AlfalfaGEDB | MS.gene071694

M. sativa cultivar XinJiangDaYe / MS.gene071694

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016021 GO:0016740 GO:0016746 GO:0019538 GO:0019637 GO:0031224 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0090407 GO:0110165 GO:1901135 GO:1901137 GO:1901564 GO:1901576 GO:1903509
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071694.t1	XP_024629590.1	81.2	441	29	5	1	432	20	415	6.30E-181	643.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071694.t1	B3H6K1	50.3	384	150	7	58	432	33	384	4.0e-91	336.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071694.t1	A0A396GMP9	81.2	441	29	5	1	432	20	415	4.5e-181	643.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053998	MS.gene071694	0.811	8.71E-51	-1.69E-46
MS.gene058010	MS.gene071694	0.803343	3.65E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 81 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCCAGAATATTGTGG+AGG	0.674098	8.4:+45185188	None:intergenic
AAATCAGATGATGAACCTCC+AGG	0.534740	8.4:+45187937	None:intergenic
AACATTCCTCCACAATATTC+TGG	0.212408	8.4:-45185194	MS.gene071694:CDS
AACTGGTGTGGATTATCAGG+TGG	0.588654	8.4:-45186401	MS.gene071694:CDS
AATATATGCCCTAATAGAAT+TGG	0.292716	8.4:+45187906	None:intergenic
AATCTATAGTCAATGTTGCT+AGG	0.519749	8.4:+45188379	None:intergenic
ACACCATAGTAACATATGGC+AGG	0.607655	8.4:+45184477	None:intergenic
ACACTGGCTGATCTTATTCC+TGG	0.353610	8.4:-45183647	MS.gene071694:CDS
ACACTTAACTGCAGGCCTGG+AGG	0.671758	8.4:-45187952	MS.gene071694:intron
ACATTCCTCCACAATATTCT+GGG	0.424084	8.4:-45185193	MS.gene071694:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATGCATTTCTACATCT+AGG	+	chr8.4:45186020-45186039	None:intergenic	30.0%
AAGTTCGAACCAAGAAATTT+GGG	+	chr8.4:45185330-45185349	None:intergenic	30.0%
AATCTATAGTCAATGTTGCT+AGG	+	chr8.4:45184388-45184407	None:intergenic	30.0%
AGATATTTGTGGAGATAAAG+TGG	-	chr8.4:45188687-45188706	MS.gene071694:intron	30.0%
ATAGGAAACTATCTTCTCTT+TGG	-	chr8.4:45187953-45187972	MS.gene071694:intron	30.0%
ATATTCCATGAGAAATTACC+TGG	+	chr8.4:45185227-45185246	None:intergenic	30.0%
ATCATAAGTCAAAACAAGGA+GGG	-	chr8.4:45187762-45187781	MS.gene071694:CDS	30.0%
ATGAATGCATAGGTTAAAAG+AGG	+	chr8.4:45185525-45185544	None:intergenic	30.0%
ATTCTCATTGTAATTCTGCT+TGG	-	chr8.4:45184149-45184168	MS.gene071694:intron	30.0%
ATTTCTTATATCGTTGTTGC+TGG	-	chr8.4:45188783-45188802	MS.gene071694:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	45183586	45189200	45183586	ID=MS.gene071694
chr8.4	mRNA	45183586	45189200	45183586	ID=MS.gene071694.t1;Parent=MS.gene071694
chr8.4	exon	45189137	45189200	45189137	ID=MS.gene071694.t1.exon1;Parent=MS.gene071694.t1
chr8.4	CDS	45189137	45189200	45189137	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45189003	45189053	45189003	ID=MS.gene071694.t1.exon2;Parent=MS.gene071694.t1
chr8.4	CDS	45189003	45189053	45189003	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45188368	45188508	45188368	ID=MS.gene071694.t1.exon3;Parent=MS.gene071694.t1
chr8.4	CDS	45188368	45188508	45188368	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45188077	45188150	45188077	ID=MS.gene071694.t1.exon4;Parent=MS.gene071694.t1
chr8.4	CDS	45188077	45188150	45188077	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45187878	45187960	45187878	ID=MS.gene071694.t1.exon5;Parent=MS.gene071694.t1
chr8.4	CDS	45187878	45187960	45187878	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45187714	45187814	45187714	ID=MS.gene071694.t1.exon6;Parent=MS.gene071694.t1
chr8.4	CDS	45187714	45187814	45187714	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45186846	45186919	45186846	ID=MS.gene071694.t1.exon7;Parent=MS.gene071694.t1
chr8.4	CDS	45186846	45186919	45186846	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45186367	45186493	45186367	ID=MS.gene071694.t1.exon8;Parent=MS.gene071694.t1
chr8.4	CDS	45186367	45186493	45186367	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45185168	45185294	45185168	ID=MS.gene071694.t1.exon9;Parent=MS.gene071694.t1
chr8.4	CDS	45185168	45185294	45185168	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45184985	45185089	45184985	ID=MS.gene071694.t1.exon10;Parent=MS.gene071694.t1
chr8.4	CDS	45184985	45185089	45184985	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45184739	45184865	45184739	ID=MS.gene071694.t1.exon11;Parent=MS.gene071694.t1
chr8.4	CDS	45184739	45184865	45184739	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45184596	45184647	45184596	ID=MS.gene071694.t1.exon12;Parent=MS.gene071694.t1
chr8.4	CDS	45184596	45184647	45184596	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45184433	45184504	45184433	ID=MS.gene071694.t1.exon13;Parent=MS.gene071694.t1
chr8.4	CDS	45184433	45184504	45184433	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1
chr8.4	exon	45183586	45183684	45183586	ID=MS.gene071694.t1.exon14;Parent=MS.gene071694.t1
chr8.4	CDS	45183586	45183684	45183586	ID=cds.MS.gene071694.t1;Parent=MS.gene071694.t1

