Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071735.t1 | XP_003589017.1 | 94.8 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 8.10E-159 | 569.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071735.t1 | G7IB84 | 94.8 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 5.8e-159 | 569.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049807 | MS.gene071735 | 0.803783 | 2.96E-49 | -1.69E-46 |
MS.gene053144 | MS.gene071735 | 0.811812 | 5.81E-51 | -1.69E-46 |
MS.gene054584 | MS.gene071735 | 0.83315 | 6.29E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071735.t1 | MTR_1g016410 | 94.771 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 0.0 | 593 |
MS.gene071735.t1 | MTR_1g016410 | 95.964 | 223 | 9 | 0 | 80 | 302 | 1 | 223 | 5.12e-160 | 445 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071735.t1 | AT5G11810 | 51.746 | 315 | 130 | 5 | 1 | 302 | 1 | 306 | 5.09e-107 | 314 |
Find 0 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAAAAGAAAATACCTAT+TGG | - | 10411:3153-3172 | MS.gene071735:intergenic | 15.0% |
!! | TATAAAAGAAAATACCTATT+GGG | - | 10411:3152-3171 | MS.gene071735:intergenic | 15.0% |
!!! | TTTAGTTTTAAAGATTAATG+AGG | + | 10411:4771-4790 | MS.gene071735:intron | 15.0% |
!! | AATTGATTAAGAAAGAAATG+TGG | - | 10411:3011-3030 | MS.gene071735:intergenic | 20.0% |
!! | ATATGACAATAATCAATTGT+TGG | + | 10411:3272-3291 | MS.gene071735:intron | 20.0% |
!! | ATTGATTAAGAAAGAAATGT+GGG | - | 10411:3010-3029 | MS.gene071735:intergenic | 20.0% |
!! | TAAGAAAAAGATACAGAATA+GGG | - | 10411:4558-4577 | MS.gene071735:intergenic | 20.0% |
!! | TTAAGAAAAAGATACAGAAT+AGG | - | 10411:4559-4578 | MS.gene071735:intergenic | 20.0% |
!!! | ATTTTCTTGATGATTTTGAT+TGG | - | 10411:3230-3249 | MS.gene071735:intergenic | 20.0% |
! | AATATTCACCAAACATGAAA+CGG | - | 10411:4090-4109 | MS.gene071735:intergenic | 25.0% |
! | ACAATAATCAATTGTTGGAT+TGG | + | 10411:3277-3296 | MS.gene071735:intron | 25.0% |
! | ATCAATTGTATGTGGTATAT+TGG | - | 10411:4658-4677 | MS.gene071735:intergenic | 25.0% |
! | ATCCAAAAAGAAATAAAGCA+AGG | - | 10411:4322-4341 | MS.gene071735:intergenic | 25.0% |
! | ATTAAAAAGAGAAGAGAGAA+AGG | - | 10411:2983-3002 | MS.gene071735:intergenic | 25.0% |
! | TTACAAAGTTATGCTATGAA+AGG | + | 10411:3980-3999 | MS.gene071735:CDS | 25.0% |
! | TTCATAGCATAACTTTGTAA+AGG | - | 10411:3980-3999 | MS.gene071735:intergenic | 25.0% |
! | TTGGTCAATAATTTGGAAAT+AGG | - | 10411:4610-4629 | MS.gene071735:intergenic | 25.0% |
! | TTTACAGGTTAAAGTGTAAT+GGG | + | 10411:3398-3417 | MS.gene071735:intron | 25.0% |
! | TTTGGTAGATAGGTTATAAT+GGG | + | 10411:4043-4062 | MS.gene071735:intron | 25.0% |
!! | AAATCTTTTAGTACCAAACT+TGG | + | 10411:3575-3594 | MS.gene071735:CDS | 25.0% |
!! | TTTTACAGGTTAAAGTGTAA+TGG | + | 10411:3397-3416 | MS.gene071735:intron | 25.0% |
