Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072498.t1 | XP_003626209.1 | 99 | 305 | 3 | 0 | 1 | 305 | 1 | 305 | 9.00E-174 | 619.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072498.t1 | O82631 | 70.1 | 308 | 89 | 1 | 1 | 305 | 1 | 308 | 4.0e-130 | 465.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072498.t1 | G7KXI8 | 99.0 | 305 | 3 | 0 | 1 | 305 | 1 | 305 | 6.5e-174 | 619.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072498 | MS.gene60755 | PPI |
| MS.gene072498 | MS.gene88855 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072498.t1 | MTR_7g112700 | 99.016 | 305 | 3 | 0 | 1 | 305 | 1 | 305 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072498.t1 | AT3G05520 | 70.847 | 295 | 86 | 0 | 11 | 305 | 41 | 335 | 1.65e-166 | 466 |
| MS.gene072498.t1 | AT3G05520 | 70.847 | 295 | 86 | 0 | 11 | 305 | 14 | 308 | 2.33e-166 | 464 |
| MS.gene072498.t1 | AT3G05520 | 70.847 | 295 | 86 | 0 | 11 | 305 | 14 | 308 | 1.67e-165 | 465 |
Find 59 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTGTCTACTGTGTAAA+TGG | 0.177590 | 7.3:+3863621 | MS.gene072498:CDS |
| ATGGGAGTTGGTGCTCAATT+TGG | 0.234047 | 7.3:+3863849 | MS.gene072498:CDS |
| AAGTGTGATTTGTTGTAAAT+TGG | 0.238558 | 7.3:-3861563 | None:intergenic |
| GGCATAGCCCACAAAATTTC+TGG | 0.238634 | 7.3:+3863703 | MS.gene072498:CDS |
| ATTGCTACTTGAGCAGTTCT+AGG | 0.251268 | 7.3:-3861852 | None:intergenic |
| ATAATTTATTGCAGGATCTT+AGG | 0.263472 | 7.3:+3864549 | MS.gene072498:intron |
| CAACAAACAGTGGAAGTAAA+AGG | 0.264679 | 7.3:+3863893 | MS.gene072498:CDS |
| CCTTCCCGATTCTACTTTCA+AGG | 0.306649 | 7.3:+3864455 | MS.gene072498:CDS |
| CTGCATACATTGAAGAATTT+CGG | 0.307423 | 7.3:+3862710 | MS.gene072498:CDS |
| TAGACAGAGCAGACACCTTT+TGG | 0.312257 | 7.3:-3863609 | None:intergenic |
| CAGGTACTGGTTACTTCATT+TGG | 0.318423 | 7.3:+3861801 | MS.gene072498:intron |
| GGAAATAAGGTGCGGGTGAC+TGG | 0.335841 | 7.3:-3864581 | None:intergenic |
| TGTTTATTGCAGATTCAGTC+TGG | 0.425383 | 7.3:+3863551 | MS.gene072498:intron |
| GTGACGAATAATGCTTGATA+TGG | 0.433415 | 7.3:-3864306 | None:intergenic |
| GGGTACCTTGAAAGTAGAAT+CGG | 0.434230 | 7.3:-3864460 | None:intergenic |
| AAGCAAGATACTCTGTTTCA+TGG | 0.435835 | 7.3:-3864328 | None:intergenic |
| ATGGCAAGCGCACAATCATC+GGG | 0.436189 | 7.3:-3864287 | None:intergenic |
| AGTGTTATGCCATGGAAATA+AGG | 0.442011 | 7.3:-3864594 | None:intergenic |
| GGAAGTAAAAGGGAAATTGC+AGG | 0.446385 | 7.3:+3863904 | MS.gene072498:CDS |
| GTTGAAGAAGTTTATCCAAA+AGG | 0.446811 | 7.3:+3863594 | MS.gene072498:CDS |
| GAAATTCAATACGTTGCAAA+AGG | 0.451513 | 7.3:+3861409 | MS.gene072498:CDS |
| TTTCTTCTTAATTCTCCTCC+TGG | 0.454464 | 7.3:+3861385 | MS.gene072498:CDS |
| CGAACCATCATCATTGAGAA+TGG | 0.468791 | 7.3:-3861513 | None:intergenic |
| GTTACATCTCCGCTTCGGTC+AGG | 0.469021 | 7.3:-3861602 | None:intergenic |
| TATGGCAAGCGCACAATCAT+CGG | 0.469592 | 7.3:-3864288 | None:intergenic |
| CTGTTGTGATTTCTGCTGCT+AGG | 0.485098 | 7.3:+3863682 | MS.gene072498:CDS |
| AGAAAGTTGAAATCGCGAAA+TGG | 0.498797 | 7.3:+3861362 | MS.gene072498:CDS |
| TTGTTTATAGCAATGGGAGT+TGG | 0.503772 | 7.3:+3863837 | MS.gene072498:intron |
| ATCTCAAAAGAACTTGGCAT+TGG | 0.506508 | 7.3:+3864641 | MS.gene072498:CDS |
