Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071995.t1 | XP_013463376.1 | 95.3 | 448 | 21 | 0 | 1 | 448 | 1 | 448 | 5.60E-225 | 790 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071995.t1 | I3S3V7 | 95.3 | 448 | 21 | 0 | 1 | 448 | 1 | 448 | 4.1e-225 | 790.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051240 | MS.gene071995 | -0.817642 | 2.97E-52 | -1.69E-46 |
| MS.gene051242 | MS.gene071995 | -0.804889 | 1.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071995.t1 | MTR_2g438510 | 97.321 | 448 | 12 | 0 | 1 | 448 | 1 | 448 | 0.0 | 892 |
| MS.gene071995.t1 | MTR_7g088720 | 38.872 | 337 | 182 | 11 | 1 | 320 | 1 | 330 | 1.60e-58 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071995.t1 | AT3G56590 | 38.535 | 314 | 181 | 4 | 1 | 304 | 1 | 312 | 2.94e-60 | 204 |
| MS.gene071995.t1 | AT1G10790 | 37.126 | 334 | 197 | 6 | 1 | 322 | 1 | 333 | 4.97e-60 | 199 |
| MS.gene071995.t1 | AT3G56590 | 34.121 | 381 | 210 | 6 | 25 | 367 | 34 | 411 | 5.84e-52 | 182 |
| MS.gene071995.t1 | AT3G10810 | 37.898 | 314 | 185 | 4 | 1 | 306 | 1 | 312 | 3.42e-50 | 177 |
| MS.gene071995.t1 | AT3G10810 | 37.898 | 314 | 185 | 4 | 1 | 306 | 1 | 312 | 3.43e-50 | 177 |
Find 96 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTACACTGGATTTAT+TGG | 0.142617 | 2.4:-75249989 | None:intergenic |
| CTTTCGTTTCTGTAATCTTT+TGG | 0.184778 | 2.4:+75247851 | MS.gene071995:CDS |
| GCTTTGGCAATGGGGAAAAT+TGG | 0.213954 | 2.4:+75247706 | None:intergenic |
| ACTGTAACAACATCAGTATT+TGG | 0.243764 | 2.4:+75250061 | MS.gene071995:CDS |
| TTTGAGATCTTAAAGTTTCC+TGG | 0.282888 | 2.4:+75250097 | MS.gene071995:CDS |
| TTTGAGGAAGAATTGAAGTT+TGG | 0.294679 | 2.4:+75250232 | MS.gene071995:CDS |
| CTAGCTTCGAATTTGTGTTT+AGG | 0.304005 | 2.4:-75247880 | None:intergenic |
| CCACGGAGAAATCTTGCTAA+TGG | 0.308030 | 2.4:+75251731 | MS.gene071995:CDS |
| TCTTCTAATCTTTCAATGTA+TGG | 0.309011 | 2.4:-75249752 | None:intergenic |
| GGATTTATTGGAACGTTCAT+TGG | 0.310537 | 2.4:-75249977 | None:intergenic |
| GGCCGAAAACTACGTTATTA+AGG | 0.314508 | 2.4:-75251131 | None:intergenic |
| GCATGATATGGTGAAATTAA+TGG | 0.316702 | 2.4:-75251252 | None:intergenic |
| GGCTGGAAGTATATGATATA+GGG | 0.321667 | 2.4:-75251395 | None:intergenic |
| ACAAAAGTGTTGCACCTAAT+TGG | 0.324944 | 2.4:+75249924 | MS.gene071995:CDS |
| CCCTTCTGTGCAGCTTCAGC+AGG | 0.327007 | 2.4:+75251699 | MS.gene071995:intron |
| GAATAAGAGGGAGCATGATA+TGG | 0.333268 | 2.4:-75251264 | None:intergenic |
| TTACAGTCAGGTAGGTTTGC+TGG | 0.346735 | 2.4:-75250045 | None:intergenic |
| AATTGGTCTGACGTGGTATT+TGG | 0.346861 | 2.4:+75249941 | MS.gene071995:CDS |
| TGGCTGGAAGTATATGATAT+AGG | 0.362942 | 2.4:-75251396 | None:intergenic |
| CACGGAGAAATCTTGCTAAT+GGG | 0.364051 | 2.4:+75251732 | MS.gene071995:CDS |
| TTAGCAGTTGCTGGGGATAT+AGG | 0.369010 | 2.4:-75251288 | None:intergenic |
| GCTATTTGTTTCAATCTTTG+TGG | 0.376352 | 2.4:-75251072 | None:intergenic |
| CACACTGCTGGAAACAATCT+TGG | 0.388783 | 2.4:+75251108 | MS.gene071995:CDS |
| TGGGGATATAGGAGAATAAG+AGG | 0.392880 | 2.4:-75251277 | None:intergenic |
| CTCATGTTCAAGCATCCTTC+AGG | 0.393016 | 2.4:+75249702 | MS.gene071995:CDS |
| GTTTCAATCTTTGTGGCAAA+AGG | 0.396433 | 2.4:-75251065 | None:intergenic |
| AATACCACGTCAGACCAATT+AGG | 0.396698 | 2.4:-75249938 | None:intergenic |
| TTGGCTAATACCTTCGTGTT+TGG | 0.399445 | 2.4:-75249800 | None:intergenic |
| CAAGGTGTCTTAGCAGTTGC+TGG | 0.399672 | 2.4:-75251297 | None:intergenic |
| GGTAGGTTTGCTGGAGAAAC+AGG | 0.399705 | 2.4:-75250036 | None:intergenic |
| CTGTAACAACATCAGTATTT+GGG | 0.407074 | 2.4:+75250062 | MS.gene071995:CDS |
| TCGGCTGCACGTGGCAGATC+AGG | 0.411986 | 2.4:-75251435 | None:intergenic |
| GTTATCCAGGACTTCAGATA+TGG | 0.429077 | 2.4:-75250200 | None:intergenic |
