Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071288.t1 | RHN44987.1 | 94.5 | 253 | 11 | 1 | 1 | 250 | 1 | 253 | 7.20E-129 | 469.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071288.t1 | Q7ZZ00 | 33.8 | 231 | 128 | 5 | 13 | 227 | 49 | 270 | 9.8e-26 | 118.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071288.t1 | A0A396H268 | 94.5 | 253 | 11 | 1 | 1 | 250 | 1 | 253 | 5.2e-129 | 469.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene071288.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051594 | MS.gene071288 | 0.82087 | 5.46E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071288.t1 | MTR_7g029095 | 81.028 | 253 | 11 | 2 | 1 | 250 | 1 | 219 | 3.39e-145 | 405 |
| MS.gene071288.t1 | MTR_7g029090 | 97.354 | 189 | 5 | 0 | 62 | 250 | 3 | 191 | 1.49e-137 | 384 |
| MS.gene071288.t1 | MTR_7g029065 | 77.477 | 111 | 23 | 2 | 133 | 242 | 429 | 538 | 5.00e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071288.t1 | AT5G14140 | 62.348 | 247 | 81 | 5 | 11 | 246 | 14 | 259 | 1.52e-106 | 309 |
Find 60 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.194231 | 7.1:-68178570 | MS.gene071288:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | 7.1:-68178719 | MS.gene071288:CDS |
| TGCTGGGTGTGGAGCACGTT+TGG | 0.380745 | 7.1:-68178702 | MS.gene071288:CDS |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.386367 | 7.1:+68177481 | None:intergenic |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.397837 | 7.1:-68178713 | MS.gene071288:CDS |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | 7.1:+68177317 | None:intergenic |
| CAGAACGGAAAATTTGAATC+CGG | 0.405243 | 7.1:+68179967 | None:intergenic |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | 7.1:-68177439 | MS.gene071288:CDS |
| GGTTGAAACTTTCGAGGAAT+GGG | 0.420035 | 7.1:+68179940 | None:intergenic |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.437900 | 7.1:-68179893 | MS.gene071288:intron |
| ACTCCTTCCTCTATCAGCTT+TGG | 0.443914 | 7.1:-68177343 | MS.gene071288:CDS |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | 7.1:+68178631 | None:intergenic |
| CATATAGTATGAATGCTTAG+TGG | 0.459258 | 7.1:-68177605 | MS.gene071288:intron |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | 7.1:-68178718 | MS.gene071288:CDS |
| GGGTTGAAACTTTCGAGGAA+TGG | 0.465357 | 7.1:+68179939 | None:intergenic |
| AGCACGTTTGGCTTCAATTG+AGG | 0.468334 | 7.1:-68178690 | MS.gene071288:CDS |
| GGAGGATACTTCAGGAATGA+TGG | 0.477569 | 7.1:-68177431 | MS.gene071288:CDS |
| AGGGACAAATGACATGCCTT+TGG | 0.480905 | 7.1:+68177309 | None:intergenic |
| GGAAGTGGAAAATCAAAATC+CGG | 0.482912 | 7.1:-68179986 | MS.gene071288:CDS |
| TGACAAGAAGTTCTCGTTCG+AGG | 0.493301 | 7.1:+68179899 | None:intergenic |
