Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07215.t1 | XP_003591531.2 | 97.9 | 951 | 20 | 0 | 1 | 951 | 72 | 1022 | 0.00E+00 | 1850.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07215.t1 | O22243 | 59.1 | 950 | 381 | 7 | 1 | 946 | 68 | 1013 | 0.0e+00 | 1112.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07215.t1 | G7IF63 | 97.9 | 951 | 20 | 0 | 1 | 951 | 72 | 1022 | 0.0e+00 | 1850.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene07215 | 0.832412 | 9.59E-56 | -1.69E-46 |
MS.gene056228 | MS.gene07215 | 0.861628 | 8.98E-64 | -1.69E-46 |
MS.gene059154 | MS.gene07215 | 0.810223 | 1.28E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07215.t1 | MTR_1g088590 | 97.792 | 951 | 21 | 0 | 1 | 951 | 72 | 1022 | 0.0 | 1946 |
MS.gene07215.t1 | MTR_0267s0070 | 31.982 | 444 | 260 | 10 | 4 | 445 | 967 | 1370 | 5.61e-45 | 177 |
MS.gene07215.t1 | MTR_3g014030 | 32.207 | 444 | 257 | 11 | 4 | 445 | 314 | 715 | 5.67e-45 | 177 |
MS.gene07215.t1 | MTR_1g023985 | 31.360 | 456 | 247 | 14 | 4 | 447 | 618 | 1019 | 1.86e-40 | 162 |
MS.gene07215.t1 | MTR_3g086770 | 30.599 | 451 | 256 | 12 | 4 | 445 | 314 | 716 | 3.33e-40 | 162 |
MS.gene07215.t1 | MTR_8g080240 | 30.193 | 467 | 244 | 15 | 4 | 448 | 49 | 455 | 4.22e-39 | 154 |
MS.gene07215.t1 | MTR_8g080240 | 30.603 | 464 | 246 | 14 | 4 | 448 | 49 | 455 | 4.81e-39 | 155 |
MS.gene07215.t1 | MTR_8g080240 | 30.603 | 464 | 246 | 14 | 4 | 448 | 49 | 455 | 5.43e-39 | 155 |
MS.gene07215.t1 | MTR_1g114490 | 30.937 | 459 | 245 | 15 | 4 | 447 | 549 | 950 | 7.88e-39 | 157 |
MS.gene07215.t1 | MTR_8g106630 | 28.571 | 434 | 262 | 12 | 4 | 398 | 325 | 749 | 3.30e-38 | 155 |
MS.gene07215.t1 | MTR_1g056490 | 30.369 | 461 | 266 | 14 | 4 | 427 | 283 | 725 | 9.77e-36 | 147 |
MS.gene07215.t1 | MTR_3g052610 | 27.883 | 477 | 284 | 12 | 4 | 466 | 134 | 564 | 1.84e-35 | 145 |
MS.gene07215.t1 | MTR_4g485610 | 31.220 | 410 | 218 | 14 | 4 | 396 | 73 | 435 | 2.53e-35 | 144 |
MS.gene07215.t1 | MTR_1g109170 | 29.234 | 431 | 261 | 12 | 4 | 398 | 381 | 803 | 6.72e-35 | 144 |
MS.gene07215.t1 | MTR_1g109170 | 29.545 | 440 | 263 | 13 | 4 | 404 | 381 | 812 | 7.74e-35 | 144 |
MS.gene07215.t1 | MTR_6g061840 | 29.108 | 426 | 240 | 11 | 4 | 418 | 303 | 677 | 3.62e-34 | 141 |
MS.gene07215.t1 | MTR_6g061840 | 29.108 | 426 | 240 | 11 | 4 | 418 | 303 | 677 | 6.20e-34 | 141 |
MS.gene07215.t1 | MTR_2g015320 | 29.703 | 404 | 243 | 13 | 4 | 396 | 102 | 475 | 3.68e-32 | 134 |
MS.gene07215.t1 | MTR_4g134790 | 26.714 | 569 | 325 | 19 | 4 | 501 | 657 | 1204 | 2.35e-31 | 133 |
MS.gene07215.t1 | MTR_4g134790 | 26.573 | 572 | 325 | 19 | 4 | 501 | 657 | 1207 | 1.05e-30 | 131 |
MS.gene07215.t1 | MTR_5g075310 | 30.667 | 375 | 204 | 11 | 4 | 366 | 258 | 588 | 1.43e-30 | 130 |
MS.gene07215.t1 | MTR_3g023880 | 30.913 | 427 | 229 | 13 | 4 | 418 | 460 | 832 | 1.45e-30 | 130 |
MS.gene07215.t1 | MTR_7g095080 | 28.636 | 440 | 216 | 15 | 7 | 395 | 100 | 492 | 4.84e-28 | 121 |
MS.gene07215.t1 | MTR_3g054400 | 26.846 | 447 | 279 | 12 | 4 | 445 | 416 | 819 | 9.21e-28 | 121 |
MS.gene07215.t1 | MTR_2g098440 | 27.020 | 396 | 248 | 8 | 4 | 395 | 619 | 977 | 5.88e-27 | 119 |
MS.gene07215.t1 | MTR_6g061840 | 27.692 | 325 | 182 | 8 | 4 | 318 | 303 | 584 | 5.92e-21 | 98.6 |
MS.gene07215.t1 | MTR_8g045110 | 29.817 | 218 | 136 | 6 | 189 | 397 | 101 | 310 | 2.54e-20 | 96.7 |