| TCGGCCAAGTCAGAGAAATC+AGG | 0.429255 | 2.4:+75251148 | MS.gene071995:CDS |
| CGATGAAGGTGCACGGTGTT+CGG | 0.433041 | 2.4:+75247771 | MS.gene071995:CDS |
| AGCTTGTCCTGTAGTAGTGC+AGG | 0.459369 | 2.4:+75251017 | MS.gene071995:CDS |
| TATGGAATAAGCTGTGAAAC+TGG | 0.468542 | 2.4:-75249734 | None:intergenic |
| CAAAATCATCAAAGTTATCC+AGG | 0.471543 | 2.4:-75250213 | None:intergenic |
| TCATTCCATATCTGAAGTCC+TGG | 0.479722 | 2.4:+75250195 | MS.gene071995:CDS |
| CAGGTTATCTTCTTTACTGA+AGG | 0.480171 | 2.4:+75251167 | MS.gene071995:CDS |
| AGAAACCCGAGTTGTGTGGC+TGG | 0.494348 | 2.4:-75251412 | None:intergenic |
| ATAACCTGATTTCTCTGACT+TGG | 0.513908 | 2.4:-75251152 | None:intergenic |
| CAGAGTGATCAGTTAACTGT+GGG | 0.517119 | 2.4:-75251227 | None:intergenic |
| ACTGAAGCCTGCACTACTAC+AGG | 0.519585 | 2.4:-75251024 | None:intergenic |
| TTCTGTGCAGCTTCAGCAGG+CGG | 0.525936 | 2.4:+75251702 | MS.gene071995:intron |
| CGTGCAGCCGATGTTTCTCA+TGG | 0.528267 | 2.4:+75251447 | MS.gene071995:CDS |
| GTTAACTGTGGGGATGGAGC+AGG | 0.533743 | 2.4:-75251216 | None:intergenic |
| AAGGTGTCTTAGCAGTTGCT+GGG | 0.537500 | 2.4:-75251296 | None:intergenic |
| AGATCTTAAAGTTTCCTGGT+GGG | 0.540304 | 2.4:+75250101 | MS.gene071995:CDS |
| TGTGGGGATGGAGCAGGAGC+TGG | 0.543549 | 2.4:-75251210 | None:intergenic |
| ATAAACTTACATGGAGAGGA+TGG | 0.548041 | 2.4:-75251528 | None:intergenic |
| TGTTCAAGCATCCTTCAGGC+TGG | 0.554060 | 2.4:+75249706 | MS.gene071995:CDS |
| CAAACAGTAAAACACACTGC+TGG | 0.555721 | 2.4:+75251096 | MS.gene071995:CDS |
| TGATCAGTTAACTGTGGGGA+TGG | 0.555827 | 2.4:-75251222 | None:intergenic |
| GAATCAGCAGGAGAATAAGC+TGG | 0.558449 | 2.4:-75251372 | None:intergenic |
| GAGATCTTAAAGTTTCCTGG+TGG | 0.566552 | 2.4:+75250100 | MS.gene071995:CDS |
| GAACAGAGGCAAAACGATGA+AGG | 0.566636 | 2.4:+75247757 | MS.gene071995:CDS |
| ATACTTCCAGCCACACAACT+CGG | 0.570902 | 2.4:+75251406 | MS.gene071995:CDS |
| GCTGGAAGTATATGATATAG+GGG | 0.570981 | 2.4:-75251394 | None:intergenic |
| TGATGTTGTTACAGTCAGGT+AGG | 0.571775 | 2.4:-75250053 | None:intergenic |
| ATACTGATGTTGTTACAGTC+AGG | 0.578215 | 2.4:-75250057 | None:intergenic |
| TACTTCCAGCCACACAACTC+GGG | 0.579652 | 2.4:+75251407 | MS.gene071995:CDS |
| AATGATGTAATTAAGCATAG+AGG | 0.580743 | 2.4:+75247913 | MS.gene071995:CDS |
| CACATAGAAACAGACTGCAC+TGG | 0.581225 | 2.4:-75250136 | None:intergenic |
| TGCAGGCTTCAGTCATGCGA+GGG | 0.581545 | 2.4:+75251034 | MS.gene071995:CDS |
| CACAATGGACGGTGAAGGTG+AGG | 0.584961 | 2.4:-75251337 | None:intergenic |
| TCAGCAGGCGGTGATTTCCA+CGG | 0.591028 | 2.4:+75251714 | MS.gene071995:CDS |
| GGTATTACAGTCAACCCACC+AGG | 0.602265 | 2.4:-75250115 | None:intergenic |
| GTGAAGGTGAGGATACTTCA+CGG | 0.604933 | 2.4:-75251326 | None:intergenic |
| CTTGACTCCATGAGAAACAT+CGG | 0.606693 | 2.4:-75251454 | None:intergenic |
| TATGATATAGGGGAATCAGC+AGG | 0.609066 | 2.4:-75251384 | None:intergenic |
| TTCAGCACACTCAAGTACAC+TGG | 0.610830 | 2.4:-75249998 | None:intergenic |
| TTCTATGTGGCAGATACGTG+AGG | 0.614118 | 2.4:+75250150 | MS.gene071995:CDS |
| ACAGATAAACTTACATGGAG+AGG | 0.624750 | 2.4:-75251532 | None:intergenic |
| GGATGCTCAGTCACAATGGA+CGG | 0.627514 | 2.4:-75251348 | None:intergenic |
| TCAGTCACAATGGACGGTGA+AGG | 0.629292 | 2.4:-75251342 | None:intergenic |
| GATACTTCACGGTCAAAACA+AGG | 0.629571 | 2.4:-75251315 | None:intergenic |
| GGCAAAACGATGAAGGTGCA+CGG | 0.631187 | 2.4:+75247764 | MS.gene071995:CDS |
| CAGTGCAGTCTGTTTCTATG+TGG | 0.631558 | 2.4:+75250137 | MS.gene071995:CDS |
| GTGCAGGCTTCAGTCATGCG+AGG | 0.636959 | 2.4:+75251033 | MS.gene071995:CDS |
| CAGGAGAAACCCGAGTTGTG+TGG | 0.637145 | 2.4:-75251416 | None:intergenic |
| TGAGAAACATCGGCTGCACG+TGG | 0.641644 | 2.4:-75251444 | None:intergenic |