| CGAGGAATGGGTTTCCAGAA+CGG | 0.497494 | 7.1:+68179952 | None:intergenic |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | 7.1:-68177567 | MS.gene071288:CDS |
| GAGGTCGAAGAAAGGTGAAT+CGG | 0.499895 | 7.1:+68179918 | None:intergenic |
| CGATCTGTTCAGCGTGGGAA+GGG | 0.502600 | 7.1:-68177286 | MS.gene071288:CDS |
| CGTGCTCCACACCCAGCAAT+GGG | 0.505775 | 7.1:+68178707 | None:intergenic |
| ACAAGAGAAGGAACAGTTTG+AGG | 0.507962 | 7.1:-68179752 | MS.gene071288:CDS |
| TTAATTTGAAAAGGTTGCGT+TGG | 0.527267 | 7.1:-68179788 | MS.gene071288:intron |
| AGGTCGAAGAAAGGTGAATC+GGG | 0.535012 | 7.1:+68179919 | None:intergenic |
| TCGATCTGTTCAGCGTGGGA+AGG | 0.537669 | 7.1:-68177287 | MS.gene071288:CDS |
| TCTCGTTCGAGGTCGAAGAA+AGG | 0.539773 | 7.1:+68179910 | None:intergenic |
| GCGTGGGAAGGGATCTAACT+CGG | 0.545220 | 7.1:-68177275 | MS.gene071288:CDS |
| TCCCTCGATCTGTTCAGCGT+GGG | 0.552242 | 7.1:-68177291 | MS.gene071288:CDS |
| ATTTGAATTAACACAAGAGA+AGG | 0.553168 | 7.1:-68179764 | MS.gene071288:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.556458 | 7.1:-68177486 | MS.gene071288:CDS |
| TAGTATGAATGCTTAGTGGA+AGG | 0.559115 | 7.1:-68177601 | MS.gene071288:CDS |
| ACGTGCTCCACACCCAGCAA+TGG | 0.559174 | 7.1:+68178706 | None:intergenic |
| ACGGCGACCAAAGCTGATAG+AGG | 0.559633 | 7.1:+68177336 | None:intergenic |
| GAATCGGGTTGAAACTTTCG+AGG | 0.559876 | 7.1:+68179934 | None:intergenic |
| TACTTCAGGAATGATGGAAG+TGG | 0.560728 | 7.1:-68177425 | MS.gene071288:CDS |
| GGAAGTGGAAAATGCAGCTA+TGG | 0.560741 | 7.1:-68177410 | MS.gene071288:CDS |
| CGTGGGAAGGGATCTAACTC+GGG | 0.575940 | 7.1:-68177274 | MS.gene071288:CDS |
| ACTTGATACAAGAGGATGGA+AGG | 0.580239 | 7.1:-68179729 | MS.gene071288:intron |
| GGTTGAACTAACGATGGAAG+TGG | 0.586593 | 7.1:-68180001 | None:intergenic |
| AGTATGAATGCTTAGTGGAA+GGG | 0.595383 | 7.1:-68177600 | MS.gene071288:CDS |
| GTCCCTCGATCTGTTCAGCG+TGG | 0.596841 | 7.1:-68177292 | MS.gene071288:CDS |
| GAATGCTTAGTGGAAGGGTG+CGG | 0.598441 | 7.1:-68177595 | MS.gene071288:CDS |
| AGTATCTAGATTAAATACTT+CGG | 0.598587 | 7.1:-68177371 | MS.gene071288:CDS |
| CGACCAAAGCTGATAGAGGA+AGG | 0.601809 | 7.1:+68177340 | None:intergenic |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | 7.1:+68178604 | None:intergenic |
| TTTCAGGCAAAAGTTGCTCG+TGG | 0.610110 | 7.1:-68178554 | MS.gene071288:CDS |
| GAGGACTTGATACAAGAGGA+TGG | 0.612431 | 7.1:-68179733 | MS.gene071288:CDS |
| GTTTGAGGACTTGATACAAG+AGG | 0.614127 | 7.1:-68179737 | MS.gene071288:CDS |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | 7.1:-68177325 | MS.gene071288:CDS |
| TTCCCACGCTGAACAGATCG+AGG | 0.620725 | 7.1:+68177289 | None:intergenic |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | 7.1:+68178605 | None:intergenic |
