Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071588.t1 | XP_003617203.2 | 98 | 294 | 6 | 0 | 1 | 294 | 1 | 294 | 1.60E-151 | 545.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071588.t1 | Q6PDI5 | 25.4 | 299 | 194 | 5 | 22 | 292 | 8 | 305 | 1.2e-17 | 92.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071588.t1 | G7KCU1 | 98.0 | 294 | 6 | 0 | 1 | 294 | 1 | 294 | 1.1e-151 | 545.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060347 | MS.gene071588 | 0.819056 | 1.42E-52 | -1.69E-46 |
MS.gene060349 | MS.gene071588 | 0.813837 | 2.09E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071588.t1 | MTR_5g089000 | 97.959 | 294 | 6 | 0 | 1 | 294 | 1 | 294 | 0.0 | 587 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071588.t1 | AT2G26780 | 69.065 | 278 | 86 | 0 | 17 | 294 | 15 | 292 | 3.66e-120 | 379 |
MS.gene071588.t1 | AT2G26780 | 69.065 | 278 | 86 | 0 | 17 | 294 | 15 | 292 | 4.74e-120 | 378 |
Find 55 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGAAGAAGCTTGGAGAGTA+AGG | 0.282026 | 5.2:-75506798 | None:intergenic |
GCTCAAGTCAATCGTGTTAC+AGG | 0.302814 | 5.2:+75509736 | MS.gene071588:CDS |
TATAAAGGATAAACAAGTTC+AGG | 0.317773 | 5.2:-75510307 | None:intergenic |
GTGAAGCTTCAGTCTGATAT+TGG | 0.328680 | 5.2:+75507898 | MS.gene071588:CDS |
ATACCTTAACAATGATTCTA+AGG | 0.337710 | 5.2:-75508368 | None:intergenic |
TGGACGTTGTATTCGGAATC+TGG | 0.343907 | 5.2:+75507940 | MS.gene071588:CDS |
TGATTAGGTAAAGGAAGATT+TGG | 0.345530 | 5.2:+75508290 | MS.gene071588:intron |
ATAATTTCCTGGTGTTGAAT+AGG | 0.353700 | 5.2:-75508345 | None:intergenic |
ACAGAAGCAGCGACATATAA+AGG | 0.363564 | 5.2:-75510322 | None:intergenic |
AACAACACTGAGAGCGAAAT+CGG | 0.391486 | 5.2:+75506703 | MS.gene071588:CDS |
TGATTCTAAGGATAATTTCC+TGG | 0.392915 | 5.2:-75508356 | None:intergenic |
GAATGCCACTCTGGTCAAAT+TGG | 0.409343 | 5.2:+75509463 | MS.gene071588:CDS |
TATCCTTAGAATCATTGTTA+AGG | 0.414585 | 5.2:+75508365 | MS.gene071588:CDS |
CCCGCTGGTACAACATTGTA+TGG | 0.418876 | 5.2:-75509558 | None:intergenic |
TGAGTTGTGGACGTTGTATT+CGG | 0.440466 | 5.2:+75507933 | MS.gene071588:CDS |
GATTGTGAGAGGAAGAAGCT+TGG | 0.441023 | 5.2:-75506807 | None:intergenic |
ATGTCGCTGCTTCTGTAGAT+TGG | 0.451965 | 5.2:+75510329 | MS.gene071588:CDS |
CTGGTGCTGCTCCGATGATA+AGG | 0.456084 | 5.2:+75507959 | MS.gene071588:CDS |
GAGATGTTCAACAATAGATC+GGG | 0.468946 | 5.2:-75508315 | None:intergenic |
TTCAGAAATCGAAGAAATGC+TGG | 0.468972 | 5.2:+75506727 | MS.gene071588:CDS |
ATCATCTAAGTTAGCACCAC+TGG | 0.476416 | 5.2:-75510526 | None:intergenic |
AGTGAACAATTCTCAAGATA+AGG | 0.485556 | 5.2:+75509513 | MS.gene071588:CDS |
TTTGAATGTTATTCAAGCCA+TGG | 0.492400 | 5.2:+75510276 | MS.gene071588:CDS |
TGAGATGTTCAACAATAGAT+CGG | 0.494495 | 5.2:-75508316 | None:intergenic |
GCTTGGAGAGTAAGGGTTCG+AGG | 0.514854 | 5.2:-75506790 | None:intergenic |
TCCTCGCCTCTCTTTACCAC+AGG | 0.519911 | 5.2:-75510486 | None:intergenic |
TAATGAACTTCTATTAAGAA+AGG | 0.523159 | 5.2:+75509777 | MS.gene071588:CDS |
TAGGTACTGTTGGAGTTTGA+AGG | 0.523867 | 5.2:+75511452 | MS.gene071588:intron |
ATGGTGAATGTAGGTACTGT+TGG | 0.531641 | 5.2:+75511442 | MS.gene071588:intron |
TTGCATTGTCTATATAGAGA+TGG | 0.533042 | 5.2:+75507987 | MS.gene071588:CDS |
ATAAAGGATAAACAAGTTCA+GGG | 0.533327 | 5.2:-75510306 | None:intergenic |
GGAGAGTAAGGGTTCGAGGT+TGG | 0.542538 | 5.2:-75506786 | None:intergenic |
GAGAGAGAAGAGATTGTGAG+AGG | 0.543380 | 5.2:-75506818 | None:intergenic |
TGTAGTGGTGGATTCCCTCA+TGG | 0.549464 | 5.2:+75509703 | MS.gene071588:intron |
AAGTTCAGGGTTAAGCTCCA+TGG | 0.559980 | 5.2:-75510293 | None:intergenic |
GTAATTGGTGAATGCCACTC+TGG | 0.563778 | 5.2:+75509454 | MS.gene071588:CDS |
GTTTGCCTTTGACTGAGTTG+TGG | 0.563801 | 5.2:+75507920 | MS.gene071588:CDS |
AAATCGAAGAAATGCTGGAT+CGG | 0.564876 | 5.2:+75506732 | MS.gene071588:CDS |