| TCAGAGTGATCAGTTAACTG+TGG | 0.652727 | 2.4:-75251228 | None:intergenic |
| AGGTGTCTTAGCAGTTGCTG+GGG | 0.653842 | 2.4:-75251295 | None:intergenic |
| AGTCAAGCTTCGCCAAGACG+AGG | 0.659244 | 2.4:+75251470 | MS.gene071995:CDS |
| TGGAGGATGCTCAGTCACAA+TGG | 0.659309 | 2.4:-75251352 | None:intergenic |
| ACGCGCAACAAGAAGAACAG+AGG | 0.672031 | 2.4:+75247743 | MS.gene071995:CDS |
| TGCACCTAATTGGTCTGACG+TGG | 0.680415 | 2.4:+75249934 | MS.gene071995:CDS |
| AATATCTCTGCCAAACACGA+AGG | 0.688962 | 2.4:+75249790 | MS.gene071995:CDS |
| GGGGATATAGGAGAATAAGA+GGG | 0.705624 | 2.4:-75251276 | None:intergenic |
| TCAGCAGGAGAATAAGCTGG+AGG | 0.707480 | 2.4:-75251369 | None:intergenic |
| GAACGTTCATTGGATCAGAG+AGG | 0.710677 | 2.4:-75249967 | None:intergenic |
| ATTGCATCTGAAGTCTGATG+AGG | 0.712979 | 2.4:+75250255 | MS.gene071995:CDS |
| CCATTAGCAAGATTTCTCCG+TGG | 0.732743 | 2.4:-75251731 | None:intergenic |
| GTGCAAATAACAAATGCACG+CGG | 0.750381 | 2.4:+75250985 | MS.gene071995:CDS |
| AGAGTGATCAGTTAACTGTG+GGG | 0.756817 | 2.4:-75251226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAACTTAAAGAATAA+AGG | + | chr2.4:75250508-75250527 | MS.gene071995:intron | 10.0% |
| !!! | CCAAAATAACTAAATTTTTT+AGG | + | chr2.4:75249447-75249466 | MS.gene071995:intron | 15.0% |
| !!! | CCTAAAAAATTTAGTTATTT+TGG | - | chr2.4:75249450-75249469 | None:intergenic | 15.0% |
| !!! | GAAATTTAAATTTTAGAAGT+TGG | + | chr2.4:75250894-75250913 | MS.gene071995:intron | 15.0% |
| !!! | TGTTATTATTTTGCATTTTT+TGG | + | chr2.4:75250588-75250607 | MS.gene071995:intron | 15.0% |
| !!! | TTATAATTTTATACCGATTA+TGG | + | chr2.4:75248170-75248189 | MS.gene071995:intron | 15.0% |
| !! | AAAAAAGTGAACAATTTACA+AGG | - | chr2.4:75248870-75248889 | None:intergenic | 20.0% |
| !! | AAATTTAAATCGTCAATTAG+TGG | + | chr2.4:75248650-75248669 | MS.gene071995:intron | 20.0% |
| !! | ATTGTAATAATAGTTACTGT+TGG | + | chr2.4:75248997-75249016 | MS.gene071995:intron | 20.0% |
| !! | ATTTAAATTTCATTTGCTCA+AGG | - | chr2.4:75250885-75250904 | None:intergenic | 20.0% |
| !! | GATTTCAAAATTCAAAAGTA+GGG | + | chr2.4:75248231-75248250 | MS.gene071995:intron | 20.0% |
| !! | TAAATAATGAATCTTTCTTG+TGG | - | chr2.4:75250549-75250568 | None:intergenic | 20.0% |
| !! | TCCATAAATTTAAACTTTGA+AGG | + | chr2.4:75249378-75249397 | MS.gene071995:intron | 20.0% |
| !! | TCCTTCAAAGTTTAAATTTA+TGG | - | chr2.4:75249382-75249401 | None:intergenic | 20.0% |
| !! | TGAGATAGTATTATGATTTA+TGG | + | chr2.4:75248744-75248763 | MS.gene071995:intron | 20.0% |
| !! | TTCATTTGAATTCTTATTGT+TGG | + | chr2.4:75249628-75249647 | MS.gene071995:intron | 20.0% |
| !!! | ACAATTTTCTGAAATATTCA+TGG | + | chr2.4:75250454-75250473 | MS.gene071995:intron | 20.0% |
| !!! | AGGGATTAGATTTTTTTTTT+TGG | + | chr2.4:75248250-75248269 | MS.gene071995:intron | 20.0% |
| !!! | ATATTTTGAGAATTGCAATT+TGG | + | chr2.4:75250304-75250323 | MS.gene071995:intron | 20.0% |
| !!! | CTATTATAGATTGTTGATTT+CGG | + | chr2.4:75248337-75248356 | MS.gene071995:intron | 20.0% |
| !!! | TATGAGAGTATTATGATTTA+TGG | + | chr2.4:75248582-75248601 | MS.gene071995:intron | 20.0% |
| !!! | TATTTTGAGAATTGCAATTT+GGG | + | chr2.4:75250305-75250324 | MS.gene071995:intron | 20.0% |
| !!! | TTTTTTTTTGGATCAAATTC+AGG | + | chr2.4:75248262-75248281 | MS.gene071995:intron | 20.0% |
| ! | AATGATGTAATTAAGCATAG+AGG | + | chr2.4:75247913-75247932 | MS.gene071995:CDS | 25.0% |
| ! | ATAGTATTATGATTTATGGC+AGG | + | chr2.4:75248748-75248767 | MS.gene071995:intron | 25.0% |
| ! | CATATCTCATTAACATGTAA+GGG | - | chr2.4:75248433-75248452 | None:intergenic | 25.0% |
| ! | CGAAATCAACAATCTATAAT+AGG | - | chr2.4:75248339-75248358 | None:intergenic | 25.0% |
| ! | CGATTTCAAAATTCAAAAGT+AGG | + | chr2.4:75248230-75248249 | MS.gene071995:intron | 25.0% |
