Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072569.t1 | XP_013450438.1 | 99 | 399 | 4 | 0 | 1 | 399 | 13 | 411 | 6.50E-233 | 816.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072569.t1 | F4I562 | 77.6 | 402 | 86 | 1 | 1 | 398 | 13 | 414 | 1.9e-193 | 676.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072569.t1 | A0A072U533 | 99.0 | 399 | 4 | 0 | 1 | 399 | 13 | 411 | 4.7e-233 | 816.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054375 | MS.gene072569 | 0.948502 | 8.31E-107 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTCTTAAAATTCT+GGG | - | 51768:35017-35036 | MS.gene072569:intron | 10.0% |
| !!! | TTTTTATTTTCTTAAAATTC+TGG | - | 51768:35016-35035 | MS.gene072569:intron | 10.0% |
| !! | AAAAACTTGAAAAAGATAAT+GGG | + | 51768:32572-32591 | None:intergenic | 15.0% |
| !! | AACAATTATGTTATTAGATT+CGG | + | 51768:33106-33125 | None:intergenic | 15.0% |
| !! | AATTTAATGTGTATAAGTTA+AGG | + | 51768:34242-34261 | None:intergenic | 15.0% |
| !! | ACTAACAAAATATGATTATT+GGG | - | 51768:32863-32882 | MS.gene072569:CDS | 15.0% |
| !! | TAATAACATAATTGTTATAG+AGG | - | 51768:33110-33129 | MS.gene072569:intron | 15.0% |
| !!! | GTCTTATTTTTAAAAATATC+TGG | - | 51768:33813-33832 | MS.gene072569:intron | 15.0% |
| !!! | TTGTTATTATGTTTGATAAA+TGG | - | 51768:34315-34334 | MS.gene072569:intron | 15.0% |
| !! | AACCAAATAAATGATGAAAA+CGG | - | 51768:33136-33155 | MS.gene072569:intron | 20.0% |
| !! | AATTTAAGCTAATGAATTAC+AGG | - | 51768:34887-34906 | MS.gene072569:intron | 20.0% |
| !! | AGAAAAGAAACTAAATATCA+CGG | + | 51768:34466-34485 | None:intergenic | 20.0% |
| !! | ATCTACATAAACTTCATTAT+TGG | + | 51768:33682-33701 | None:intergenic | 20.0% |
| !! | CACTAACAAAATATGATTAT+TGG | - | 51768:32862-32881 | MS.gene072569:CDS | 20.0% |
| !! | GAAAAACTTGAAAAAGATAA+TGG | + | 51768:32573-32592 | None:intergenic | 20.0% |
| !!! | AATTTATAGTAAAGCATCTT+AGG | - | 51768:34258-34277 | MS.gene072569:intron | 20.0% |
| !!! | CAATAATCATATTTTGTTAG+TGG | + | 51768:32864-32883 | None:intergenic | 20.0% |
| !!! | CTTAACTTTGACAATTTTAT+GGG | - | 51768:33766-33785 | MS.gene072569:intron | 20.0% |
| !!! | TCTTAACTTTGACAATTTTA+TGG | - | 51768:33765-33784 | MS.gene072569:intron | 20.0% |
| !!! | TTTGATTTGTTGTTTTGTTT+AGG | - | 51768:33429-33448 | MS.gene072569:intron | 20.0% |
| ! | AACAAAACAACAAATCAAAG+TGG | + | 51768:33428-33447 | None:intergenic | 25.0% |
| ! | AAGACTTTGCTAACAATATT+TGG | + | 51768:33564-33583 | None:intergenic | 25.0% |
| ! | AATAACAAAGTTGTCTTTGA+TGG | + | 51768:32794-32813 | None:intergenic | 25.0% |
| ! | ACAAAACAACAAATCAAAGT+GGG | + | 51768:33427-33446 | None:intergenic | 25.0% |
| ! | ACAAAATATGATTATTGGGT+TGG | - | 51768:32867-32886 | MS.gene072569:CDS | 25.0% |