| AACAAACAGTGGAAGTAAAA+GGG | 0.507621 | 7.3:+3863894 | MS.gene072498:CDS |
| TACAGAGGTCAGACCTGCAC+TGG | 0.519491 | 7.3:+3862672 | MS.gene072498:CDS |
| GCAAGCTCAAAATCAGAACC+TGG | 0.521132 | 7.3:-3863660 | None:intergenic |
| AGTTAGTTACATCTCCGCTT+CGG | 0.532930 | 7.3:-3861607 | None:intergenic |
| GGAAGCTCTTCATCCAGTGC+AGG | 0.547443 | 7.3:-3862685 | None:intergenic |
| GCTCTGTCTACTGTGTAAAT+GGG | 0.549498 | 7.3:+3863622 | MS.gene072498:CDS |
| AGAGACATCTCAAAAGAACT+TGG | 0.561996 | 7.3:+3864635 | MS.gene072498:CDS |
| TCACCCGCACCTTATTTCCA+TGG | 0.565832 | 7.3:+3864585 | MS.gene072498:CDS |
| AATTCTTCAATGTATGCAGA+TGG | 0.567391 | 7.3:-3862706 | None:intergenic |
| AATTGCAAAGTGTTATGCCA+TGG | 0.570664 | 7.3:-3864602 | None:intergenic |
| ATTTATTGCAGGATCTTAGG+AGG | 0.573913 | 7.3:+3864552 | MS.gene072498:intron |
| AAATCCATTCTCAATGATGA+TGG | 0.582060 | 7.3:+3861509 | MS.gene072498:CDS |
| GGTACCTTGAAAGTAGAATC+GGG | 0.585351 | 7.3:-3864459 | None:intergenic |
| GGGAAGGATACAGAGGGCCC+AGG | 0.589242 | 7.3:+3863642 | MS.gene072498:CDS |
| GCAACGTATTGAATTTCACC+AGG | 0.590563 | 7.3:-3861403 | None:intergenic |
| TGTAAATGGGAAGGATACAG+AGG | 0.598781 | 7.3:+3863635 | MS.gene072498:CDS |
| CAAGCTCAAAATCAGAACCT+GGG | 0.599793 | 7.3:-3863659 | None:intergenic |
| CCTTGAAAGTAGAATCGGGA+AGG | 0.599989 | 7.3:-3864455 | None:intergenic |
| TGTCTACTGTGTAAATGGGA+AGG | 0.606579 | 7.3:+3863626 | MS.gene072498:CDS |
| ACACACTTACTTGTTTAACA+TGG | 0.606781 | 7.3:-3861881 | None:intergenic |
| CTTTCAATGCCTGACCGAAG+CGG | 0.608367 | 7.3:+3861593 | MS.gene072498:CDS |
| AGAGTATCTTGCTTCTCTTG+AGG | 0.608730 | 7.3:+3864337 | MS.gene072498:CDS |
| ATGCCATGGAAATAAGGTGC+GGG | 0.634497 | 7.3:-3864588 | None:intergenic |
| GGCAAGCGCACAATCATCGG+GGG | 0.652306 | 7.3:-3864285 | None:intergenic |
| GTAAATGGGAAGGATACAGA+GGG | 0.659003 | 7.3:+3863636 | MS.gene072498:CDS |
| CAAAGACGACCAACAAACAG+TGG | 0.670671 | 7.3:+3863883 | MS.gene072498:CDS |
| AATGTTTCAGGTCTGTACAG+AGG | 0.690604 | 7.3:+3862657 | MS.gene072498:intron |
| TGGCAAGCGCACAATCATCG+GGG | 0.695223 | 7.3:-3864286 | None:intergenic |
| ACGTATTGAATTTCACCAGG+AGG | 0.702006 | 7.3:-3861400 | None:intergenic |
| TATGCCATGGAAATAAGGTG+CGG | 0.767155 | 7.3:-3864589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATTTAGTGAAATAA+AGG | + | chr7.3:3862379-3862398 | MS.gene072498:intron | 10.0% |
| !!! | AAAAGATTTAAAATTGATTT+TGG | - | chr7.3:3862121-3862140 | None:intergenic | 10.0% |
| !! | AAAAATGATTATGTTAAAGT+AGG | - | chr7.3:3863979-3863998 | None:intergenic | 15.0% |
| !! | AAAATGATTATGTTAAAGTA+GGG | - | chr7.3:3863978-3863997 | None:intergenic | 15.0% |
| !! | AAATAAAATATTTGAGAGAA+AGG | - | chr7.3:3863256-3863275 | None:intergenic | 15.0% |
| !! | AATATAGGATTATATAATAG+AGG | - | chr7.3:3864484-3864503 | None:intergenic | 15.0% |
| !! | AATTAGAAGAAATATTTAGT+TGG | + | chr7.3:3862520-3862539 | MS.gene072498:intron | 15.0% |
| !! | ATATAGGATTATATAATAGA+GGG | - | chr7.3:3864483-3864502 | None:intergenic | 15.0% |
| !! | TATAAATTGAAGGAAAAAAA+AGG | - | chr7.3:3862366-3862385 | None:intergenic | 15.0% |
| !! | TATTAAAGAAGAAATCTATT+TGG | - | chr7.3:3862981-3863000 | None:intergenic | 15.0% |