!! | TTTTGGTAGATAGGTTATAA+TGG | + | 10411:4042-4061 | MS.gene071735:intron | 25.0% |
!!! | AAAACGAAGAAGTATTTTAC+AGG | + | 10411:3383-3402 | MS.gene071735:intron | 25.0% |
!!! | ATCCTTGCTTTATTTCTTTT+TGG | + | 10411:4317-4336 | MS.gene071735:intron | 25.0% |
AAGAAAATACCTATTGGGTA+AGG | - | 10411:3147-3166 | MS.gene071735:intergenic | 30.0% | |
AGATGATTGAAAAAACTGAG+TGG | + | 10411:4140-4159 | MS.gene071735:intron | 30.0% | |
ATGGGATAAAACTGAACATA+TGG | + | 10411:4061-4080 | MS.gene071735:intron | 30.0% | |
CATCTTGTTGGTCAATAATT+TGG | - | 10411:4617-4636 | MS.gene071735:intergenic | 30.0% | |
CATTAATTGCACTTTGTGTT+TGG | - | 10411:4282-4301 | MS.gene071735:intergenic | 30.0% | |
CATTCCCATAAACCTATATT+CGG | - | 10411:3522-3541 | MS.gene071735:intergenic | 30.0% | |
CATTCTGCATAACAAGAAAA+AGG | - | 10411:4878-4897 | MS.gene071735:intergenic | 30.0% | |
CTTACAGAATCAATTGTATG+TGG | - | 10411:4666-4685 | MS.gene071735:intergenic | 30.0% | |
GAAGGAAAACAAGATCAAAT+TGG | - | 10411:3727-3746 | MS.gene071735:intergenic | 30.0% | |
TAAAAGATTTCAACCCTGAA+TGG | - | 10411:3565-3584 | MS.gene071735:intergenic | 30.0% | |
TCTAACAATTCTATCATCCT+CGG | - | 10411:3078-3097 | MS.gene071735:intergenic | 30.0% | |
TGCAATTGAGCAATTAACAT+TGG | - | 10411:4391-4410 | MS.gene071735:intergenic | 30.0% | |
TTCTCCGAATATAGGTTTAT+GGG | + | 10411:3515-3534 | MS.gene071735:intron | 30.0% | |
TTTCTCCGAATATAGGTTTA+TGG | + | 10411:3514-3533 | MS.gene071735:intron | 30.0% | |
! | ACACAGGTATATGTTTTCTT+TGG | - | 10411:4195-4214 | MS.gene071735:intergenic | 30.0% |
! | ACATTTTCAGTGGAATCAAA+AGG | - | 10411:4168-4187 | MS.gene071735:intergenic | 30.0% |
! | AGGTTTGTTCATCATGAATT+TGG | - | 10411:3127-3146 | MS.gene071735:intergenic | 30.0% |
! | CACAGGTATATGTTTTCTTT+GGG | - | 10411:4194-4213 | MS.gene071735:intergenic | 30.0% |
! | GGTTTGTTCATCATGAATTT+GGG | - | 10411:3126-3145 | MS.gene071735:intergenic | 30.0% |
! | TGTTGTGTATCAAACACTTT+TGG | + | 10411:4212-4231 | MS.gene071735:intron | 30.0% |
! | TTATTGTAAGGCATCATTGT+TGG | + | 10411:4695-4714 | MS.gene071735:intron | 30.0% |
!! | ATACTTCTTCGTTTTTAACG+AGG | - | 10411:3378-3397 | MS.gene071735:intergenic | 30.0% |
!! | CTTTTTCTTGTTATGCAGAA+TGG | + | 10411:4876-4895 | MS.gene071735:intron | 30.0% |
!! | TTTTGATTCCACTGAAAATG+TGG | + | 10411:4167-4186 | MS.gene071735:intron | 30.0% |
!!! | AGGTAATTTAAGCTAGCTTT+TGG | + | 10411:4025-4044 | MS.gene071735:intron | 30.0% |
!!! | TGATGATTTTGATTGGATGA+CGG | - | 10411:3223-3242 | MS.gene071735:intergenic | 30.0% |
!!! | TGTAATGGGTACGATATTTT+AGG | + | 10411:3412-3431 | MS.gene071735:intron | 30.0% |
AAAGGAAACATGTAAAGCGA+AGG | - | 10411:4860-4879 | MS.gene071734:intergenic | 35.0% | |
AACAAACCTCCATGAAATCT+TGG | - | 10411:4456-4475 | MS.gene071735:intergenic | 35.0% | |
AAGCGTTTGCAGTTATTGTA+AGG | + | 10411:4683-4702 | MS.gene071735:intron | 35.0% | |
AAGTGTTTGATACACAACAC+AGG | - | 10411:4211-4230 | MS.gene071735:intergenic | 35.0% | |