| ! | AGACAGTTAAATAATACAAC+TGG | - | 51768:32968-32987 | MS.gene072569:CDS | 25.0% |
| ! | AGTTAACATTCTTTCTAACA+AGG | - | 51768:35246-35265 | MS.gene072569:intron | 25.0% |
| ! | ATAAAATTTCAGCCGATATA+AGG | + | 51768:34575-34594 | None:intergenic | 25.0% |
| ! | ATAACTTAGTCAAATCCTTA+CGG | - | 51768:34031-34050 | MS.gene072569:intron | 25.0% |
| ! | ATGAAAGAAGTTGAAAGAAA+TGG | + | 51768:34650-34669 | None:intergenic | 25.0% |
| ! | ATTATGTTTGATAAATGGCA+AGG | - | 51768:34320-34339 | MS.gene072569:intron | 25.0% |
| ! | ATTTGACTAAGTTATACGTT+GGG | + | 51768:34026-34045 | None:intergenic | 25.0% |
| ! | CACAAATGAAAGAATTTGAT+TGG | + | 51768:34854-34873 | None:intergenic | 25.0% |
| ! | GATGTAATCAATGATTATCT+TGG | - | 51768:32751-32770 | MS.gene072569:intron | 25.0% |
| ! | GGAACTAAAAATGAATTGAA+TGG | + | 51768:32717-32736 | None:intergenic | 25.0% |
| !! | AACCGTTTTCATCATTTATT+TGG | + | 51768:33141-33160 | None:intergenic | 25.0% |
| !! | AAGGTACTTACTTAATAAAC+AGG | - | 51768:35265-35284 | MS.gene072569:intron | 25.0% |
| !! | CATACTTGTTGCTAAAAATT+TGG | - | 51768:34667-34686 | MS.gene072569:intron | 25.0% |
| !! | CTAAAAATTTGGTTCATTCA+GGG | - | 51768:34678-34697 | MS.gene072569:intron | 25.0% |
| !! | TTGAAAACTATTTCTCTGAT+TGG | - | 51768:34127-34146 | MS.gene072569:intron | 25.0% |
| !!! | CAAAACTTCATTTCTAGTAA+AGG | - | 51768:34425-34444 | MS.gene072569:CDS | 25.0% |
| !!! | CAACTTTGTTATTGTTTATG+AGG | - | 51768:32801-32820 | MS.gene072569:intron | 25.0% |
| !!! | TCATTTTTAGTTCCTTTGTA+GGG | - | 51768:32723-32742 | MS.gene072569:intron | 25.0% |
| !!! | TTCATTTTTAGTTCCTTTGT+AGG | - | 51768:32722-32741 | MS.gene072569:intron | 25.0% |
| AAATGGATGCAACAATAAAC+AGG | - | 51768:33712-33731 | MS.gene072569:intron | 30.0% | |
| AACGGTTTCAAATCCTAATT+AGG | + | 51768:34938-34957 | None:intergenic | 30.0% | |
| AAGAGTCAAAAGTAGAAGAA+AGG | + | 51768:33346-33365 | None:intergenic | 30.0% | |
| ACTTCATTATTGGCATACTT+AGG | + | 51768:33672-33691 | None:intergenic | 30.0% | |
| ACTTTGCTAACAATATTTGG+CGG | + | 51768:33561-33580 | None:intergenic | 30.0% | |
| ATAAGGAGATAGTTGTGTTA+GGG | - | 51768:33992-34011 | MS.gene072569:intron | 30.0% | |
| ATAATAATGCCTCCTTGAAA+AGG | + | 51768:33921-33940 | None:intergenic | 30.0% | |
| ATAGATTATGTGTTCGACTT+CGG | - | 51768:33893-33912 | MS.gene072569:intron | 30.0% | |
| ATATTAGGTTCTGTAGTTAG+TGG | + | 51768:33519-33538 | None:intergenic | 30.0% | |
| ATCTGACTATTTAGACTTGA+TGG | + | 51768:35326-35345 | None:intergenic | 30.0% | |
| CAAAACAACAAATCAAAGTG+GGG | + | 51768:33426-33445 | None:intergenic | 30.0% | |
| CAATATGACTTCCCAAATAA+CGG | + | 51768:34956-34975 | None:intergenic | 30.0% | |
