGATTGTAACGGATATAT+AGG | - | chr7.1:5182170-5182189 | MS.gene07117:intron | 25.0% |
| AAGAGTCAAGAAAATTCTTC+AGG | - | chr7.1:5181480-5181499 | MS.gene07117:CDS | 30.0% | |
| AATAACAATAAAAGTGAGGG+TGG | - | chr7.1:5182512-5182531 | MS.gene07117:intron | 30.0% | |
| AATATACGTAAGAGTCATAC+AGG | + | chr7.1:5182123-5182142 | None:intergenic | 30.0% | |
| AATGAAGACAAATACAACTG+AGG | - | chr7.1:5181586-5181605 | MS.gene07117:CDS | 30.0% | |
| AGAGTCAAGAAAATTCTTCA+GGG | - | chr7.1:5181481-5181500 | MS.gene07117:CDS | 30.0% | |
| AGCACTTCTTCTTATTATGT+TGG | - | chr7.1:5182815-5182834 | MS.gene07117:intron | 30.0% | |
| ATTAGAAACACTCAAGTATC+AGG | - | chr7.1:5181284-5181303 | MS.gene07117:CDS | 30.0% | |
| ATTGACATGATCAATAAACC+TGG | - | chr7.1:5181833-5181852 | MS.gene07117:CDS | 30.0% | |
| CAATTATGGCTGCAATATAA+AGG | + | chr7.1:5181639-5181658 | None:intergenic | 30.0% | |
| GCTTCATTAACTCCAAATAA+TGG | - | chr7.1:5182581-5182600 | MS.gene07117:intron | 30.0% | |
| TCATTAACTCCAAATAATGG+AGG | - | chr7.1:5182584-5182603 | MS.gene07117:intron | 30.0% | |
| TTAGAAGACTAACACTTAAG+TGG | + | chr7.1:5181764-5181783 | None:intergenic | 30.0% | |
| TTATATTGCAGCCATAATTG+CGG | - | chr7.1:5181639-5181658 | MS.gene07117:CDS | 30.0% | |
| TTTATCATGGATGTGCTTTA+GGG | - | chr7.1:5181922-5181941 | MS.gene07117:CDS | 30.0% | |
| ! | ACAGAACAGAAATTGATTCT+CGG | - | chr7.1:5182198-5182217 | MS.gene07117:intron | 30.0% |
| ! | ATACTTGAGTGTTTCTAATC+CGG | + | chr7.1:5181283-5181302 | None:intergenic | 30.0% |
| ! | TTTTTATCTTTCTTCTCAGG+AGG | + | chr7.1:5182320-5182339 | None:intergenic | 30.0% |
| !! | TGATTGTAACGGATATATAG+GGG | - | chr7.1:5182172-5182191 | MS.gene07117:intron | 30.0% |
| !!! | TTCACTTTTTCAAGTACTTG+TGG | + | chr7.1:5182647-5182666 | None:intergenic | 30.0% |
| AAAAGTGAATGCCATTCCTA+AGG | - | chr7.1:5182658-5182677 | MS.gene07117:intron | 35.0% | |
| AATAATACACACACACACCA+TGG | - | chr7.1:5181516-5181535 | MS.gene07117:CDS | 35.0% | |
| AGCAAAGAATAGATTCAGGA+GGG | + | chr7.1:5181365-5181384 | None:intergenic | 35.0% | |
| ATCAAGAAGCTTTCAAGATC+AGG | - | chr7.1:5182266-5182285 | MS.gene07117:intron | 35.0% | |
| ATCCACTTCAGACTTTATCA+TGG | - | chr7.1:5181909-5181928 | MS.gene07117:CDS | 35.0% | |
| ATCCATGATAAAGTCTGAAG+TGG | + | chr7.1:5181914-5181933 | None:intergenic | 35.0% | |
| CTAGAGTAATTAGCATGCAT+AGG | + | chr7.1:5182854-5182873 | None:intergenic | 35.0% | |