| AGTTGCTCGTGGCTATGACA+TGG | 0.638718 | 7.1:-68178543 | MS.gene071288:intron |
| AAAGCTGATAGAGGAAGGAG+TGG | 0.665134 | 7.1:+68177345 | None:intergenic |
| TCCCACGCTGAACAGATCGA+GGG | 0.670460 | 7.1:+68177290 | None:intergenic |
| ATCTAGATACTGCTGAAACG+AGG | 0.692577 | 7.1:+68177383 | None:intergenic |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | 7.1:+68178606 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAATTAAATCATATT+TGG | + | chr7.1:68178742-68178761 | None:intergenic | 10.0% |
| !! | TTGAATTTATACTTATAAAA+TGG | - | chr7.1:68178456-68178475 | MS.gene071288:intron | 10.0% |
| !!! | ATTTGTAAGATTTTAAATTA+AGG | + | chr7.1:68178850-68178869 | None:intergenic | 10.0% |
| !! | AAATAACCAAATTGTAAAAA+AGG | + | chr7.1:68178887-68178906 | None:intergenic | 15.0% |
| !! | AACTAAAATAGTAAACAAAA+AGG | + | chr7.1:68179271-68179290 | None:intergenic | 15.0% |
| !! | GTTATAGATAATTAATGATA+GGG | - | chr7.1:68179426-68179445 | MS.gene071288:intron | 15.0% |
| !! | TATATCTATAATCATTTATG+TGG | - | chr7.1:68178225-68178244 | MS.gene071288:intron | 15.0% |
| !! | TGTTATAGATAATTAATGAT+AGG | - | chr7.1:68179425-68179444 | MS.gene071288:intron | 15.0% |
| !!! | ACAAATGAATTTTATCTATT+AGG | - | chr7.1:68179569-68179588 | MS.gene071288:intron | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | chr7.1:68178744-68178763 | MS.gene071288:intron | 15.0% |
| !! | AAGAAATATGTTACAAAATG+AGG | + | chr7.1:68178493-68178512 | None:intergenic | 20.0% |
| !! | AAGAAGGATTTCAAATTAAA+TGG | - | chr7.1:68179397-68179416 | MS.gene071288:intron | 20.0% |
| !! | AGATAGAAATGATGTAATAA+AGG | + | chr7.1:68178936-68178955 | None:intergenic | 20.0% |
| !! | AGTATCTAGATTAAATACTT+CGG | - | chr7.1:68179869-68179888 | MS.gene071288:intron | 20.0% |
| !! | ATTTATATTCTCGATTAATG+TGG | - | chr7.1:68177591-68177610 | MS.gene071288:CDS | 20.0% |
| !! | TAATTTAATGCACAGTTATT+AGG | - | chr7.1:68178044-68178063 | MS.gene071288:intron | 20.0% |
| !! | TTATTACGTAGAGATAATAT+GGG | + | chr7.1:68179203-68179222 | None:intergenic | 20.0% |
| !!! | AAACATTTTCAAGAACTATA+AGG | + | chr7.1:68178201-68178220 | None:intergenic | 20.0% |
| !!! | ATGATTTTGAAATCAAAGAT+TGG | + | chr7.1:68179128-68179147 | None:intergenic | 20.0% |
| !!! | GTAAGATTTTAAATTAAGGT+AGG | + | chr7.1:68178846-68178865 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAATCAAAGATT+GGG | + | chr7.1:68179127-68179146 | None:intergenic | 20.0% |
| ! | AAATGACAATCTCTATAACA+TGG | - | chr7.1:68179599-68179618 | MS.gene071288:intron | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | chr7.1:68179673-68179692 | MS.gene071288:intron | 25.0% |
| ! | ATTTGAATTAACACAAGAGA+AGG | - | chr7.1:68177476-68177495 | MS.gene071288:CDS | 25.0% |