CCATACAATGTTGTACCAGC+GGG | 0.566669 | 5.2:+75509558 | MS.gene071588:CDS |
TACCTTGTTACGAACTGCGA+TGG | 0.579606 | 5.2:-75506849 | None:intergenic |
AACGTCCACAACTCAGTCAA+AGG | 0.584348 | 5.2:-75507925 | None:intergenic |
CAGACCTTTGAGAGACCCGC+TGG | 0.592104 | 5.2:-75509573 | None:intergenic |
GATTGACTTGAGCAACAGAA+AGG | 0.596462 | 5.2:-75509726 | None:intergenic |
CTCAAGTCAATCGTGTTACA+GGG | 0.600957 | 5.2:+75509737 | MS.gene071588:CDS |
ATCCATCGCAGTTCGTAACA+AGG | 0.601526 | 5.2:+75506847 | MS.gene071588:CDS |
GGAAGAAGCTTGGAGAGTAA+GGG | 0.602103 | 5.2:-75506797 | None:intergenic |
TGTACCAGCGGGTCTCTCAA+AGG | 0.604369 | 5.2:+75509569 | MS.gene071588:CDS |
GAGCAACAGAAAGGCCATGA+GGG | 0.612352 | 5.2:-75509717 | None:intergenic |
GAAGAGCCTGTGGTAAAGAG+AGG | 0.613686 | 5.2:+75510480 | MS.gene071588:CDS |
TCCATACAATGTTGTACCAG+CGG | 0.625246 | 5.2:+75509557 | MS.gene071588:CDS |
AAAACTTCCTATTCAACACC+AGG | 0.636329 | 5.2:+75508338 | MS.gene071588:CDS |
TAACTCAAGTGAAGAGCCTG+TGG | 0.636627 | 5.2:+75510470 | MS.gene071588:intron |
GCCTGTGGTAAAGAGAGGCG+AGG | 0.668340 | 5.2:+75510485 | MS.gene071588:CDS |
CATCACCAATTTGACCAGAG+TGG | 0.679801 | 5.2:-75509468 | None:intergenic |
TGAGCAACAGAAAGGCCATG+AGG | 0.682726 | 5.2:-75509718 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTTGTTTTTAAAATTG+TGG | + | chr5.2:75507774-75507793 | MS.gene071588:intron | 10.0% |
!!! | ATTTTAAAAACAAAAATTAC+AGG | - | chr5.2:75507772-75507791 | None:intergenic | 10.0% |
!! | AATAAAAAATATATTAGGAG+TGG | - | chr5.2:75511178-75511197 | None:intergenic | 15.0% |
!! | GAAAAAAATAATATGTAGTT+AGG | - | chr5.2:75510810-75510829 | None:intergenic | 15.0% |
!! | GACTGAATAAAAAATATATT+AGG | - | chr5.2:75511183-75511202 | None:intergenic | 15.0% |
!! | TTAGTAAGAAAGAATAAAAA+CGG | - | chr5.2:75510382-75510401 | None:intergenic | 15.0% |
!!! | ATGCGATTTTTTTTTTTTTT+TGG | + | chr5.2:75511236-75511255 | MS.gene071588:intron | 15.0% |
!!! | TCTCTTGATTTTAAATTTTT+GGG | - | chr5.2:75511205-75511224 | None:intergenic | 15.0% |
!!! | TTCTCTTGATTTTAAATTTT+TGG | - | chr5.2:75511206-75511225 | None:intergenic | 15.0% |
!! | AAACTACCATTTGATTAAAT+GGG | - | chr5.2:75509674-75509693 | None:intergenic | 20.0% |
!! | AAGTAGTAATAGAATTAGTT+AGG | - | chr5.2:75508961-75508980 | None:intergenic | 20.0% |
!! | CAAATTTAGTTATGTAACAA+TGG | - | chr5.2:75508410-75508429 | None:intergenic | 20.0% |
!! | CAATTACATAATGAAATTTC+CGG | - | chr5.2:75506901-75506920 | None:intergenic | 20.0% |
!! | TAATGAACTTCTATTAAGAA+AGG | + | chr5.2:75509777-75509796 | MS.gene071588:CDS | 20.0% |
!!! | AACTTTTGTTGAGATATATA+AGG | + | chr5.2:75510598-75510617 | MS.gene071588:intron | 20.0% |
!!! | AATCTTCAATACTTGTTTTT+GGG | - | chr5.2:75508754-75508773 | None:intergenic | 20.0% |
!!! | TAATCTTCAATACTTGTTTT+TGG | - | chr5.2:75508755-75508774 | None:intergenic | 20.0% |
!!! | TAGTATTTTTACATGATTGA+TGG | + | chr5.2:75511423-75511442 | MS.gene071588:intron | 20.0% |
!!! | TGGATTTTTATTATACTGAA+TGG | + | chr5.2:75509600-75509619 | MS.gene071588:intron | 20.0% |
!!! | TGTTATATTTTACTGTTTTG+TGG | + | chr5.2:75508064-75508083 | MS.gene071588:intron | 20.0% |
! | AAAGAGAATGAATCTATCAT+TGG | + | chr5.2:75508792-75508811 | MS.gene071588:intron | 25.0% |
! | AAATGATAAAATCATCGACA+AGG | - | chr5.2:75508536-75508555 | None:intergenic | 25.0% |
! | AATGATAAAATCATCGACAA+GGG | - | chr5.2:75508535-75508554 | None:intergenic | 25.0% |
! | AATTGTGAAGGAAGATATTT+AGG | - | chr5.2:75509905-75509924 | None:intergenic | 25.0% |
! | AATTTCAACAAAGGGAAAAA+GGG | + | chr5.2:75510945-75510964 | MS.gene071588:intron | 25.0% |
! | ACTATACTTGGTAGAAAATT+AGG | + | chr5.2:75506983-75507002 | MS.gene071588:intron | 25.0% |
! | ACTATAGCTTATAGCATATT+AGG | + | chr5.2:75507288-75507307 | MS.gene071588:intron | 25.0% |