| ! | CTAATAGTTGTAATACTACT+TGG | - | chr2.4:75249049-75249068 | None:intergenic | 25.0% |
| ! | CTCAAAATATTAAGTGAAAC+AGG | - | chr2.4:75250294-75250313 | None:intergenic | 25.0% |
| ! | GAAAACAAGAATGTAGAAAA+TGG | - | chr2.4:75250753-75250772 | None:intergenic | 25.0% |
| ! | TAAATACAGTTAGAGAATTG+AGG | + | chr2.4:75249323-75249342 | MS.gene071995:intron | 25.0% |
| ! | TAATACTCTCATACAAAGTA+TGG | - | chr2.4:75248575-75248594 | None:intergenic | 25.0% |
| ! | TACTATCTCAATACAAAGTA+TGG | - | chr2.4:75248734-75248753 | None:intergenic | 25.0% |
| ! | TCTTAATCAACTCATGATTT+AGG | - | chr2.4:75250838-75250857 | None:intergenic | 25.0% |
| ! | TCTTCTAATCTTTCAATGTA+TGG | - | chr2.4:75249755-75249774 | None:intergenic | 25.0% |
| ! | TGAAAATAGTATGATAGCAT+CGG | + | chr2.4:75248363-75248382 | MS.gene071995:intron | 25.0% |
| ! | TTATTAACCAATAGAGAACT+AGG | - | chr2.4:75250627-75250646 | None:intergenic | 25.0% |
| !! | AGAGTATTATGATTTATGGT+TGG | + | chr2.4:75248586-75248605 | MS.gene071995:intron | 25.0% |
| !! | ATTAAAACCTAGTTCTCTAT+TGG | + | chr2.4:75250617-75250636 | MS.gene071995:intron | 25.0% |
| !! | CAAAACAAAATTTTCTTGTC+TGG | + | chr2.4:75250413-75250432 | MS.gene071995:intron | 25.0% |
| !! | TGATGCTATTTGTCATAATT+AGG | + | chr2.4:75248076-75248095 | MS.gene071995:intron | 25.0% |
| !!! | AATTTGTCATTTTTACCTTC+AGG | + | chr2.4:75248934-75248953 | MS.gene071995:intron | 25.0% |
| !!! | TATCACTCATAAGTTTGTTA+TGG | + | chr2.4:75249558-75249577 | MS.gene071995:intron | 25.0% |
| !!! | TTTTCTGAAATATTCATGGA+AGG | + | chr2.4:75250458-75250477 | MS.gene071995:intron | 25.0% |
| AAAATGTAAGAGAAGAAGCT+TGG | - | chr2.4:75249822-75249841 | None:intergenic | 30.0% | |
| AACTAGAAGCTGATAACTAA+TGG | + | chr2.4:75250645-75250664 | MS.gene071995:intron | 30.0% | |
| AAGCAATAGAAAGGAAAGAA+GGG | - | chr2.4:75251567-75251586 | None:intergenic | 30.0% | |
| ACTGTAACAACATCAGTATT+TGG | + | chr2.4:75250061-75250080 | MS.gene071995:CDS | 30.0% | |
| AGATTTAAATCGTCAGTAAG+TGG | + | chr2.4:75248505-75248524 | MS.gene071995:intron | 30.0% | |
| AGGATATTTATTCCAAATCC+TGG | + | chr2.4:75249343-75249362 | MS.gene071995:intron | 30.0% | |
| AGTTACTGTTGGAAATAGAA+TGG | + | chr2.4:75249008-75249027 | MS.gene071995:intron | 30.0% | |
| ATTAAGTGAAACAGGTTATG+AGG | - | chr2.4:75250286-75250305 | None:intergenic | 30.0% | |
| CAAAATCATCAAAGTTATCC+AGG | - | chr2.4:75250216-75250235 | None:intergenic | 30.0% | |
| CTATGACAGATAAACTTACA+TGG | - | chr2.4:75251540-75251559 | None:intergenic | 30.0% | |
| CTGTAACAACATCAGTATTT+GGG | + | chr2.4:75250062-75250081 | MS.gene071995:CDS | 30.0% | |
| GCATACAAACATTCTTATTG+AGG | + | chr2.4:75248452-75248471 | MS.gene071995:intron | 30.0% | |
| GCATATCTCATTAACATGTA+AGG | - | chr2.4:75248434-75248453 | None:intergenic | 30.0% | |
| GCATGATATGGTGAAATTAA+TGG | - | chr2.4:75251255-75251274 | None:intergenic | 30.0% | |
| GCTATTTGTTTCAATCTTTG+TGG | - | chr2.4:75251075-75251094 | None:intergenic | 30.0% | |
| GTTATATCGAAGCAATAGAA+AGG | - | chr2.4:75251576-75251595 | None:intergenic | 30.0% | |
| TCAAAACACGAAATTGAAAG+TGG | - | chr2.4:75247947-75247966 | None:intergenic | 30.0% | |
| TCTATAATAGGCATGAATCA+CGG | - | chr2.4:75248327-75248346 | None:intergenic | 30.0% | |
| TCTTATTGAGGTGTGTTTAT+GGG | + | chr2.4:75248464-75248483 | MS.gene071995:intron | 30.0% | |
| TGAAATATTCATGGAAGGAA+AGG | + | chr2.4:75250463-75250482 | MS.gene071995:intron | 30.0% | |
| TGCTTATATGATTTACCTGA+AGG | - | chr2.4:75248952-75248971 | None:intergenic | 30.0% | |
| TGTCTACATTTACCAAAAAG+AGG | - | chr2.4:75248915-75248934 | None:intergenic | 30.0% | |
| TTCAGGTATAACATGTTAAG+TGG | + | chr2.4:75248279-75248298 | MS.gene071995:intron | 30.0% | |
| TTCTTATTGAGGTGTGTTTA+TGG | + | chr2.4:75248463-75248482 | MS.gene071995:intron | 30.0% | |