| ! | GTTATTACGTAGAGATAATA+TGG | + | chr7.1:68179204-68179223 | None:intergenic | 25.0% |
| ! | TATAGGTCAAATCATTAAGA+AGG | - | chr7.1:68179381-68179400 | MS.gene071288:intron | 25.0% |
| ! | TATTAAACAAGCGATGTATT+TGG | + | chr7.1:68177958-68177977 | None:intergenic | 25.0% |
| ! | TGAGTTTGATGAAATCATAA+TGG | - | chr7.1:68178288-68178307 | MS.gene071288:intron | 25.0% |
| ! | TGCTTATAAATGTGATTAGA+GGG | - | chr7.1:68177997-68178016 | MS.gene071288:intron | 25.0% |
| ! | TGGTTAATAAGCTTCAATTA+AGG | - | chr7.1:68177717-68177736 | MS.gene071288:intron | 25.0% |
| ! | TGTTGATATAAGATACACTT+TGG | + | chr7.1:68178335-68178354 | None:intergenic | 25.0% |
| ! | TTGCTTATAAATGTGATTAG+AGG | - | chr7.1:68177996-68178015 | MS.gene071288:intron | 25.0% |
| ! | TTTGTTAGAAGGTAGATTAA+AGG | - | chr7.1:68178993-68179012 | MS.gene071288:intron | 25.0% |
| !! | ATTCTAAATCCTTGATGATT+AGG | + | chr7.1:68179069-68179088 | None:intergenic | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | chr7.1:68178431-68178450 | MS.gene071288:intron | 25.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | chr7.1:68177443-68177462 | MS.gene071288:CDS | 25.0% |
| !!! | ATTTTCAAGAACTATAAGGA+AGG | + | chr7.1:68178197-68178216 | None:intergenic | 25.0% |
| !!! | GAAAGACCTTTTTTACAATT+TGG | - | chr7.1:68178878-68178897 | MS.gene071288:intron | 25.0% |
| AAAGCCAAAGATTAACTTCT+AGG | + | chr7.1:68178438-68178457 | None:intergenic | 30.0% | |
| AACTATAGTCCTAATCATCA+AGG | - | chr7.1:68179057-68179076 | MS.gene071288:intron | 30.0% | |
| ACTATATGATTGTGCTTTAG+TGG | - | chr7.1:68177697-68177716 | MS.gene071288:intron | 30.0% | |
| ACTTATCGTGAATTCAAACA+TGG | - | chr7.1:68178383-68178402 | MS.gene071288:intron | 30.0% | |
| AGAGAGAAATTCATCAACAT+TGG | + | chr7.1:68179239-68179258 | None:intergenic | 30.0% | |
| CATATAGTATGAATGCTTAG+TGG | - | chr7.1:68179635-68179654 | MS.gene071288:intron | 30.0% | |
| GTAACATATTTCTTTGTGCA+GGG | - | chr7.1:68178499-68178518 | MS.gene071288:intron | 30.0% | |
| GTTTGAATTCACGATAAGTA+TGG | + | chr7.1:68178382-68178401 | None:intergenic | 30.0% | |
| TGCTTATAAATATGACCAGA+GGG | + | chr7.1:68177880-68177899 | None:intergenic | 30.0% | |
| TGTAACATATTTCTTTGTGC+AGG | - | chr7.1:68178498-68178517 | MS.gene071288:intron | 30.0% | |
| TTCACTTTACCACTAACAAA+TGG | + | chr7.1:68179028-68179047 | None:intergenic | 30.0% | |
| TTGCTTATAAATATGACCAG+AGG | + | chr7.1:68177881-68177900 | None:intergenic | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | chr7.1:68179762-68179781 | None:intergenic | 30.0% | |
| ! | AAAGATAGTCCATTTGTTAG+TGG | - | chr7.1:68179016-68179035 | MS.gene071288:intron | 30.0% |
| ! | ATAGTTGAGTGTTTGTTAGA+AGG | - | chr7.1:68178982-68179001 | MS.gene071288:intron | 30.0% |