MS.gene07215.t1 | MTR_1g086640 | 40.678 | 118 | 69 | 1 | 4 | 121 | 111 | 227 | 1.66e-17 | 88.2 |
MS.gene07215.t1 | MTR_1g086640 | 37.589 | 141 | 82 | 3 | 257 | 396 | 338 | 473 | 1.65e-15 | 81.6 |
MS.gene07215.t1 | MTR_8g463810 | 97.222 | 36 | 1 | 0 | 465 | 500 | 130 | 165 | 6.51e-17 | 84.7 |
MS.gene07215.t1 | MTR_5g090430 | 31.174 | 247 | 145 | 8 | 170 | 400 | 515 | 752 | 1.88e-16 | 85.1 |
MS.gene07215.t1 | MTR_5g090430 | 38.281 | 128 | 69 | 2 | 4 | 121 | 237 | 364 | 4.07e-14 | 77.4 |
MS.gene07215.t1 | MTR_5g090430 | 31.174 | 247 | 145 | 8 | 170 | 400 | 402 | 639 | 2.13e-16 | 84.7 |
MS.gene07215.t1 | MTR_5g090430 | 38.281 | 128 | 69 | 2 | 4 | 121 | 124 | 251 | 4.22e-14 | 77.4 |
MS.gene07215.t1 | MTR_8g044260 | 31.336 | 217 | 134 | 6 | 189 | 397 | 514 | 723 | 5.14e-14 | 77.0 |
MS.gene07215.t1 | MTR_8g044260 | 32.773 | 119 | 77 | 2 | 4 | 121 | 301 | 417 | 3.90e-11 | 67.8 |
MS.gene07215.t1 | MTR_4g120070 | 38.554 | 83 | 51 | 0 | 252 | 334 | 639 | 721 | 1.25e-12 | 72.8 |
MS.gene07215.t1 | MTR_4g023590 | 38.554 | 83 | 51 | 0 | 252 | 334 | 713 | 795 | 1.25e-12 | 72.8 |
MS.gene07215.t1 | MTR_4g023590 | 41.379 | 87 | 50 | 1 | 4 | 90 | 326 | 411 | 3.26e-11 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07215.t1 | AT2G47680 | 60.421 | 950 | 368 | 7 | 1 | 946 | 68 | 1013 | 0.0 | 1121 |
MS.gene07215.t1 | AT2G35920 | 28.516 | 512 | 299 | 16 | 4 | 472 | 312 | 799 | 1.10e-39 | 159 |
MS.gene07215.t1 | AT2G35920 | 28.516 | 512 | 299 | 16 | 4 | 472 | 280 | 767 | 1.12e-39 | 159 |
MS.gene07215.t1 | AT2G35920 | 28.516 | 512 | 299 | 16 | 4 | 472 | 222 | 709 | 1.22e-39 | 159 |
MS.gene07215.t1 | AT3G26560 | 31.057 | 454 | 251 | 15 | 4 | 447 | 563 | 964 | 1.99e-39 | 159 |
MS.gene07215.t1 | AT2G01130 | 29.386 | 456 | 247 | 14 | 2 | 404 | 205 | 638 | 2.17e-38 | 155 |
MS.gene07215.t1 | AT2G01130 | 29.515 | 454 | 245 | 14 | 4 | 404 | 272 | 703 | 2.76e-38 | 155 |
MS.gene07215.t1 | AT1G27900 | 29.221 | 462 | 255 | 14 | 4 | 448 | 52 | 458 | 4.96e-36 | 144 |
MS.gene07215.t1 | AT3G62310 | 28.367 | 490 | 277 | 14 | 6 | 478 | 117 | 549 | 5.96e-36 | 145 |
MS.gene07215.t1 | AT1G27900 | 29.221 | 462 | 255 | 14 | 4 | 448 | 52 | 458 | 6.24e-36 | 144 |
MS.gene07215.t1 | AT2G35340 | 31.059 | 425 | 231 | 13 | 4 | 418 | 314 | 686 | 7.01e-36 | 147 |
MS.gene07215.t1 | AT2G35340 | 31.059 | 425 | 231 | 13 | 4 | 418 | 452 | 824 | 1.05e-35 | 147 |
MS.gene07215.t1 | AT3G62310 | 30.392 | 408 | 220 | 11 | 6 | 396 | 117 | 477 | 2.44e-35 | 142 |
MS.gene07215.t1 | AT1G27900 | 29.437 | 462 | 254 | 15 | 4 | 448 | 52 | 458 | 3.18e-35 | 144 |
MS.gene07215.t1 | AT4G01020 | 29.047 | 451 | 262 | 10 | 4 | 445 | 351 | 752 | 6.70e-35 | 145 |
MS.gene07215.t1 | AT2G47250 | 29.613 | 439 | 240 | 14 | 6 | 427 | 121 | 507 | 1.79e-34 | 142 |
MS.gene07215.t1 | AT3G62310 | 30.637 | 408 | 219 | 12 | 6 | 396 | 117 | 477 | 2.36e-34 | 141 |
MS.gene07215.t1 | AT5G10370 | 29.047 | 451 | 262 | 10 | 4 | 445 | 354 | 755 | 2.77e-34 | 143 |
MS.gene07215.t1 | AT1G32490 | 30.353 | 425 | 234 | 13 | 4 | 418 | 442 | 814 | 3.36e-34 | 142 |
MS.gene07215.t1 | AT1G32490 | 30.353 | 425 | 234 | 13 | 4 | 418 | 452 | 824 | 3.71e-34 | 142 |
MS.gene07215.t1 | AT4G18465 | 28.817 | 465 | 278 | 12 | 4 | 453 | 97 | 523 | 1.03e-33 | 139 |
MS.gene07215.t1 | AT1G58060 | 28.462 | 520 | 292 | 18 | 4 | 460 | 666 | 1168 | 1.78e-33 | 140 |