| !! | TTTCACTAAATATAAATTGA+AGG | - | chr7.3:3862376-3862395 | None:intergenic | 15.0% |
| !!! | AATTTTTCAATTAATTGGAT+CGG | + | chr7.3:3861687-3861706 | MS.gene072498:intron | 15.0% |
| !!! | ATCATTTTTATCCTATTTTT+AGG | + | chr7.3:3863990-3864009 | MS.gene072498:intron | 15.0% |
| !!! | TAATTCTTTTGGTTAAAATA+AGG | + | chr7.3:3863297-3863316 | MS.gene072498:intron | 15.0% |
| !!! | TAATTGTTTTCTAATTCTTA+GGG | + | chr7.3:3861642-3861661 | MS.gene072498:intron | 15.0% |
| !!! | TTAATTGTTTTCTAATTCTT+AGG | + | chr7.3:3861641-3861660 | MS.gene072498:intron | 15.0% |
| !!! | TTTTAAAATGACTGATAAAT+TGG | + | chr7.3:3863366-3863385 | MS.gene072498:intron | 15.0% |
| !! | AAAAGGCAATGAATATAATA+AGG | - | chr7.3:3862349-3862368 | None:intergenic | 20.0% |
| !! | AAAATTTCAATCATGGAAAT+TGG | - | chr7.3:3862745-3862764 | None:intergenic | 20.0% |
| !! | AATTTCAATAAGCAGAAAAT+TGG | - | chr7.3:3862483-3862502 | None:intergenic | 20.0% |
| !! | ATAAAAGTTAAATGGAACTA+TGG | - | chr7.3:3862290-3862309 | None:intergenic | 20.0% |
| !! | ATTAATACAACAAAGAATTG+TGG | - | chr7.3:3863281-3863300 | None:intergenic | 20.0% |
| !! | ATTAGATTGTCAAAAATAAG+TGG | - | chr7.3:3864166-3864185 | None:intergenic | 20.0% |
| !! | ATTCGAAAATGATAAGATAT+AGG | + | chr7.3:3864218-3864237 | MS.gene072498:intron | 20.0% |
| !! | CTCAAGAAATAAAAGTTAAA+TGG | - | chr7.3:3862298-3862317 | None:intergenic | 20.0% |
| !! | GACATAAAAAATTTCAATCA+TGG | - | chr7.3:3862752-3862771 | None:intergenic | 20.0% |
| !! | TATATTTAGTGAAATAAAGG+CGG | + | chr7.3:3862382-3862401 | MS.gene072498:intron | 20.0% |
| !! | TCGAATATATATACAAAAAG+AGG | - | chr7.3:3864204-3864223 | None:intergenic | 20.0% |
| !! | TGCAATAAATTATAATCAGA+AGG | - | chr7.3:3864542-3864561 | None:intergenic | 20.0% |
| !! | TTACTTAAAAATGAGCTTTA+GGG | + | chr7.3:3861921-3861940 | MS.gene072498:intron | 20.0% |
| !! | TTCTGATTATAATTTATTGC+AGG | + | chr7.3:3864541-3864560 | MS.gene072498:intron | 20.0% |
| !! | TTTACTTAAAAATGAGCTTT+AGG | + | chr7.3:3861920-3861939 | MS.gene072498:intron | 20.0% |
| !!! | AATACTTTAAAAGAAAAGGA+GGG | + | chr7.3:3863410-3863429 | MS.gene072498:intron | 20.0% |
| !!! | ATTTCTCAAAAAACTGTTTT+AGG | + | chr7.3:3862217-3862236 | MS.gene072498:intron | 20.0% |
| !!! | CATTTAACTTTTATTTCTTG+AGG | + | chr7.3:3862296-3862315 | MS.gene072498:intron | 20.0% |
| !!! | CTTTGTTGTATTAATTCTTT+TGG | + | chr7.3:3863286-3863305 | MS.gene072498:intron | 20.0% |
| !!! | CTTTTGATTTATTTATGTTC+AGG | + | chr7.3:3864262-3864281 | MS.gene072498:intron | 20.0% |
| !!! | TAGCAATACTTTAAAAGAAA+AGG | + | chr7.3:3863406-3863425 | MS.gene072498:intron | 20.0% |
| !!! | TTTGAATGTGAAAATCATTT+TGG | + | chr7.3:3861995-3862014 | MS.gene072498:intron | 20.0% |
| !!! | TTTTTATCCTATTTTTAGGT+TGG | + | chr7.3:3863994-3864013 | MS.gene072498:intron | 20.0% |
| ! | AAATATTTAGTTGGAGGTTA+GGG | + | chr7.3:3862529-3862548 | MS.gene072498:intron | 25.0% |
| ! | AAATTAACTTTGTGCATGTT+TGG | - | chr7.3:3862148-3862167 | None:intergenic | 25.0% |
| ! | AAGATTAACGGAATATCAAA+TGG | - | chr7.3:3862778-3862797 | None:intergenic | 25.0% |
| ! | ACAAATCTATACTTGTCAAA+AGG | - | chr7.3:3863075-3863094 | None:intergenic | 25.0% |
| ! | AGTATAACAGCAATTAATCT+TGG | + | chr7.3:3863341-3863360 | MS.gene072498:intron | 25.0% |