| ! | ATTAGGACTATAGTTTTCTC+TGG | + | chr7.1:68179052-68179071 | None:intergenic | 30.0% |
| ! | TCTTTTTGTGGAAAGGTTAT+TGG | + | chr7.1:68179152-68179171 | None:intergenic | 30.0% |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | chr7.1:68177452-68177471 | MS.gene071288:CDS | 30.0% |
| !! | GTGGAAAAACACATTTTGAT+TGG | - | chr7.1:68178244-68178263 | MS.gene071288:intron | 30.0% |
| !! | TTAGGTGTTACTTAAACTTC+AGG | - | chr7.1:68178062-68178081 | MS.gene071288:intron | 30.0% |
| AACAACAACAACAACAACAG+AGG | + | chr7.1:68179513-68179532 | None:intergenic | 35.0% | |
| ACGCAAAAAACCTTCTCAAA+AGG | - | chr7.1:68179788-68179807 | MS.gene071288:intron | 35.0% | |
| AGAAAAGGACTCTGGTAATA+TGG | + | chr7.1:68177815-68177834 | None:intergenic | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | chr7.1:68178670-68178689 | MS.gene071288:CDS | 35.0% | |
| AGTATGAATGCTTAGTGGAA+GGG | - | chr7.1:68179640-68179659 | MS.gene071288:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | chr7.1:68179343-68179362 | MS.gene071288:intron | 35.0% | |
| CAAAAAACCTTCTCAAAAGG+AGG | - | chr7.1:68179791-68179810 | MS.gene071288:intron | 35.0% | |
| CAATAGTTGTTCTTCGAACT+CGG | + | chr7.1:68177762-68177781 | None:intergenic | 35.0% | |
| CACAATCTTCAACAAAGATG+AGG | + | chr7.1:68178409-68178428 | None:intergenic | 35.0% | |
| CAGAACGGAAAATTTGAATC+CGG | + | chr7.1:68177276-68177295 | None:intergenic | 35.0% | |
| CATCATTACCTGTTTGCAAA+GGG | + | chr7.1:68178119-68178138 | None:intergenic | 35.0% | |
| GGAAGTGGAAAATCAAAATC+CGG | - | chr7.1:68177254-68177273 | MS.gene071288:CDS | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | chr7.1:68179344-68179363 | MS.gene071288:intron | 35.0% | |
| TAAATGTGATTAGAGGGAGT+AGG | - | chr7.1:68178003-68178022 | MS.gene071288:intron | 35.0% | |
| TAGTATGAATGCTTAGTGGA+AGG | - | chr7.1:68179639-68179658 | MS.gene071288:intron | 35.0% | |
| TGGTAATATGGAATTACGCT+GGG | + | chr7.1:68177803-68177822 | None:intergenic | 35.0% | |
| TTGAAAAACTCGAATGACGT+CGG | + | chr7.1:68179729-68179748 | None:intergenic | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | + | chr7.1:68178316-68178335 | None:intergenic | 35.0% | |
| ! | CTATGACATGGTAGTGTATA+TGG | - | chr7.1:68178709-68178728 | MS.gene071288:CDS | 35.0% |
| ! | GTAGAGATAATATGGGTTGT+TGG | + | chr7.1:68179196-68179215 | None:intergenic | 35.0% |
| ! | TAATATGGGTTGTTGGAATG+TGG | + | chr7.1:68179189-68179208 | None:intergenic | 35.0% |
| !! | ATTCTAGTTCTCCAGAGAAA+AGG | + | chr7.1:68177830-68177849 | None:intergenic | 35.0% |
| !!! | GTCATTCGAGTTTTTCAAGA+AGG | - | chr7.1:68179731-68179750 | MS.gene071288:CDS | 35.0% |
| AAAGATAGACGAACACAACG+AGG | + | chr7.1:68177666-68177685 | None:intergenic | 40.0% | |
| ACAAGAGAAGGAACAGTTTG+AGG | - | chr7.1:68177488-68177507 | MS.gene071288:CDS | 40.0% | |