MS.gene07215.t1 | AT1G58050 | 28.261 | 552 | 323 | 20 | 4 | 501 | 649 | 1181 | 2.72e-33 | 139 |
MS.gene07215.t1 | AT1G48650 | 28.009 | 432 | 262 | 12 | 4 | 396 | 351 | 772 | 5.08e-32 | 135 |
MS.gene07215.t1 | AT1G48650 | 28.009 | 432 | 262 | 12 | 4 | 396 | 351 | 772 | 5.14e-32 | 135 |
MS.gene07215.t1 | AT4G16680 | 30.340 | 412 | 210 | 13 | 4 | 397 | 263 | 615 | 2.27e-30 | 128 |
MS.gene07215.t1 | AT4G16680 | 30.340 | 412 | 210 | 13 | 4 | 397 | 183 | 535 | 3.37e-30 | 129 |
MS.gene07215.t1 | AT5G04895 | 26.207 | 435 | 268 | 12 | 4 | 397 | 312 | 734 | 2.10e-29 | 127 |
MS.gene07215.t1 | AT1G26370 | 28.864 | 440 | 220 | 12 | 4 | 395 | 90 | 484 | 2.14e-27 | 119 |
MS.gene07215.t1 | AT5G13010 | 27.340 | 406 | 234 | 13 | 4 | 395 | 606 | 964 | 8.53e-27 | 119 |
MS.gene07215.t1 | AT1G06670 | 30.794 | 315 | 163 | 11 | 207 | 496 | 577 | 861 | 4.91e-21 | 100 |
MS.gene07215.t1 | AT1G06670 | 37.500 | 120 | 73 | 1 | 4 | 121 | 268 | 387 | 4.42e-16 | 84.0 |
MS.gene07215.t1 | AT1G06670 | 30.794 | 315 | 163 | 11 | 207 | 496 | 577 | 861 | 5.03e-21 | 100 |
MS.gene07215.t1 | AT1G06670 | 37.500 | 120 | 73 | 1 | 4 | 121 | 268 | 387 | 4.22e-16 | 84.3 |
MS.gene07215.t1 | AT2G30800 | 36.530 | 219 | 119 | 8 | 188 | 395 | 193 | 402 | 2.12e-20 | 97.8 |
MS.gene07215.t1 | AT2G30800 | 36.530 | 219 | 119 | 8 | 188 | 395 | 536 | 745 | 2.42e-20 | 97.8 |
MS.gene07215.t1 | AT2G30800 | 36.667 | 120 | 74 | 1 | 4 | 121 | 238 | 357 | 1.78e-15 | 82.0 |
MS.gene07215.t1 | AT1G33390 | 32.447 | 188 | 114 | 5 | 251 | 437 | 667 | 842 | 1.45e-16 | 85.5 |
MS.gene07215.t1 | AT1G33390 | 43.678 | 87 | 48 | 1 | 4 | 90 | 295 | 380 | 5.82e-12 | 70.5 |
MS.gene07215.t1 | AT1G33390 | 32.447 | 188 | 114 | 5 | 251 | 437 | 667 | 842 | 1.45e-16 | 85.5 |
MS.gene07215.t1 | AT1G33390 | 43.678 | 87 | 48 | 1 | 4 | 90 | 295 | 380 | 5.82e-12 | 70.5 |
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTTAGCCTTTCGAATTT+TGG | 0.126555 | 1.4:-70306380 | MS.gene07215:CDS |
ACTGGTAGTTGAAATTATTT+TGG | 0.145472 | 1.4:+70306609 | None:intergenic |
CAAGATATAGGGACTACTTT+AGG | 0.168914 | 1.4:-70310411 | MS.gene07215:CDS |
AAGTACATTGATTACTATTA+TGG | 0.215476 | 1.4:-70308175 | MS.gene07215:CDS |
TCGAGCTTTCGCAACCATTT+TGG | 0.227064 | 1.4:+70312814 | None:intergenic |
AATTGATCTGTTGCTAGATT+TGG | 0.234588 | 1.4:+70306693 | None:intergenic |
TTCATGTTGTGCTGGATCTA+AGG | 0.281575 | 1.4:-70308890 | MS.gene07215:CDS |
AAGATATAGGGACTACTTTA+GGG | 0.284758 | 1.4:-70310410 | MS.gene07215:CDS |
GTACCGGCTTGAACATTTAA+AGG | 0.289189 | 1.4:-70307799 | MS.gene07215:CDS |
TCTCCAAATGGGTGAATAAT+AGG | 0.292424 | 1.4:+70308321 | None:intergenic |
CTGCCTTGGCTATGATTGTT+TGG | 0.296627 | 1.4:+70306515 | None:intergenic |
GCCGATCATTACAAGTCTAT+TGG | 0.299966 | 1.4:-70309181 | MS.gene07215:CDS |
TTTGCAGAACCATCCCTTAC+AGG | 0.301730 | 1.4:-70306571 | MS.gene07215:CDS |
CATTTGTTTGTTTCACTTGA+TGG | 0.303202 | 1.4:+70307345 | None:intergenic |
TGTCGTTTCTGTTGCCAAAA+TGG | 0.311019 | 1.4:-70312828 | MS.gene07215:CDS |
TTGGGATAAGTCCCGGAAAA+AGG | 0.313356 | 1.4:-70309162 | MS.gene07215:CDS |
CCTAGGCAGAGTGCACAAAA+TGG | 0.316736 | 1.4:+70312859 | None:intergenic |
CTTACCTTTGGGATCATTGA+TGG | 0.318772 | 1.4:+70308867 | None:intergenic |
AATGATAATTTAAGAATAAC+TGG | 0.319252 | 1.4:+70308931 | None:intergenic |
