Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07134.t1 | AES82100.2 | 96.7 | 1609 | 50 | 3 | 22 | 1628 | 58 | 1665 | 0.00E+00 | 2871.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07134.t1 | Q8BMD7 | 44.9 | 49 | 26 | 1 | 623 | 671 | 420 | 467 | 3.9e-06 | 56.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07134.t1 | G7KRS9 | 96.7 | 1609 | 50 | 3 | 22 | 1628 | 58 | 1665 | 0.0e+00 | 2871.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057682 | MS.gene07134 | 0.842452 | 2.56E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07134.t1 | MTR_7g108330 | 97.055 | 1630 | 45 | 3 | 1 | 1628 | 37 | 1665 | 0.0 | 3243 |
MS.gene07134.t1 | MTR_7g108330 | 96.894 | 1513 | 44 | 3 | 1 | 1511 | 28 | 1539 | 0.0 | 3013 |
MS.gene07134.t1 | MTR_2g437350 | 56.126 | 253 | 108 | 3 | 1374 | 1626 | 1301 | 1550 | 1.08e-75 | 279 |
MS.gene07134.t1 | MTR_2g437350 | 56.126 | 253 | 108 | 3 | 1374 | 1626 | 1406 | 1655 | 2.40e-75 | 278 |
MS.gene07134.t1 | MTR_2g437350 | 32.589 | 448 | 255 | 13 | 5 | 422 | 6 | 436 | 3.74e-41 | 167 |
MS.gene07134.t1 | MTR_2g437370 | 42.941 | 170 | 75 | 4 | 607 | 769 | 2 | 156 | 2.69e-31 | 123 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07134.t1 | AT3G62900 | 55.287 | 331 | 134 | 5 | 1302 | 1628 | 1083 | 1403 | 8.92e-95 | 338 |
MS.gene07134.t1 | AT3G62900 | 50.391 | 256 | 100 | 9 | 11 | 258 | 11 | 247 | 4.95e-54 | 209 |
MS.gene07134.t1 | AT3G62900 | 55.287 | 331 | 134 | 5 | 1302 | 1628 | 1083 | 1403 | 8.92e-95 | 338 |
MS.gene07134.t1 | AT3G62900 | 50.391 | 256 | 100 | 9 | 11 | 258 | 11 | 247 | 4.95e-54 | 209 |
MS.gene07134.t1 | AT3G62900 | 55.287 | 331 | 134 | 5 | 1302 | 1628 | 1083 | 1403 | 8.92e-95 | 338 |
MS.gene07134.t1 | AT3G62900 | 50.391 | 256 | 100 | 9 | 11 | 258 | 11 | 247 | 4.95e-54 | 209 |
MS.gene07134.t1 | AT1G02990 | 56.357 | 291 | 118 | 4 | 1340 | 1628 | 955 | 1238 | 6.14e-85 | 305 |
MS.gene07134.t1 | AT1G02990 | 33.660 | 306 | 156 | 12 | 62 | 355 | 39 | 309 | 2.47e-22 | 105 |
MS.gene07134.t1 | AT1G02990 | 56.357 | 291 | 118 | 4 | 1340 | 1628 | 995 | 1278 | 7.48e-85 | 306 |
MS.gene07134.t1 | AT1G02990 | 38.420 | 367 | 172 | 13 | 1 | 355 | 25 | 349 | 1.59e-45 | 181 |
MS.gene07134.t1 | AT1G02990 | 56.357 | 291 | 118 | 4 | 1340 | 1628 | 995 | 1278 | 7.48e-85 | 306 |
MS.gene07134.t1 | AT1G02990 | 38.420 | 367 | 172 | 13 | 1 | 355 | 25 | 349 | 1.59e-45 | 181 |
MS.gene07134.t1 | AT1G02990 | 56.357 | 291 | 118 | 4 | 1340 | 1628 | 995 | 1278 | 7.48e-85 | 306 |
MS.gene07134.t1 | AT1G02990 | 38.420 | 367 | 172 | 13 | 1 | 355 | 25 | 349 | 1.59e-45 | 181 |
MS.gene07134.t1 | AT1G02990 | 55.507 | 227 | 93 | 3 | 1340 | 1565 | 995 | 1214 | 6.92e-62 | 233 |
MS.gene07134.t1 | AT1G02990 | 38.420 | 367 | 172 | 13 | 1 | 355 | 25 | 349 | 1.88e-45 | 181 |