! | ACTATAGCTTATTGCATATT+AGG | + | chr5.2:75507370-75507389 | MS.gene071588:intron | 25.0% |
! | ATAAAGGATAAACAAGTTCA+GGG | - | chr5.2:75510309-75510328 | None:intergenic | 25.0% |
! | ATAATTCCTGTTTAAGCATT+TGG | + | chr5.2:75508117-75508136 | MS.gene071588:intron | 25.0% |
! | ATACCTTAACAATGATTCTA+AGG | - | chr5.2:75508371-75508390 | None:intergenic | 25.0% |
! | ATGCAAAAATTCCTTATCAT+CGG | - | chr5.2:75507973-75507992 | None:intergenic | 25.0% |
! | ATGCTTAGTTATTGATCTTT+GGG | + | chr5.2:75509384-75509403 | MS.gene071588:intron | 25.0% |
! | ATTGCACTTAGTGTATAAAA+TGG | - | chr5.2:75510928-75510947 | None:intergenic | 25.0% |
! | ATTTCAAAATAACCAAGAGA+AGG | + | chr5.2:75511145-75511164 | MS.gene071588:intron | 25.0% |
! | CTATAACAAAGCAAAATGTT+TGG | - | chr5.2:75507656-75507675 | None:intergenic | 25.0% |
! | GAAACTACCATTTGATTAAA+TGG | - | chr5.2:75509675-75509694 | None:intergenic | 25.0% |
! | GATAAGAGAAAAAATTGTGA+AGG | - | chr5.2:75509917-75509936 | None:intergenic | 25.0% |
! | GATTCATAATAGGACATTAT+AGG | + | chr5.2:75510038-75510057 | MS.gene071588:intron | 25.0% |
! | TAACTTAGCTATATTAAGCA+AGG | + | chr5.2:75511312-75511331 | MS.gene071588:intron | 25.0% |
! | TAGTAATAGAATTAGTTAGG+TGG | - | chr5.2:75508958-75508977 | None:intergenic | 25.0% |
! | TATAAAGGATAAACAAGTTC+AGG | - | chr5.2:75510310-75510329 | None:intergenic | 25.0% |
! | TATCCTTAGAATCATTGTTA+AGG | + | chr5.2:75508365-75508384 | MS.gene071588:CDS | 25.0% |
! | TCAGCAATTACAATATGAAA+AGG | - | chr5.2:75507591-75507610 | None:intergenic | 25.0% |
! | TGTGTTCTTATATTTCCTAA+TGG | - | chr5.2:75511004-75511023 | None:intergenic | 25.0% |
! | TTAAGAAAGGTAATCAGTAA+TGG | + | chr5.2:75509790-75509809 | MS.gene071588:intron | 25.0% |
! | TTCAGAACTTGATTCATAAT+AGG | + | chr5.2:75510028-75510047 | MS.gene071588:intron | 25.0% |
! | TTCATTCCCATTTAATCAAA+TGG | + | chr5.2:75509665-75509684 | MS.gene071588:intron | 25.0% |
! | TTGAAACTCTTACTATATCT+AGG | + | chr5.2:75511377-75511396 | MS.gene071588:intron | 25.0% |
! | TTGCACTTAGTGTATAAAAT+GGG | - | chr5.2:75510927-75510946 | None:intergenic | 25.0% |
! | TTTAAGCATTTGGCTAATAA+AGG | + | chr5.2:75508127-75508146 | MS.gene071588:intron | 25.0% |
! | TTTACCTAATCAAATTGCAA+GGG | - | chr5.2:75508282-75508301 | None:intergenic | 25.0% |
! | TTTCAAAATGTCAATCGAAA+AGG | - | chr5.2:75511363-75511382 | None:intergenic | 25.0% |
!! | AAAGAAGTATGAACTGAAAA+AGG | + | chr5.2:75508817-75508836 | MS.gene071588:intron | 25.0% |
!! | ACTATAGTTTGTAGCATATT+AGG | + | chr5.2:75507205-75507224 | MS.gene071588:intron | 25.0% |
!!! | AAGGTAATTGCTTTTGTTTA+TGG | + | chr5.2:75511116-75511135 | MS.gene071588:intron | 25.0% |
!!! | AGACTGTTTTTGCTATTTAA+TGG | + | chr5.2:75510564-75510583 | MS.gene071588:CDS | 25.0% |
!!! | CAATTTTTTCTCTTATCAGA+AGG | + | chr5.2:75509920-75509939 | MS.gene071588:intron | 25.0% |
!!! | CATAGTAGCTTTTTTTGTAA+AGG | - | chr5.2:75510207-75510226 | None:intergenic | 25.0% |
!!! | CATTTGTTATGTCACAAATT+TGG | + | chr5.2:75509638-75509657 | MS.gene071588:intron | 25.0% |
!!! | TGTTATCAAGTTGATTAGTA+TGG | + | chr5.2:75506919-75506938 | MS.gene071588:intron | 25.0% |
!!! | TTTTGTTTGATAAGGAGAAA+AGG | + | chr5.2:75511086-75511105 | MS.gene071588:intron | 25.0% |
!!! | TTTTTTTGTAAAGGCACAAT+AGG | - | chr5.2:75510198-75510217 | None:intergenic | 25.0% |
AAATGAACAGAATATCCCTA+TGG | - | chr5.2:75509976-75509995 | None:intergenic | 30.0% | |
AACCTTACATGGTAAGATAA+TGG | - | chr5.2:75509821-75509840 | None:intergenic | 30.0% | |
AAGAGCAAGGAATAGATTAA+AGG | - | chr5.2:75509018-75509037 | None:intergenic | 30.0% | |
AATACATTCTGTTTAGCACT+TGG | - | chr5.2:75508902-75508921 | None:intergenic | 30.0% | |
AATTAATGAGACTGCTTTCA+TGG | - | chr5.2:75511056-75511075 | None:intergenic | 30.0% | |
ACTAAGTGCAATTTCAACAA+AGG | + | chr5.2:75510936-75510955 | MS.gene071588:intron | 30.0% | |