CTCTCATGACTATGAAGATT+TGG | 0.320748 | 1.4:-70309710 | MS.gene07215:CDS |
GCGATGATTGGTAGAGATTA+TGG | 0.321748 | 1.4:+70307703 | None:intergenic |
AAGTTCATAAGGATCATAAT+AGG | 0.324019 | 1.4:+70307443 | None:intergenic |
AGGACTGTTCAGCACTTGTT+TGG | 0.325410 | 1.4:-70309142 | MS.gene07215:CDS |
CAACAGATCAATTCTGATAT+TGG | 0.332415 | 1.4:-70306683 | MS.gene07215:CDS |
TCTGTTCTAGTCCTCAAGTT+TGG | 0.332431 | 1.4:-70308405 | MS.gene07215:CDS |
TTACCTATTATTCACCCATT+TGG | 0.332683 | 1.4:-70308324 | MS.gene07215:CDS |
CTGCTGATATTTCAAGATAT+AGG | 0.337542 | 1.4:-70310423 | MS.gene07215:CDS |
GGAAAATCTGATATTATTCA+TGG | 0.341076 | 1.4:+70306324 | None:intergenic |
ATTGATCTGTTGCTAGATTT+GGG | 0.342650 | 1.4:+70306694 | None:intergenic |
CGATAGCTATGGTGAGGATT+TGG | 0.342905 | 1.4:-70306437 | MS.gene07215:CDS |
TGTCAATTGGGAGGAGAAGT+TGG | 0.347727 | 1.4:-70312788 | MS.gene07215:CDS |
CTTAATGTATGCATTGGATA+TGG | 0.355039 | 1.4:+70309920 | None:intergenic |
TGCTTAAGCTTGAGGAAGAT+TGG | 0.362726 | 1.4:-70307734 | MS.gene07215:CDS |
CTTGTGATGGCCAAGTTTAT+AGG | 0.366960 | 1.4:-70308999 | MS.gene07215:CDS |
CAAGTTTATAGGTTGGTTCC+TGG | 0.367321 | 1.4:-70308988 | MS.gene07215:CDS |
TGCTGATATTTCAAGATATA+GGG | 0.375273 | 1.4:-70310422 | MS.gene07215:CDS |
CCCATTTGGAGAGGATGAAT+TGG | 0.376013 | 1.4:-70308310 | MS.gene07215:intron |
GATACGTGAGGGCATCTTGC+TGG | 0.381791 | 1.4:-70308370 | MS.gene07215:CDS |
TGCTGTCTGTCAGGTAATAT+TGG | 0.382787 | 1.4:-70309264 | MS.gene07215:intron |
AGGGACTACTTTAGGGATCT+TGG | 0.382996 | 1.4:-70310403 | MS.gene07215:CDS |
ATTCTTTCTTCATGTTGTGC+TGG | 0.393692 | 1.4:-70308898 | MS.gene07215:CDS |
ATAAAATTCTGACTCCTGTA+AGG | 0.398019 | 1.4:+70306557 | None:intergenic |
TTATAATAGGGTTGCCGAAA+TGG | 0.399187 | 1.4:-70306829 | MS.gene07215:intron |
GAAAGCTCGAAATTGTCAAT+TGG | 0.400900 | 1.4:-70312801 | MS.gene07215:CDS |
GGACTGTTCAGCACTTGTTT+GGG | 0.402841 | 1.4:-70309141 | MS.gene07215:CDS |
TCAATGACATAAGCCACTTT+AGG | 0.402853 | 1.4:+70309209 | None:intergenic |
CCGATCATTACAAGTCTATT+GGG | 0.404022 | 1.4:-70309180 | MS.gene07215:CDS |
AAATTCGAAAGGCTAAATAT+TGG | 0.407363 | 1.4:+70306383 | None:intergenic |
AATGCATCTTCAACAATTTG+AGG | 0.409582 | 1.4:+70308537 | None:intergenic |
TCACAGGTAGCTGAAACTCT+TGG | 0.411363 | 1.4:-70309993 | MS.gene07215:intron |
TCTTCAACAATTTGAGGATC+AGG | 0.414414 | 1.4:+70308543 | None:intergenic |
TAAATACAATCCATCGGTTC+CGG | 0.415135 | 1.4:-70307500 | MS.gene07215:CDS |
ACCAATTCATCCTCTCCAAA+TGG | 0.415417 | 1.4:+70308309 | None:intergenic |
TGTTTGGGTTTCCAAGTCTC+AGG | 0.416225 | 1.4:-70309126 | MS.gene07215:intron |
GTCAATTGGGAGGAGAAGTT+GGG | 0.416652 | 1.4:-70312787 | MS.gene07215:CDS |
CAGAAGGGATGCAGAATTCA+TGG | 0.417876 | 1.4:+70306726 | None:intergenic |
CACAGGTAGCTGAAACTCTT+GGG | 0.421495 | 1.4:-70309992 | MS.gene07215:intron |
GAATTCATGGCATTATCTTC+TGG | 0.423158 | 1.4:+70306739 | None:intergenic |
CCTCCGACTGACGAACTTTG+TGG | 0.430350 | 1.4:-70305685 | MS.gene07215:CDS |
ATAAACAAGATCCTCCATTT+CGG | 0.431328 | 1.4:+70306815 | None:intergenic |
GGATGGCTAGAAGAATCATC+TGG | 0.433498 | 1.4:+70307131 | None:intergenic |
TGTTAAAGAACAATGACTTA+AGG | 0.440206 | 1.4:-70310791 | MS.gene07215:intron |
CAGGGAGGAGTCTTATTCCT+TGG | 0.441454 | 1.4:-70306495 | MS.gene07215:CDS |
AAAGGTTGTTTCTGACAAAC+TGG | 0.442355 | 1.4:+70306591 | None:intergenic |