ACTCTTGTCTGAGTTACTAT+TGG | + | 10411:3337-3356 | MS.gene071735:intron | 35.0% | |
ACTTAACAAGCCAAACACTA+GGG | - | 10411:4807-4826 | MS.gene071735:intergenic | 35.0% | |
ACTTTGTAAAGGATACAGTG+TGG | - | 10411:3969-3988 | MS.gene071735:intergenic | 35.0% | |
ATCACAAGACACTGATATTG+TGG | + | 10411:3646-3665 | MS.gene071735:CDS | 35.0% | |
ATGAACAAACCTTACCCAAT+AGG | + | 10411:3135-3154 | MS.gene071735:CDS | 35.0% | |
ATGTGGAAAGCTCCAAAATA+TGG | + | 10411:4951-4970 | MS.gene071735:CDS | 35.0% | |
CAAAGTTATGCTATGAAAGG+AGG | + | 10411:3983-4002 | MS.gene071735:CDS | 35.0% | |
CTATAATGACCAACCATTCA+GGG | + | 10411:3549-3568 | MS.gene071735:CDS | 35.0% | |
CTTAGAATTTCCCTAGTGTT+TGG | + | 10411:4794-4813 | MS.gene071735:intron | 35.0% | |
GCGAAGGAATAATACAGTAA+TGG | - | 10411:4844-4863 | MS.gene071735:intergenic | 35.0% | |
TAGTGAACAAAATGCTGATG+TGG | + | 10411:3775-3794 | MS.gene071735:CDS | 35.0% | |
TATGGTTTCCGTTTCATGTT+TGG | + | 10411:4079-4098 | MS.gene071735:intron | 35.0% | |
! | GCATTCTTTTCTCCGAATAT+AGG | + | 10411:3507-3526 | MS.gene071735:intron | 35.0% |
! | GGAAATAGGTTTAAAGCGAA+TGG | - | 10411:4596-4615 | MS.gene071735:intergenic | 35.0% |
! | GTTTTCCTTCCAAGATTTCA+TGG | + | 10411:4444-4463 | MS.gene071735:CDS | 35.0% |
! | TATGTAGTTTTCAGAAACCG+AGG | + | 10411:3058-3077 | MS.gene071735:intron | 35.0% |
! | TTTCTTGTTATGCAGAATGG+TGG | + | 10411:4879-4898 | MS.gene071735:intron | 35.0% |
!! | AAGATGATGGATCGATGAAA+CGG | - | 10411:2882-2901 | MS.gene071735:intergenic | 35.0% |
!! | TTCTTCGTTTTTAACGAGGA+GGG | - | 10411:3374-3393 | MS.gene071735:intergenic | 35.0% |
!! | TTTGATTTTTGCTTTGCTGC+AGG | + | 10411:4519-4538 | MS.gene071735:intron | 35.0% |
!!! | ACGAGATAGCTTTTAAGATG+TGG | + | 10411:4934-4953 | MS.gene071735:CDS | 35.0% |
!!! | GATCTTGTTTTCCTTCATGT+TGG | + | 10411:3731-3750 | MS.gene071735:CDS | 35.0% |
!!! | TAAGCTAGCTTTTGGTAGAT+AGG | + | 10411:4033-4052 | MS.gene071735:intron | 35.0% |
AAATGCTGATGTGGAGTTTG+TGG | + | 10411:3784-3803 | MS.gene071735:CDS | 40.0% | |
AACAACACTGAAGCCAAGTT+TGG | - | 10411:3591-3610 | MS.gene071735:intergenic | 40.0% | |
AACCTCCATGAAATCTTGGA+AGG | - | 10411:4452-4471 | MS.gene071735:intergenic | 40.0% | |
AGATTTCAACCCTGAATGGT+TGG | - | 10411:3561-3580 | MS.gene071735:intergenic | 40.0% | |
AGGTTTGTGTGAGAAGATGA+TGG | - | 10411:2895-2914 | MS.gene071735:intergenic | 40.0% | |
ATCTCACAATACCAGCAGAT+AGG | + | 10411:4904-4923 | MS.gene071735:CDS | 40.0% | |
CACTTAACAAGCCAAACACT+AGG | - | 10411:4808-4827 | MS.gene071735:intergenic | 40.0% | |
CTTCTTTGACACTGAAAACC+TGG | - | 10411:3921-3940 | MS.gene071735:intergenic | 40.0% | |
GAGCAATTAACATTGGCGAA+TGG | - | 10411:4384-4403 | MS.gene071735:intergenic | 40.0% | |
GCTATAATGACCAACCATTC+AGG | + | 10411:3548-3567 | MS.gene071735:CDS | 40.0% | |