| CATATATGAATGATTTCAGC+TGG | + | 51768:34295-34314 | None:intergenic | 30.0% | |
| CTTCATTATTGGCATACTTA+GGG | + | 51768:33671-33690 | None:intergenic | 30.0% | |
| GAACTTGTGAAACCTTATAT+CGG | - | 51768:34560-34579 | MS.gene072569:CDS | 30.0% | |
| GATTTGACTAAGTTATACGT+TGG | + | 51768:34027-34046 | None:intergenic | 30.0% | |
| GCAAATGAAAGAGTTAAATC+AGG | + | 51768:34769-34788 | None:intergenic | 30.0% | |
| GTAATCAATGATTATCTTGG+CGG | - | 51768:32754-32773 | MS.gene072569:intron | 30.0% | |
| GTGTGTTAAAATCTGTTTCA+TGG | - | 51768:34983-35002 | MS.gene072569:intron | 30.0% | |
| TATAAGGAGATAGTTGTGTT+AGG | - | 51768:33991-34010 | MS.gene072569:intron | 30.0% | |
| TGCATAAATACAGACTACTA+AGG | + | 51768:34627-34646 | None:intergenic | 30.0% | |
| TGTAGATCTTGTAGAACAAA+TGG | - | 51768:33695-33714 | MS.gene072569:intron | 30.0% | |
| TTCCTATGAATTGCAAATCA+TGG | + | 51768:32671-32690 | None:intergenic | 30.0% | |
| ! | AACTGTGGCTTTACATATAT+TGG | + | 51768:35085-35104 | None:intergenic | 30.0% |
| ! | ACTGTGGCTTTACATATATT+GGG | + | 51768:35084-35103 | None:intergenic | 30.0% |
| ! | AGGATTTGAAACCGTTATTT+GGG | - | 51768:34942-34961 | MS.gene072569:intron | 30.0% |
| ! | ATTAGCTTAAATTGTCCATC+AGG | + | 51768:34880-34899 | None:intergenic | 30.0% |
| ! | GCTAAAAATTTGGTTCATTC+AGG | - | 51768:34677-34696 | MS.gene072569:intron | 30.0% |
| ! | GTTTTTGTTAATGTAGCTGT+TGG | - | 51768:33470-33489 | MS.gene072569:intron | 30.0% |
| ! | TAGGATTTGAAACCGTTATT+TGG | - | 51768:34941-34960 | MS.gene072569:intron | 30.0% |
| ! | TTTTGGATTGATCGTAGTAT+AGG | - | 51768:33218-33237 | MS.gene072569:CDS | 30.0% |
| !! | ACTTGAAAAAGATAATGGGT+TGG | + | 51768:32568-32587 | None:intergenic | 30.0% |
| !! | TATTTTTGCACCTCTAATCT+GGG | - | 51768:34169-34188 | MS.gene072569:intron | 30.0% |
| AAAACCTTTGTAGAAACGGT+AGG | + | 51768:35592-35611 | None:intergenic | 35.0% | |
| AAACCTTTGTAGAAACGGTA+GGG | + | 51768:35591-35610 | None:intergenic | 35.0% | |
| AAGCTGAAACTGAACGTTAA+CGG | + | 51768:35182-35201 | None:intergenic | 35.0% | |
| ACTAATGTTCCAGACATTGA+GGG | + | 51768:35453-35472 | None:intergenic | 35.0% | |
| AGAATTTGATTGGATTCCCA+AGG | + | 51768:34844-34863 | None:intergenic | 35.0% | |
| ATCATCTCTTGCAGGATATT+AGG | + | 51768:33534-33553 | None:intergenic | 35.0% | |
| ATCCCAAAACCAGTTACAAA+TGG | + | 51768:32506-32525 | None:intergenic | 35.0% | |
| ATTATTGGCATACTTAGGGT+CGG | + | 51768:33667-33686 | None:intergenic | 35.0% | |
| CTAAAAGCCACTTGAAATGT+GGG | + | 51768:35510-35529 | None:intergenic | 35.0% | |
| CTATGTCTGATGTCCTAATT+AGG | - | 51768:34922-34941 | MS.gene072569:intron | 35.0% | |
| CTCGAAAACCTTTGTAGAAA+CGG | + | 51768:35596-35615 | None:intergenic | 35.0% | |