| CTTTATCATGGATGTGCTTT+AGG | - | chr7.1:5181921-5181940 | MS.gene07117:CDS | 35.0% | |
| GAAGATTCAGATCACAAAGA+AGG | - | chr7.1:5182476-5182495 | MS.gene07117:intron | 35.0% | |
| GATCACAAAGAAGGTCATAA+TGG | - | chr7.1:5182485-5182504 | MS.gene07117:intron | 35.0% | |
| GATCATGAAGAATATGAAGG+TGG | - | chr7.1:5182929-5182948 | MS.gene07117:CDS | 35.0% | |
| GTGTTATAGCTTAACCCATA+GGG | + | chr7.1:5182779-5182798 | None:intergenic | 35.0% | |
| GTTGAGCAAAGAATAGATTC+AGG | + | chr7.1:5181369-5181388 | None:intergenic | 35.0% | |
| TCAAGAAGCTTTCAAGATCA+GGG | - | chr7.1:5182267-5182286 | MS.gene07117:intron | 35.0% | |
| TCCAACCGTTATGATTGTAA+CGG | - | chr7.1:5182161-5182180 | MS.gene07117:intron | 35.0% | |
| TGTATAGATGATGCAATTGC+AGG | - | chr7.1:5182440-5182459 | MS.gene07117:intron | 35.0% | |
| TGTGTTATAGCTTAACCCAT+AGG | + | chr7.1:5182780-5182799 | None:intergenic | 35.0% | |
| TTGGTTAAACAGTAGTGTCT+TGG | - | chr7.1:5181800-5181819 | MS.gene07117:CDS | 35.0% | |
| ! | AAGAACAGTACTGAACAAGT+TGG | - | chr7.1:5182398-5182417 | MS.gene07117:intron | 35.0% |
| ! | GGAGGCATAATAATTTCCTT+AGG | + | chr7.1:5182677-5182696 | None:intergenic | 35.0% |
| ! | TACTTGAGTGTTTCTAATCC+GGG | + | chr7.1:5181282-5181301 | None:intergenic | 35.0% |
| ! | TCTTTTCCTCCTCCATTATT+TGG | + | chr7.1:5182596-5182615 | None:intergenic | 35.0% |
| ! | TTAACTCCAAATAATGGAGG+AGG | - | chr7.1:5182587-5182606 | MS.gene07117:intron | 35.0% |
| !! | AAAATTCTTCAGGGCATTGA+AGG | - | chr7.1:5181490-5181509 | MS.gene07117:CDS | 35.0% |
| !! | AGTACATATGTGGTGGATAT+GGG | + | chr7.1:5182727-5182746 | None:intergenic | 35.0% |
| !! | TAAGAAGAAGTGCTAGAAAC+AGG | + | chr7.1:5182809-5182828 | None:intergenic | 35.0% |
| !! | TAGTACATATGTGGTGGATA+TGG | + | chr7.1:5182728-5182747 | None:intergenic | 35.0% |
| !! | TTAGTAGACTTGTTAGAGCA+AGG | + | chr7.1:5181337-5181356 | None:intergenic | 35.0% |
| ATGTGATCATTCTACAGACG+TGG | - | chr7.1:5181419-5181438 | MS.gene07117:CDS | 40.0% | |
| CAGGGAAATCAGTAGAACTT+TGG | - | chr7.1:5182285-5182304 | MS.gene07117:intron | 40.0% | |
| GAAGACAAATACAACTGAGG+CGG | - | chr7.1:5181589-5181608 | MS.gene07117:CDS | 40.0% | |
| GAGCAAAGAATAGATTCAGG+AGG | + | chr7.1:5181366-5181385 | None:intergenic | 40.0% | |
| GTTAAACAGTAGTGTCTTGG+CGG | - | chr7.1:5181803-5181822 | MS.gene07117:CDS | 40.0% | |
| TCAAGTTTGCAACATAACCG+CGG | + | chr7.1:5181555-5181574 | None:intergenic | 40.0% | |
| TCCGTTACAATCATAACGGT+TGG | + | chr7.1:5182165-5182184 | None:intergenic | 40.0% | |