ACTGAAATCTTACTGTAACT+AGG | - | chr5.2:75507248-75507267 | None:intergenic | 30.0% | |
AGAGCAAGGAATAGATTAAA+GGG | - | chr5.2:75509017-75509036 | None:intergenic | 30.0% | |
AGTGAACAATTCTCAAGATA+AGG | + | chr5.2:75509513-75509532 | MS.gene071588:CDS | 30.0% | |
ATACATTCTGTTTAGCACTT+GGG | - | chr5.2:75508901-75508920 | None:intergenic | 30.0% | |
ATTCTTGCAAACATGTATCA+GGG | - | chr5.2:75509363-75509382 | None:intergenic | 30.0% | |
ATTTACTGCTATCTTCTTCT+AGG | + | chr5.2:75511260-75511279 | MS.gene071588:intron | 30.0% | |
CAATTTCAACAAAGGGAAAA+AGG | + | chr5.2:75510944-75510963 | MS.gene071588:intron | 30.0% | |
CATGCTTAGTTATTGATCTT+TGG | + | chr5.2:75509383-75509402 | MS.gene071588:intron | 30.0% | |
CTAAGTGCAATTTCAACAAA+GGG | + | chr5.2:75510937-75510956 | MS.gene071588:intron | 30.0% | |
CTACAGCTTATAGAATACTT+AGG | + | chr5.2:75507626-75507645 | MS.gene071588:intron | 30.0% | |
CTTGCAATTTGATTAGGTAA+AGG | + | chr5.2:75508281-75508300 | MS.gene071588:intron | 30.0% | |
CTTTACCTAATCAAATTGCA+AGG | - | chr5.2:75508283-75508302 | None:intergenic | 30.0% | |
GATTTCAATTGCTGAATGAA+CGG | + | chr5.2:75507341-75507360 | MS.gene071588:intron | 30.0% | |
GCAATTACAATATGAAAAGG+AGG | - | chr5.2:75507588-75507607 | None:intergenic | 30.0% | |
GCATGTATCTGTTATGTATA+TGG | - | chr5.2:75508692-75508711 | None:intergenic | 30.0% | |
GGAAATATAAGAACACACTT+AGG | + | chr5.2:75511007-75511026 | MS.gene071588:intron | 30.0% | |
GGTGAAAGTTTAATGGTTTA+GGG | + | chr5.2:75507823-75507842 | MS.gene071588:intron | 30.0% | |
TACCATTATCTTACCATGTA+AGG | + | chr5.2:75509816-75509835 | MS.gene071588:intron | 30.0% | |
TATTAGCCAAATGCTTAAAC+AGG | - | chr5.2:75508126-75508145 | None:intergenic | 30.0% | |
TCAGTATATTCACATTTGGA+TGG | + | chr5.2:75510160-75510179 | MS.gene071588:intron | 30.0% | |
TCGCTATTGAATACTTATCA+TGG | + | chr5.2:75508234-75508253 | MS.gene071588:intron | 30.0% | |
TCTCCTTATCAAACAAAAAC+AGG | - | chr5.2:75511084-75511103 | None:intergenic | 30.0% | |
TCTTGTAATTGCTGAATTGA+CGG | + | chr5.2:75506954-75506973 | MS.gene071588:intron | 30.0% | |
TGAGATGTTCAACAATAGAT+CGG | - | chr5.2:75508319-75508338 | None:intergenic | 30.0% | |
TGATTAGGTAAAGGAAGATT+TGG | + | chr5.2:75508290-75508309 | MS.gene071588:intron | 30.0% | |
TGCACTTAGTGTATAAAATG+GGG | - | chr5.2:75510926-75510945 | None:intergenic | 30.0% | |
TGGTGAAAGTTTAATGGTTT+AGG | + | chr5.2:75507822-75507841 | MS.gene071588:intron | 30.0% | |
TGTTGTTGATGTTATTACCA+TGG | + | chr5.2:75509852-75509871 | MS.gene071588:intron | 30.0% | |
TTGATGTTATTACCATGGTT+AGG | + | chr5.2:75509857-75509876 | MS.gene071588:intron | 30.0% | |
TTGCATTGTCTATATAGAGA+TGG | + | chr5.2:75507987-75508006 | MS.gene071588:CDS | 30.0% | |
TTTGAATGTTATTCAAGCCA+TGG | + | chr5.2:75510276-75510295 | MS.gene071588:CDS | 30.0% | |
! | AGTTTGACTGTTTTGCAAAT+TGG | + | chr5.2:75508465-75508484 | MS.gene071588:intron | 30.0% |
! | ATAATTTCCTGGTGTTGAAT+AGG | - | chr5.2:75508348-75508367 | None:intergenic | 30.0% |
! | CAATCGATTCATTCATCAAT+TGG | - | chr5.2:75507183-75507202 | None:intergenic | 30.0% |
! | GTGTGCAAAATTTTACTCAA+AGG | - | chr5.2:75510846-75510865 | None:intergenic | 30.0% |
! | TACTTTAGAAGCATGTTGAT+AGG | - | chr5.2:75509100-75509119 | None:intergenic | 30.0% |
! | TATGGTCATGCTTTTATGAT+AGG | - | chr5.2:75508674-75508693 | None:intergenic | 30.0% |
! | TGATTCTAAGGATAATTTCC+TGG | - | chr5.2:75508359-75508378 | None:intergenic | 30.0% |
! | TTTTCAACGTGTTAATGCAA+AGG | + | chr5.2:75508011-75508030 | MS.gene071588:CDS | 30.0% |
!! | ATGAATTGCTGCTTGTTTTT+AGG | + | chr5.2:75509432-75509451 | MS.gene071588:intron | 30.0% |
!! | GATTTCAGTTGATGAATGAA+CGG | + | chr5.2:75507259-75507278 | MS.gene071588:intron | 30.0% |
!! | GCATTAGTTGCACTTTATTT+TGG | + | chr5.2:75509225-75509244 | MS.gene071588:intron | 30.0% |
