Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07121.t1 | KEH24371.1 | 97.6 | 289 | 6 | 1 | 15 | 302 | 61 | 349 | 2.80E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07121.t1 | Q93VB2 | 74.1 | 286 | 64 | 3 | 17 | 299 | 75 | 353 | 7.0e-114 | 411.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07121.t1 | A0A072U4W3 | 97.6 | 289 | 6 | 1 | 15 | 302 | 61 | 349 | 2.0e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051033 | MS.gene07121 | 0.813047 | 3.12E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07121.t1 | MTR_7g108520 | 97.690 | 303 | 6 | 1 | 1 | 302 | 47 | 349 | 0.0 | 605 |
| MS.gene07121.t1 | MTR_7g108520 | 98.007 | 301 | 5 | 1 | 1 | 300 | 47 | 347 | 0.0 | 603 |
| MS.gene07121.t1 | MTR_7g108520 | 98.007 | 301 | 5 | 1 | 1 | 300 | 47 | 347 | 0.0 | 603 |
| MS.gene07121.t1 | MTR_1g083230 | 74.444 | 270 | 61 | 3 | 6 | 267 | 15 | 284 | 1.12e-146 | 418 |
| MS.gene07121.t1 | MTR_1g088855 | 66.535 | 254 | 85 | 0 | 21 | 274 | 4 | 257 | 2.26e-129 | 373 |
| MS.gene07121.t1 | MTR_3g093590 | 62.977 | 262 | 97 | 0 | 8 | 269 | 43 | 304 | 2.99e-122 | 357 |
| MS.gene07121.t1 | MTR_4g130190 | 33.735 | 249 | 158 | 4 | 20 | 263 | 15 | 261 | 3.27e-45 | 155 |
| MS.gene07121.t1 | MTR_4g130190 | 33.333 | 264 | 167 | 5 | 20 | 278 | 15 | 274 | 1.91e-44 | 154 |
| MS.gene07121.t1 | MTR_4g130190 | 33.333 | 264 | 167 | 5 | 20 | 278 | 15 | 274 | 1.98e-44 | 155 |
| MS.gene07121.t1 | MTR_4g130190 | 32.110 | 218 | 141 | 4 | 66 | 278 | 1 | 216 | 4.55e-32 | 120 |
| MS.gene07121.t1 | MTR_4g130190 | 32.110 | 218 | 141 | 4 | 66 | 278 | 1 | 216 | 8.56e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07121.t1 | AT3G62770 | 77.154 | 267 | 56 | 2 | 6 | 267 | 60 | 326 | 5.10e-151 | 429 |
| MS.gene07121.t1 | AT3G62770 | 77.154 | 267 | 56 | 2 | 6 | 267 | 60 | 326 | 3.59e-150 | 428 |
| MS.gene07121.t1 | AT3G56440 | 59.932 | 292 | 106 | 3 | 20 | 302 | 36 | 325 | 1.27e-124 | 360 |
| MS.gene07121.t1 | AT3G56440 | 60.279 | 287 | 103 | 3 | 20 | 297 | 36 | 320 | 3.91e-123 | 357 |
| MS.gene07121.t1 | AT3G56440 | 60.279 | 287 | 103 | 3 | 20 | 297 | 36 | 320 | 2.29e-122 | 356 |
| MS.gene07121.t1 | AT2G40810 | 60.215 | 279 | 108 | 1 | 4 | 279 | 13 | 291 | 1.58e-121 | 354 |
| MS.gene07121.t1 | AT2G40810 | 60.215 | 279 | 108 | 1 | 4 | 279 | 13 | 291 | 1.58e-121 | 354 |
| MS.gene07121.t1 | AT5G05150 | 49.393 | 247 | 123 | 2 | 20 | 264 | 33 | 279 | 1.41e-82 | 254 |
| MS.gene07121.t1 | AT4G30510 | 32.979 | 282 | 177 | 5 | 16 | 292 | 7 | 281 | 1.38e-41 | 148 |
| MS.gene07121.t1 | AT4G30510 | 33.190 | 232 | 145 | 4 | 66 | 292 | 1 | 227 | 2.99e-32 | 122 |
| MS.gene07121.t1 | AT2G40810 | 46.602 | 103 | 52 | 1 | 4 | 103 | 13 | 115 | 4.78e-23 | 96.3 |
| MS.gene07121.t1 | AT2G40810 | 59.155 | 71 | 29 | 0 | 209 | 279 | 96 | 166 | 3.36e-19 | 85.9 |
Find 90 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCCTTCATTAAATTTAA+AGG | 0.052251 | 7.1:-5234329 | MS.gene07121:intron |
| GGCGGAAGGGGATTGAGGTT+GGG | 0.285220 | 7.1:+5235403 | None:intergenic |
| TCGTTTGCTCTCACGCTTGA+TGG | 0.287115 | 7.1:-5234831 | MS.gene07121:CDS |