| TTTATTTCGCTGTATTCGAT+TGG | + | chr2.4:75248021-75248040 | MS.gene071995:intron | 30.0% | |
| TTTGAGGAAGAATTGAAGTT+TGG | + | chr2.4:75250232-75250251 | MS.gene071995:CDS | 30.0% | |
| ! | CTTTCGTTTCTGTAATCTTT+TGG | + | chr2.4:75247851-75247870 | MS.gene071995:CDS | 30.0% |
| ! | TGCACATTGATATCTTTTAC+TGG | + | chr2.4:75249471-75249490 | MS.gene071995:intron | 30.0% |
| ! | TTCGTTGTATCTGATCTTTT+AGG | + | chr2.4:75249097-75249116 | MS.gene071995:intron | 30.0% |
| ! | TTTGAGATCTTAAAGTTTCC+TGG | + | chr2.4:75250097-75250116 | MS.gene071995:CDS | 30.0% |
| !! | AGAAAGGTATTGCAACTTTA+AGG | - | chr2.4:75250363-75250382 | None:intergenic | 30.0% |
| !! | GGATAACTTTGATGATTTTG+AGG | + | chr2.4:75250216-75250235 | MS.gene071995:CDS | 30.0% |
| !! | TATGATTTATGGTTGGTAAG+AGG | + | chr2.4:75248593-75248612 | MS.gene071995:intron | 30.0% |
| !! | TCTTCTAGAGTTGTGAAAAA+AGG | - | chr2.4:75248796-75248815 | None:intergenic | 30.0% |
| !! | TTATAGATTGTTGATTTCGG+AGG | + | chr2.4:75248340-75248359 | MS.gene071995:intron | 30.0% |
| !!! | ATTAGCCACTTTTTATGTCT+GGG | - | chr2.4:75249863-75249882 | None:intergenic | 30.0% |
| !!! | CATTCTCTTTTTCAGTTTAG+CGG | + | chr2.4:75247828-75247847 | MS.gene071995:CDS | 30.0% |
| !!! | GTTTTGACTTTTGAGTGAAA+TGG | - | chr2.4:75250341-75250360 | None:intergenic | 30.0% |
| !!! | TAACTGAGAAGCCAATTTTT+TGG | - | chr2.4:75251502-75251521 | None:intergenic | 30.0% |
| !!! | TATTAGCCACTTTTTATGTC+TGG | - | chr2.4:75249864-75249883 | None:intergenic | 30.0% |
| !!! | TCTCTTACATTTTTTTCCTC+AGG | + | chr2.4:75249829-75249848 | MS.gene071995:intron | 30.0% |
| AAGCTAGTTACTCTTAACAC+AGG | + | chr2.4:75249883-75249902 | MS.gene071995:intron | 35.0% | |
| AAGGCAAACAACAATTGCTA+AGG | - | chr2.4:75248700-75248719 | None:intergenic | 35.0% | |
| ACAGATAAACTTACATGGAG+AGG | - | chr2.4:75251535-75251554 | None:intergenic | 35.0% | |
| ACATGTATAGTGCAGTACAA+AGG | - | chr2.4:75249526-75249545 | None:intergenic | 35.0% | |
| ACTCAAGCATATTCAGAATC+TGG | + | chr2.4:75249223-75249242 | MS.gene071995:intron | 35.0% | |
| ACTTATGAGTGATAGTTGCA+CGG | - | chr2.4:75249552-75249571 | None:intergenic | 35.0% | |
| AGATCTTAAAGTTTCCTGGT+GGG | + | chr2.4:75250101-75250120 | MS.gene071995:CDS | 35.0% | |
| ATAAACTTACATGGAGAGGA+TGG | - | chr2.4:75251531-75251550 | None:intergenic | 35.0% | |
| ATAACCTGATTTCTCTGACT+TGG | - | chr2.4:75251155-75251174 | None:intergenic | 35.0% | |
| ATACTGATGTTGTTACAGTC+AGG | - | chr2.4:75250060-75250079 | None:intergenic | 35.0% | |
| CAGGTTATCTTCTTTACTGA+AGG | + | chr2.4:75251167-75251186 | MS.gene071995:CDS | 35.0% | |
| CTAGCTTCGAATTTGTGTTT+AGG | - | chr2.4:75247883-75247902 | None:intergenic | 35.0% | |
| CTCAAGCATATTCAGAATCT+GGG | + | chr2.4:75249224-75249243 | MS.gene071995:intron | 35.0% | |
| CTCAAGTACACTGGATTTAT+TGG | - | chr2.4:75249992-75250011 | None:intergenic | 35.0% | |
| CTCAGCAGAATGATACATTT+AGG | - | chr2.4:75249193-75249212 | None:intergenic | 35.0% | |
| CTTGAACATGAGCTGAAAAT+TGG | - | chr2.4:75249694-75249713 | None:intergenic | 35.0% | |
| GAAGCAATAGAAAGGAAAGA+AGG | - | chr2.4:75251568-75251587 | None:intergenic | 35.0% | |
| GGATTTATTGGAACGTTCAT+TGG | - | chr2.4:75249980-75249999 | None:intergenic | 35.0% | |
| GTGATCACAAACACCATAAT+CGG | - | chr2.4:75248186-75248205 | None:intergenic | 35.0% | |
| GTTTCAATCTTTGTGGCAAA+AGG | - | chr2.4:75251068-75251087 | None:intergenic | 35.0% | |
| TAGAAGCTGATAACTAATGG+CGG | + | chr2.4:75250648-75250667 | MS.gene071995:intron | 35.0% | |
| TATGGAATAAGCTGTGAAAC+TGG | - | chr2.4:75249737-75249756 | None:intergenic | 35.0% | |
| ! | AATTAGGTGCAACACTTTTG+TGG | - | chr2.4:75249925-75249944 | None:intergenic | 35.0% |