!! | GTTTTGTTGTAAACTAAGCA+GGG | + | chr5.2:75508579-75508598 | MS.gene071588:intron | 30.0% |
!! | TAGTTTCTGTTTTGTTGTAG+TGG | + | chr5.2:75509688-75509707 | MS.gene071588:intron | 30.0% |
!!! | AAATTGTGGTTTTCAAGTGA+TGG | + | chr5.2:75507788-75507807 | MS.gene071588:intron | 30.0% |
!!! | AGTCCTGTTTTTGTTTGATA+AGG | + | chr5.2:75511078-75511097 | MS.gene071588:intron | 30.0% |
AAAACTTCCTATTCAACACC+AGG | + | chr5.2:75508338-75508357 | MS.gene071588:CDS | 35.0% | |
AAATCGAAGAAATGCTGGAT+CGG | + | chr5.2:75506732-75506751 | MS.gene071588:CDS | 35.0% | |
AATACTTATCATGGAGCTTG+TGG | + | chr5.2:75508243-75508262 | MS.gene071588:intron | 35.0% | |
AATGCCCTTGCAATTTGATT+AGG | + | chr5.2:75508275-75508294 | MS.gene071588:intron | 35.0% | |
AATTATGACAAGCAGCATTC+TGG | - | chr5.2:75509306-75509325 | None:intergenic | 35.0% | |
ACAAGCAGCAATTCATTAGA+AGG | - | chr5.2:75509428-75509447 | None:intergenic | 35.0% | |
AGAAAAGGAGGAATGTTTCA+AGG | + | chr5.2:75509259-75509278 | MS.gene071588:intron | 35.0% | |
AGAGCAAGGGAATAGATTAA+AGG | - | chr5.2:75508927-75508946 | None:intergenic | 35.0% | |
ATAGCTAAGTTAGCTAGCAA+AGG | - | chr5.2:75511304-75511323 | None:intergenic | 35.0% | |
CCAAATGTGAATATACTGAC+AGG | - | chr5.2:75510159-75510178 | None:intergenic | 35.0% | |
CCTGTCAGTATATTCACATT+TGG | + | chr5.2:75510156-75510175 | MS.gene071588:intron | 35.0% | |
CTTTCTGAGTTCTATCTTTG+TGG | + | chr5.2:75510407-75510426 | MS.gene071588:intron | 35.0% | |
GAAAAGGAGGAATGTTTCAA+GGG | + | chr5.2:75509260-75509279 | MS.gene071588:intron | 35.0% | |
GAGATGTTCAACAATAGATC+GGG | - | chr5.2:75508318-75508337 | None:intergenic | 35.0% | |
GAGCAAGGGAATAGATTAAA+GGG | - | chr5.2:75508926-75508945 | None:intergenic | 35.0% | |
GAGTCTGCTTAGTTTAAATC+AGG | + | chr5.2:75510779-75510798 | MS.gene071588:intron | 35.0% | |
GATTCTTGCAAACATGTATC+AGG | - | chr5.2:75509364-75509383 | None:intergenic | 35.0% | |
GATTTCAGTTGCTGAATGAA+TGG | + | chr5.2:75507422-75507441 | MS.gene071588:intron | 35.0% | |
GCACTTAGTGTATAAAATGG+GGG | - | chr5.2:75510925-75510944 | None:intergenic | 35.0% | |
GGGAATTGTGTGTTTATGAT+AGG | + | chr5.2:75507843-75507862 | MS.gene071588:intron | 35.0% | |
GTAACAATGGAGATTCAGAA+AGG | - | chr5.2:75508397-75508416 | None:intergenic | 35.0% | |
GTATGAACTGAAAAAGGAGA+CGG | + | chr5.2:75508823-75508842 | MS.gene071588:intron | 35.0% | |
GTTTGATAAGGAGAAAAGGT+GGG | + | chr5.2:75511090-75511109 | MS.gene071588:intron | 35.0% | |
TACACTATCTGAACCTTACA+TGG | - | chr5.2:75509832-75509851 | None:intergenic | 35.0% | |
TCTGTTAAGCATCAAAGAGA+AGG | - | chr5.2:75508615-75508634 | None:intergenic | 35.0% | |
TGTTTGATAAGGAGAAAAGG+TGG | + | chr5.2:75511089-75511108 | MS.gene071588:intron | 35.0% | |
TTCAGAAATCGAAGAAATGC+TGG | + | chr5.2:75506727-75506746 | MS.gene071588:CDS | 35.0% | |
TTGTTTACGTGCTTGTTCTT+AGG | + | chr5.2:75507716-75507735 | MS.gene071588:intron | 35.0% | |
! | CAACAAAATCCTTTTCCACT+AGG | - | chr5.2:75510090-75510109 | None:intergenic | 35.0% |
! | GTGTTTATGAGCTTGTTCAT+CGG | + | chr5.2:75507073-75507092 | MS.gene071588:intron | 35.0% |
! | TGTTTTGCAAATTGGACTTG+AGG | + | chr5.2:75508473-75508492 | MS.gene071588:intron | 35.0% |
!! | ACAAAGTGTGGTATTGACTT+TGG | + | chr5.2:75508496-75508515 | MS.gene071588:intron | 35.0% |
!! | ACACGTTCTGTATTTTGAAC+TGG | + | chr5.2:75510862-75510881 | MS.gene071588:intron | 35.0% |
!! | ACATGATTGATGGTGAATGT+AGG | + | chr5.2:75511433-75511452 | MS.gene071588:intron | 35.0% |
!! | CACGTTCTGTATTTTGAACT+GGG | + | chr5.2:75510863-75510882 | MS.gene071588:intron | 35.0% |
!! | CATGCTTCTAAAGTAAATGC+CGG | + | chr5.2:75509105-75509124 | MS.gene071588:intron | 35.0% |
!! | CGTTTTGTTGTAAACTAAGC+AGG | + | chr5.2:75508578-75508597 | MS.gene071588:intron | 35.0% |
!! | GTGGTTTGGTGAAAGTTTAA+TGG | + | chr5.2:75507816-75507835 | MS.gene071588:intron | 35.0% |