| GCTTGTCCTGGTTTGCATAA+GGG | 0.298433 | 7.1:-5234924 | MS.gene07121:CDS |
| TGCTTGTCCTGGTTTGCATA+AGG | 0.312034 | 7.1:-5234925 | MS.gene07121:CDS |
| CTCCATTCGCTGCATCAAAT+TGG | 0.316013 | 7.1:+5233101 | None:intergenic |
| GCAGGCGTGGTCTTGGTTAA+AGG | 0.323463 | 7.1:+5235340 | None:intergenic |
| GTCTGTGGCGGCGGCGAAGC+AGG | 0.327716 | 7.1:+5235322 | None:intergenic |
| CCTTGTGATGTTTCATTCTC+AGG | 0.330059 | 7.1:+5234395 | None:intergenic |
| GCGGAAGGGGATTGAGGTTG+GGG | 0.336650 | 7.1:+5235404 | None:intergenic |
| CGGTGTGGTGGTGGCGGAAG+GGG | 0.341569 | 7.1:+5235391 | None:intergenic |
| TCCCAGATCATGACTTTGTT+AGG | 0.353502 | 7.1:+5235155 | None:intergenic |
| GTTAGCAGTTTCAAGTGATA+AGG | 0.356259 | 7.1:-5234462 | MS.gene07121:CDS |
| TGGCGGAAGGGGATTGAGGT+TGG | 0.359170 | 7.1:+5235402 | None:intergenic |
| GAACTCTTCCGCCGCGAATT+CGG | 0.363971 | 7.1:-5235263 | MS.gene07121:CDS |
| CGGCGAAGCAGGCGTGGTCT+TGG | 0.365320 | 7.1:+5235333 | None:intergenic |
| TCCTTCCGTGCCGCCGTTCG+TGG | 0.365834 | 7.1:-5235101 | MS.gene07121:CDS |
| TGCAATATCTTAGCACTTGT+TGG | 0.369031 | 7.1:-5235203 | MS.gene07121:CDS |
| TGATAGCGGCACGCTACTTC+AGG | 0.376770 | 7.1:-5234754 | MS.gene07121:CDS |
| CTCCTAACAAAGTCATGATC+TGG | 0.377272 | 7.1:-5235157 | MS.gene07121:CDS |
| GGCGGTGTGGTGGTGGCGGA+AGG | 0.391008 | 7.1:+5235389 | None:intergenic |
| TCTCTCGTTCTTGCTTGTCC+TGG | 0.395881 | 7.1:-5234936 | MS.gene07121:CDS |
| TGCAGCAGAGATATATAGTT+TGG | 0.397595 | 7.1:-5234507 | MS.gene07121:CDS |
| TTCCTCCACCGCCGAATTCG+CGG | 0.408914 | 7.1:+5235252 | None:intergenic |
| AAGGAGCGAGATGAGCTAGA+AGG | 0.409929 | 7.1:+5234344 | None:intergenic |
| GGCGGAAGAGTTCGCGGAAT+GGG | 0.420015 | 7.1:+5235273 | None:intergenic |
| GAAACTGAACATAAACCCTT+AGG | 0.420208 | 7.1:+5234972 | None:intergenic |
| AGGCAGCGGCGGTGTGGTGG+TGG | 0.424511 | 7.1:+5235382 | None:intergenic |
| CAGCGGCGGTGTGGTGGTGG+CGG | 0.431067 | 7.1:+5235385 | None:intergenic |
| GTGTCAAGGGTACGCTCATT+CGG | 0.441551 | 7.1:-5234788 | MS.gene07121:CDS |
| ATCTTAGCACTTGTTGGTGG+TGG | 0.441749 | 7.1:-5235197 | MS.gene07121:CDS |
| CGCCGCGAATTCGGCGGTGG+AGG | 0.447665 | 7.1:-5235254 | MS.gene07121:CDS |
| TTTACCTTTAAATTTAATGA+AGG | 0.451756 | 7.1:+5234325 | None:intergenic |
| CACCACTTGAATTAACCTTA+AGG | 0.466371 | 7.1:+5234420 | None:intergenic |
| CGGAGGCAGCGGCGGTGTGG+TGG | 0.470065 | 7.1:+5235379 | None:intergenic |
| GCGGTGTGGTGGTGGCGGAA+GGG | 0.473609 | 7.1:+5235390 | None:intergenic |
| GCCACGAACGGCGGCACGGA+AGG | 0.474871 | 7.1:+5235100 | None:intergenic |
| GAAGCCGTTGTCTGTGGCGG+CGG | 0.475523 | 7.1:+5235313 | None:intergenic |
| TTAGCAGTTTCAAGTGATAA+GGG | 0.476994 | 7.1:-5234461 | MS.gene07121:CDS |
| CGGCGGAAGAGTTCGCGGAA+TGG | 0.480748 | 7.1:+5235272 | None:intergenic |
| AGGAGCGAGATGAGCTAGAA+GGG | 0.490715 | 7.1:+5234345 | None:intergenic |
| TGGCGGCGGCGAAGCAGGCG+TGG | 0.501744 | 7.1:+5235327 | None:intergenic |
| TTCCGCCGCGAATTCGGCGG+TGG | 0.501788 | 7.1:-5235257 | MS.gene07121:CDS |
| TGAAGAAGCGACGGAGGCAG+CGG | 0.512045 | 7.1:+5235368 | None:intergenic |
| CGACGGAGGCAGCGGCGGTG+TGG | 0.513464 | 7.1:+5235376 | None:intergenic |