| ! | ATAATTTATTGCAGGATCTT+AGG | + | chr7.3:3864549-3864568 | MS.gene072498:intron | 25.0% |
| ! | ATTGTAAAAATGAAATGCTG+AGG | - | chr7.3:3861453-3861472 | None:intergenic | 25.0% |
| ! | CATAGGCTTAACATAAATAT+AGG | - | chr7.3:3864499-3864518 | None:intergenic | 25.0% |
| ! | GACAATTTGATAAATGTTTC+AGG | + | chr7.3:3862645-3862664 | MS.gene072498:intron | 25.0% |
| ! | TAAACAAAAGCCAAAGAAAA+AGG | - | chr7.3:3863824-3863843 | None:intergenic | 25.0% |
| ! | TAAAGCAAAACAGGAAAATT+TGG | + | chr7.3:3862554-3862573 | MS.gene072498:intron | 25.0% |
| ! | TAGAAGAAATATTTAGTTGG+AGG | + | chr7.3:3862523-3862542 | MS.gene072498:intron | 25.0% |
| ! | TATATATACAAAAAGAGGCA+AGG | - | chr7.3:3864199-3864218 | None:intergenic | 25.0% |
| ! | TCACTTCAGTAAAAGATTAA+CGG | - | chr7.3:3862790-3862809 | None:intergenic | 25.0% |
| !! | CAATACTTTAAAAGAAAAGG+AGG | + | chr7.3:3863409-3863428 | MS.gene072498:intron | 25.0% |
| !!! | AACTTTTATTTCTTGAGGAA+TGG | + | chr7.3:3862301-3862320 | MS.gene072498:intron | 25.0% |
| !!! | AAGTGTGATTTGTTGTAAAT+TGG | - | chr7.3:3861566-3861585 | None:intergenic | 25.0% |
| !!! | ACTTTTATTTCTTGAGGAAT+GGG | + | chr7.3:3862302-3862321 | MS.gene072498:intron | 25.0% |
| !!! | AGTTTTTTGAGAAATTGACT+TGG | - | chr7.3:3862212-3862231 | None:intergenic | 25.0% |
| !!! | GTATTTTGGTTGATAAACAA+AGG | - | chr7.3:3862190-3862209 | None:intergenic | 25.0% |
| AAATCCATTCTCAATGATGA+TGG | + | chr7.3:3861509-3861528 | MS.gene072498:CDS | 30.0% | |
| AACAAACAGTGGAAGTAAAA+GGG | + | chr7.3:3863894-3863913 | MS.gene072498:CDS | 30.0% | |
| AAGTTAAATGGAACTATGGT+TGG | - | chr7.3:3862286-3862305 | None:intergenic | 30.0% | |
| AATTCTTCAATGTATGCAGA+TGG | - | chr7.3:3862709-3862728 | None:intergenic | 30.0% | |
| ACACACTTACTTGTTTAACA+TGG | - | chr7.3:3861884-3861903 | None:intergenic | 30.0% | |
| CAAAAATCAACGACTATCAT+AGG | - | chr7.3:3864516-3864535 | None:intergenic | 30.0% | |
| CATAAATCAGCATTCCTTAT+CGG | + | chr7.3:3864095-3864114 | MS.gene072498:intron | 30.0% | |
| CTGCATACATTGAAGAATTT+CGG | + | chr7.3:3862710-3862729 | MS.gene072498:CDS | 30.0% | |
| GAAATATTTAGTTGGAGGTT+AGG | + | chr7.3:3862528-3862547 | MS.gene072498:intron | 30.0% | |
| GAAATTCAATACGTTGCAAA+AGG | + | chr7.3:3861409-3861428 | MS.gene072498:CDS | 30.0% | |
| GATTGTCAAAAATAAGTGGA+TGG | - | chr7.3:3864162-3864181 | None:intergenic | 30.0% | |
| GTTGAAGAAGTTTATCCAAA+AGG | + | chr7.3:3863594-3863613 | MS.gene072498:CDS | 30.0% | |
| TAAACAAAGGTTGACATAGA+TGG | - | chr7.3:3862177-3862196 | None:intergenic | 30.0% | |
| ! | AGTTAGTACTCCTTTTTCTT+TGG | + | chr7.3:3863811-3863830 | MS.gene072498:intron | 30.0% |
| ! | GAATTTGATTTCTTGTAGCT+AGG | + | chr7.3:3864364-3864383 | MS.gene072498:intron | 30.0% |
| !! | ACTTGTTATATGCATCTTCT+TGG | + | chr7.3:3862430-3862449 | MS.gene072498:intron | 30.0% |
| !! | ATTGATTTTGGCATGTTATG+AGG | - | chr7.3:3862074-3862093 | None:intergenic | 30.0% |
| !! | ATTGATTTTGGTATGTTTGC+AGG | - | chr7.3:3862109-3862128 | None:intergenic | 30.0% |
| !! | TGGCTTTTGTTTATAGCAAT+GGG | + | chr7.3:3863831-3863850 | MS.gene072498:intron | 30.0% |
| !! | TGTATGTGGAGAGTATTATA+AGG | + | chr7.3:3862456-3862475 | MS.gene072498:intron | 30.0% |