GTTTGCTGCAATTGTAAAAG+AGG | 0.445439 | 1.4:-70307265 | MS.gene07215:intron |
TTCAGACTTAATGTATGCAT+TGG | 0.447455 | 1.4:+70309914 | None:intergenic |
CATGTATGACTAAGTTCATA+AGG | 0.450959 | 1.4:+70307432 | None:intergenic |
CATAAAATGTAGGTTCATAT+CGG | 0.453848 | 1.4:+70308466 | None:intergenic |
CAAAAGCAAATGACTCTGTA+AGG | 0.460179 | 1.4:+70305800 | None:intergenic |
TCGAAAGGAGATGGAATTCA+TGG | 0.463093 | 1.4:-70308131 | MS.gene07215:CDS |
CAGAAGCAATCACCTGAAGT+TGG | 0.463291 | 1.4:+70306302 | None:intergenic |
TTGCTGCTCCAGTGAATAGT+AGG | 0.465469 | 1.4:+70309806 | None:intergenic |
CACAGAAGATTCAGCAATGT+TGG | 0.467771 | 1.4:+70309238 | None:intergenic |
ATTTGTTTGTTTCACTTGAT+GGG | 0.468946 | 1.4:+70307346 | None:intergenic |
CCTTCCAACCTACTATTCAC+TGG | 0.469761 | 1.4:-70309814 | MS.gene07215:CDS |
GCGGTTTCAGGTAGAGAAGT+TGG | 0.472801 | 1.4:-70305842 | MS.gene07215:intron |
TTCTGTGACAATACCTAAAG+TGG | 0.474995 | 1.4:-70309222 | MS.gene07215:CDS |
TTCGACCAGCTAAGATTGTC+CGG | 0.475272 | 1.4:+70308149 | None:intergenic |
AGAAGCAATCACCTGAAGTT+GGG | 0.475310 | 1.4:+70306303 | None:intergenic |
AAAATTTCGGCCGGAACCGA+TGG | 0.479863 | 1.4:+70307490 | None:intergenic |
CAGGAACCAACCTATAAACT+TGG | 0.479876 | 1.4:+70308989 | None:intergenic |
AAAGCTCGAAATTGTCAATT+GGG | 0.481267 | 1.4:-70312800 | MS.gene07215:CDS |
AAACAACGCAGTGGAAGAAC+TGG | 0.482099 | 1.4:-70309027 | MS.gene07215:CDS |
ACATGAATTGCCTCTGCTGC+AGG | 0.483684 | 1.4:+70307034 | None:intergenic |
AGTTCATAAGGATCATAATA+GGG | 0.484093 | 1.4:+70307444 | None:intergenic |
AAACTTGGCCATCACAAGTT+CGG | 0.485751 | 1.4:+70309004 | None:intergenic |
CACCACCATTGGCCGCCGAT+TGG | 0.488633 | 1.4:+70305741 | None:intergenic |
TTGGTAATTTCCACATCTAC+GGG | 0.488975 | 1.4:-70307091 | MS.gene07215:CDS |
GTTGGTAATTTCCACATCTA+CGG | 0.489833 | 1.4:-70307092 | MS.gene07215:CDS |
ACATCTGATGCAGCGATGAT+TGG | 0.492248 | 1.4:+70307691 | None:intergenic |
CTAGGCAGAGTGCACAAAAT+GGG | 0.492863 | 1.4:+70312860 | None:intergenic |
CATCTTGCTGGGTATTATGA+TGG | 0.496083 | 1.4:-70308358 | MS.gene07215:CDS |
GTTCGTCAGTCGGAGGCTGC+AGG | 0.497470 | 1.4:+70305692 | None:intergenic |
CCAATTCATCCTCTCCAAAT+GGG | 0.497672 | 1.4:+70308310 | None:intergenic |
TTTCCTTGCTTCGATAGCTA+TGG | 0.503522 | 1.4:-70306448 | MS.gene07215:CDS |
TGATGGCCAAGTTTATAGGT+TGG | 0.505826 | 1.4:-70308995 | MS.gene07215:CDS |
AAGTGATTCAAAGTAACATA+TGG | 0.506327 | 1.4:+70307312 | None:intergenic |
CTTAGCTGGTCGAAAGGAGA+TGG | 0.508658 | 1.4:-70308140 | MS.gene07215:CDS |
TTAAGCATAAGATGTGTGTC+AGG | 0.509544 | 1.4:+70307750 | None:intergenic |
AATAAGACTCCTCCCTGCCT+TGG | 0.512804 | 1.4:+70306501 | None:intergenic |
TTCATATGCAGGATAAGTAC+CGG | 0.514570 | 1.4:-70307815 | MS.gene07215:intron |
ATACATTGAATTTCATTCCA+AGG | 0.514609 | 1.4:+70306478 | None:intergenic |
TTGATTACTATTATGGTGAC+CGG | 0.515001 | 1.4:-70308168 | MS.gene07215:CDS |
GTCCTCAAGTTTGGAGACAT+TGG | 0.516012 | 1.4:-70308396 | MS.gene07215:CDS |
GATCATTTGTACCTGAGACT+TGG | 0.516721 | 1.4:+70309115 | None:intergenic |
TTACCAACGTCAGCATCCTC+TGG | 0.518373 | 1.4:+70307107 | None:intergenic |
TACTTTAGGGATCTTGGTAG+AGG | 0.519276 | 1.4:-70310397 | MS.gene07215:CDS |
TAAAACGGCTGGAGTGTTGT+TGG | 0.520740 | 1.4:-70310928 | MS.gene07215:CDS |
ACTACATCTGAATGTCCATC+TGG | 0.521032 | 1.4:+70307393 | None:intergenic |