| ACGAGAACTTCTTGTCAAAC+AGG | - | chr7.1:68177347-68177366 | MS.gene071288:CDS | 40.0% | |
| ACTTGATACAAGAGGATGGA+AGG | - | chr7.1:68177511-68177530 | MS.gene071288:CDS | 40.0% | |
| AGGGAGTAGGCATTAGAATA+AGG | - | chr7.1:68178016-68178035 | MS.gene071288:intron | 40.0% | |
| ATCTAGATACTGCTGAAACG+AGG | + | chr7.1:68179860-68179879 | None:intergenic | 40.0% | |
| CAATTAAGGACGAATCGATC+AGG | - | chr7.1:68177731-68177750 | MS.gene071288:intron | 40.0% | |
| CCATCATTACCTGTTTGCAA+AGG | + | chr7.1:68178120-68178139 | None:intergenic | 40.0% | |
| CCTTTGCAAACAGGTAATGA+TGG | - | chr7.1:68178117-68178136 | MS.gene071288:intron | 40.0% | |
| CTATTGGACTGTCTTCCATT+TGG | + | chr7.1:68179333-68179352 | None:intergenic | 40.0% | |
| CTCCCTTTACCTCTAACTAT+TGG | + | chr7.1:68179349-68179368 | None:intergenic | 40.0% | |
| CTGGTAATATGGAATTACGC+TGG | + | chr7.1:68177804-68177823 | None:intergenic | 40.0% | |
| GAAGACAGTCCAATAGTTAG+AGG | - | chr7.1:68179337-68179356 | MS.gene071288:intron | 40.0% | |
| GACCAAAATAATACTCCCTC+TGG | - | chr7.1:68177862-68177881 | MS.gene071288:intron | 40.0% | |
| GATCATTACCCTTTGCAAAC+AGG | - | chr7.1:68178108-68178127 | MS.gene071288:intron | 40.0% | |
| GGCTTATAAGACCTCAATCT+CGG | - | chr7.1:68177612-68177631 | MS.gene071288:intron | 40.0% | |
| GGTTGAAACTTTCGAGGAAT+GGG | + | chr7.1:68177303-68177322 | None:intergenic | 40.0% | |
| GTTTGAGGACTTGATACAAG+AGG | - | chr7.1:68177503-68177522 | MS.gene071288:CDS | 40.0% | |
| TAACCTCGTCTGATGAGAAA+AGG | - | chr7.1:68179478-68179497 | MS.gene071288:intron | 40.0% | |
| TAATATGGAATTACGCTGGG+AGG | + | chr7.1:68177800-68177819 | None:intergenic | 40.0% | |
| TCATAGTTGCGTTTGTCAGA+AGG | - | chr7.1:68179303-68179322 | MS.gene071288:intron | 40.0% | |
| TCTCAAAAGGAGGATACTTC+AGG | - | chr7.1:68179801-68179820 | MS.gene071288:intron | 40.0% | |
| TGAAAAACTCGAATGACGTC+GGG | + | chr7.1:68179728-68179747 | None:intergenic | 40.0% | |
| TGTTGGAATGTGGTGTGTTT+GGG | + | chr7.1:68179179-68179198 | None:intergenic | 40.0% | |
| TTGTCAGAAGGTAGACCAAA+TGG | - | chr7.1:68179315-68179334 | MS.gene071288:intron | 40.0% | |
| TTGTTGGAATGTGGTGTGTT+TGG | + | chr7.1:68179180-68179199 | None:intergenic | 40.0% | |
| ! | ATTACCAGAGTCCTTTTCTC+TGG | - | chr7.1:68177816-68177835 | MS.gene071288:intron | 40.0% |
| ! | CGGATTCAAATTTTCCGTTC+TGG | - | chr7.1:68177274-68177293 | MS.gene071288:CDS | 40.0% |
| ! | TACTTCAGGAATGATGGAAG+TGG | - | chr7.1:68179815-68179834 | MS.gene071288:intron | 40.0% |
| ! | TGTTTGGGCGTTTCTTTTTG+TGG | + | chr7.1:68179164-68179183 | None:intergenic | 40.0% |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | chr7.1:68179926-68179945 | None:intergenic | 40.0% |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | chr7.1:68179801-68179820 | None:intergenic | 40.0% |