MS.gene07134.t1 | AT4G15730 | 46.694 | 242 | 127 | 2 | 1386 | 1627 | 792 | 1031 | 5.49e-54 | 207 |
MS.gene07134.t1 | AT4G15730 | 57.895 | 57 | 24 | 0 | 624 | 680 | 398 | 454 | 1.55e-16 | 86.7 |
MS.gene07134.t1 | AT4G15730 | 46.694 | 242 | 127 | 2 | 1386 | 1627 | 811 | 1050 | 7.34e-54 | 207 |
MS.gene07134.t1 | AT4G15730 | 32.830 | 265 | 143 | 12 | 3 | 258 | 4 | 242 | 5.26e-18 | 91.3 |
MS.gene07134.t1 | AT4G15730 | 57.895 | 57 | 24 | 0 | 624 | 680 | 417 | 473 | 1.46e-16 | 86.7 |
MS.gene07134.t1 | AT1G02990 | 53.390 | 118 | 49 | 1 | 1340 | 1457 | 955 | 1066 | 8.65e-24 | 110 |
MS.gene07134.t1 | AT1G02990 | 33.660 | 306 | 156 | 12 | 62 | 355 | 39 | 309 | 2.56e-22 | 105 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51718 | gene | 36435 | 44521 | 36435 | ID=MS.gene07134 |
51718 | mRNA | 36435 | 44521 | 36435 | ID=MS.gene07134.t1;Parent=MS.gene07134 |
51718 | exon | 44420 | 44521 | 44420 | ID=MS.gene07134.t1.exon1;Parent=MS.gene07134.t1 |
51718 | CDS | 44420 | 44521 | 44420 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 43208 | 43280 | 43208 | ID=MS.gene07134.t1.exon2;Parent=MS.gene07134.t1 |
51718 | CDS | 43208 | 43280 | 43208 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 42981 | 43111 | 42981 | ID=MS.gene07134.t1.exon3;Parent=MS.gene07134.t1 |
51718 | CDS | 42981 | 43111 | 42981 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 42428 | 42826 | 42428 | ID=MS.gene07134.t1.exon4;Parent=MS.gene07134.t1 |
51718 | CDS | 42428 | 42826 | 42428 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 41071 | 42341 | 41071 | ID=MS.gene07134.t1.exon5;Parent=MS.gene07134.t1 |
51718 | CDS | 41071 | 42341 | 41071 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 39991 | 40403 | 39991 | ID=MS.gene07134.t1.exon6;Parent=MS.gene07134.t1 |
51718 | CDS | 39991 | 40403 | 39991 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 38058 | 39877 | 38058 | ID=MS.gene07134.t1.exon7;Parent=MS.gene07134.t1 |
51718 | CDS | 38058 | 39877 | 38058 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 37820 | 37980 | 37820 | ID=MS.gene07134.t1.exon8;Parent=MS.gene07134.t1 |
51718 | CDS | 37820 | 37980 | 37820 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 37450 | 37610 | 37450 | ID=MS.gene07134.t1.exon9;Parent=MS.gene07134.t1 |
51718 | CDS | 37450 | 37610 | 37450 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 36788 | 36948 | 36788 | ID=MS.gene07134.t1.exon10;Parent=MS.gene07134.t1 |
51718 | CDS | 36788 | 36948 | 36788 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
51718 | exon | 36435 | 36629 | 36435 | ID=MS.gene07134.t1.exon11;Parent=MS.gene07134.t1 |
51718 | CDS | 36435 | 36629 | 36435 | ID=cds.MS.gene07134.t1;Parent=MS.gene07134.t1 |
Gene Sequence |
Protein sequence |