| TCTCATCCAATCAACAGCTA+TGG | - | chr7.1:5182896-5182915 | MS.gene07117:intron | 40.0% | |
| TGATGACCATAGCTGTTGAT+TGG | + | chr7.1:5182905-5182924 | None:intergenic | 40.0% | |
| TGTGATCATTCTACAGACGT+GGG | - | chr7.1:5181420-5181439 | MS.gene07117:CDS | 40.0% | |
| TGTGGATAGTACATATGTGG+TGG | + | chr7.1:5182734-5182753 | None:intergenic | 40.0% | |
| TTAAACAGTAGTGTCTTGGC+GGG | - | chr7.1:5181804-5181823 | MS.gene07117:CDS | 40.0% | |
| TTATAGCTTAACCCATAGGG+TGG | + | chr7.1:5182776-5182795 | None:intergenic | 40.0% | |
| ! | ATAGCTGTTGATTGGATGAG+AGG | + | chr7.1:5182897-5182916 | None:intergenic | 40.0% |
| ! | GTTGGTGAAAGTAGTCATGA+AGG | - | chr7.1:5182416-5182435 | MS.gene07117:intron | 40.0% |
| ! | TAGCTGTTGATTGGATGAGA+GGG | + | chr7.1:5182896-5182915 | None:intergenic | 40.0% |
| AAAGTCTTGATCCACTGCGA+CGG | - | chr7.1:5181448-5181467 | MS.gene07117:CDS | 45.0% | |
| AACTGAGGCGGCTGTAATTT+CGG | - | chr7.1:5181601-5181620 | MS.gene07117:CDS | 45.0% | |
| CAGCACAAGGTTACAGTTAC+TGG | - | chr7.1:5182221-5182240 | MS.gene07117:intron | 45.0% | |
| GATGCAATTGCAGGTGATGA+TGG | - | chr7.1:5182449-5182468 | MS.gene07117:intron | 45.0% | |
| GGGTGTGGATAGTACATATG+TGG | + | chr7.1:5182737-5182756 | None:intergenic | 45.0% | |
| TAGCATGCATAGGCATGACA+GGG | + | chr7.1:5182844-5182863 | None:intergenic | 45.0% | |
| TTAGCATGCATAGGCATGAC+AGG | + | chr7.1:5182845-5182864 | None:intergenic | 45.0% | |
| TTGTTGATCAGCAGCTGGTT+TGG | + | chr7.1:5181253-5181272 | None:intergenic | 45.0% | |
| ! | AATTGATTCTCGGCAGCACA+AGG | - | chr7.1:5182208-5182227 | MS.gene07117:intron | 45.0% |
| ! | TGTTGATCAGCAGCTGGTTT+GGG | + | chr7.1:5181252-5181271 | None:intergenic | 45.0% |
| ! | TTCTTCTCAGGAGGCTTTTC+TGG | + | chr7.1:5182311-5182330 | None:intergenic | 45.0% |
| ! | TTGAGTGTTTCTAATCCGGG+AGG | + | chr7.1:5181279-5181298 | None:intergenic | 45.0% |
| AGCATGCATAGGCATGACAG+GGG | + | chr7.1:5182843-5182862 | None:intergenic | 50.0% | |
| GCTGATCAACAAGTTCCTCC+CGG | - | chr7.1:5181261-5181280 | MS.gene07117:CDS | 50.0% | |
| GGGTTATAAGCATGCTGCTG+AGG | + | chr7.1:5182707-5182726 | None:intergenic | 50.0% | |
| GGTTACAGTTACTGGCAACG+TGG | - | chr7.1:5182229-5182248 | MS.gene07117:intron | 50.0% | |
| TTGATTGGATGAGAGGGTGG+AGG | + | chr7.1:5182890-5182909 | None:intergenic | 50.0% | |
| ! | CTGTTGATTGGATGAGAGGG+TGG | + | chr7.1:5182893-5182912 | None:intergenic | 50.0% |