| ACGCAATCGAACGCCACGAA+CGG | 0.521201 | 7.1:+5235088 | None:intergenic |
| AGCCTTAAGGTTAATTCAAG+TGG | 0.522630 | 7.1:-5234422 | MS.gene07121:CDS |
| TGCCAATTTGATGCAGCGAA+TGG | 0.528435 | 7.1:-5233103 | MS.gene07121:CDS |
| TGAAACTATTGCTAACCCTA+AGG | 0.531656 | 7.1:-5234988 | MS.gene07121:CDS |
| TCCTAACAAAGTCATGATCT+GGG | 0.532274 | 7.1:-5235156 | MS.gene07121:CDS |
| AATATCTTAGCACTTGTTGG+TGG | 0.534285 | 7.1:-5235200 | MS.gene07121:CDS |
| AAACTGAACATAAACCCTTA+GGG | 0.540166 | 7.1:+5234973 | None:intergenic |
| ATTCGCGGCGGAAGAGTTCG+CGG | 0.547455 | 7.1:+5235267 | None:intergenic |
| GTGGTGGCGGAAGGGGATTG+AGG | 0.548501 | 7.1:+5235398 | None:intergenic |
| GAAACTATTGCTAACCCTAA+GGG | 0.548961 | 7.1:-5234987 | MS.gene07121:CDS |
| CAATCGAACGCCACGAACGG+CGG | 0.549215 | 7.1:+5235091 | None:intergenic |
| TGATCGGATAATTGTGGTGG+TGG | 0.549437 | 7.1:-5235063 | MS.gene07121:CDS |
| GCGTTCGATTGCGTCGTGAT+CGG | 0.552273 | 7.1:-5235079 | MS.gene07121:CDS |
| AATTTGATGCAGCGAATGGA+GGG | 0.553787 | 7.1:-5233099 | MS.gene07121:CDS |
| GAACGCCACGAACGGCGGCA+CGG | 0.561874 | 7.1:+5235096 | None:intergenic |
| AATCGCAACTGCCAGTGTCA+AGG | 0.562244 | 7.1:-5234802 | MS.gene07121:CDS |
| ATCGCAACTGCCAGTGTCAA+GGG | 0.564122 | 7.1:-5234801 | MS.gene07121:CDS |
| GCGGAAGCCGTTGTCTGTGG+CGG | 0.567677 | 7.1:+5235310 | None:intergenic |
| AAGGAGAGTTGAAGAAGCGA+CGG | 0.568346 | 7.1:+5235359 | None:intergenic |
| CAATTTGATGCAGCGAATGG+AGG | 0.571105 | 7.1:-5233100 | MS.gene07121:CDS |
| CTCTTCCGCCGCGAATTCGG+CGG | 0.571536 | 7.1:-5235260 | MS.gene07121:CDS |
| CAGATCATGACTTTGTTAGG+AGG | 0.582133 | 7.1:+5235158 | None:intergenic |
| AGATGAGCTAGAAGGGGCAA+TGG | 0.584490 | 7.1:+5234352 | None:intergenic |
| GATGCGGAAGCCGTTGTCTG+TGG | 0.589092 | 7.1:+5235307 | None:intergenic |
| TGTTAGGAGGATACTGAGGG+TGG | 0.589687 | 7.1:+5235171 | None:intergenic |
| ATCTGACCCTTATGCAAACC+AGG | 0.591171 | 7.1:+5234918 | None:intergenic |
| GAGAGTTGAAGAAGCGACGG+AGG | 0.595164 | 7.1:+5235362 | None:intergenic |
| CGGATTTATGATACTGATAG+CGG | 0.595216 | 7.1:-5234768 | MS.gene07121:CDS |
| AGAAGCGACGGAGGCAGCGG+CGG | 0.595871 | 7.1:+5235371 | None:intergenic |
| TTCGCCGCCGCCACAGACAA+CGG | 0.596092 | 7.1:-5235317 | MS.gene07121:CDS |
| GATCATCAAGGTACTTGCAT+CGG | 0.606664 | 7.1:-5235131 | MS.gene07121:CDS |
| AACTGCTAACCAGTGAGCCG+TGG | 0.607610 | 7.1:+5234475 | None:intergenic |
| ATTTGATGCAGCGAATGGAG+GGG | 0.619445 | 7.1:-5233098 | MS.gene07121:CDS |
| ATGATCTGGGATGATCATCA+AGG | 0.621957 | 7.1:-5235143 | MS.gene07121:CDS |
| GTTAGGAGGATACTGAGGGT+GGG | 0.629867 | 7.1:+5235172 | None:intergenic |
| CCTGAGAATGAAACATCACA+AGG | 0.636041 | 7.1:-5234395 | MS.gene07121:CDS |
| ACTTTGTTAGGAGGATACTG+AGG | 0.636799 | 7.1:+5235167 | None:intergenic |
| GCGTCGTGATCGGATAATTG+TGG | 0.646819 | 7.1:-5235069 | MS.gene07121:CDS |
| CTTTGTTAGGAGGATACTGA+GGG | 0.651217 | 7.1:+5235168 | None:intergenic |
| GGAGCGAGATGAGCTAGAAG+GGG | 0.653879 | 7.1:+5234346 | None:intergenic |
| ATGGGTCGCAGTTGTAGATG+CGG | 0.658203 | 7.1:+5235291 | None:intergenic |
| AATGAGCGTACCCTTGACAC+TGG | 0.661568 | 7.1:+5234791 | None:intergenic |