| GACATGCCATCTTAATGTAA+TGG | - | 51768:35120-35139 | MS.gene072569:intron | 35.0% | |
| GCATTGAAACTTCAGATTGA+AGG | + | 51768:33317-33336 | None:intergenic | 35.0% | |
| GGCATGTATTATTACCTCAA+TGG | + | 51768:32650-32669 | None:intergenic | 35.0% | |
| GTGTATAAGTTAAGGACACA+AGG | + | 51768:34234-34253 | None:intergenic | 35.0% | |
| TCTGATAGATCACGATGTAA+AGG | + | 51768:35389-35408 | None:intergenic | 35.0% | |
| TGCCAACCATTACATTAAGA+TGG | + | 51768:35129-35148 | None:intergenic | 35.0% | |
| TGCCATCTTAATGTAATGGT+TGG | - | 51768:35124-35143 | MS.gene072569:intron | 35.0% | |
| TTGGATGAGATGATAGACAA+TGG | - | 51768:33489-33508 | MS.gene072569:intron | 35.0% | |
| TTTCAGAGCAAACGTTACAA+GGG | + | 51768:33371-33390 | None:intergenic | 35.0% | |
| ! | AAATTTGGTTCATTCAGGGA+TGG | - | 51768:34682-34701 | MS.gene072569:intron | 35.0% |
| ! | AATAACAGGTTGTTGCTTGA+AGG | + | 51768:32539-32558 | None:intergenic | 35.0% |
| ! | ATTCTAGAGAAACAACTCAC+TGG | - | 51768:32463-32482 | MS.gene072569:CDS | 35.0% |
| ! | CTGTGGCTTTACATATATTG+GGG | + | 51768:35083-35102 | None:intergenic | 35.0% |
| ! | TGCCATGATTTGCAATTCAT+AGG | - | 51768:32666-32685 | MS.gene072569:CDS | 35.0% |
| ! | TTTTCAGAGCAAACGTTACA+AGG | + | 51768:33372-33391 | None:intergenic | 35.0% |
| !! | GTATTTTTGCACCTCTAATC+TGG | - | 51768:34168-34187 | MS.gene072569:intron | 35.0% |
| !! | TTGTAGTCATTGTGCCATTT+GGG | - | 51768:33181-33200 | MS.gene072569:intron | 35.0% |
| !!! | CTCCATTTGTAACTGGTTTT+GGG | - | 51768:32501-32520 | MS.gene072569:CDS | 35.0% |
| !!! | CTTTTTCAAGTTTTTCGCGA+TGG | - | 51768:32577-32596 | MS.gene072569:CDS | 35.0% |
| AAGGCCGAAATCTAACACAA+GGG | + | 51768:34825-34844 | None:intergenic | 40.0% | |
| AGATCAGCTGATAAGATGCA+AGG | + | 51768:35208-35227 | None:intergenic | 40.0% | |
| AGATGTACCAACCAAAGAGT+AGG | - | 51768:34353-34372 | MS.gene072569:intron | 40.0% | |
| AGCTTAAATTGTCCATCAGG+AGG | + | 51768:34877-34896 | None:intergenic | 40.0% | |
| AGTTGAAATGCCACCTTTGA+TGG | - | 51768:32624-32643 | MS.gene072569:CDS | 40.0% | |
| ATAGCAGGACTAACATAGGT+AGG | + | 51768:33948-33967 | None:intergenic | 40.0% | |
| ATCTCCTTATATCCGAGCTT+GGG | + | 51768:33982-34001 | None:intergenic | 40.0% | |
| ATGCATAGCAGGACTAACAT+AGG | + | 51768:33952-33971 | None:intergenic | 40.0% | |
| ATGTACCAACCAAAGAGTAG+GGG | - | 51768:34355-34374 | MS.gene072569:intron | 40.0% | |
| ATTACCTCAATGGCCATCAA+AGG | + | 51768:32640-32659 | None:intergenic | 40.0% | |
| ATTAGGACATCAGACATAGC+TGG | + | 51768:34921-34940 | None:intergenic | 40.0% | |
| ATTAGTGCTTGAGACTGGAA+TGG | - | 51768:35467-35486 | MS.gene072569:CDS | 40.0% | |
| CAAGTAAATTCCCACATCAC+TGG | - | 51768:34739-34758 | MS.gene072569:intron | 40.0% | |