GGTATCACATTGGACATTCA+CGG | 0.523702 | 1.4:-70312766 | MS.gene07215:CDS |
CAAACAATCATAGCCAAGGC+AGG | 0.523720 | 1.4:-70306514 | MS.gene07215:CDS |
AATGGGTGAATAATAGGTAA+AGG | 0.525093 | 1.4:+70308327 | None:intergenic |
GCACGCACTTATTCATGAGC+TGG | 0.525605 | 1.4:-70309889 | MS.gene07215:CDS |
TACCAATCGGCGGCCAATGG+TGG | 0.527331 | 1.4:-70305743 | MS.gene07215:CDS |
GAAACGACAGCAAATCTCCT+AGG | 0.528957 | 1.4:+70312842 | None:intergenic |
ATTGAGTTTACTTGTTCAGA+TGG | 0.530337 | 1.4:-70308517 | MS.gene07215:CDS |
AAGTCTATTGGGATAAGTCC+CGG | 0.532646 | 1.4:-70309169 | MS.gene07215:CDS |
TCATGGCATTATCTTCTGGC+AGG | 0.532822 | 1.4:+70306743 | None:intergenic |
TACATGACTCCGTTACCAAT+CGG | 0.535505 | 1.4:-70305756 | MS.gene07215:CDS |
ATGGACCTTGACACCACCAT+TGG | 0.536090 | 1.4:+70305730 | None:intergenic |
TTGAGGATCAGGTGGATCCA+TGG | 0.537539 | 1.4:+70308554 | None:intergenic |
AGTAATCGACCATAAAATGT+AGG | 0.538007 | 1.4:+70308456 | None:intergenic |
AGATCATTGTAAAACGATCC+AGG | 0.539044 | 1.4:+70308970 | None:intergenic |
ACTCTAAAAGTTGATTCAAG+TGG | 0.543179 | 1.4:+70309768 | None:intergenic |
CCCAATAGACTTGTAATGAT+CGG | 0.544563 | 1.4:+70309180 | None:intergenic |
ATACGTGAGGGCATCTTGCT+GGG | 0.544646 | 1.4:-70308369 | MS.gene07215:CDS |
CATTGGCCGCCGATTGGTAA+CGG | 0.546084 | 1.4:+70305747 | None:intergenic |
TTTAGAGTTCATATCTTACA+TGG | 0.547574 | 1.4:-70309753 | MS.gene07215:CDS |
AAGGATCATAATAGGGTACA+AGG | 0.549694 | 1.4:+70307451 | None:intergenic |
CACTAGAAAAGACACCTACC+AGG | 0.550220 | 1.4:-70308491 | MS.gene07215:CDS |
CGTTACCAATCGGCGGCCAA+TGG | 0.552065 | 1.4:-70305746 | MS.gene07215:CDS |
GGTTCATATCGGCCCCTGGT+AGG | 0.552108 | 1.4:+70308477 | None:intergenic |
ACATCTTATGCTTAAGCTTG+AGG | 0.552183 | 1.4:-70307742 | MS.gene07215:CDS |
ATTTGGGAAACAAATTCAGA+AGG | 0.552374 | 1.4:+70306710 | None:intergenic |
GGCGGCCAATGGTGGTGTCA+AGG | 0.554201 | 1.4:-70305735 | MS.gene07215:CDS |
CGTCAGCATCCTCTGGTGGA+TGG | 0.554430 | 1.4:+70307114 | None:intergenic |
TTTGGGAAACAAATTCAGAA+GGG | 0.558774 | 1.4:+70306711 | None:intergenic |
TTATTCTTAAATTATCATTG+AGG | 0.560296 | 1.4:-70308927 | MS.gene07215:CDS |
TTGAGTTTACTTGTTCAGAT+GGG | 0.562808 | 1.4:-70308516 | MS.gene07215:CDS |
TTGGCTATGATTGTTTGGTA+CGG | 0.565243 | 1.4:+70306520 | None:intergenic |
GAGAAACCTCCCCGTAGATG+TGG | 0.566194 | 1.4:+70307081 | None:intergenic |
GACAATCTTAGCTGGTCGAA+AGG | 0.567185 | 1.4:-70308146 | MS.gene07215:CDS |
AGCATGTTCTGATTTGAGCT+AGG | 0.570266 | 1.4:+70310349 | None:intergenic |
GGTGACCGGACAATCTTAGC+TGG | 0.571062 | 1.4:-70308154 | MS.gene07215:CDS |
CTTGACTGCACTGAAGTACA+AGG | 0.572504 | 1.4:-70310886 | MS.gene07215:CDS |
ATGTATGCATTGGATATGGA+AGG | 0.573027 | 1.4:+70309924 | None:intergenic |
TAAAATTCTGACTCCTGTAA+GGG | 0.573775 | 1.4:+70306558 | None:intergenic |
TTGCTTCGATAGCTATGGTG+AGG | 0.576690 | 1.4:-70306443 | MS.gene07215:CDS |
AGATGTAGTGTCTGTAGATG+AGG | 0.577366 | 1.4:-70307379 | MS.gene07215:CDS |
GATTTGGAAGTCACATCGAA+AGG | 0.577606 | 1.4:-70309694 | MS.gene07215:intron |
TCACTTGAACAGTTATGAAG+TGG | 0.581885 | 1.4:-70307295 | MS.gene07215:CDS |
TACCAATGTCTCCAAACTTG+AGG | 0.585864 | 1.4:+70308394 | None:intergenic |
TTGGATGAAATGCAAGAGAA+GGG | 0.586317 | 1.4:-70310909 | MS.gene07215:CDS |
CCTCCTTTAAATGTTCAAGC+CGG | 0.588311 | 1.4:+70307796 | None:intergenic |