TGTTGTTCAGTTGGATGAGT+TGG | + | 10411:3604-3623 | MS.gene071735:CDS | 40.0% | |
TTCCTTCCAAGATTTCATGG+AGG | + | 10411:4447-4466 | MS.gene071735:CDS | 40.0% | |
TTGTCTGTTGTCATGAGCTA+TGG | + | 10411:3872-3891 | MS.gene071735:CDS | 40.0% | |
! | AAGTTGCTTGGCTTTCAAGA+AGG | + | 10411:3683-3702 | MS.gene071735:CDS | 40.0% |
! | AGTTGCTTGGCTTTCAAGAA+GGG | + | 10411:3684-3703 | MS.gene071735:CDS | 40.0% |
! | CAGGTTTTCAGTGTCAAAGA+AGG | + | 10411:3919-3938 | MS.gene071735:CDS | 40.0% |
! | CTTTCAAGAAGGGAAGGTTT+TGG | + | 10411:3694-3713 | MS.gene071735:CDS | 40.0% |
! | GTTGAGATTCTCAAGTTGCT+TGG | + | 10411:3671-3690 | MS.gene071735:CDS | 40.0% |
!! | AGATGATGGATCGATGAAAC+GGG | - | 10411:2881-2900 | MS.gene071735:intergenic | 40.0% |
!! | CTTCTTCGTTTTTAACGAGG+AGG | - | 10411:3375-3394 | MS.gene071735:intergenic | 40.0% |
AATAATGAGACAAGCGCAGC+CGG | + | 10411:3823-3842 | MS.gene071735:CDS | 45.0% | |
AATTACCTCACATCCTTGCG+AGG | - | 10411:4013-4032 | MS.gene071735:intergenic | 45.0% | |
ACCTCCATACCAAATGATGC+AGG | + | 10411:4356-4375 | MS.gene071735:intron | 45.0% | |
AGAAGAGAGAAAGGAACCTG+AGG | - | 10411:2974-2993 | MS.gene071735:intergenic | 45.0% | |
CAACAAGATGTGTGCTTGAG+TGG | + | 10411:4627-4646 | MS.gene071735:intron | 45.0% | |
CACTCAAGCACACATCTTGT+TGG | - | 10411:4629-4648 | MS.gene071735:intergenic | 45.0% | |
CAGAATAGGGCCTCGTAATA+AGG | - | 10411:4545-4564 | MS.gene071735:intergenic | 45.0% | |
CTCGCAAGGATAATGTACAG+AGG | + | 10411:4422-4441 | MS.gene071735:CDS | 45.0% | |
GAAGAGAGAAAGGAACCTGA+GGG | - | 10411:2973-2992 | MS.gene071735:intergenic | 45.0% | |
GTCAAAGAAGGTTGACGAGA+AGG | + | 10411:3931-3950 | MS.gene071735:CDS | 45.0% | |
TATAGAATCAGCGATCGGCT+TGG | - | 10411:2844-2863 | MS.gene071735:intergenic | 45.0% | |
TCATGTTGGAGCTGGTGAAA+AGG | + | 10411:3745-3764 | MS.gene071735:CDS | 45.0% | |
TGTGGAGTTTGTGGATGCAT+TGG | + | 10411:3793-3812 | MS.gene071735:CDS | 45.0% | |
TGTTGTCATGAGCTATGGCA+AGG | + | 10411:3877-3896 | MS.gene071735:CDS | 45.0% | |
TTTCACCAGCTCCAACATGA+AGG | - | 10411:3745-3764 | MS.gene071735:intergenic | 45.0% | |
! | CTTTGGGTCCACATTTTCAG+TGG | - | 10411:4178-4197 | MS.gene071735:intergenic | 45.0% |
! | GAGTTTGTGGATGCATTGGT+TGG | + | 10411:3797-3816 | MS.gene071735:CDS | 45.0% |
! | GTTTTCCTTCATGTTGGAGC+TGG | + | 10411:3737-3756 | MS.gene071735:CDS | 45.0% |
! | TGGCTTCAGTGTTGTTCAGT+TGG | + | 10411:3595-3614 | MS.gene071735:CDS | 45.0% |
!! | AGCCGATCGCTGATTCTATA+CGG | + | 10411:2844-2863 | MS.gene071735:CDS | 45.0% |
ATAATGAGACAAGCGCAGCC+GGG | + | 10411:3824-3843 | MS.gene071735:CDS | 50.0% | |
CATGAGCTATGGCAAGGTCT+TGG | + | 10411:3883-3902 | MS.gene071735:CDS | 50.0% | |
CGAATGGTGCCTGCATCATT+TGG | - | 10411:4368-4387 | MS.gene071735:intergenic | 50.0% | |
CGAGAACCAACATCAGATCC+CGG | - | 10411:3845-3864 | MS.gene071735:intergenic | 50.0% | |
CGCCGTATAGAATCAGCGAT+CGG | - | 10411:2849-2868 | MS.gene071735:intergenic | 50.0% | |