!! | TAGCTTTGTCTACGTAGAAA+GGG | - | chr5.2:75508868-75508887 | None:intergenic | 35.0% |
!! | TGACGGATTGAAACTATACT+TGG | + | chr5.2:75506971-75506990 | MS.gene071588:intron | 35.0% |
!! | TTAGCTTTGTCTACGTAGAA+AGG | - | chr5.2:75508869-75508888 | None:intergenic | 35.0% |
!! | TTTCTGTTTTGTTGTAGTGG+TGG | + | chr5.2:75509691-75509710 | MS.gene071588:intron | 35.0% |
!!! | AGTTGCACTTTATTTTGGCT+GGG | + | chr5.2:75509230-75509249 | MS.gene071588:intron | 35.0% |
!!! | GCTGCTTGTTTTTAGGTAAT+TGG | + | chr5.2:75509439-75509458 | MS.gene071588:intron | 35.0% |
!!! | TAGTTGCACTTTATTTTGGC+TGG | + | chr5.2:75509229-75509248 | MS.gene071588:intron | 35.0% |
!!! | TTTTCAAGTGATGGAGAAAG+TGG | + | chr5.2:75507797-75507816 | MS.gene071588:intron | 35.0% |
AACAACACTGAGAGCGAAAT+CGG | + | chr5.2:75506703-75506722 | MS.gene071588:CDS | 40.0% | |
AAGACTCTACACTAGGTTCA+GGG | - | chr5.2:75509335-75509354 | None:intergenic | 40.0% | |
AAGCAGCATTCTGGTGTAAA+TGG | - | chr5.2:75509297-75509316 | None:intergenic | 40.0% | |
AAGGAGAAAAGGTGGGTATA+AGG | + | chr5.2:75511097-75511116 | MS.gene071588:intron | 40.0% | |
ACAGAAGCAGCGACATATAA+AGG | - | chr5.2:75510325-75510344 | None:intergenic | 40.0% | |
AGCAGCATTCTGGTGTAAAT+GGG | - | chr5.2:75509296-75509315 | None:intergenic | 40.0% | |
AGGTGGTTATAGTAAGAGCA+AGG | - | chr5.2:75508941-75508960 | None:intergenic | 40.0% | |
AGTTCGGAGAACTTGAGTAT+TGG | + | chr5.2:75509203-75509222 | MS.gene071588:intron | 40.0% | |
ATCATCTAAGTTAGCACCAC+TGG | - | chr5.2:75510529-75510548 | None:intergenic | 40.0% | |
ATTACCATGGTTAGGAGAAC+TGG | + | chr5.2:75509865-75509884 | MS.gene071588:intron | 40.0% | |
CTCAAGTCAATCGTGTTACA+GGG | + | chr5.2:75509737-75509756 | MS.gene071588:CDS | 40.0% | |
GATAAAATCATCGACAAGGG+AGG | - | chr5.2:75508532-75508551 | None:intergenic | 40.0% | |
GGCAAATAAGACTCTACACT+AGG | - | chr5.2:75509342-75509361 | None:intergenic | 40.0% | |
GGCAGCAAGTAATAAAGCAT+TGG | - | chr5.2:75510904-75510923 | None:intergenic | 40.0% | |
GGTGGTTATAGTAAGAGCAA+GGG | - | chr5.2:75508940-75508959 | None:intergenic | 40.0% | |
GTGAAGCTTCAGTCTGATAT+TGG | + | chr5.2:75507898-75507917 | MS.gene071588:CDS | 40.0% | |
GTGTTGGGAGATAACAAACT+GGG | - | chr5.2:75509164-75509183 | None:intergenic | 40.0% | |
TAAGACTCTACACTAGGTTC+AGG | - | chr5.2:75509336-75509355 | None:intergenic | 40.0% | |
TCCATACAATGTTGTACCAG+CGG | + | chr5.2:75509557-75509576 | MS.gene071588:CDS | 40.0% | |
TCCGGCAACGAATTGAAATT+CGG | - | chr5.2:75506883-75506902 | None:intergenic | 40.0% | |
TGAGTTGTGGACGTTGTATT+CGG | + | chr5.2:75507933-75507952 | MS.gene071588:CDS | 40.0% | |
TGGTAAATGCTAAGACCAAG+TGG | - | chr5.2:75511036-75511055 | None:intergenic | 40.0% | |
TGTGTTGGGAGATAACAAAC+TGG | - | chr5.2:75509165-75509184 | None:intergenic | 40.0% | |
! | AAGTGATGGAGAAAGTGGTT+TGG | + | chr5.2:75507802-75507821 | MS.gene071588:intron | 40.0% |
! | AGCTTTGTCTACGTAGAAAG+GGG | - | chr5.2:75508867-75508886 | None:intergenic | 40.0% |
! | ATGGTGAATGTAGGTACTGT+TGG | + | chr5.2:75511442-75511461 | MS.gene071588:intron | 40.0% |
! | GCTAGCAAAGGTGTATATAC+AGG | - | chr5.2:75511292-75511311 | None:intergenic | 40.0% |
!! | CGAGGAGCTTTTAAAGAAGA+AGG | + | chr5.2:75510503-75510522 | MS.gene071588:CDS | 40.0% |
!! | CTTTTAAAGAAGAAGGCCAG+TGG | + | chr5.2:75510510-75510529 | MS.gene071588:CDS | 40.0% |
!! | GATTGACTTGAGCAACAGAA+AGG | - | chr5.2:75509729-75509748 | None:intergenic | 40.0% |
AACACACTTAGGCATCCACT+TGG | + | chr5.2:75511018-75511037 | MS.gene071588:intron | 45.0% | |
AACGTCCACAACTCAGTCAA+AGG | - | chr5.2:75507928-75507947 | None:intergenic | 45.0% | |
AAGTTCAGGGTTAAGCTCCA+TGG | - | chr5.2:75510296-75510315 | None:intergenic | 45.0% | |
AATCATCGACAAGGGAGGAA+TGG | - | chr5.2:75508527-75508546 | None:intergenic | 45.0% | |