| !! | TTCGTTTTAAGCGTCTTTTA+AGG | + | chr7.3:3863183-3863202 | MS.gene072498:intron | 30.0% |
| !! | TTGGCTTTTGTTTATAGCAA+TGG | + | chr7.3:3863830-3863849 | MS.gene072498:intron | 30.0% |
| !!! | GAGAAATTGACTTGGTATTT+TGG | - | chr7.3:3862204-3862223 | None:intergenic | 30.0% |
| AAGCAAGATACTCTGTTTCA+TGG | - | chr7.3:3864331-3864350 | None:intergenic | 35.0% | |
| ACATTGTAACTAATCCCATC+TGG | - | chr7.3:3863036-3863055 | None:intergenic | 35.0% | |
| AGAAAGTTGAAATCGCGAAA+TGG | + | chr7.3:3861362-3861381 | MS.gene072498:CDS | 35.0% | |
| AGAGACATCTCAAAAGAACT+TGG | + | chr7.3:3864635-3864654 | MS.gene072498:CDS | 35.0% | |
| AGTGTTATGCCATGGAAATA+AGG | - | chr7.3:3864597-3864616 | None:intergenic | 35.0% | |
| ATAATGCATGCAAAAGACAC+AGG | - | chr7.3:3863511-3863530 | None:intergenic | 35.0% | |
| ATATGAAGCCTGTCAAGTTA+TGG | - | chr7.3:3864430-3864449 | None:intergenic | 35.0% | |
| ATCTCAAAAGAACTTGGCAT+TGG | + | chr7.3:3864641-3864660 | MS.gene072498:CDS | 35.0% | |
| ATGAGCACCAACCTAAAAAT+AGG | - | chr7.3:3864004-3864023 | None:intergenic | 35.0% | |
| ATGCCAAAATCAATCCTACT+CGG | + | chr7.3:3862080-3862099 | MS.gene072498:intron | 35.0% | |
| ATTTATTGCAGGATCTTAGG+AGG | + | chr7.3:3864552-3864571 | MS.gene072498:intron | 35.0% | |
| CAACAAACAGTGGAAGTAAA+AGG | + | chr7.3:3863893-3863912 | MS.gene072498:CDS | 35.0% | |
| CATCTTCTTGGATTTGTATG+TGG | + | chr7.3:3862442-3862461 | MS.gene072498:intron | 35.0% | |
| CATTATTGCTTGCATAACAC+AGG | + | chr7.3:3863525-3863544 | MS.gene072498:intron | 35.0% | |
| GAAATGCTGAGGAAGAAAAA+TGG | - | chr7.3:3861442-3861461 | None:intergenic | 35.0% | |
| GCATTCCTTATCGGTATATT+AGG | + | chr7.3:3864104-3864123 | MS.gene072498:intron | 35.0% | |
| GTGACGAATAATGCTTGATA+TGG | - | chr7.3:3864309-3864328 | None:intergenic | 35.0% | |
| TAACAAAAATCCCCTGACTT+GGG | + | chr7.3:3861765-3861784 | MS.gene072498:intron | 35.0% | |
| TCACACCTAATATACCGATA+AGG | - | chr7.3:3864112-3864131 | None:intergenic | 35.0% | |
| TGTTTATTGCAGATTCAGTC+TGG | + | chr7.3:3863551-3863570 | MS.gene072498:intron | 35.0% | |
| TTAGGTTTGGATAAGTTCCT+GGG | + | chr7.3:3861952-3861971 | MS.gene072498:intron | 35.0% | |
| TTCAATCATGGAAATTGGAG+AGG | - | chr7.3:3862740-3862759 | None:intergenic | 35.0% | |
| TTGTTTATAGCAATGGGAGT+TGG | + | chr7.3:3863837-3863856 | MS.gene072498:intron | 35.0% | |
| TTTCTTCTTAATTCTCCTCC+TGG | + | chr7.3:3861385-3861404 | MS.gene072498:CDS | 35.0% | |
| ! | AATTGCAAAGTGTTATGCCA+TGG | - | chr7.3:3864605-3864624 | None:intergenic | 35.0% |
| ! | CAAAAGGCATGATTCATGAT+AGG | - | chr7.3:3863059-3863078 | None:intergenic | 35.0% |
| ! | CAAAGATGCAACTCTTTTTC+AGG | + | chr7.3:3864068-3864087 | MS.gene072498:CDS | 35.0% |
| ! | CTTTTACTTCCACTGTTTGT+TGG | - | chr7.3:3863895-3863914 | None:intergenic | 35.0% |
| ! | TAGGGAAGATGATTTAGGTT+TGG | + | chr7.3:3861939-3861958 | MS.gene072498:intron | 35.0% |
| ! | TCACACACCAGAAATTTTGT+GGG | - | chr7.3:3863713-3863732 | None:intergenic | 35.0% |
| ! | TTCACACACCAGAAATTTTG+TGG | - | chr7.3:3863714-3863733 | None:intergenic | 35.0% |
| ! | TTTAGGTTTGGATAAGTTCC+TGG | + | chr7.3:3861951-3861970 | MS.gene072498:intron | 35.0% |
| !! | AGCTTTAGGGAAGATGATTT+AGG | + | chr7.3:3861934-3861953 | MS.gene072498:intron | 35.0% |