| ! | ACTCACAATTTTCCAGGATT+TGG | - | chr2.4:75249358-75249377 | None:intergenic | 35.0% |
| ! | CTAGAAGACTCTTGATGTTT+TGG | + | chr2.4:75248808-75248827 | MS.gene071995:intron | 35.0% |
| ! | GCTGGAAGTATATGATATAG+GGG | - | chr2.4:75251397-75251416 | None:intergenic | 35.0% |
| ! | GGATTTGAGGTGTATTGAAA+CGG | + | chr2.4:75248042-75248061 | MS.gene071995:intron | 35.0% |
| ! | GGCCTTAATAACGTAGTTTT+CGG | + | chr2.4:75251129-75251148 | MS.gene071995:CDS | 35.0% |
| ! | GGCTGGAAGTATATGATATA+GGG | - | chr2.4:75251398-75251417 | None:intergenic | 35.0% |
| ! | TAGGCTATGCTAGTTTGATT+AGG | - | chr2.4:75250819-75250838 | None:intergenic | 35.0% |
| ! | TATGGAACTCACAATTTTCC+AGG | - | chr2.4:75249364-75249383 | None:intergenic | 35.0% |
| ! | TGGCTGGAAGTATATGATAT+AGG | - | chr2.4:75251399-75251418 | None:intergenic | 35.0% |
| ! | TGTTTTTCACCCACTCAAAA+AGG | - | chr2.4:75250699-75250718 | None:intergenic | 35.0% |
| ! | TTGTCAAACGTTCCTCTTTT+TGG | + | chr2.4:75248900-75248919 | MS.gene071995:intron | 35.0% |
| !! | ACAAAAGTGTTGCACCTAAT+TGG | + | chr2.4:75249924-75249943 | MS.gene071995:CDS | 35.0% |
| !! | GATTTTGAGAGAAGTCAGAA+AGG | - | chr2.4:75250379-75250398 | None:intergenic | 35.0% |
| !! | GCAATTGTTGTTTGCCTTAT+CGG | + | chr2.4:75248702-75248721 | MS.gene071995:intron | 35.0% |
| AACAACAATTGCTAAGGTGC+AGG | - | chr2.4:75248694-75248713 | None:intergenic | 40.0% | |
| AAGTATGGATCTTGCCGATA+AGG | - | chr2.4:75248719-75248738 | None:intergenic | 40.0% | |
| AATACCACGTCAGACCAATT+AGG | - | chr2.4:75249941-75249960 | None:intergenic | 40.0% | |
| AATATCTCTGCCAAACACGA+AGG | + | chr2.4:75249790-75249809 | MS.gene071995:CDS | 40.0% | |
| AGAAGCTGATAACTAATGGC+GGG | + | chr2.4:75250649-75250668 | MS.gene071995:intron | 40.0% | |
| AGAGTGATCAGTTAACTGTG+GGG | - | chr2.4:75251229-75251248 | None:intergenic | 40.0% | |
| ATTAAAGCAAGTCCAGTGAC+AGG | - | chr2.4:75251660-75251679 | None:intergenic | 40.0% | |
| CAAACAGTAAAACACACTGC+TGG | + | chr2.4:75251096-75251115 | MS.gene071995:CDS | 40.0% | |
| CAACACAGAAGATTAATCGC+AGG | - | chr2.4:75249603-75249622 | None:intergenic | 40.0% | |
| CACGGAGAAATCTTGCTAAT+GGG | + | chr2.4:75251732-75251751 | MS.gene071995:CDS | 40.0% | |
| CAGAGTGATCAGTTAACTGT+GGG | - | chr2.4:75251230-75251249 | None:intergenic | 40.0% | |
| CGAGGAGAGATCCAAAAAAT+TGG | + | chr2.4:75251488-75251507 | MS.gene071995:CDS | 40.0% | |
| CTAGTTACTCTTAACACAGG+TGG | + | chr2.4:75249886-75249905 | MS.gene071995:intron | 40.0% | |
| CTCTACCCAGACATAAAAAG+TGG | + | chr2.4:75249855-75249874 | MS.gene071995:intron | 40.0% | |
| CTTGACTCCATGAGAAACAT+CGG | - | chr2.4:75251457-75251476 | None:intergenic | 40.0% | |
| GAGATCTTAAAGTTTCCTGG+TGG | + | chr2.4:75250100-75250119 | MS.gene071995:CDS | 40.0% | |
| GATACTTCACGGTCAAAACA+AGG | - | chr2.4:75251318-75251337 | None:intergenic | 40.0% | |
| GCTGTATTCGATTGGATTTG+AGG | + | chr2.4:75248029-75248048 | MS.gene071995:intron | 40.0% | |
| GGCCGAAAACTACGTTATTA+AGG | - | chr2.4:75251134-75251153 | None:intergenic | 40.0% | |
| GGGGATATAGGAGAATAAGA+GGG | - | chr2.4:75251279-75251298 | None:intergenic | 40.0% | |
| GTAGAAAATGGCAATGCATC+TGG | - | chr2.4:75250741-75250760 | None:intergenic | 40.0% | |
| GTGCAAATAACAAATGCACG+CGG | + | chr2.4:75250985-75251004 | MS.gene071995:CDS | 40.0% | |
| GTTATCCAGGACTTCAGATA+TGG | - | chr2.4:75250203-75250222 | None:intergenic | 40.0% | |
| TATGATATAGGGGAATCAGC+AGG | - | chr2.4:75251387-75251406 | None:intergenic | 40.0% | |
| TCAGAGTGATCAGTTAACTG+TGG | - | chr2.4:75251231-75251250 | None:intergenic | 40.0% | |
| TGATGTTGTTACAGTCAGGT+AGG | - | chr2.4:75250056-75250075 | None:intergenic | 40.0% | |
| TGCACATACACATTCTGCAA+TGG | - | chr2.4:75250970-75250989 | None:intergenic | 40.0% | |
| TGGGGATATAGGAGAATAAG+AGG | - | chr2.4:75251280-75251299 | None:intergenic | 40.0% | |