ACACACACACATGAGAAGCT+TGG | + | chr5.2:75509180-75509199 | MS.gene071588:intron | 45.0% | |
ACGTAGAAAGGGGAAACACT+TGG | - | chr5.2:75508857-75508876 | None:intergenic | 45.0% | |
AGAAAGGGGAAACACTTGGA+AGG | - | chr5.2:75508853-75508872 | None:intergenic | 45.0% | |
AGCTGACTACCTAGTGGAAA+AGG | + | chr5.2:75510078-75510097 | MS.gene071588:intron | 45.0% | |
AGCTTCTCATGTGTGTGTGT+TGG | - | chr5.2:75509180-75509199 | None:intergenic | 45.0% | |
AGGAAGAAGCTTGGAGAGTA+AGG | - | chr5.2:75506801-75506820 | None:intergenic | 45.0% | |
ATCCATCGCAGTTCGTAACA+AGG | + | chr5.2:75506847-75506866 | MS.gene071588:CDS | 45.0% | |
ATCGTCCTTGTGTTGTCATG+AGG | + | chr5.2:75510975-75510994 | MS.gene071588:intron | 45.0% | |
ATGTCGCTGCTTCTGTAGAT+TGG | + | chr5.2:75510329-75510348 | MS.gene071588:CDS | 45.0% | |
CACATGAGAAGCTTGGAGTT+CGG | + | chr5.2:75509187-75509206 | MS.gene071588:intron | 45.0% | |
CATCACCAATTTGACCAGAG+TGG | - | chr5.2:75509471-75509490 | None:intergenic | 45.0% | |
CCATACAATGTTGTACCAGC+GGG | + | chr5.2:75509558-75509577 | MS.gene071588:CDS | 45.0% | |
GAATGCCACTCTGGTCAAAT+TGG | + | chr5.2:75509463-75509482 | MS.gene071588:CDS | 45.0% | |
GAGAGAGAAGAGATTGTGAG+AGG | - | chr5.2:75506821-75506840 | None:intergenic | 45.0% | |
GATTGTGAGAGGAAGAAGCT+TGG | - | chr5.2:75506810-75506829 | None:intergenic | 45.0% | |
GCCGAATTTCAATTCGTTGC+CGG | + | chr5.2:75506879-75506898 | MS.gene071588:intron | 45.0% | |
GCTCAAGTCAATCGTGTTAC+AGG | + | chr5.2:75509736-75509755 | MS.gene071588:CDS | 45.0% | |
GCTTCTCATGTGTGTGTGTT+GGG | - | chr5.2:75509179-75509198 | None:intergenic | 45.0% | |
GGAAGAAGCTTGGAGAGTAA+GGG | - | chr5.2:75506800-75506819 | None:intergenic | 45.0% | |
GGCAACGAATTGAAATTCGG+CGG | - | chr5.2:75506880-75506899 | None:intergenic | 45.0% | |
GTAATTGGTGAATGCCACTC+TGG | + | chr5.2:75509454-75509473 | MS.gene071588:CDS | 45.0% | |
GTTACCAGTTCTCCTAACCA+TGG | - | chr5.2:75509872-75509891 | None:intergenic | 45.0% | |
GTTTGCCTTTGACTGAGTTG+TGG | + | chr5.2:75507920-75507939 | MS.gene071588:CDS | 45.0% | |
TAACTCAAGTGAAGAGCCTG+TGG | + | chr5.2:75510470-75510489 | MS.gene071588:intron | 45.0% | |
TACCTTGTTACGAACTGCGA+TGG | - | chr5.2:75506852-75506871 | None:intergenic | 45.0% | |
TCGTCCTTGTGTTGTCATGA+GGG | + | chr5.2:75510976-75510995 | MS.gene071588:intron | 45.0% | |
TGGACGTTGTATTCGGAATC+TGG | + | chr5.2:75507940-75507959 | MS.gene071588:CDS | 45.0% | |
TTGGACTTGAGGACAAAGTG+TGG | + | chr5.2:75508484-75508503 | MS.gene071588:intron | 45.0% | |
! | ATTTTGAACTGGGCCCTCTT+GGG | + | chr5.2:75510873-75510892 | MS.gene071588:intron | 45.0% |
! | CCTTTTCTGTGAGTGCAGTT+GGG | + | chr5.2:75510250-75510269 | MS.gene071588:intron | 45.0% |
! | GTCTCTCAAAGGTCTGGAAT+TGG | + | chr5.2:75509580-75509599 | MS.gene071588:intron | 45.0% |
! | TCCTTTTCTGTGAGTGCAGT+TGG | + | chr5.2:75510249-75510268 | MS.gene071588:intron | 45.0% |
!! | TATTTTGAACTGGGCCCTCT+TGG | + | chr5.2:75510872-75510891 | MS.gene071588:intron | 45.0% |
AGTGGTTGAGTGCCTTCTCT+TGG | - | chr5.2:75511160-75511179 | None:intergenic | 50.0% | |
CCCAACTGCACTCACAGAAA+AGG | - | chr5.2:75510253-75510272 | None:intergenic | 50.0% | |
CCCGCTGGTACAACATTGTA+TGG | - | chr5.2:75509561-75509580 | None:intergenic | 50.0% | |
CGTCCTTGTGTTGTCATGAG+GGG | + | chr5.2:75510977-75510996 | MS.gene071588:intron | 50.0% | |
GAAGAGCCTGTGGTAAAGAG+AGG | + | chr5.2:75510480-75510499 | MS.gene071588:CDS | 50.0% | |
GAGAGTTTCTCGTCGCCATA+GGG | + | chr5.2:75509958-75509977 | MS.gene071588:intron | 50.0% | |
GAGCAACAGAAAGGCCATGA+GGG | - | chr5.2:75509720-75509739 | None:intergenic | 50.0% | |
GTCCTTGTGTTGTCATGAGG+GGG | + | chr5.2:75510978-75510997 | MS.gene071588:intron | 50.0% | |
TCACGTAGCTGACTACCTAG+TGG | + | chr5.2:75510072-75510091 | MS.gene071588:intron | 50.0% | |
TCGACAAGGGAGGAATGGAA+TGG | - | chr5.2:75508522-75508541 | None:intergenic | 50.0% | |