| !! | CGATAAGGAATGCTGATTTA+TGG | - | chr7.3:3864097-3864116 | None:intergenic | 35.0% |
| !! | TTTCCGAGTAGGATTGATTT+TGG | - | chr7.3:3862086-3862105 | None:intergenic | 35.0% |
| !!! | AAGTTCTTTTGAGATGTCTC+TGG | - | chr7.3:3864636-3864655 | None:intergenic | 35.0% |
| ACCGCAACACAAGTCATATT+TGG | - | chr7.3:3862588-3862607 | None:intergenic | 40.0% | |
| ACGTATTGAATTTCACCAGG+AGG | - | chr7.3:3861403-3861422 | None:intergenic | 40.0% | |
| AGTTAGTTACATCTCCGCTT+CGG | - | chr7.3:3861610-3861629 | None:intergenic | 40.0% | |
| ATAAAGGCGGAGCAAATCAA+AGG | + | chr7.3:3862395-3862414 | MS.gene072498:intron | 40.0% | |
| ATAAGTGGATGGACATGTAC+AGG | - | chr7.3:3864151-3864170 | None:intergenic | 40.0% | |
| ATCTGGTGGGAAACTTGAAA+AGG | - | chr7.3:3863019-3863038 | None:intergenic | 40.0% | |
| CAAGCTCAAAATCAGAACCT+GGG | - | chr7.3:3863662-3863681 | None:intergenic | 40.0% | |
| CGAACCATCATCATTGAGAA+TGG | - | chr7.3:3861516-3861535 | None:intergenic | 40.0% | |
| CTGTTAGATGACTACTTCAC+TGG | + | chr7.3:3863755-3863774 | MS.gene072498:intron | 40.0% | |
| GCAACGTATTGAATTTCACC+AGG | - | chr7.3:3861406-3861425 | None:intergenic | 40.0% | |
| GCTAATGACCATAACTTGAC+AGG | + | chr7.3:3864419-3864438 | MS.gene072498:intron | 40.0% | |
| GCTCTGTCTACTGTGTAAAT+GGG | + | chr7.3:3863622-3863641 | MS.gene072498:CDS | 40.0% | |
| GGAAGTAAAAGGGAAATTGC+AGG | + | chr7.3:3863904-3863923 | MS.gene072498:CDS | 40.0% | |
| GGGTACCTTGAAAGTAGAAT+CGG | - | chr7.3:3864463-3864482 | None:intergenic | 40.0% | |
| GGTACCTTGAAAGTAGAATC+GGG | - | chr7.3:3864462-3864481 | None:intergenic | 40.0% | |
| GTAAATGGGAAGGATACAGA+GGG | + | chr7.3:3863636-3863655 | MS.gene072498:CDS | 40.0% | |
| GTAACAAAAATCCCCTGACT+TGG | + | chr7.3:3861764-3861783 | MS.gene072498:intron | 40.0% | |
| GTTAGGGCATAAAGCAAAAC+AGG | + | chr7.3:3862545-3862564 | MS.gene072498:intron | 40.0% | |
| TAAGTTCACGCAGATGATTG+AGG | - | chr7.3:3862929-3862948 | None:intergenic | 40.0% | |
| TATGCCATGGAAATAAGGTG+CGG | - | chr7.3:3864592-3864611 | None:intergenic | 40.0% | |
| TCACATCAAAAACCGTTGTG+CGG | - | chr7.3:3862814-3862833 | None:intergenic | 40.0% | |
| TGCTCTGTCTACTGTGTAAA+TGG | + | chr7.3:3863621-3863640 | MS.gene072498:CDS | 40.0% | |
| TGGGAAACTTGAAAAGGCTT+TGG | - | chr7.3:3863013-3863032 | None:intergenic | 40.0% | |
| TGTAAATGGGAAGGATACAG+AGG | + | chr7.3:3863635-3863654 | MS.gene072498:CDS | 40.0% | |
| TGTAACTAATCCCATCTGGT+GGG | - | chr7.3:3863032-3863051 | None:intergenic | 40.0% | |
| TGTCTACTGTGTAAATGGGA+AGG | + | chr7.3:3863626-3863645 | MS.gene072498:CDS | 40.0% | |
| TTGTAACTAATCCCATCTGG+TGG | - | chr7.3:3863033-3863052 | None:intergenic | 40.0% | |
| TTTGTGCTAAGCTGTATCGT+TGG | + | chr7.3:3862609-3862628 | MS.gene072498:intron | 40.0% | |
| TTTGTTCAACTCACTTTCCC+AGG | - | chr7.3:3861972-3861991 | None:intergenic | 40.0% | |
| ! | AATGTTTCAGGTCTGTACAG+AGG | + | chr7.3:3862657-3862676 | MS.gene072498:intron | 40.0% |
| ! | ACAACGGTTTTTGATGTGAG+GGG | + | chr7.3:3862815-3862834 | MS.gene072498:intron | 40.0% |
| ! | AGAGTATCTTGCTTCTCTTG+AGG | + | chr7.3:3864337-3864356 | MS.gene072498:CDS | 40.0% |
| ! | ATTGCTACTTGAGCAGTTCT+AGG | - | chr7.3:3861855-3861874 | None:intergenic | 40.0% |
