Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072592.t1 | XP_003626148.1 | 99.4 | 638 | 4 | 0 | 1 | 638 | 1 | 638 | 0.00E+00 | 1194.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072592.t1 | Q8BJ34 | 28.4 | 155 | 108 | 2 | 15 | 168 | 348 | 500 | 4.3e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072592.t1 | G7KWF4 | 99.4 | 638 | 4 | 0 | 1 | 638 | 1 | 638 | 0.0e+00 | 1194.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049876 | MS.gene072592 | -0.815749 | 7.88E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072592.t1 | MTR_7g111570 | 99.373 | 638 | 4 | 0 | 1 | 638 | 1 | 638 | 0.0 | 1305 |
| MS.gene072592.t1 | MTR_7g110390 | 75.776 | 161 | 38 | 1 | 12 | 171 | 6 | 166 | 5.88e-78 | 256 |
| MS.gene072592.t1 | MTR_7g110390 | 50.000 | 172 | 86 | 0 | 461 | 632 | 292 | 463 | 8.49e-47 | 172 |
| MS.gene072592.t1 | MTR_3g050240 | 48.101 | 158 | 78 | 3 | 19 | 175 | 174 | 328 | 1.35e-38 | 149 |
| MS.gene072592.t1 | MTR_3g050240 | 44.667 | 150 | 79 | 2 | 17 | 164 | 8 | 155 | 2.18e-25 | 110 |
| MS.gene072592.t1 | MTR_3g095410 | 46.980 | 149 | 79 | 0 | 17 | 165 | 55 | 203 | 4.21e-38 | 152 |
| MS.gene072592.t1 | MTR_7g108660 | 41.860 | 172 | 78 | 2 | 461 | 631 | 100 | 250 | 1.74e-31 | 123 |
| MS.gene072592.t1 | MTR_1g023460 | 43.195 | 169 | 86 | 4 | 11 | 170 | 2 | 169 | 3.99e-31 | 120 |
| MS.gene072592.t1 | MTR_4g085820 | 48.246 | 114 | 57 | 2 | 19 | 130 | 48 | 161 | 1.05e-22 | 102 |
| MS.gene072592.t1 | MTR_8g011120 | 37.037 | 162 | 82 | 5 | 18 | 165 | 33 | 188 | 1.20e-20 | 96.7 |
| MS.gene072592.t1 | MTR_8g011570 | 35.443 | 158 | 82 | 4 | 22 | 165 | 35 | 186 | 1.55e-18 | 90.1 |
| MS.gene072592.t1 | MTR_7g077430 | 35.570 | 149 | 88 | 4 | 17 | 165 | 470 | 610 | 3.14e-18 | 89.7 |
| MS.gene072592.t1 | MTR_7g077430 | 38.136 | 118 | 66 | 3 | 54 | 165 | 2 | 118 | 9.96e-12 | 68.6 |
| MS.gene072592.t1 | MTR_4g098990 | 35.404 | 161 | 85 | 4 | 19 | 165 | 40 | 195 | 6.21e-18 | 87.8 |
| MS.gene072592.t1 | MTR_3g095410 | 54.688 | 64 | 29 | 0 | 102 | 165 | 1 | 64 | 4.79e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072592.t1 | AT5G61190 | 58.462 | 260 | 81 | 5 | 8 | 265 | 2 | 236 | 1.85e-87 | 288 |
| MS.gene072592.t1 | AT5G61190 | 58.462 | 260 | 81 | 5 | 8 | 265 | 2 | 236 | 1.85e-87 | 288 |
| MS.gene072592.t1 | AT3G62200 | 79.762 | 168 | 34 | 0 | 10 | 177 | 21 | 188 | 3.03e-87 | 286 |
| MS.gene072592.t1 | AT5G61190 | 58.462 | 260 | 81 | 5 | 8 | 265 | 2 | 236 | 1.12e-86 | 289 |
| MS.gene072592.t1 | AT5G61190 | 58.462 | 260 | 81 | 5 | 8 | 265 | 2 | 236 | 5.06e-86 | 289 |