| TCGTGATCGGATAATTGTGG+TGG | 0.700678 | 7.1:-5235066 | MS.gene07121:CDS |
| CTCCACCGCCGAATTCGCGG+CGG | 0.704503 | 7.1:+5235255 | None:intergenic |
| CAAGTGCTAAGATATTGCAG+CGG | 0.765155 | 7.1:+5235207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACCTTTAAATTTAATGA+AGG | + | chr7.1:5234180-5234199 | None:intergenic | 15.0% |
| !! | AGATAACATGAAATGTAATA+TGG | - | chr7.1:5234746-5234765 | MS.gene07121:intron | 20.0% |
| !! | AGCAAACAAAACAAAAAAAT+TGG | + | chr7.1:5234699-5234718 | None:intergenic | 20.0% |
| !! | ATAATCCTAACAAAAGAATT+AGG | - | chr7.1:5235193-5235212 | MS.gene07121:CDS | 20.0% |
| !! | TAAAAATAAGAGAACACAAA+GGG | + | chr7.1:5235069-5235088 | None:intergenic | 20.0% |
| !! | TGTTAGGATTATAACATAAA+GGG | + | chr7.1:5235185-5235204 | None:intergenic | 20.0% |
| !! | TTAACTCAGAAAAAAACTAA+AGG | + | chr7.1:5234832-5234851 | None:intergenic | 20.0% |
| !! | TTGTTAGGATTATAACATAA+AGG | + | chr7.1:5235186-5235205 | None:intergenic | 20.0% |
| !!! | AAGATTTGATTTTTATGTGT+GGG | - | chr7.1:5233903-5233922 | MS.gene07121:intron | 20.0% |
| !!! | ATAAACATTCACCTTTATTT+GGG | + | chr7.1:5235321-5235340 | None:intergenic | 20.0% |
| !!! | ATTAGTTATGTTTCTTTTGT+TGG | - | chr7.1:5233820-5233839 | MS.gene07121:intron | 20.0% |
| !!! | TGGGCATTTTTTTTTTTTTT+GGG | - | chr7.1:5235292-5235311 | MS.gene07121:CDS | 20.0% |
| !!! | TTGGGCATTTTTTTTTTTTT+TGG | - | chr7.1:5235291-5235310 | MS.gene07121:CDS | 20.0% |
| ! | AAGAATACAGTCATAATTCT+TGG | - | chr7.1:5234488-5234507 | MS.gene07121:CDS | 25.0% |
| ! | CAAGAATTGAATGAAATAGA+AGG | - | chr7.1:5234935-5234954 | MS.gene07121:CDS | 25.0% |
| ! | CATAAACATTCACCTTTATT+TGG | + | chr7.1:5235322-5235341 | None:intergenic | 25.0% |
| ! | GTAAAAATAAGAGAACACAA+AGG | + | chr7.1:5235070-5235089 | None:intergenic | 25.0% |
| ! | TGAATCGTCAAGATAAATTT+GGG | + | chr7.1:5234883-5234902 | None:intergenic | 25.0% |
| ! | TTGAATCGTCAAGATAAATT+TGG | + | chr7.1:5234884-5234903 | None:intergenic | 25.0% |
| !! | AACAAAAAAATTGGTTCACA+TGG | + | chr7.1:5234690-5234709 | None:intergenic | 25.0% |
| !! | ACATATAATTTTGTTCACGT+GGG | - | chr7.1:5235222-5235241 | MS.gene07121:CDS | 25.0% |
| !! | TGTTGGATTAGATGTTATTA+AGG | - | chr7.1:5233837-5233856 | MS.gene07121:intron | 25.0% |
| !!! | GAAGATTTGATTTTTATGTG+TGG | - | chr7.1:5233902-5233921 | MS.gene07121:intron | 25.0% |
| AAAAAATGCCCAATGCATTT+AGG | + | chr7.1:5235284-5235303 | None:intergenic | 30.0% | |
| AAACTGAACATAAACCCTTA+GGG | + | chr7.1:5233532-5233551 | None:intergenic | 30.0% | |
| AAATCAAATCTTCACACCAT+AGG | + | chr7.1:5233895-5233914 | None:intergenic | 30.0% | |
| AAATCCTTTCCTAAATGCAT+TGG | - | chr7.1:5235272-5235291 | MS.gene07121:CDS | 30.0% | |
| AAGTTAGTTAGTTAGTTAGC+TGG | + | chr7.1:5235125-5235144 | None:intergenic | 30.0% | |
| AATCCTTTCCTAAATGCATT+GGG | - | chr7.1:5235273-5235292 | MS.gene07121:CDS | 30.0% | |
| AGGAAAGGATTTATCTAAAG+AGG | + | chr7.1:5235264-5235283 | None:intergenic | 30.0% | |
| CACGTGAACAAAATTATATG+TGG | + | chr7.1:5235223-5235242 | None:intergenic | 30.0% | |
| CACTCTGAATTGAAATACTT+GGG | + | chr7.1:5234407-5234426 | None:intergenic | 30.0% | |