| ! | CACAACGGTTTTTGATGTGA+GGG | + | chr7.3:3862814-3862833 | MS.gene072498:intron | 40.0% |
| ! | GAAACTTGAAAAGGCTTTGG+TGG | - | chr7.3:3863010-3863029 | None:intergenic | 40.0% |
| ! | GCCAAATATGACTTGTGTTG+CGG | + | chr7.3:3862584-3862603 | MS.gene072498:intron | 40.0% |
| !! | CAGGTACTGGTTACTTCATT+TGG | + | chr7.3:3861801-3861820 | MS.gene072498:intron | 40.0% |
| !! | GGTTGGTGCTCATTATTTTG+AGG | + | chr7.3:3864011-3864030 | MS.gene072498:intron | 40.0% |
| !! | TTTCAAGTTTCCCACCAGAT+GGG | + | chr7.3:3863019-3863038 | MS.gene072498:intron | 40.0% |
| !!! | GGTGCTCATTATTTTGAGGA+AGG | + | chr7.3:3864015-3864034 | MS.gene072498:CDS | 40.0% |
| !!! | TTTTCAAGTTTCCCACCAGA+TGG | + | chr7.3:3863018-3863037 | MS.gene072498:intron | 40.0% |
| ATGCCATGGAAATAAGGTGC+GGG | - | chr7.3:3864591-3864610 | None:intergenic | 45.0% | |
| ATGTTTGCAGGTTTCCGAGT+AGG | - | chr7.3:3862097-3862116 | None:intergenic | 45.0% | |
| CAAAGACGACCAACAAACAG+TGG | + | chr7.3:3863883-3863902 | MS.gene072498:CDS | 45.0% | |
| CACATCAAAAACCGTTGTGC+GGG | - | chr7.3:3862813-3862832 | None:intergenic | 45.0% | |
| CCTTCCCGATTCTACTTTCA+AGG | + | chr7.3:3864455-3864474 | MS.gene072498:CDS | 45.0% | |
| CCTTGAAAGTAGAATCGGGA+AGG | - | chr7.3:3864458-3864477 | None:intergenic | 45.0% | |
| CTGTTGTGATTTCTGCTGCT+AGG | + | chr7.3:3863682-3863701 | MS.gene072498:CDS | 45.0% | |
| GCAAGCTCAAAATCAGAACC+TGG | - | chr7.3:3863663-3863682 | None:intergenic | 45.0% | |
| GGCATAGCCCACAAAATTTC+TGG | + | chr7.3:3863703-3863722 | MS.gene072498:CDS | 45.0% | |
| TATGGCAAGCGCACAATCAT+CGG | - | chr7.3:3864291-3864310 | None:intergenic | 45.0% | |
| ! | ACTTGAAAAGGCTTTGGTGG+TGG | - | chr7.3:3863007-3863026 | None:intergenic | 45.0% |
| ! | GCACAACGGTTTTTGATGTG+AGG | + | chr7.3:3862813-3862832 | MS.gene072498:intron | 45.0% |
| ! | TAGACAGAGCAGACACCTTT+TGG | - | chr7.3:3863612-3863631 | None:intergenic | 45.0% |
| !! | AAAGAAAAGGAGGGAGCACT+TGG | + | chr7.3:3863419-3863438 | MS.gene072498:intron | 45.0% |
| !! | ATGGGAGTTGGTGCTCAATT+TGG | + | chr7.3:3863849-3863868 | MS.gene072498:CDS | 45.0% |
| !!! | TATTTAATTTTTCAATTAAT+TGG | + | chr7.3:3861682-3861701 | MS.gene072498:intron | 5.0% |
| AACCAGTACCTGCATGCAGT+AGG | - | chr7.3:3861793-3861812 | None:intergenic | 50.0% | |
| AACCTACTGCATGCAGGTAC+TGG | + | chr7.3:3861788-3861807 | MS.gene072498:intron | 50.0% | |
| ACCCTATTGTAGCCAGGAAG+TGG | + | chr7.3:3863127-3863146 | MS.gene072498:intron | 50.0% | |
| ACGTGAACCCTATTGTAGCC+AGG | + | chr7.3:3863121-3863140 | MS.gene072498:intron | 50.0% | |
| ATGCAGTAGGTTCCCAAGTC+AGG | - | chr7.3:3861780-3861799 | None:intergenic | 50.0% | |
| ATGGCAAGCGCACAATCATC+GGG | - | chr7.3:3864290-3864309 | None:intergenic | 50.0% | |
| CCCACTTCCTGGCTACAATA+GGG | - | chr7.3:3863131-3863150 | None:intergenic | 50.0% | |
| CCCTATTGTAGCCAGGAAGT+GGG | + | chr7.3:3863128-3863147 | MS.gene072498:intron | 50.0% | |
| CTTTCAATGCCTGACCGAAG+CGG | + | chr7.3:3861593-3861612 | MS.gene072498:CDS | 50.0% | |
| TACTGAAGTGACCCGCACAA+CGG | + | chr7.3:3862799-3862818 | MS.gene072498:intron | 50.0% | |
| TCCCACTTCCTGGCTACAAT+AGG | - | chr7.3:3863132-3863151 | None:intergenic | 50.0% | |
| TGCAGTAGGTTCCCAAGTCA+GGG | - | chr7.3:3861779-3861798 | None:intergenic | 50.0% | |