TCAACAATTTGAGGATCAGG+TGG | 0.589362 | 1.4:+70308546 | None:intergenic |
ATAGGGTACAAGGCCATGAA+AGG | 0.590352 | 1.4:+70307461 | None:intergenic |
ACTATTCACTGGAGCAGCAA+TGG | 0.590566 | 1.4:-70309803 | MS.gene07215:CDS |
ATGCGTGGATCCTGCAGCAG+AGG | 0.591025 | 1.4:-70307044 | MS.gene07215:CDS |
CCAGTGAATAGTAGGTTGGA+AGG | 0.591221 | 1.4:+70309814 | None:intergenic |
CCTTGTGTATACTTCATGCG+TGG | 0.594073 | 1.4:-70307059 | MS.gene07215:CDS |
GGAGAAGTTGGGTATCACAT+TGG | 0.597913 | 1.4:-70312776 | MS.gene07215:CDS |
CAGGCTGAAGACATATGAGA+TGG | 0.600124 | 1.4:+70305711 | None:intergenic |
AAGTGTTTCATACATTGACC+AGG | 0.601286 | 1.4:-70310317 | MS.gene07215:intron |
TATTATTCACCCATTTGGAG+AGG | 0.602047 | 1.4:-70308319 | MS.gene07215:CDS |
TGTAGGTTCATATCGGCCCC+TGG | 0.602074 | 1.4:+70308473 | None:intergenic |
TACGGGCCGACACTGCTGGT+CGG | 0.603587 | 1.4:+70306776 | None:intergenic |
AGTGGACCGACCAGCAGTGT+CGG | 0.608232 | 1.4:-70306782 | MS.gene07215:CDS |
ATTCTGACTCCTGTAAGGGA+TGG | 0.609220 | 1.4:+70306562 | None:intergenic |
ATCATCAGCCAAAATTCGAA+AGG | 0.609839 | 1.4:+70306372 | None:intergenic |
TCATAATGAAGTCACCTGCA+AGG | 0.610502 | 1.4:+70306959 | None:intergenic |
CCAACGTCAGCATCCTCTGG+TGG | 0.610833 | 1.4:+70307110 | None:intergenic |
AGAACTGGCCGAACTTGTGA+TGG | 0.611540 | 1.4:-70309012 | MS.gene07215:CDS |
AAACAATCATAGCCAAGGCA+GGG | 0.614715 | 1.4:-70306513 | MS.gene07215:CDS |
TGTAAGGGATGGTTCTGCAA+AGG | 0.620161 | 1.4:+70306573 | None:intergenic |
TGCTCCAGTGAATAGTAGGT+TGG | 0.620773 | 1.4:+70309810 | None:intergenic |
GACATTGGTATGATACGTGA+GGG | 0.620945 | 1.4:-70308381 | MS.gene07215:CDS |
AGCTATGGTGAGGATTTGGA+TGG | 0.624808 | 1.4:-70306433 | MS.gene07215:CDS |
TCACCATAGCTATCGAAGCA+AGG | 0.625517 | 1.4:+70306445 | None:intergenic |
CGAAGTACATGAAAGATCAG+TGG | 0.629535 | 1.4:-70310850 | MS.gene07215:CDS |
ATATACTAAATACAATCCAT+CGG | 0.630552 | 1.4:-70307506 | MS.gene07215:CDS |
TAATAGGGTTGCCGAAATGG+AGG | 0.632252 | 1.4:-70306826 | MS.gene07215:intron |
CCGGCTTGAACATTTAAAGG+AGG | 0.633549 | 1.4:-70307796 | MS.gene07215:CDS |
GTTGGATGAAATGCAAGAGA+AGG | 0.638608 | 1.4:-70310910 | MS.gene07215:CDS |
GATGGCTAGAAGAATCATCT+GGG | 0.640973 | 1.4:+70307132 | None:intergenic |
CTGTTCAAAAGTCAGCCAGA+TGG | 0.645208 | 1.4:-70307408 | MS.gene07215:CDS |
TCACCACAAAGTTCGTCAGT+CGG | 0.646427 | 1.4:+70305682 | None:intergenic |
AAGGCCATCAATGATCCCAA+AGG | 0.650107 | 1.4:-70308871 | MS.gene07215:intron |
GTAGTGTCTGTAGATGAGGA+AGG | 0.651754 | 1.4:-70307375 | MS.gene07215:CDS |
GTACCAAACAATCATAGCCA+AGG | 0.653327 | 1.4:-70306518 | MS.gene07215:CDS |
TTCTTCTAGCCATCCACCAG+AGG | 0.654449 | 1.4:-70307123 | MS.gene07215:CDS |
CCACAAAGTTCGTCAGTCGG+AGG | 0.658589 | 1.4:+70305685 | None:intergenic |
GCTCGAAATTGTCAATTGGG+AGG | 0.661016 | 1.4:-70312797 | MS.gene07215:CDS |
TTTGGCTGATGATTTGCAGG+AGG | 0.661974 | 1.4:-70306362 | MS.gene07215:CDS |
CCACGCATGAAGTATACACA+AGG | 0.663114 | 1.4:+70307059 | None:intergenic |
CCACCAGAGGATGCTGACGT+TGG | 0.663996 | 1.4:-70307110 | MS.gene07215:CDS |
AGACATTGGTATGATACGTG+AGG | 0.664006 | 1.4:-70308382 | MS.gene07215:CDS |
TAATTTCCACATCTACGGGG+AGG | 0.667779 | 1.4:-70307087 | MS.gene07215:CDS |
ATGAAATTCAATGTATACTG+TGG | 0.676050 | 1.4:-70306471 | MS.gene07215:CDS |
ACTAGAAAAGACACCTACCA+GGG | 0.689256 | 1.4:-70308490 | MS.gene07215:CDS |