| CACTAATGTTCCAGACATTG+AGG | + | 51768:35454-35473 | None:intergenic | 40.0% | |
| CCGTCCACAACAATAACAAT+CGG | - | 51768:33279-33298 | MS.gene072569:CDS | 40.0% | |
| CCTAAAAGCCACTTGAAATG+TGG | + | 51768:35511-35530 | None:intergenic | 40.0% | |
| CGTATTTGATTCATGCCGTA+AGG | + | 51768:34049-34068 | None:intergenic | 40.0% | |
| CTAATGTTCCAGACATTGAG+GGG | + | 51768:35452-35471 | None:intergenic | 40.0% | |
| CTCACATCATCAAGGATTGA+AGG | + | 51768:34796-34815 | None:intergenic | 40.0% | |
| CTGGTGAAGTGTGAGATTAA+TGG | - | 51768:34709-34728 | MS.gene072569:intron | 40.0% | |
| CTGTTCAGTAAGTCAGCAAA+AGG | + | 51768:34516-34535 | None:intergenic | 40.0% | |
| CTTTGAGCAAAGTTATGAGG+AGG | + | 51768:33258-33277 | None:intergenic | 40.0% | |
| GAAACAAAGTCAAGCCCAAA+TGG | + | 51768:33198-33217 | None:intergenic | 40.0% | |
| GAAGTGTGAGATTAATGGTG+AGG | - | 51768:34714-34733 | MS.gene072569:intron | 40.0% | |
| GATGTACCAACCAAAGAGTA+GGG | - | 51768:34354-34373 | MS.gene072569:intron | 40.0% | |
| GGACTTTGAGCAAAGTTATG+AGG | + | 51768:33261-33280 | None:intergenic | 40.0% | |
| TAATGTTCCAGACATTGAGG+GGG | + | 51768:35451-35470 | None:intergenic | 40.0% | |
| TACAAATGGAGCGATCAACA+CGG | + | 51768:32492-32511 | None:intergenic | 40.0% | |
| TATCTCCTTATATCCGAGCT+TGG | + | 51768:33983-34002 | None:intergenic | 40.0% | |
| TCCACCCTTGTGTTAGATTT+CGG | - | 51768:34818-34837 | MS.gene072569:intron | 40.0% | |
| TGAATGATTTCAGCTGGCTA+CGG | + | 51768:34289-34308 | None:intergenic | 40.0% | |
| TGACTTCAAATTCACCTGCT+CGG | + | 51768:35626-35645 | None:intergenic | 40.0% | |
| TGATCTATCAGACATGCACT+TGG | - | 51768:35397-35416 | MS.gene072569:intron | 40.0% | |
| TGGTCTGCAAATAGACAAAC+TGG | - | 51768:35551-35570 | MS.gene072569:CDS | 40.0% | |
| TGTCACACACTGATATGTGT+CGG | - | 51768:32913-32932 | MS.gene072569:CDS | 40.0% | |
| TGTCTTTCCCACATTTCAAG+TGG | - | 51768:35500-35519 | MS.gene072569:CDS | 40.0% | |
| TTACATCAGCTACCCTACAA+AGG | + | 51768:32738-32757 | None:intergenic | 40.0% | |
| TTAGTTATCCCCCTACTCTT+TGG | + | 51768:34367-34386 | None:intergenic | 40.0% | |
| TTGATCGCTCCATTTGTAAC+TGG | - | 51768:32494-32513 | MS.gene072569:CDS | 40.0% | |
| TTGGTTACTGTATAACCTGC+TGG | - | 51768:34146-34165 | MS.gene072569:intron | 40.0% | |
| TTGTGTTAGATTTCGGCCTT+GGG | - | 51768:34825-34844 | MS.gene072569:intron | 40.0% | |
| ! | AAAGCTTTATCCCACTGAGT+AGG | + | 51768:34083-34102 | None:intergenic | 40.0% |
| ! | AAAGTCTTAAGCGTTGTGAC+TGG | - | 51768:33576-33595 | MS.gene072569:intron | 40.0% |
| ! | AAGCTTTATCCCACTGAGTA+GGG | + | 51768:34082-34101 | None:intergenic | 40.0% |
| ! | CCGATTGTTATTGTTGTGGA+CGG | + | 51768:33282-33301 | None:intergenic | 40.0% |