| !!! | GACCAGAGGGAGTATTATTT+TGG | + | chr7.1:68177867-68177886 | None:intergenic | 40.0% |
| AAAGCTGATAGAGGAAGGAG+TGG | + | chr7.1:68179898-68179917 | None:intergenic | 45.0% | |
| AAGTCTTCTGTCCCATTGCT+GGG | - | chr7.1:68178522-68178541 | MS.gene071288:intron | 45.0% | |
| ACTCCTTCCTCTATCAGCTT+TGG | - | chr7.1:68179897-68179916 | MS.gene071288:CDS | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | chr7.1:68179934-68179953 | None:intergenic | 45.0% | |
| AGGTCGAAGAAAGGTGAATC+GGG | + | chr7.1:68177324-68177343 | None:intergenic | 45.0% | |
| ATGCTGAGCAAACGTGATGT+GGG | + | chr7.1:68178638-68178657 | None:intergenic | 45.0% | |
| CGTCTGATGAGAAAAGGCTT+TGG | - | chr7.1:68179484-68179503 | MS.gene071288:intron | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | chr7.1:68179754-68179773 | MS.gene071288:CDS | 45.0% | |
| GAGGACTTGATACAAGAGGA+TGG | - | chr7.1:68177507-68177526 | MS.gene071288:CDS | 45.0% | |
| GAGGTCGAAGAAAGGTGAAT+CGG | + | chr7.1:68177325-68177344 | None:intergenic | 45.0% | |
| GGAAGTGGAAAATGCAGCTA+TGG | - | chr7.1:68179830-68179849 | MS.gene071288:intron | 45.0% | |
| GGAGGATACTTCAGGAATGA+TGG | - | chr7.1:68179809-68179828 | MS.gene071288:intron | 45.0% | |
| GGGAGACTAGAGAAAGCTAT+AGG | - | chr7.1:68179364-68179383 | MS.gene071288:intron | 45.0% | |
| GGGTTGAAACTTTCGAGGAA+TGG | + | chr7.1:68177304-68177323 | None:intergenic | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | chr7.1:68178639-68178658 | None:intergenic | 45.0% | |
| TGACAAGAAGTTCTCGTTCG+AGG | + | chr7.1:68177344-68177363 | None:intergenic | 45.0% | |
| TTCTCCAGAGAAAAGGACTC+TGG | + | chr7.1:68177823-68177842 | None:intergenic | 45.0% | |
| TTTCAGGCAAAAGTTGCTCG+TGG | - | chr7.1:68178686-68178705 | MS.gene071288:CDS | 45.0% | |
| ! | AAGCCTTTTCTCATCAGACG+AGG | + | chr7.1:68179484-68179503 | None:intergenic | 45.0% |
| ! | AGCACGTTTGGCTTCAATTG+AGG | - | chr7.1:68178550-68178569 | MS.gene071288:CDS | 45.0% |
| ! | GGGCGTTTCTTTTTGTGGAA+AGG | + | chr7.1:68179159-68179178 | None:intergenic | 45.0% |
| !! | GAATCGGGTTGAAACTTTCG+AGG | + | chr7.1:68177309-68177328 | None:intergenic | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | chr7.1:68178612-68178631 | None:intergenic | 45.0% |
| AGTTGCTCGTGGCTATGACA+TGG | - | chr7.1:68178697-68178716 | MS.gene071288:CDS | 50.0% | |
| CGACCAAAGCTGATAGAGGA+AGG | + | chr7.1:68179903-68179922 | None:intergenic | 50.0% | |
| GAACACAACGAGGATCGCAA+AGG | + | chr7.1:68177656-68177675 | None:intergenic | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | chr7.1:68178521-68178540 | MS.gene071288:intron | 50.0% | |