| TTGGCTAATACCTTCGTGTT+TGG | - | chr2.4:75249803-75249822 | None:intergenic | 40.0% | |
| ! | AATTGGTCTGACGTGGTATT+TGG | + | chr2.4:75249941-75249960 | MS.gene071995:CDS | 40.0% |
| ! | ATTGCATCTGAAGTCTGATG+AGG | + | chr2.4:75250255-75250274 | MS.gene071995:CDS | 40.0% |
| ! | CAACACTTTTGTGGATGGAT+AGG | - | chr2.4:75249916-75249935 | None:intergenic | 40.0% |
| ! | GAATAAGAGGGAGCATGATA+TGG | - | chr2.4:75251267-75251286 | None:intergenic | 40.0% |
| ! | GGGTCTCTGGCAATATTTTA+GGG | + | chr2.4:75250669-75250688 | MS.gene071995:intron | 40.0% |
| ! | TCATTCCATATCTGAAGTCC+TGG | + | chr2.4:75250195-75250214 | MS.gene071995:CDS | 40.0% |
| !! | AGTCATTGTTGACTTGCTGT+TGG | + | chr2.4:75248534-75248553 | MS.gene071995:intron | 40.0% |
| !! | ATCTGTGATGAAGCATTGTC+AGG | - | chr2.4:75249277-75249296 | None:intergenic | 40.0% |
| !! | TTAGGGTGTACCTTTTTGAG+TGG | + | chr2.4:75250686-75250705 | MS.gene071995:intron | 40.0% |
| !!! | TAGGGTGTACCTTTTTGAGT+GGG | + | chr2.4:75250687-75250706 | MS.gene071995:intron | 40.0% |
| ATACTTCCAGCCACACAACT+CGG | + | chr2.4:75251406-75251425 | MS.gene071995:CDS | 45.0% | |
| CACACTGCTGGAAACAATCT+TGG | + | chr2.4:75251108-75251127 | MS.gene071995:CDS | 45.0% | |
| CACATAGAAACAGACTGCAC+TGG | - | chr2.4:75250139-75250158 | None:intergenic | 45.0% | |
| CATGAGCTGAAAATTGGTCG+AGG | - | chr2.4:75249688-75249707 | None:intergenic | 45.0% | |
| CCACGGAGAAATCTTGCTAA+TGG | + | chr2.4:75251731-75251750 | MS.gene071995:CDS | 45.0% | |
| CCATTAGCAAGATTTCTCCG+TGG | - | chr2.4:75251734-75251753 | None:intergenic | 45.0% | |
| CTCATGTTCAAGCATCCTTC+AGG | + | chr2.4:75249702-75249721 | MS.gene071995:CDS | 45.0% | |
| GAACAGAGGCAAAACGATGA+AGG | + | chr2.4:75247757-75247776 | MS.gene071995:CDS | 45.0% | |
| GAACGTTCATTGGATCAGAG+AGG | - | chr2.4:75249970-75249989 | None:intergenic | 45.0% | |
| GAATCAGCAGGAGAATAAGC+TGG | - | chr2.4:75251375-75251394 | None:intergenic | 45.0% | |
| GTGAAGGTGAGGATACTTCA+CGG | - | chr2.4:75251329-75251348 | None:intergenic | 45.0% | |
| TGATCAGTTAACTGTGGGGA+TGG | - | chr2.4:75251225-75251244 | None:intergenic | 45.0% | |
| TTACAGTCAGGTAGGTTTGC+TGG | - | chr2.4:75250048-75250067 | None:intergenic | 45.0% | |
| TTAGCAGTTGCTGGGGATAT+AGG | - | chr2.4:75251291-75251310 | None:intergenic | 45.0% | |
| TTCAGCACACTCAAGTACAC+TGG | - | chr2.4:75250001-75250020 | None:intergenic | 45.0% | |
| TTCTATGTGGCAGATACGTG+AGG | + | chr2.4:75250150-75250169 | MS.gene071995:CDS | 45.0% | |
| ! | AAGGTGTCTTAGCAGTTGCT+GGG | - | chr2.4:75251299-75251318 | None:intergenic | 45.0% |
| ! | AGGTGCAACACTTTTGTGGA+TGG | - | chr2.4:75249921-75249940 | None:intergenic | 45.0% |
| ! | CGGGTCTCTGGCAATATTTT+AGG | + | chr2.4:75250668-75250687 | MS.gene071995:intron | 45.0% |
| ! | TTTTGGATCTCTCCTCGTCT+TGG | - | chr2.4:75251485-75251504 | None:intergenic | 45.0% |
| !! | CAGTGCAGTCTGTTTCTATG+TGG | + | chr2.4:75250137-75250156 | MS.gene071995:CDS | 45.0% |
| !! | TGACTTGCTGTTGGACTCTT+CGG | + | chr2.4:75248543-75248562 | MS.gene071995:intron | 45.0% |
| !!! | AACTGGTTTTTCCAGCCTGA+AGG | - | chr2.4:75249720-75249739 | None:intergenic | 45.0% |
| ACGCGCAACAAGAAGAACAG+AGG | + | chr2.4:75247743-75247762 | MS.gene071995:CDS | 50.0% | |
| ACTGAAGCCTGCACTACTAC+AGG | - | chr2.4:75251027-75251046 | None:intergenic | 50.0% | |
| AGCTTGTCCTGTAGTAGTGC+AGG | + | chr2.4:75251017-75251036 | MS.gene071995:CDS | 50.0% | |
| AGGTGTCTTAGCAGTTGCTG+GGG | - | chr2.4:75251298-75251317 | None:intergenic | 50.0% | |
| ATTCATCGAGCTCCTGTCAC+TGG | + | chr2.4:75251645-75251664 | MS.gene071995:intron | 50.0% | |
| GCATCGGATGCGCGTAATTA+GGG | + | chr2.4:75248379-75248398 | MS.gene071995:intron | 50.0% | |