| MS.gene072592.t1 | AT5G61190 | 69.307 | 202 | 60 | 2 | 8 | 207 | 2 | 203 | 5.66e-86 | 290 |
| MS.gene072592.t1 | AT5G61190 | 69.307 | 202 | 60 | 2 | 8 | 207 | 2 | 203 | 8.40e-86 | 289 |
| MS.gene072592.t1 | AT5G61190 | 58.462 | 260 | 81 | 5 | 8 | 265 | 2 | 236 | 1.61e-85 | 289 |
| MS.gene072592.t1 | AT5G61190 | 58.462 | 260 | 81 | 5 | 8 | 265 | 2 | 236 | 1.63e-85 | 289 |
| MS.gene072592.t1 | AT5G61190 | 69.307 | 202 | 60 | 2 | 8 | 207 | 2 | 203 | 1.77e-85 | 289 |
| MS.gene072592.t1 | AT3G62210 | 73.333 | 180 | 45 | 1 | 5 | 181 | 10 | 189 | 1.82e-85 | 269 |
| MS.gene072592.t1 | AT5G61180 | 60.674 | 178 | 52 | 1 | 9 | 168 | 72 | 249 | 1.22e-69 | 231 |
| MS.gene072592.t1 | AT3G61028 | 45.181 | 166 | 88 | 3 | 15 | 177 | 78 | 243 | 1.93e-43 | 157 |
| MS.gene072592.t1 | AT3G61028 | 45.181 | 166 | 88 | 3 | 15 | 177 | 78 | 243 | 1.93e-43 | 157 |
| MS.gene072592.t1 | AT3G60940 | 47.429 | 175 | 83 | 3 | 12 | 177 | 76 | 250 | 3.82e-43 | 156 |
| MS.gene072592.t1 | AT3G60940 | 47.429 | 175 | 83 | 3 | 12 | 177 | 76 | 250 | 3.82e-43 | 156 |
| MS.gene072592.t1 | AT5G64710 | 42.138 | 159 | 91 | 1 | 11 | 168 | 54 | 212 | 1.17e-37 | 150 |
| MS.gene072592.t1 | AT5G09840 | 41.935 | 155 | 90 | 0 | 11 | 165 | 65 | 219 | 2.82e-37 | 149 |
| MS.gene072592.t1 | AT5G61190 | 66.055 | 109 | 35 | 2 | 101 | 207 | 1 | 109 | 2.18e-35 | 143 |
| MS.gene072592.t1 | AT5G61190 | 66.055 | 109 | 35 | 2 | 101 | 207 | 1 | 109 | 2.18e-35 | 143 |
| MS.gene072592.t1 | AT2G15560 | 41.290 | 155 | 87 | 3 | 15 | 165 | 46 | 200 | 4.52e-27 | 115 |
| MS.gene072592.t1 | AT2G15560 | 41.290 | 155 | 87 | 3 | 15 | 165 | 46 | 200 | 4.93e-27 | 115 |
| MS.gene072592.t1 | AT3G62850 | 30.841 | 214 | 131 | 6 | 9 | 211 | 230 | 437 | 6.83e-22 | 99.8 |
| MS.gene072592.t1 | AT3G62850 | 31.210 | 157 | 102 | 2 | 10 | 163 | 7 | 160 | 3.55e-18 | 88.2 |
| MS.gene072592.t1 | AT3G61028 | 40.517 | 116 | 67 | 2 | 15 | 128 | 78 | 193 | 1.07e-21 | 95.5 |
| MS.gene072592.t1 | AT3G62050 | 36.434 | 129 | 73 | 3 | 14 | 139 | 9 | 131 | 4.27e-20 | 88.2 |
| MS.gene072592.t1 | AT5G35640 | 31.111 | 135 | 88 | 2 | 17 | 147 | 32 | 165 | 7.26e-15 | 73.9 |
| MS.gene072592.t1 | AT3G61090 | 29.480 | 173 | 106 | 5 | 18 | 180 | 12 | 178 | 2.13e-14 | 72.4 |
| MS.gene072592.t1 | AT5G64710 | 41.463 | 82 | 47 | 1 | 88 | 168 | 6 | 87 | 3.63e-14 | 76.3 |
| MS.gene072592.t1 | AT3G62460 | 29.927 | 137 | 88 | 3 | 18 | 149 | 58 | 191 | 6.51e-12 | 65.5 |
| MS.gene072592.t1 | AT1G01355 | 32.450 | 151 | 96 | 3 | 28 | 174 | 11 | 159 | 1.38e-11 | 65.1 |
| MS.gene072592.t1 | AT3G56730 | 33.019 | 106 | 65 | 1 | 15 | 120 | 7 | 106 | 2.52e-11 | 63.2 |