| CGCTCCTTCATTAAATTTAA+AGG | - | chr7.1:5234173-5234192 | MS.gene07121:intron | 30.0% | |
| TAACCTTAAGGCTAAAAACA+TGG | + | chr7.1:5234073-5234092 | None:intergenic | 30.0% | |
| TATTTGACAACCTATTTAGC+AGG | - | chr7.1:5234242-5234261 | MS.gene07121:intron | 30.0% | |
| TTCACAAAGACGATATTCAA+AGG | - | chr7.1:5235034-5235053 | MS.gene07121:CDS | 30.0% | |
| ! | AGAGTATTCTCTATTGTGAA+GGG | + | chr7.1:5235013-5235032 | None:intergenic | 30.0% |
| ! | ATTTCTTGGATGTGGATTTT+AGG | - | chr7.1:5233956-5233975 | MS.gene07121:intron | 30.0% |
| ! | CACATATAATTTTGTTCACG+TGG | - | chr7.1:5235221-5235240 | MS.gene07121:CDS | 30.0% |
| ! | GAACACCTAATTCTTTTGTT+AGG | + | chr7.1:5235201-5235220 | None:intergenic | 30.0% |
| ! | GTTTTTCTGTGTGAATTTCT+TGG | - | chr7.1:5233942-5233961 | MS.gene07121:intron | 30.0% |
| ! | TAGAGTATTCTCTATTGTGA+AGG | + | chr7.1:5235014-5235033 | None:intergenic | 30.0% |
| ! | TTAGCAGTTTCAAGTGATAA+GGG | - | chr7.1:5234041-5234060 | MS.gene07121:intron | 30.0% |
| !! | GTTGTCTTATTTATGTCCTA+TGG | - | chr7.1:5233876-5233895 | MS.gene07121:intron | 30.0% |
| !!! | ATGTGGATTTTAGGTTAGAA+GGG | - | chr7.1:5233965-5233984 | MS.gene07121:intron | 30.0% |
| !!! | TTTTTGGGTATCCCAAATAA+AGG | - | chr7.1:5235307-5235326 | MS.gene07121:CDS | 30.0% |
| AAAAGAGAGTGACTGAATAC+GGG | - | chr7.1:5234798-5234817 | MS.gene07121:CDS | 35.0% | |
| AGCCTTAAGGTTAATTCAAG+TGG | - | chr7.1:5234080-5234099 | MS.gene07121:intron | 35.0% | |
| CACCACTTGAATTAACCTTA+AGG | + | chr7.1:5234085-5234104 | None:intergenic | 35.0% | |
| CCAAGTATTTCAATTCAGAG+TGG | - | chr7.1:5234405-5234424 | MS.gene07121:CDS | 35.0% | |
| CCACTCTGAATTGAAATACT+TGG | + | chr7.1:5234408-5234427 | None:intergenic | 35.0% | |
| CGGATTTATGATACTGATAG+CGG | - | chr7.1:5233734-5233753 | MS.gene07121:intron | 35.0% | |
| CTATTTAGCAGGATAAGACT+TGG | - | chr7.1:5234253-5234272 | MS.gene07121:intron | 35.0% | |
| CTTTAAGTACTACTGAGTTG+AGG | - | chr7.1:5234651-5234670 | MS.gene07121:intron | 35.0% | |
| GAAAAGAGAGTGACTGAATA+CGG | - | chr7.1:5234797-5234816 | MS.gene07121:CDS | 35.0% | |
| GAAACTATTGCTAACCCTAA+GGG | - | chr7.1:5233515-5233534 | MS.gene07121:intron | 35.0% | |
| GAAACTGAACATAAACCCTT+AGG | + | chr7.1:5233533-5233552 | None:intergenic | 35.0% | |
| GAGTATTCTCTATTGTGAAG+GGG | + | chr7.1:5235012-5235031 | None:intergenic | 35.0% | |
| TACAGTCATAATTCTTGGCA+TGG | - | chr7.1:5234493-5234512 | MS.gene07121:CDS | 35.0% | |
| TCCTAACAAAGTCATGATCT+GGG | - | chr7.1:5233346-5233365 | MS.gene07121:intron | 35.0% | |
| TGAAACTATTGCTAACCCTA+AGG | - | chr7.1:5233514-5233533 | MS.gene07121:intron | 35.0% | |
| TGCAATATCTTAGCACTTGT+TGG | - | chr7.1:5233299-5233318 | MS.gene07121:intron | 35.0% | |
| TGCAGCAGAGATATATAGTT+TGG | - | chr7.1:5233995-5234014 | MS.gene07121:intron | 35.0% | |
| ! | AATATCTTAGCACTTGTTGG+TGG | - | chr7.1:5233302-5233321 | MS.gene07121:intron | 35.0% |
| ! | ATAATTTTGTTCACGTGGGT+TGG | - | chr7.1:5235226-5235245 | MS.gene07121:CDS | 35.0% |
| ! | CAAGTCTTATCCTGCTAAAT+AGG | + | chr7.1:5234255-5234274 | None:intergenic | 35.0% |