| GGATGCTCAGTCACAATGGA+CGG | - | chr2.4:75251351-75251370 | None:intergenic | 50.0% | |
| GGTATTACAGTCAACCCACC+AGG | - | chr2.4:75250118-75250137 | None:intergenic | 50.0% | |
| TACTTCCAGCCACACAACTC+GGG | + | chr2.4:75251407-75251426 | MS.gene071995:CDS | 50.0% | |
| TCAGCAGGAGAATAAGCTGG+AGG | - | chr2.4:75251372-75251391 | None:intergenic | 50.0% | |
| TCAGTCACAATGGACGGTGA+AGG | - | chr2.4:75251345-75251364 | None:intergenic | 50.0% | |
| TCGGCCAAGTCAGAGAAATC+AGG | + | chr2.4:75251148-75251167 | MS.gene071995:CDS | 50.0% | |
| TGGAGGATGCTCAGTCACAA+TGG | - | chr2.4:75251355-75251374 | None:intergenic | 50.0% | |
| TGTTCAAGCATCCTTCAGGC+TGG | + | chr2.4:75249706-75249725 | MS.gene071995:CDS | 50.0% | |
| ! | AGCATCGGATGCGCGTAATT+AGG | + | chr2.4:75248378-75248397 | MS.gene071995:intron | 50.0% |
| ! | CAAGGTGTCTTAGCAGTTGC+TGG | - | chr2.4:75251300-75251319 | None:intergenic | 50.0% |
| ! | GGCAAAACGATGAAGGTGCA+CGG | + | chr2.4:75247764-75247783 | MS.gene071995:CDS | 50.0% |
| ! | GTAAGAGGAGCGTGCAAAAC+TGG | + | chr2.4:75248608-75248627 | MS.gene071995:intron | 50.0% |
| ! | TGCACCTAATTGGTCTGACG+TGG | + | chr2.4:75249934-75249953 | MS.gene071995:CDS | 50.0% |
| !! | GATAACTAATGGCGGGTCTC+TGG | + | chr2.4:75250656-75250675 | MS.gene071995:intron | 50.0% |
| !! | GGTAGGTTTGCTGGAGAAAC+AGG | - | chr2.4:75250039-75250058 | None:intergenic | 50.0% |
| AGAAACCCGAGTTGTGTGGC+TGG | - | chr2.4:75251415-75251434 | None:intergenic | 55.0% | |
| AGTCAAGCTTCGCCAAGACG+AGG | + | chr2.4:75251470-75251489 | MS.gene071995:CDS | 55.0% | |
| CACAATGGACGGTGAAGGTG+AGG | - | chr2.4:75251340-75251359 | None:intergenic | 55.0% | |
| CAGGAGAAACCCGAGTTGTG+TGG | - | chr2.4:75251419-75251438 | None:intergenic | 55.0% | |
| CGTGCAGCCGATGTTTCTCA+TGG | + | chr2.4:75251447-75251466 | MS.gene071995:CDS | 55.0% | |
| GTTAACTGTGGGGATGGAGC+AGG | - | chr2.4:75251219-75251238 | None:intergenic | 55.0% | |
| TGCAGGCTTCAGTCATGCGA+GGG | + | chr2.4:75251034-75251053 | MS.gene071995:CDS | 55.0% | |
| TGTCTGGGTAGAGAGACCTG+AGG | - | chr2.4:75249848-75249867 | None:intergenic | 55.0% | |
| ! | CGATGAAGGTGCACGGTGTT+CGG | + | chr2.4:75247771-75247790 | MS.gene071995:CDS | 55.0% |
| ! | TGAGAAACATCGGCTGCACG+TGG | - | chr2.4:75251447-75251466 | None:intergenic | 55.0% |
| GTGCAGGCTTCAGTCATGCG+AGG | + | chr2.4:75251033-75251052 | MS.gene071995:CDS | 60.0% | |
| TCGGCTGCACGTGGCAGATC+AGG | - | chr2.4:75251438-75251457 | None:intergenic | 65.0% | |
| TGTGGGGATGGAGCAGGAGC+TGG | - | chr2.4:75251213-75251232 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 75247715 | 75251791 | 75247715 | ID=MS.gene071995 |
| chr2.4 | mRNA | 75247715 | 75251791 | 75247715 | ID=MS.gene071995.t1;Parent=MS.gene071995 |
| chr2.4 | exon | 75247715 | 75247934 | 75247715 | ID=MS.gene071995.t1.exon1;Parent=MS.gene071995.t1 |
| chr2.4 | CDS | 75247715 | 75247934 | 75247715 | ID=cds.MS.gene071995.t1;Parent=MS.gene071995.t1 |
| chr2.4 | exon | 75249702 | 75249811 | 75249702 | ID=MS.gene071995.t1.exon2;Parent=MS.gene071995.t1 |
| chr2.4 | CDS | 75249702 | 75249811 | 75249702 | ID=cds.MS.gene071995.t1;Parent=MS.gene071995.t1 |
| chr2.4 | exon | 75249905 | 75250276 | 75249905 | ID=MS.gene071995.t1.exon3;Parent=MS.gene071995.t1 |
| chr2.4 | CDS | 75249905 | 75250276 | 75249905 | ID=cds.MS.gene071995.t1;Parent=MS.gene071995.t1 |
| chr2.4 | exon | 75250976 | 75251540 | 75250976 | ID=MS.gene071995.t1.exon4;Parent=MS.gene071995.t1 |
| chr2.4 | CDS | 75250976 | 75251540 | 75250976 | ID=cds.MS.gene071995.t1;Parent=MS.gene071995.t1 |
| chr2.4 | exon | 75251712 | 75251791 | 75251712 | ID=MS.gene071995.t1.exon5;Parent=MS.gene071995.t1 |
| chr2.4 | CDS | 75251712 | 75251791 | 75251712 | ID=cds.MS.gene071995.t1;Parent=MS.gene071995.t1 |
| Gene Sequence |
| Protein sequence |