| ! | CTTGTAGTCATTGTGCCATT+TGG | - | 51768:33180-33199 | MS.gene072569:intron | 40.0% |
| ! | GTGTCCGATTGTTATTGTTG+TGG | + | 51768:33286-33305 | None:intergenic | 40.0% |
| !! | CCACATTTCAAGTGGCTTTT+AGG | - | 51768:35508-35527 | MS.gene072569:CDS | 40.0% |
| !! | CTTCAATCCTTGATGATGTG+AGG | - | 51768:34794-34813 | MS.gene072569:intron | 40.0% |
| !! | GCTCCATTTGTAACTGGTTT+TGG | - | 51768:32500-32519 | MS.gene072569:CDS | 40.0% |
| !! | GGGCTTGACTTTGTTTCTTT+TGG | - | 51768:33201-33220 | MS.gene072569:CDS | 40.0% |
| !!! | CAAGTGGCTTTTAGGATCAT+GGG | - | 51768:35516-35535 | MS.gene072569:CDS | 40.0% |
| !!! | CTTTTGCTGACTTACTGAAC+AGG | - | 51768:34514-34533 | MS.gene072569:CDS | 40.0% |
| !!! | TCAAGTGGCTTTTAGGATCA+TGG | - | 51768:35515-35534 | MS.gene072569:CDS | 40.0% |
| !!! | TCGCGATGGAATCACTTTTT+TGG | - | 51768:32591-32610 | MS.gene072569:CDS | 40.0% |
| AATCAGGTAGACCAGTGATG+TGG | + | 51768:34753-34772 | None:intergenic | 45.0% | |
| ACGGAATCAACTGTCTTTCC+AGG | + | 51768:35163-35182 | None:intergenic | 45.0% | |
| ATAAATGGCAAGGTACGCAG+CGG | - | 51768:34330-34349 | MS.gene072569:intron | 45.0% | |
| ATCAGGTAGACCAGTGATGT+GGG | + | 51768:34752-34771 | None:intergenic | 45.0% | |
| ATGAGGAGGAGATGACAGAT+AGG | + | 51768:33244-33263 | None:intergenic | 45.0% | |
| CAAGGCCGAAATCTAACACA+AGG | + | 51768:34826-34845 | None:intergenic | 45.0% | |
| CTTCAGATTGAAGGTGAGAC+TGG | + | 51768:33308-33327 | None:intergenic | 45.0% | |
| CTTGTGTTAGATTTCGGCCT+TGG | - | 51768:34824-34843 | MS.gene072569:intron | 45.0% | |
| CTTTCATTTGTGCCTCCTGA+TGG | - | 51768:34862-34881 | MS.gene072569:intron | 45.0% | |
| GACTTCAAATTCACCTGCTC+GGG | + | 51768:35625-35644 | None:intergenic | 45.0% | |
| GCTGATCTGACTTCAACTCA+TGG | - | 51768:35220-35239 | MS.gene072569:intron | 45.0% | |
| GGAACATTAGTGCTTGAGAC+TGG | - | 51768:35462-35481 | MS.gene072569:CDS | 45.0% | |
| GTACCCTACCGTTTCTACAA+AGG | - | 51768:35585-35604 | MS.gene072569:CDS | 45.0% | |
| GTTGGCATGAGAAATGATCC+TGG | - | 51768:35142-35161 | MS.gene072569:intron | 45.0% | |
| TCAGCTGATAAGATGCAAGG+AGG | + | 51768:35205-35224 | None:intergenic | 45.0% | |
| TGAAAATGTTGCCTGAGTGC+TGG | - | 51768:33386-33405 | MS.gene072569:CDS | 45.0% | |
| TGTACCAACCAAAGAGTAGG+GGG | - | 51768:34356-34375 | MS.gene072569:intron | 45.0% | |
| TTAGTCCTGCTATGCATAGC+AGG | - | 51768:33955-33974 | MS.gene072569:intron | 45.0% | |
| TTAGTGCCAACCCAGATTAG+AGG | + | 51768:34182-34201 | None:intergenic | 45.0% | |
| TTATCCCCCTACTCTTTGGT+TGG | + | 51768:34363-34382 | None:intergenic | 45.0% | |
| TTCATTCAGGGATGGTACTC+TGG | - | 51768:34690-34709 | MS.gene072569:intron | 45.0% | |