| GAATGCTTAGTGGAAGGGTG+CGG | - | chr7.1:68179645-68179664 | MS.gene071288:intron | 50.0% | |
| TCTCGTTCGAGGTCGAAGAA+AGG | + | chr7.1:68177333-68177352 | None:intergenic | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | chr7.1:68178637-68178656 | None:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | chr7.1:68179915-68179934 | MS.gene071288:CDS | 50.0% | |
| ! | CGAGGAATGGGTTTCCAGAA+CGG | + | chr7.1:68177291-68177310 | None:intergenic | 50.0% |
| ACGGCGACCAAAGCTGATAG+AGG | + | chr7.1:68179907-68179926 | None:intergenic | 55.0% | |
| ACGTCTCTGCACCGAGATTG+AGG | + | chr7.1:68177626-68177645 | None:intergenic | 55.0% | |
| CGATCTGTTCAGCGTGGGAA+GGG | - | chr7.1:68179954-68179973 | MS.gene071288:CDS | 55.0% | |
| CGTGGGAAGGGATCTAACTC+GGG | - | chr7.1:68179966-68179985 | MS.gene071288:CDS | 55.0% | |
| GCGTGGGAAGGGATCTAACT+CGG | - | chr7.1:68179965-68179984 | MS.gene071288:CDS | 55.0% | |
| TCCCACGCTGAACAGATCGA+GGG | + | chr7.1:68179953-68179972 | None:intergenic | 55.0% | |
| TCCCTCGATCTGTTCAGCGT+GGG | - | chr7.1:68179949-68179968 | MS.gene071288:CDS | 55.0% | |
| TCGATCTGTTCAGCGTGGGA+AGG | - | chr7.1:68179953-68179972 | MS.gene071288:CDS | 55.0% | |
| TTCCCACGCTGAACAGATCG+AGG | + | chr7.1:68179954-68179973 | None:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | chr7.1:68178527-68178546 | MS.gene071288:intron | 55.0% | |
| ACGTGCTCCACACCCAGCAA+TGG | + | chr7.1:68178537-68178556 | None:intergenic | 60.0% | |
| CGTGCTCCACACCCAGCAAT+GGG | + | chr7.1:68178536-68178555 | None:intergenic | 60.0% | |
| GTCCCTCGATCTGTTCAGCG+TGG | - | chr7.1:68179948-68179967 | MS.gene071288:CDS | 60.0% | |
| TGCTGGGTGTGGAGCACGTT+TGG | - | chr7.1:68178538-68178557 | MS.gene071288:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 68177252 | 68180010 | 68177252 | ID=MS.gene071288 |
| chr7.1 | mRNA | 68177252 | 68180010 | 68177252 | ID=MS.gene071288.t1;Parent=MS.gene071288 |
| chr7.1 | exon | 68179894 | 68180010 | 68179894 | ID=MS.gene071288.t1.exon1;Parent=MS.gene071288.t1 |
| chr7.1 | CDS | 68179894 | 68180010 | 68179894 | ID=cds.MS.gene071288.t1;Parent=MS.gene071288.t1 |
| chr7.1 | exon | 68179730 | 68179797 | 68179730 | ID=MS.gene071288.t1.exon2;Parent=MS.gene071288.t1 |
| chr7.1 | CDS | 68179730 | 68179797 | 68179730 | ID=cds.MS.gene071288.t1;Parent=MS.gene071288.t1 |
| chr7.1 | exon | 68178544 | 68178742 | 68178544 | ID=MS.gene071288.t1.exon3;Parent=MS.gene071288.t1 |
| chr7.1 | CDS | 68178544 | 68178742 | 68178544 | ID=cds.MS.gene071288.t1;Parent=MS.gene071288.t1 |
| chr7.1 | exon | 68177252 | 68177620 | 68177252 | ID=MS.gene071288.t1.exon4;Parent=MS.gene071288.t1 |
| chr7.1 | CDS | 68177252 | 68177620 | 68177252 | ID=cds.MS.gene071288.t1;Parent=MS.gene071288.t1 |
| Gene Sequence |
| Protein sequence |