CAATCATAGCCAAGGCAGGG+AGG | 0.691338 | 1.4:-70306510 | MS.gene07215:CDS |
ATGACTCCGTTACCAATCGG+CGG | 0.701852 | 1.4:-70305753 | MS.gene07215:CDS |
ATAGTGGCAAGCAAAGCATG+AGG | 0.714126 | 1.4:+70306639 | None:intergenic |
TTGTAGGCGAAACAACGCAG+TGG | 0.715918 | 1.4:-70309036 | MS.gene07215:intron |
GAAAAGAAGAACTTGCACTG+TGG | 0.732569 | 1.4:+70306981 | None:intergenic |
TGGTAATTTCCACATCTACG+GGG | 0.744766 | 1.4:-70307090 | MS.gene07215:CDS |
CTAGAAAAGACACCTACCAG+GGG | 0.760370 | 1.4:-70308489 | MS.gene07215:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 70305633 | 70312888 | 70305633 | ID=MS.gene07215 |
chr1.4 | mRNA | 70305633 | 70312888 | 70305633 | ID=MS.gene07215.t1;Parent=MS.gene07215 |
chr1.4 | exon | 70312752 | 70312888 | 70312752 | ID=MS.gene07215.t1.exon1;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70312752 | 70312888 | 70312752 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70310792 | 70310965 | 70310792 | ID=MS.gene07215.t1.exon2;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70310792 | 70310965 | 70310792 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70310318 | 70310465 | 70310318 | ID=MS.gene07215.t1.exon3;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70310318 | 70310465 | 70310318 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70309695 | 70310009 | 70309695 | ID=MS.gene07215.t1.exon4;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70309695 | 70310009 | 70309695 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70309127 | 70309273 | 70309127 | ID=MS.gene07215.t1.exon5;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70309127 | 70309273 | 70309127 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70308872 | 70309052 | 70308872 | ID=MS.gene07215.t1.exon6;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70308872 | 70309052 | 70308872 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70308311 | 70308591 | 70308311 | ID=MS.gene07215.t1.exon7;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70308311 | 70308591 | 70308311 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70308090 | 70308203 | 70308090 | ID=MS.gene07215.t1.exon8;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70308090 | 70308203 | 70308090 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70307682 | 70307826 | 70307682 | ID=MS.gene07215.t1.exon9;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70307682 | 70307826 | 70307682 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70307266 | 70307534 | 70307266 | ID=MS.gene07215.t1.exon10;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70307266 | 70307534 | 70307266 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70306974 | 70307168 | 70306974 | ID=MS.gene07215.t1.exon11;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70306974 | 70307168 | 70306974 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70306315 | 70306842 | 70306315 | ID=MS.gene07215.t1.exon12;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70306315 | 70306842 | 70306315 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
chr1.4 | exon | 70305633 | 70305854 | 70305633 | ID=MS.gene07215.t1.exon13;Parent=MS.gene07215.t1 |
chr1.4 | CDS | 70305633 | 70305854 | 70305633 | ID=cds.MS.gene07215.t1;Parent=MS.gene07215.t1 |
Gene Sequence |
Protein sequence |