| ! | ACGGTTTTTGATGTGAGGGG+TGG | + | chr7.3:3862818-3862837 | MS.gene072498:intron | 50.0% |
| ! | TCACCCGCACCTTATTTCCA+TGG | + | chr7.3:3864585-3864604 | MS.gene072498:CDS | 50.0% |
| CATGTACGAGTCCCACTTCC+TGG | - | chr7.3:3863142-3863161 | None:intergenic | 55.0% | |
| CTTGGGAACCTACTGCATGC+AGG | + | chr7.3:3861782-3861801 | MS.gene072498:intron | 55.0% | |
| GCAGTAGGTTCCCAAGTCAG+GGG | - | chr7.3:3861778-3861797 | None:intergenic | 55.0% | |
| GGAAATAAGGTGCGGGTGAC+TGG | - | chr7.3:3864584-3864603 | None:intergenic | 55.0% | |
| GGAAGCTCTTCATCCAGTGC+AGG | - | chr7.3:3862688-3862707 | None:intergenic | 55.0% | |
| GTTACATCTCCGCTTCGGTC+AGG | - | chr7.3:3861605-3861624 | None:intergenic | 55.0% | |
| TACAGAGGTCAGACCTGCAC+TGG | + | chr7.3:3862672-3862691 | MS.gene072498:CDS | 55.0% | |
| TGGCAAGCGCACAATCATCG+GGG | - | chr7.3:3864289-3864308 | None:intergenic | 55.0% | |
| GGCAAGCGCACAATCATCGG+GGG | - | chr7.3:3864288-3864307 | None:intergenic | 60.0% | |
| GGGAAGGATACAGAGGGCCC+AGG | + | chr7.3:3863642-3863661 | MS.gene072498:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3861322 | 3864670 | 3861322 | ID=MS.gene072498 |
| chr7.3 | mRNA | 3861322 | 3864670 | 3861322 | ID=MS.gene072498.t1;Parent=MS.gene072498 |
| chr7.3 | exon | 3861322 | 3861430 | 3861322 | ID=MS.gene072498.t1.exon1;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3861322 | 3861430 | 3861322 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3861504 | 3861619 | 3861504 | ID=MS.gene072498.t1.exon2;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3861504 | 3861619 | 3861504 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3861804 | 3861893 | 3861804 | ID=MS.gene072498.t1.exon3;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3861804 | 3861893 | 3861804 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3862667 | 3862731 | 3862667 | ID=MS.gene072498.t1.exon4;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3862667 | 3862731 | 3862667 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3863563 | 3863724 | 3863563 | ID=MS.gene072498.t1.exon5;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3863563 | 3863724 | 3863563 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3863847 | 3863925 | 3863847 | ID=MS.gene072498.t1.exon6;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3863847 | 3863925 | 3863847 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3864012 | 3864089 | 3864012 | ID=MS.gene072498.t1.exon7;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3864012 | 3864089 | 3864012 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3864284 | 3864358 | 3864284 | ID=MS.gene072498.t1.exon8;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3864284 | 3864358 | 3864284 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3864441 | 3864476 | 3864441 | ID=MS.gene072498.t1.exon9;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3864441 | 3864476 | 3864441 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| chr7.3 | exon | 3864563 | 3864670 | 3864563 | ID=MS.gene072498.t1.exon10;Parent=MS.gene072498.t1 |
| chr7.3 | CDS | 3864563 | 3864670 | 3864563 | ID=cds.MS.gene072498.t1;Parent=MS.gene072498.t1 |
| Gene Sequence |
| Protein sequence |