| MS.gene072592.t1 | AT3G61100 | 28.485 | 165 | 98 | 5 | 18 | 170 | 8 | 164 | 2.93e-11 | 62.8 |
| MS.gene072592.t1 | AT3G56730 | 30.357 | 112 | 72 | 1 | 9 | 120 | 9 | 114 | 3.82e-11 | 62.8 |
| MS.gene072592.t1 | AT3G56730 | 30.357 | 112 | 72 | 1 | 9 | 120 | 9 | 114 | 3.82e-11 | 62.8 |
| MS.gene072592.t1 | AT1G01355 | 31.788 | 151 | 93 | 3 | 28 | 174 | 11 | 155 | 4.29e-11 | 63.5 |
| MS.gene072592.t1 | AT3G56730 | 32.692 | 104 | 64 | 1 | 17 | 120 | 11 | 108 | 8.31e-11 | 61.6 |
| MS.gene072592.t1 | AT5G64450 | 35.000 | 120 | 64 | 6 | 52 | 162 | 34 | 148 | 9.06e-11 | 61.6 |
Find 0 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATTGTTTACATTATTA+CGG | - | 50590:8343-8362 | None:intergenic | 15.0% |
| !!! | ATGAATATAGTCTATTTTAT+TGG | - | 50590:9343-9362 | None:intergenic | 15.0% |
| !!! | ATGAATTATCCATTTTTTAT+GGG | - | 50590:9501-9520 | None:intergenic | 15.0% |
| !!! | GATGAATTATCCATTTTTTA+TGG | - | 50590:9502-9521 | None:intergenic | 20.0% |
| !!! | TGCGAATTATTTATTGATTT+CGG | + | 50590:7908-7927 | MS.gene072592:CDS | 20.0% |
| !!! | TTGAATTTTTTCTCAGTATA+AGG | + | 50590:7185-7204 | MS.gene072592:intron | 20.0% |
| ! | AACATGATTAAGTGAAATTC+CGG | - | 50590:6923-6942 | None:intergenic | 25.0% |
| ! | AATAATAAACTTCCCTCTAA+TGG | + | 50590:8899-8918 | MS.gene072592:CDS | 25.0% |
| ! | ATGGTGGTAAAACAAAATTT+AGG | + | 50590:9124-9143 | MS.gene072592:CDS | 25.0% |
| ! | GAAATCAATAAATAATTCGC+AGG | - | 50590:7909-7928 | None:intergenic | 25.0% |
| ! | GGAAATTCAAATGTTCAAAA+CGG | + | 50590:8209-8228 | MS.gene072592:CDS | 25.0% |
| ! | TGTTGAACAGTTAATACATT+TGG | + | 50590:7707-7726 | MS.gene072592:intron | 25.0% |
| ! | TTATCAAAATTACACCTCAA+AGG | - | 50590:7567-7586 | None:intergenic | 25.0% |
| ! | TTTGGAGAATATGAATTACT+AGG | - | 50590:8578-8597 | None:intergenic | 25.0% |
| !! | TGTTGATTGAAAGATAGATT+TGG | + | 50590:7644-7663 | MS.gene072592:intron | 25.0% |
| !! | TTCATTTCTGTGATTGATTT+GGG | + | 50590:7075-7094 | MS.gene072592:intron | 25.0% |
| !!! | AATTTCACACTATTGATTTG+TGG | - | 50590:7766-7785 | None:intergenic | 25.0% |
| !!! | ATGGTTTTAAATTGTGATTG+CGG | + | 50590:7224-7243 | MS.gene072592:intron | 25.0% |
| !!! | CTTTTTTCATGTTTGGTTAT+AGG | + | 50590:7816-7835 | MS.gene072592:intron | 25.0% |
| !!! | GAGGTGTAATTTTGATAATT+TGG | + | 50590:7569-7588 | MS.gene072592:intron | 25.0% |
| !!! | GCGAATTATTTATTGATTTC+GGG | + | 50590:7909-7928 | MS.gene072592:CDS | 25.0% |
| !!! | GTGTGAAATTTTGATACATT+TGG | + | 50590:7776-7795 | MS.gene072592:intron | 25.0% |