TGAGAGTTTCTCGTCGCCAT+AGG | + | chr5.2:75509957-75509976 | MS.gene071588:intron | 50.0% | |
TGAGCAACAGAAAGGCCATG+AGG | - | chr5.2:75509721-75509740 | None:intergenic | 50.0% | |
TTGGCTGGGCTTGTGAGAAA+AGG | + | chr5.2:75509244-75509263 | MS.gene071588:intron | 50.0% | |
! | GCAAGCAATTTTGCGTGTGC+CGG | - | chr5.2:75509127-75509146 | None:intergenic | 50.0% |
! | TTTTGAACTGGGCCCTCTTG+GGG | + | chr5.2:75510874-75510893 | MS.gene071588:intron | 50.0% |
!! | TGTAGTGGTGGATTCCCTCA+TGG | + | chr5.2:75509703-75509722 | MS.gene071588:intron | 50.0% |
GCTGGGCTTGTGAGAAAAGG+AGG | + | chr5.2:75509247-75509266 | MS.gene071588:intron | 55.0% | |
GCTTGGAGAGTAAGGGTTCG+AGG | - | chr5.2:75506793-75506812 | None:intergenic | 55.0% | |
GGAGAGTAAGGGTTCGAGGT+TGG | - | chr5.2:75506789-75506808 | None:intergenic | 55.0% | |
GTTGTCATGAGGGGGCCATT+AGG | + | chr5.2:75510986-75511005 | MS.gene071588:intron | 55.0% | |
TATGTGTGTGCGCACTCGCT+CGG | - | chr5.2:75508203-75508222 | None:intergenic | 55.0% | |
TCCTCGCCTCTCTTTACCAC+AGG | - | chr5.2:75510489-75510508 | None:intergenic | 55.0% | |
TGTACCAGCGGGTCTCTCAA+AGG | + | chr5.2:75509569-75509588 | MS.gene071588:CDS | 55.0% | |
TTTGAACTGGGCCCTCTTGG+GGG | + | chr5.2:75510875-75510894 | MS.gene071588:intron | 55.0% | |
! | AGCATTGGAGACCCCCAAGA+GGG | - | chr5.2:75510889-75510908 | None:intergenic | 55.0% |
!! | AAGCATTGGAGACCCCCAAG+AGG | - | chr5.2:75510890-75510909 | None:intergenic | 55.0% |
!! | CTGGTGCTGCTCCGATGATA+AGG | + | chr5.2:75507959-75507978 | MS.gene071588:CDS | 55.0% |
CAGCGGGTCTCTCAAAGGTC+TGG | + | chr5.2:75509574-75509593 | MS.gene071588:intron | 60.0% | |
GCCTGTGGTAAAGAGAGGCG+AGG | + | chr5.2:75510485-75510504 | MS.gene071588:CDS | 60.0% | |
GGCCCCCTCATGACAACACA+AGG | - | chr5.2:75510983-75511002 | None:intergenic | 60.0% | |
! | CAGACCTTTGAGAGACCCGC+TGG | - | chr5.2:75509576-75509595 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 75506677 | 75511471 | 75506677 | ID=MS.gene071588 |
chr5.2 | mRNA | 75506677 | 75511471 | 75506677 | ID=MS.gene071588.t1;Parent=MS.gene071588 |
chr5.2 | exon | 75506677 | 75506868 | 75506677 | ID=MS.gene071588.t1.exon1;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75506677 | 75506868 | 75506677 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
chr5.2 | exon | 75507865 | 75508032 | 75507865 | ID=MS.gene071588.t1.exon2;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75507865 | 75508032 | 75507865 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
chr5.2 | exon | 75508297 | 75508386 | 75508297 | ID=MS.gene071588.t1.exon3;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75508297 | 75508386 | 75508297 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
chr5.2 | exon | 75509454 | 75509590 | 75509454 | ID=MS.gene071588.t1.exon4;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75509454 | 75509590 | 75509454 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
chr5.2 | exon | 75509708 | 75509798 | 75509708 | ID=MS.gene071588.t1.exon5;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75509708 | 75509798 | 75509708 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
chr5.2 | exon | 75510268 | 75510350 | 75510268 | ID=MS.gene071588.t1.exon6;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75510268 | 75510350 | 75510268 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
chr5.2 | exon | 75510479 | 75510585 | 75510479 | ID=MS.gene071588.t1.exon7;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75510479 | 75510585 | 75510479 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
chr5.2 | exon | 75511455 | 75511471 | 75511455 | ID=MS.gene071588.t1.exon8;Parent=MS.gene071588.t1 |
chr5.2 | CDS | 75511455 | 75511471 | 75511455 | ID=cds.MS.gene071588.t1;Parent=MS.gene071588.t1 |
Gene Sequence |
Protein sequence |