CTCTCCAATTCCAATCCCTC+AGG | + | 10411:2955-2974 | MS.gene071735:CDS | 50.0% | |
GAGAAAGGAACCTGAGGGAT+TGG | - | 10411:2968-2987 | MS.gene071735:intergenic | 50.0% | |
GCCTGCATCATTTGGTATGG+AGG | - | 10411:4360-4379 | MS.gene071735:intergenic | 50.0% | |
GGAACCTGAGGGATTGGAAT+TGG | - | 10411:2962-2981 | MS.gene071735:intergenic | 50.0% | |
GGAGCTGGTGAAAAGGACAA+TGG | + | 10411:3752-3771 | MS.gene071735:CDS | 50.0% | |
GGTGCCTGCATCATTTGGTA+TGG | - | 10411:4363-4382 | MS.gene071735:intergenic | 50.0% | |
TCGTGCAAGAACCTATCTGC+TGG | - | 10411:4918-4937 | MS.gene071735:intergenic | 50.0% | |
TCTTGGAGGATGATGAGTCC+AGG | + | 10411:3900-3919 | MS.gene071735:CDS | 50.0% | |
! | GCTTGGCTTTCAAGAAGGGA+AGG | + | 10411:3688-3707 | MS.gene071735:CDS | 50.0% |
! | GGAGAGAGTTAAGAAAGCGC+AGG | - | 10411:2941-2960 | MS.gene071735:intergenic | 50.0% |
!! | TCGCTGATTCTATACGGCGA+TGG | + | 10411:2850-2869 | MS.gene071735:CDS | 50.0% |
!! | TTGCTGCAGGCCTTATTACG+AGG | + | 10411:4532-4551 | MS.gene071735:intron | 50.0% |
AGAGAGAAGCGAGGGACTGA+AGG | - | 10411:2915-2934 | MS.gene071735:intergenic | 55.0% | |
GAAAGGAGGAGTTCCTCGCA+AGG | + | 10411:3997-4016 | MS.gene071735:CDS | 55.0% | |
GAGCTATGGCAAGGTCTTGG+AGG | + | 10411:3886-3905 | MS.gene071735:CDS | 55.0% | |
GAGTTCCTCGCAAGGATGTG+AGG | + | 10411:4005-4024 | MS.gene071735:CDS | 55.0% | |
GCAACATGCTGTGACTCGCA+AGG | + | 10411:4408-4427 | MS.gene071735:CDS | 55.0% | |
GCAGGAAGAGAGAGAAGCGA+GGG | - | 10411:2923-2942 | MS.gene071735:intergenic | 55.0% | |
! | CACTTTTGGCGTGACTCGCA+AGG | + | 10411:4226-4245 | MS.gene071735:intron | 55.0% |
CGCAGGAAGAGAGAGAAGCG+AGG | - | 10411:2924-2943 | MS.gene071735:intergenic | 60.0% | |
GCGCAGCCGGGATCTGATGT+TGG | + | 10411:3836-3855 | MS.gene071735:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
10411 | gene | 2829 | 4980 | 2829 | ID=MS.gene071735 |
10411 | mRNA | 2829 | 4980 | 2829 | ID=MS.gene071735.t1;Parent=MS.gene071735 |
10411 | exon | 2829 | 2976 | 2829 | ID=MS.gene071735.t1.exon1;Parent=MS.gene071735.t1 |
10411 | CDS | 2829 | 2976 | 2829 | ID=cds.MS.gene071735.t1;Parent=MS.gene071735.t1 |
10411 | exon | 3072 | 3156 | 3072 | ID=MS.gene071735.t1.exon2;Parent=MS.gene071735.t1 |
10411 | CDS | 3072 | 3156 | 3072 | ID=cds.MS.gene071735.t1;Parent=MS.gene071735.t1 |
10411 | exon | 3529 | 4026 | 3529 | ID=MS.gene071735.t1.exon3;Parent=MS.gene071735.t1 |
10411 | CDS | 3529 | 4026 | 3529 | ID=cds.MS.gene071735.t1;Parent=MS.gene071735.t1 |
10411 | exon | 4378 | 4468 | 4378 | ID=MS.gene071735.t1.exon4;Parent=MS.gene071735.t1 |
10411 | CDS | 4378 | 4468 | 4378 | ID=cds.MS.gene071735.t1;Parent=MS.gene071735.t1 |
10411 | exon | 4894 | 4980 | 4894 | ID=MS.gene071735.t1.exon5;Parent=MS.gene071735.t1 |
10411 | CDS | 4894 | 4980 | 4894 | ID=cds.MS.gene071735.t1;Parent=MS.gene071735.t1 |
Gene Sequence |
Protein sequence |