| TTTATCCCACTGAGTAGGGT+CGG | + | 51768:34078-34097 | None:intergenic | 45.0% | |
| TTTGCACCTCTAATCTGGGT+TGG | - | 51768:34173-34192 | MS.gene072569:intron | 45.0% | |
| ! | AAGCCACAGTTGACTTCAGA+TGG | - | 51768:35094-35113 | MS.gene072569:intron | 45.0% |
| ! | ACTGATATGTGTCGGTGCAA+TGG | - | 51768:32921-32940 | MS.gene072569:CDS | 45.0% |
| ! | AGAGGTGCAAAAATACCAGC+AGG | + | 51768:34164-34183 | None:intergenic | 45.0% |
| ! | ATTGAGGGGGCTTTATCCTT+TGG | + | 51768:35438-35457 | None:intergenic | 45.0% |
| ! | CACAGTTGACTTCAGATGGT+GGG | - | 51768:35098-35117 | MS.gene072569:intron | 45.0% |
| ! | GAGCAGGTGAATTTGAAGTC+AGG | - | 51768:35625-35644 | MS.gene072569:CDS | 45.0% |
| ! | GGTTGTTGCTTGAAGGAATG+AGG | + | 51768:32532-32551 | None:intergenic | 45.0% |
| ! | TCGACTTCGGTTCCTTTTCA+AGG | - | 51768:33906-33925 | MS.gene072569:intron | 45.0% |
| ! | TTGAGGGGGCTTTATCCTTT+GGG | + | 51768:35437-35456 | None:intergenic | 45.0% |
| !! | ACTTCGGTTCCTTTTCAAGG+AGG | - | 51768:33909-33928 | MS.gene072569:intron | 45.0% |
| !! | TGGGTTGGTGAAGCAATAAC+AGG | + | 51768:32553-32572 | None:intergenic | 45.0% |
| !!! | ATTCATTTATTTTTAAATTA+TGG | - | 51768:33791-33810 | MS.gene072569:intron | 5.0% |
| !!! | ATTTTAAGAAAATAAAAATT+TGG | + | 51768:35014-35033 | None:intergenic | 5.0% |
| !!! | TTTTAAGAAAATAAAAATTT+GGG | + | 51768:35013-35032 | None:intergenic | 5.0% |
| AATAGCCGACCCTACTCAGT+GGG | - | 51768:34070-34089 | MS.gene072569:intron | 50.0% | |
| ACACAAGATGCTGTACTGCC+TGG | + | 51768:33630-33649 | None:intergenic | 50.0% | |
| ACCTCAATGGCCATCAAAGG+TGG | + | 51768:32637-32656 | None:intergenic | 50.0% | |
| AGGTCCCAAGCTCGGATATA+AGG | - | 51768:33975-33994 | MS.gene072569:intron | 50.0% | |
| CAGACATGCACTTGGTCCAT+TGG | - | 51768:35405-35424 | MS.gene072569:intron | 50.0% | |
| CTTGTTCGCAACAGCATAGG+AGG | - | 51768:33080-33099 | MS.gene072569:intron | 50.0% | |
| GATAAAGCCCCCTCAATGTC+TGG | - | 51768:35441-35460 | MS.gene072569:intron | 50.0% | |
| GCACTTGTTCGCAACAGCAT+AGG | - | 51768:33077-33096 | MS.gene072569:intron | 50.0% | |
| GCCGAAATCTAACACAAGGG+TGG | + | 51768:34822-34841 | None:intergenic | 50.0% | |
| GGTGGAACCTCACATCATCA+AGG | + | 51768:34804-34823 | None:intergenic | 50.0% | |
| GTACAGCATCTTGTGTTCCC+TGG | - | 51768:33634-33653 | MS.gene072569:intron | 50.0% | |
| TAATAGCCGACCCTACTCAG+TGG | - | 51768:34069-34088 | MS.gene072569:intron | 50.0% | |
| TGTCAGCTGCGGTATTGTGT+AGG | - | 51768:32890-32909 | MS.gene072569:CDS | 50.0% | |
| ! | CCACAGTTGACTTCAGATGG+TGG | - | 51768:35097-35116 | MS.gene072569:intron | 50.0% |
| ! | CCACCATCTGAAGTCAACTG+TGG | + | 51768:35100-35119 | None:intergenic | 50.0% |
| !! | GGGCTTTATCCTTTGGGATC+CGG | + | 51768:35431-35450 | None:intergenic | 50.0% |