Gene Sequence

>MS.gene071694

ATTCGTTAGCAATTTGACCGGTTCCTCGTTGCTCGAAATCGTGGCTCTTACGGTAACTATCCCTGTAAGTCAATTCTCAGTTATAATCTCAGCTTAAATATGATCTGAATTATATGATTAATGTTTTGTTTTCTTTTCTTTATTCAGATTTTGGTGCTTATTCGTCACTCTTTCACCTCCATTCCAATAAACTGGTTAGTCCCTTACACGACACTTCAAGACAGCTTATGAAAATAGCTTATAACTTACTTGAAAACAACTTATAATTTACACGAGAACAATTTGACTTTTATTTTATCTTTTGTTACAGAAATAGTTTATACATAAGCACTTATATGATAAGCATTTATGCTATAAGCGCTTAATTCCTTAATCTCTCCAGGATTACTTATGAAACCAACTTATAGCTTAAATAAAAACAGTCTGGCCTTATTTTTATCTGGTGTTACAGATATAGCTTATAGCTTTTTATGTAAGTATTTTTATGAAAATGCTTAATTAAGCTGTTTATCCAAATACGGCCAAGTTCATTGACACACAAAGCCAACTCTTTTTACTTTGTCATTCTCATTGTAATTCTGCTTGGATAATGGGGATTTTTTTATGTGATCATTATGGTTTGAATATTCTGGCTGTGAATTTCTGTTTGCTTCATTGCTAGGTCAATTTAGCTTATTGTGTACGCAATGTAGATATCATTGTTTTTTGCTCACTTGCTTTTCTCTTTTTTATTTATAGTTGACTCCCTGAAGAAGAAAAATGACGATGCACCTTCTGAGCATAGGAGTTTCAAAGCTTACCTAGCAACATTGACTATAGATTTTCTTGTCATCGTGTTCCTATGCTCTTATTTTTCACTGTAAGTGTCCTCGTTAGTACTAATTTTTTTGCTAACAATAGCAAATGTTGGGTTTGAAAATTACTTTTTTTTTTTTTTTTTTTGTTGTGGGGCGGGAGGAGTACATGACAATGAAGCTATGTTGCTAGCTAGGTTTTTGAATTAATTCTAGTCACTTTGTTATATAATTGCTACAATGAACTTGGTGACAGGTACTGGCTGACTCGAGCTATATCTTTGCAAGTTTGTTCACAATCGTAACATTACTTTATATTGCAGTTAAGAGGTAATTGTTCAATTTTCTTTAGCTAACTTTTATGACGAAAATAAGTTAGCCCAGAAGTTTAACATGAGCCAAATTTTGAAGCGGGTAATGGCTGACTTCCATACACTTAACTGCAGGCCTGGAGGTTCATCATCTGATTTAGGAGAGCCCAATTCTATTAGGGCATATATTACTTCGTACAGGGTTATTGTGGTATGGAGTGTGACTATAGAATTCTTTACTCCATTGTTTTGATCTTTTTGTGCTATTATGTTGATAAAAGTTATTTTTGCAGATGATATAACAGTCTTGTGCATCTTGGCTGTTGATTTCAGAATATTTCCTAGAAGATATGCGAAGACTGAAACATACGGAGCTAGTTTGGTAGGATTCTTTGACAGTTCTAAATTCATAAAAAATATTTTATTTTCTACACTTATCCAACAACAGGGTGATTGATTAACTTTTGAAGTAGTTTTGAGGGTCAAATTCCTTCTTTCATTAATGTATTTTAAGTTGGAAATATAAATGATATCCAGGTAATTTCTCATGGAATATATTCCTGTTTATCAATGACAAAAAATAGTTTTAAAGGTTGTTAAAGTATTTTTAAAAGTTAAGGGGTGGGGAGGTAGGTTCCCAAATTTCTTGGTTCGAACTTATATTTTAATGCCAGAGTCTATACAAACATTTCCCTCTCTCTCCCCTGCTTCTTCAATTTTTTTTGTCTCTCCTCCTAATTAAAGCAAATTCTTTGGGGGTGTAGTTTCTCTATGGACTCCAGTTCACTCTTTAGCAAGGTTATTTTATCTGACTTGTGAAGGGATTCGAGGCCTCTTTTAACCTATGCATTCATTTTCAATGTATTTGGTTTTGACTTAGGGGTTTCTCAATCTCATCATCCACTGTATTATTTATCACTTCAGTAATATATACAATTAAAGTTAATGTAGAGAAAAAGGAATGGGTGGGGGTTGGAGAGAATAGGTTTTTTAATCAATTTATAAATTGCTTCTATTTGTTGATTATATGAAGTTGCAATTTTGATCTCTATTTCTCTCCAACTGTTTTATAGATTCTGATCTGTACATACTATGTGGTGTCAATTTGTGTTGCTAATAAGATGTATAGTCAATACTTTAATTGTTCTGAAATTAGAAATTACTTCTGCATTGCAGATGGATCTTGGTGTTGGAGCATTTGTTTTAGCAAATTCATTAGTTTCTCGGCAAGCACGAAATATTGCTGCTGTGTAAGCATGTTTACACAATGAACTCTTAGAAATTAGCTGTTTTAGTATGTTAACTGAAATAGAAGAATCATGTTTACCTAGATGTAGAAATGCATTGTTTGTTGAGTTTGATAAATCATTAGTTTTCTAAAGGTTATACGTTAGTTTTTTTTTTTTTTTTTTACAAGCTCATACAATAGGCAAAGAAGCATTATTAACATGAACATGCTGGTAGGCTTTTGAAAATTACATTGCTGCTTTCCTAATTCTTTTACCTGCTCTGTAGTGACATTGATGTCTTTCTGGATGAACTTGTGCAAGTATATTGCATTCTGACATTCCTGTGATAACATCAGTTCTTTACTTGCTTCAGAAAATGGAAGACTGCAATAGTTTCATCTAGTCCACTTATCTTCTTAGGATTTTTTCGTTCTTGTTACCACAACTGGTGTGGATTATCAGGTGGGATTATATTCATTGAGATTCATAGAAATTTCTGTGCGAACAAACATTTTGACATGTATTTCCTAATACTGCATCTTATTTAACTTTAACAAGTATAATCACCTATGTGTTTTTTAAATTTTTATGTTAAATGATGTAGTTCTTGAAGACTATAATTAATAATCTGACCCCTAGGTTTTTTTTTTTTTTTTTTTTTGCACAATCGATTCACTTATGGTCAGAAATGAAATTTCATCTTGATTGTATTGGGTAGGATTATTTCATTTCATTATTACTCCTAGTACTAGTTCTTAATAGAGTTGAAACTATATTAGCTTAGACATTGAGGCCGTAAGAGTTTAGACGAAGAGATTTTAGAAATGCTCCAGTAATTAGCATTCAACATGCTTGATACTTATAACACACTTTCATAATTGATTACATTATATATCTACTAGGAAAATCAATTGCTGTTTCAAATGTACCATGTGGAAGAGGTTCATCAGTGGAAACAAACATTGGAGCCGTAAGATTTACATATTTTTTTAAATAAACGGATAAGCTTAAAGCACCGGTTAGAGGGGTAAAATCAAAATGGTCTCTCCCCCCACCCCTTAACCTAAATCTGTTTTTGTGTGTTCTTGTAAAGGAATGATGAGTAACAAGTGATTTTGCAATTGAAATTATGGGTTTGGTCGCAAATGATGTGATTAAGGCTAGAAGGAGAGCTAATCAAACCGACACATTATAGATATTAGAGTTTGGAAATATTAAGATAGAAATACCTTAGTTCTTAGAAGACATGGACGTAAAAGGATATACTTATCCTGATTGAGGTAGTACAACTTACGTTCTTAAAGCTTTAAAAATCTGAAGTGAAAAAAAGAGAGATGTAGATTTTTCCAGAAAGAGATGTTACTTGAGGGATAATTTAGTCTGTGAGGTGCTTCACGTTGAAGACTCTCATGTAACATATAAAATTGTTTGGGTTCTAATTGCCTAATTAATTAGTTCAAGTCATTTTCAAGGAAGCCAATAATATGTTTTTCTTTTCATTCTTTACAAATTGAGTTTTTGTCTAATTCACGATTTTCTCAAGGAAGCTTGTAATTGTTTTTCCTCAAATAGGTGCATTTGGCTGAATATGGTGTGCATTGGAATTTCTTCTTCACGCTTGCTGCTATCTCGATCCTTACATCCTTTATTAACATTCCTCCACAATATTCTGGGGTTTTTGGATCACTTGTCCTAGTAGGTACTTTTTTTTCTTTCTCATCCTTATGTCATCTTTTCTGAATCTGATTTTCTTATAAATTTGAATCAATGATTGAAGGGTATCAGTTCTGTTTGATGCATGGTTTAAATCATTATTTGCTTTCAAATGAAAGAGGAACGGATATCATAAGTCAAAACAAGGAGGGGATTTTTAGCATATTTGGTAAGGATTGCGACCTTGCGTTGTTCAATCATCATAATACAATTTCATGTCTGATGCATTTTACTTCTGATACATGGTATTTGTTACAAATATCTTTTTTTTTTTCTTTCCCCCTACAGGATATTGGGGTATGTACCTTATTGGTGTTCATATAGGAAACTATCTTCTCTTTGGAAGCCATTCCACTGCATTTAAGAGTAGCAGATGGTTTCGGATGAGAGTTTGGGTTCTATCAATCCTGTTCTGGTAAAAGAAAAGCTTAATCCCTAACTTATTTATCCTTTTGAATGAAGTCTACAGAATTAAACTTACACCTTTTTCATGATGCCCGAGTCAGGTTATTAACTGTGCTTCTAGATAGGCTTGTGGAAAGAATTTCACGGAGAACGGTATGTCTCACCATGTTATAGTTTCTTACTCGAAGGGCTTTCTGTTGGCACCAATGGATGAAAACTAACTAATTCTTGATAATTTGTGCAGTGCAACCTGCCATATGTTACTATGGTGTTGGCTGACAATCTACAGGGTCACTATCTCTCTCACCTCTGTTCTGTTCATTGGATCAGTGTTTAATATTGTGATGGTTTATAGCTTATATTGTAGTTGTCACTTTAGGATTCTTTTGTTGGCTCTATCTTGTTTAGTGTTTAAATTATATTTTTTCAATTGAATATTTTTGTAATAATCTGACATACTTAGTGCAGTAATGACTTGTTAAATTTGAAAAAACATAGATTAGTTTCTTAGCATTCTTTTTACACTGTCAAGTGATTGGTGCGCAGGGTGTGTGAGTGTTGTATACTTCAGGGTATCGACTTTGATACCTACTGATAAAAATTAAGTGTAAACATTTCTACACATGCATCCAATCATATCTCTACATGTAGATATTTGTGGAGATAAAGTGGAATCTTGGTGTAATTGATGTGATGCATCTGTTAAAATGTTTTAAAGTGTTAGTGCATAGATGTTAATCTCTTAATTTCTTATATCGTTGTTGCTGGTTTAGTTTTCAAATCAAACAATGACTTGTATAAATTTCTTATTCTTATTCAGAAATTGATTCTCAATGAAGGCTATTTAATGTTAGGAAAAAAAATATCCACAAGTCATTGTTTGATTTGAAAACTTGGACAAGAAACTTGGTCTAAGTTTAATCCTATGGATTTCTCAATAACTACTATTATCTTAATTTTGCAGCATTGCATACTTGAGCTATATCCAACATTGTAATTGCTAATTTGACATTTGATTTTGGATTTGATTCAAGTATTTAATCCGAATGGACACTCTTTTTCAGCTATTGTCAATTCTAACACTGGCTGATCTTATTCCTGGAAGTAAAACTTCAGTACTTGAAGAAGCACTTAATCGGAACTTACTTGCTACATTTCTTCTG

Protein sequence

>MS.gene071694.t1

IRUQFDRFLVARNRGSYGNYPYFGAYSSLFHLHSNKLVNIIVFCSLAFLFFIYSULPEEEKURCTFUAUEFQSLPSNIDYRFSCHRTGULELYLCKFVHNRNITLYCSUEAWRFIIUFRRAQFYUGIYYFVQGYCGMDYFCRUYNSLVHLGCUFQNISUKICEDUNIRSUFDGSWCWSICFSKFISFSASTKYCCCKMEDCNSFIUSTYLLRIFSFLLPQLVWIIRWDYIHUDSUKFLCAFGUIWCALEFLLHACCYLDPYILYUHSSTIFWGFWITCPSRVSVLFDAWFKSLFAFKUKRNGYHKSKQGGDFUHIWILGYVPYWCSYRKLSSLWKPFHCIUEUQMVSDESLGSINPVLVINCASRUACGKNFTENVQPAICYYGVGUQSTGSLSLSPLFSIVNSNTGUSYSWKUNFSTURSTUSELTCYISS