| ! | GTTAGCAGTTTCAAGTGATA+AGG | - | chr7.1:5234040-5234059 | MS.gene07121:intron | 35.0% |
| !!! | GATGTGGATTTTAGGTTAGA+AGG | - | chr7.1:5233964-5233983 | MS.gene07121:intron | 35.0% |
| !!! | TGTCCATGTTTTTAGCCTTA+AGG | - | chr7.1:5234067-5234086 | MS.gene07121:intron | 35.0% |
| !!! | TGTGGATTTTAGGTTAGAAG+GGG | - | chr7.1:5233966-5233985 | MS.gene07121:intron | 35.0% |
| AATTTGATGCAGCGAATGGA+GGG | - | chr7.1:5235403-5235422 | MS.gene07121:CDS | 40.0% | |
| ACTTTGTTAGGAGGATACTG+AGG | + | chr7.1:5233338-5233357 | None:intergenic | 40.0% | |
| ATGCCCAATGCATTTAGGAA+AGG | + | chr7.1:5235279-5235298 | None:intergenic | 40.0% | |
| CAAGTGCTAAGATATTGCAG+CGG | + | chr7.1:5233298-5233317 | None:intergenic | 40.0% | |
| CAGATCATGACTTTGTTAGG+AGG | + | chr7.1:5233347-5233366 | None:intergenic | 40.0% | |
| CCTGAGAATGAAACATCACA+AGG | - | chr7.1:5234107-5234126 | MS.gene07121:intron | 40.0% | |
| CCTTGTGATGTTTCATTCTC+AGG | + | chr7.1:5234110-5234129 | None:intergenic | 40.0% | |
| CTCCTAACAAAGTCATGATC+TGG | - | chr7.1:5233345-5233364 | MS.gene07121:intron | 40.0% | |
| CTGTGTGAATTTCTTGGATG+TGG | - | chr7.1:5233948-5233967 | MS.gene07121:intron | 40.0% | |
| CTTTGTTAGGAGGATACTGA+GGG | + | chr7.1:5233337-5233356 | None:intergenic | 40.0% | |
| GTCATAATTCTTGGCATGGA+TGG | - | chr7.1:5234497-5234516 | MS.gene07121:CDS | 40.0% | |
| TAATTCTTGGCATGGATGGA+AGG | - | chr7.1:5234501-5234520 | MS.gene07121:CDS | 40.0% | |
| TCCCAGATCATGACTTTGTT+AGG | + | chr7.1:5233350-5233369 | None:intergenic | 40.0% | |
| ! | ATGATCTGGGATGATCATCA+AGG | - | chr7.1:5233359-5233378 | MS.gene07121:intron | 40.0% |
| ! | GATCATCAAGGTACTTGCAT+CGG | - | chr7.1:5233371-5233390 | MS.gene07121:intron | 40.0% |
| ! | TAGTTTGGCGTTTTCTTCCA+CGG | - | chr7.1:5234010-5234029 | MS.gene07121:intron | 40.0% |
| !! | ACTCAGTACACAGTTGCTTT+TGG | - | chr7.1:5234458-5234477 | MS.gene07121:CDS | 40.0% |
| !! | TGTGGGCTATTGAGACATTT+TGG | - | chr7.1:5233920-5233939 | MS.gene07121:intron | 40.0% |
| AAGGAGAGTTGAAGAAGCGA+CGG | + | chr7.1:5233146-5233165 | None:intergenic | 45.0% | |
| ATCTGACCCTTATGCAAACC+AGG | + | chr7.1:5233587-5233606 | None:intergenic | 45.0% | |
| ATTCAGAGTGGTCAGTTGCT+CGG | - | chr7.1:5234417-5234436 | MS.gene07121:CDS | 45.0% | |
| ATTTGATGCAGCGAATGGAG+GGG | - | chr7.1:5235404-5235423 | MS.gene07121:CDS | 45.0% | |
| CAATTTGATGCAGCGAATGG+AGG | - | chr7.1:5235402-5235421 | MS.gene07121:CDS | 45.0% | |
| CTCCATTCGCTGCATCAAAT+TGG | + | chr7.1:5235404-5235423 | None:intergenic | 45.0% | |
| CTCTATTGTGAAGGGGAAAC+TGG | + | chr7.1:5235005-5235024 | None:intergenic | 45.0% | |
| GCAGAGTAACACTCATCAAC+AGG | + | chr7.1:5234368-5234387 | None:intergenic | 45.0% | |
| TCGTGATCGGATAATTGTGG+TGG | - | chr7.1:5233436-5233455 | MS.gene07121:intron | 45.0% | |
| TGATCGGATAATTGTGGTGG+TGG | - | chr7.1:5233439-5233458 | MS.gene07121:intron | 45.0% | |
| TGCCAATTTGATGCAGCGAA+TGG | - | chr7.1:5235399-5235418 | MS.gene07121:CDS | 45.0% | |
| ! | ATCTTAGCACTTGTTGGTGG+TGG | - | chr7.1:5233305-5233324 | MS.gene07121:intron | 45.0% |
| ! | GCTTGTCCTGGTTTGCATAA+GGG | - | chr7.1:5233578-5233597 | MS.gene07121:intron | 45.0% |