| !! | TATTGGGTTGGTGTCAGCTG+CGG | - | 51768:32879-32898 | MS.gene072569:CDS | 50.0% |
| AATGTGAGCGACACGCTTCC+AGG | - | 51768:33609-33628 | MS.gene072569:intron | 55.0% | |
| AGAAAAGCCTGCCAGCACTC+AGG | + | 51768:33400-33419 | None:intergenic | 55.0% | |
| CATGCACTTGGTCCATTGGC+CGG | - | 51768:35409-35428 | MS.gene072569:intron | 55.0% | |
| GCGGAGCTATCATCTCTTGC+AGG | + | 51768:33542-33561 | None:intergenic | 55.0% | |
| TGCATAGCAGGTCCCAAGCT+CGG | - | 51768:33967-33986 | MS.gene072569:intron | 55.0% | |
| TGGGACCTGCTATGCATAGC+AGG | + | 51768:33963-33982 | None:intergenic | 55.0% | |
| TTAGGGTCGGCTGTTCTCCA+GGG | + | 51768:33654-33673 | None:intergenic | 55.0% | |
| TTTCGAGCTCTTACCCGAGC+AGG | - | 51768:35609-35628 | MS.gene072569:CDS | 55.0% | |
| ! | GCCACCTTTGATGGCCATTG+AGG | - | 51768:32633-32652 | MS.gene072569:CDS | 55.0% |
| ! | TGTGTCGGTGCAATGGTCGT+TGG | - | 51768:32928-32947 | MS.gene072569:CDS | 55.0% |
| !! | AATGTTGCCTGAGTGCTGGC+AGG | - | 51768:33390-33409 | MS.gene072569:CDS | 55.0% |
| !! | ATCATGGGTGTCGCTCTCTC+TGG | - | 51768:35531-35550 | MS.gene072569:CDS | 55.0% |
| !! | ATCCTTTGGGATCCGGCCAA+TGG | + | 51768:35424-35443 | None:intergenic | 55.0% |
| CTTAGGGTCGGCTGTTCTCC+AGG | + | 51768:33655-33674 | None:intergenic | 60.0% | |
| GTCCATTGGCCGGATCCCAA+AGG | - | 51768:35419-35438 | MS.gene072569:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51768 | gene | 32456 | 35653 | 32456 | ID=MS.gene072569 |
| 51768 | mRNA | 32456 | 35653 | 32456 | ID=MS.gene072569.t1;Parent=MS.gene072569 |
| 51768 | exon | 35455 | 35653 | 35455 | ID=MS.gene072569.t1.exon1;Parent=MS.gene072569.t1 |
| 51768 | CDS | 35455 | 35653 | 35455 | ID=cds.MS.gene072569.t1;Parent=MS.gene072569.t1 |
| 51768 | exon | 35287 | 35376 | 35287 | ID=MS.gene072569.t1.exon2;Parent=MS.gene072569.t1 |
| 51768 | CDS | 35287 | 35376 | 35287 | ID=cds.MS.gene072569.t1;Parent=MS.gene072569.t1 |
| 51768 | exon | 34376 | 34623 | 34376 | ID=MS.gene072569.t1.exon3;Parent=MS.gene072569.t1 |
| 51768 | CDS | 34376 | 34623 | 34376 | ID=cds.MS.gene072569.t1;Parent=MS.gene072569.t1 |
| 51768 | exon | 33201 | 33410 | 33201 | ID=MS.gene072569.t1.exon4;Parent=MS.gene072569.t1 |
| 51768 | CDS | 33201 | 33410 | 33201 | ID=cds.MS.gene072569.t1;Parent=MS.gene072569.t1 |
| 51768 | exon | 32842 | 33049 | 32842 | ID=MS.gene072569.t1.exon5;Parent=MS.gene072569.t1 |
| 51768 | CDS | 32842 | 33049 | 32842 | ID=cds.MS.gene072569.t1;Parent=MS.gene072569.t1 |
| 51768 | exon | 32456 | 32701 | 32456 | ID=MS.gene072569.t1.exon6;Parent=MS.gene072569.t1 |
| 51768 | CDS | 32456 | 32701 | 32456 | ID=cds.MS.gene072569.t1;Parent=MS.gene072569.t1 |
| Gene Sequence |
| Protein sequence |