| ! | GCGGACTACAACCGCAATTA+TGG | + | chr7.1:5181653-5181672 | None:intergenic | 50.0% |
| !! | ATGGTTCTGAATTGCGACCG+CGG | - | chr7.1:5181535-5181554 | MS.gene07117:CDS | 50.0% |
| !! | GGAACTTGTTGATCAGCAGC+TGG | + | chr7.1:5181258-5181277 | None:intergenic | 50.0% |
| ATTGGATGAGAGGGTGGAGG+AGG | + | chr7.1:5182887-5182906 | None:intergenic | 55.0% | |
| CAGCAGTAGCACCACCCTAT+GGG | - | chr7.1:5182762-5182781 | MS.gene07117:intron | 55.0% | |
| GCGGTCGCAATTCAGAACCA+TGG | + | chr7.1:5181536-5181555 | None:intergenic | 55.0% | |
| ! | AGTAGTGTCTTGGCGGGTCT+TGG | - | chr7.1:5181810-5181829 | MS.gene07117:CDS | 55.0% |
| ! | GCATGCTGCTGAGGAAGTAC+TGG | + | chr7.1:5182698-5182717 | None:intergenic | 55.0% |
| ! | TTTTTGTGCAGCCGTCGCAG+TGG | + | chr7.1:5181462-5181481 | None:intergenic | 55.0% |
| !! | TGCTGCTGAGGAAGTACTGG+AGG | + | chr7.1:5182695-5182714 | None:intergenic | 55.0% |
| CCAGCAGTAGCACCACCCTA+TGG | - | chr7.1:5182761-5182780 | MS.gene07117:intron | 60.0% | |
| !! | CCATAGGGTGGTGCTACTGC+TGG | + | chr7.1:5182764-5182783 | None:intergenic | 60.0% |
| !! | GTGGTGCTACTGCTGGAGGA+GGG | + | chr7.1:5182757-5182776 | None:intergenic | 60.0% |
| !! | TAGGGTGGTGCTACTGCTGG+AGG | + | chr7.1:5182761-5182780 | None:intergenic | 60.0% |
| GAGAGGGTGGAGGAGGTGGA+GGG | + | chr7.1:5182880-5182899 | None:intergenic | 65.0% | |
| GCTACTGCTGGAGGAGGGTG+TGG | + | chr7.1:5182752-5182771 | None:intergenic | 65.0% | |
| GGATGAGAGGGTGGAGGAGG+TGG | + | chr7.1:5182884-5182903 | None:intergenic | 65.0% | |
| TGAGAGGGTGGAGGAGGTGG+AGG | + | chr7.1:5182881-5182900 | None:intergenic | 65.0% | |
| !! | GGTGGTGCTACTGCTGGAGG+AGG | + | chr7.1:5182758-5182777 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5181240 | 5182970 | 5181240 | ID=MS.gene07117 |
| chr7.1 | mRNA | 5181240 | 5182970 | 5181240 | ID=MS.gene07117.t1;Parent=MS.gene07117 |
| chr7.1 | exon | 5182905 | 5182970 | 5182905 | ID=MS.gene07117.t1.exon1;Parent=MS.gene07117.t1 |
| chr7.1 | CDS | 5182905 | 5182970 | 5182905 | ID=cds.MS.gene07117.t1;Parent=MS.gene07117.t1 |
| chr7.1 | exon | 5182699 | 5182774 | 5182699 | ID=MS.gene07117.t1.exon2;Parent=MS.gene07117.t1 |
| chr7.1 | CDS | 5182699 | 5182774 | 5182699 | ID=cds.MS.gene07117.t1;Parent=MS.gene07117.t1 |
| chr7.1 | exon | 5181240 | 5182018 | 5181240 | ID=MS.gene07117.t1.exon3;Parent=MS.gene07117.t1 |
| chr7.1 | CDS | 5181240 | 5182018 | 5181240 | ID=cds.MS.gene07117.t1;Parent=MS.gene07117.t1 |
| Gene Sequence |
| Protein sequence |