| ! | TGCTTGTCCTGGTTTGCATA+AGG | - | chr7.1:5233577-5233596 | MS.gene07121:intron | 45.0% |
| ! | TGGATGGAAGGTATGATACG+AGG | - | chr7.1:5234513-5234532 | MS.gene07121:CDS | 45.0% |
| AAGGAGCGAGATGAGCTAGA+AGG | + | chr7.1:5234161-5234180 | None:intergenic | 50.0% | |
| AATCGCAACTGCCAGTGTCA+AGG | - | chr7.1:5233700-5233719 | MS.gene07121:intron | 50.0% | |
| AATGAGCGTACCCTTGACAC+TGG | + | chr7.1:5233714-5233733 | None:intergenic | 50.0% | |
| AGAGTGACTGAATACGGGTG+TGG | - | chr7.1:5234803-5234822 | MS.gene07121:CDS | 50.0% | |
| AGATGAGCTAGAAGGGGCAA+TGG | + | chr7.1:5234153-5234172 | None:intergenic | 50.0% | |
| AGGAGCGAGATGAGCTAGAA+GGG | + | chr7.1:5234160-5234179 | None:intergenic | 50.0% | |
| ATCGCAACTGCCAGTGTCAA+GGG | - | chr7.1:5233701-5233720 | MS.gene07121:intron | 50.0% | |
| ATGGGTCGCAGTTGTAGATG+CGG | + | chr7.1:5233214-5233233 | None:intergenic | 50.0% | |
| GCGTCGTGATCGGATAATTG+TGG | - | chr7.1:5233433-5233452 | MS.gene07121:intron | 50.0% | |
| GCTCGGTTTCACTTGCATGA+GGG | - | chr7.1:5234434-5234453 | MS.gene07121:CDS | 50.0% | |
| GTTAGGAGGATACTGAGGGT+GGG | + | chr7.1:5233333-5233352 | None:intergenic | 50.0% | |
| TACTTGGGCAACACTCCTGA+AGG | + | chr7.1:5234392-5234411 | None:intergenic | 50.0% | |
| TCGTTTGCTCTCACGCTTGA+TGG | - | chr7.1:5233671-5233690 | MS.gene07121:intron | 50.0% | |
| TCTCTCGTTCTTGCTTGTCC+TGG | - | chr7.1:5233566-5233585 | MS.gene07121:intron | 50.0% | |
| TGCTCGGTTTCACTTGCATG+AGG | - | chr7.1:5234433-5234452 | MS.gene07121:CDS | 50.0% | |
| TGTTAGGAGGATACTGAGGG+TGG | + | chr7.1:5233334-5233353 | None:intergenic | 50.0% | |
| ! | GTGTCAAGGGTACGCTCATT+CGG | - | chr7.1:5233714-5233733 | MS.gene07121:intron | 50.0% |
| AACTGCTAACCAGTGAGCCG+TGG | + | chr7.1:5234030-5234049 | None:intergenic | 55.0% | |
| ACGCAATCGAACGCCACGAA+CGG | + | chr7.1:5233417-5233436 | None:intergenic | 55.0% | |
| GAACTCTTCCGCCGCGAATT+CGG | - | chr7.1:5233239-5233258 | MS.gene07121:intron | 55.0% | |
| GAGAGTTGAAGAAGCGACGG+AGG | + | chr7.1:5233143-5233162 | None:intergenic | 55.0% | |
| GCGTTCGATTGCGTCGTGAT+CGG | - | chr7.1:5233423-5233442 | MS.gene07121:intron | 55.0% | |
| GGAGCGAGATGAGCTAGAAG+GGG | + | chr7.1:5234159-5234178 | None:intergenic | 55.0% | |
| ! | CGTTTTCTTCCACGGCTCAC+TGG | - | chr7.1:5234018-5234037 | MS.gene07121:intron | 55.0% |
| ! | GAGTGTTACTCTGCGCCTTC+AGG | - | chr7.1:5234374-5234393 | MS.gene07121:CDS | 55.0% |
| ! | GCAGGCGTGGTCTTGGTTAA+AGG | + | chr7.1:5233165-5233184 | None:intergenic | 55.0% |
| !! | TGATAGCGGCACGCTACTTC+AGG | - | chr7.1:5233748-5233767 | MS.gene07121:intron | 55.0% |
| ATTCGCGGCGGAAGAGTTCG+CGG | + | chr7.1:5233238-5233257 | None:intergenic | 60.0% | |
| CAATCGAACGCCACGAACGG+CGG | + | chr7.1:5233414-5233433 | None:intergenic | 60.0% | |
| GATGCGGAAGCCGTTGTCTG+TGG | + | chr7.1:5233198-5233217 | None:intergenic | 60.0% | |
| GCGGAAGGGGATTGAGGTTG+GGG | + | chr7.1:5233101-5233120 | None:intergenic | 60.0% | |
| GGCGGAAGAGTTCGCGGAAT+GGG | + | chr7.1:5233232-5233251 | None:intergenic | 60.0% | |
| GGCGGAAGGGGATTGAGGTT+GGG | + | chr7.1:5233102-5233121 | None:intergenic | 60.0% | |
| TGAAGAAGCGACGGAGGCAG+CGG | + | chr7.1:5233137-5233156 | None:intergenic | 60.0% | |
| TGGCGGAAGGGGATTGAGGT+TGG | + | chr7.1:5233103-5233122 | None:intergenic | 60.0% | |
| TTCCTCCACCGCCGAATTCG+CGG | + | chr7.1:5233253-5233272 | None:intergenic | 60.0% | |
| CGGCGGAAGAGTTCGCGGAA+TGG | + | chr7.1:5233233-5233252 | None:intergenic | 65.0% | |
| CTCTTCCGCCGCGAATTCGG+CGG | - | chr7.1:5233242-5233261 | MS.gene07121:intron | 65.0% | |
| GAAGCCGTTGTCTGTGGCGG+CGG | + | chr7.1:5233192-5233211 | None:intergenic | 65.0% | |
| GCGGAAGCCGTTGTCTGTGG+CGG | + | chr7.1:5233195-5233214 | None:intergenic | 65.0% | |
| TTCGCCGCCGCCACAGACAA+CGG | - | chr7.1:5233185-5233204 | MS.gene07121:intron | 65.0% | |
| !! | GTGGTGGCGGAAGGGGATTG+AGG | + | chr7.1:5233107-5233126 | None:intergenic | 65.0% |
| AGAAGCGACGGAGGCAGCGG+CGG | + | chr7.1:5233134-5233153 | None:intergenic | 70.0% | |
| CGGCGAAGCAGGCGTGGTCT+TGG | + | chr7.1:5233172-5233191 | None:intergenic | 70.0% | |
| CTCCACCGCCGAATTCGCGG+CGG | + | chr7.1:5233250-5233269 | None:intergenic | 70.0% | |
| GAACGCCACGAACGGCGGCA+CGG | + | chr7.1:5233409-5233428 | None:intergenic | 70.0% | |
| TCCTTCCGTGCCGCCGTTCG+TGG | - | chr7.1:5233401-5233420 | MS.gene07121:intron | 70.0% | |
| TTCCGCCGCGAATTCGGCGG+TGG | - | chr7.1:5233245-5233264 | MS.gene07121:intron | 70.0% | |
| !! | CGGTGTGGTGGTGGCGGAAG+GGG | + | chr7.1:5233114-5233133 | None:intergenic | 70.0% |
| !! | GCGGTGTGGTGGTGGCGGAA+GGG | + | chr7.1:5233115-5233134 | None:intergenic | 70.0% |
| AGGCAGCGGCGGTGTGGTGG+TGG | + | chr7.1:5233123-5233142 | None:intergenic | 75.0% | |
| CGCCGCGAATTCGGCGGTGG+AGG | - | chr7.1:5233248-5233267 | MS.gene07121:intron | 75.0% | |
| GCCACGAACGGCGGCACGGA+AGG | + | chr7.1:5233405-5233424 | None:intergenic | 75.0% | |
| GTCTGTGGCGGCGGCGAAGC+AGG | + | chr7.1:5233183-5233202 | None:intergenic | 75.0% | |
| !! | CAGCGGCGGTGTGGTGGTGG+CGG | + | chr7.1:5233120-5233139 | None:intergenic | 75.0% |
| !! | GGCGGTGTGGTGGTGGCGGA+AGG | + | chr7.1:5233116-5233135 | None:intergenic | 75.0% |
| ! | CGACGGAGGCAGCGGCGGTG+TGG | + | chr7.1:5233129-5233148 | None:intergenic | 80.0% |
| ! | CGGAGGCAGCGGCGGTGTGG+TGG | + | chr7.1:5233126-5233145 | None:intergenic | 80.0% |
| ! | TGGCGGCGGCGAAGCAGGCG+TGG | + | chr7.1:5233178-5233197 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5233092 | 5235432 | 5233092 | ID=MS.gene07121 |
| chr7.1 | mRNA | 5233092 | 5235432 | 5233092 | ID=MS.gene07121.t1;Parent=MS.gene07121 |
| chr7.1 | exon | 5234752 | 5235432 | 5234752 | ID=MS.gene07121.t1.exon1;Parent=MS.gene07121.t1 |
| chr7.1 | CDS | 5234752 | 5235432 | 5234752 | ID=cds.MS.gene07121.t1;Parent=MS.gene07121.t1 |
| chr7.1 | exon | 5234330 | 5234546 | 5234330 | ID=MS.gene07121.t1.exon2;Parent=MS.gene07121.t1 |
| chr7.1 | CDS | 5234330 | 5234546 | 5234330 | ID=cds.MS.gene07121.t1;Parent=MS.gene07121.t1 |
| chr7.1 | exon | 5233092 | 5233135 | 5233092 | ID=MS.gene07121.t1.exon3;Parent=MS.gene07121.t1 |
| chr7.1 | CDS | 5233092 | 5233135 | 5233092 | ID=cds.MS.gene07121.t1;Parent=MS.gene07121.t1 |
| Gene Sequence |
| Protein sequence |