| !!! | TGAATCTATTCTATTTCTGT+AGG | + | 50590:9390-9409 | MS.gene072592:intron | 25.0% |
| !!! | TGTTTTAAAGATCTTGCTTT+GGG | + | 50590:9443-9462 | MS.gene072592:CDS | 25.0% |
| AAACCTTCTGAATATGTACA+AGG | + | 50590:8947-8966 | MS.gene072592:CDS | 30.0% | |
| AATGTAAACAATTATCGACC+TGG | + | 50590:8347-8366 | MS.gene072592:CDS | 30.0% | |
| AATTCAAATGTTCAAAACGG+AGG | + | 50590:8212-8231 | MS.gene072592:CDS | 30.0% | |
| AATTTCGTCCCAAATTTCTT+TGG | - | 50590:9230-9249 | None:intergenic | 30.0% | |
| ACTTGTATAGTTTCAGAAGA+CGG | - | 50590:8128-8147 | None:intergenic | 30.0% | |
| AGAATAGATTCATCAGAATG+CGG | - | 50590:9382-9401 | None:intergenic | 30.0% | |
| AGATCAACGAATGAACAAAA+TGG | + | 50590:8797-8816 | MS.gene072592:CDS | 30.0% | |
| AGCAATAATGGTAATCAACA+AGG | + | 50590:8443-8462 | MS.gene072592:CDS | 30.0% | |
| AGCTATGATTTATGAACTGT+CGG | + | 50590:6996-7015 | MS.gene072592:intron | 30.0% | |
| AGGAAATCATCAAAATCAAC+AGG | + | 50590:8463-8482 | MS.gene072592:CDS | 30.0% | |
| ATATCTGGTTATCCCAATAA+TGG | + | 50590:8698-8717 | MS.gene072592:CDS | 30.0% | |
| ATCACGTGATAAATAAGTCA+GGG | - | 50590:7349-7368 | None:intergenic | 30.0% | |
| CAAGTAAAACAACACCTATA+AGG | - | 50590:8973-8992 | None:intergenic | 30.0% | |
| GAAATCATCAAAATCAACAG+GGG | + | 50590:8465-8484 | MS.gene072592:CDS | 30.0% | |
| GAATGAACAAAATGGACATA+TGG | + | 50590:8805-8824 | MS.gene072592:CDS | 30.0% | |
| GGAAATCATCAAAATCAACA+GGG | + | 50590:8464-8483 | MS.gene072592:CDS | 30.0% | |
| GGATTTGATTCTAGATATCA+GGG | + | 50590:8239-8258 | MS.gene072592:CDS | 30.0% | |
| GTTCATTTCTGTGATTGATT+TGG | + | 50590:7074-7093 | MS.gene072592:intron | 30.0% | |
| TATGAATTACTAGGTGCAAA+AGG | - | 50590:8569-8588 | None:intergenic | 30.0% | |
| TCAGTTATATTCTTCTCAGT+TGG | - | 50590:9028-9047 | None:intergenic | 30.0% | |
| TGGTGATAACCCATAAAAAA+TGG | + | 50590:9489-9508 | MS.gene072592:CDS | 30.0% | |
| TGTACATATTCAGAAGGTTT+AGG | - | 50590:8947-8966 | None:intergenic | 30.0% | |
| TTACCATTATTGCTCCATAA+TGG | - | 50590:8437-8456 | None:intergenic | 30.0% | |
| TTTCACACAATCAATCAACA+CGG | - | 50590:7602-7621 | None:intergenic | 30.0% | |
| ! | GGTATTAAGAATCTGATTTG+TGG | + | 50590:7396-7415 | MS.gene072592:intron | 30.0% |
| !!! | ATTGATTTGGGTATTTTACG+CGG | + | 50590:7087-7106 | MS.gene072592:intron | 30.0% |
| !!! | GTGTTTTAAAGATCTTGCTT+TGG | + | 50590:9442-9461 | MS.gene072592:CDS | 30.0% |
| AAATGTTCAAAACGGAGGAA+GGG | + | 50590:8217-8236 | MS.gene072592:CDS | 35.0% | |
| AACAGCACTCCAAAGAAATT+TGG | + | 50590:9218-9237 | MS.gene072592:CDS | 35.0% | |
| AATAAATAATTCGCAGGTGC+AGG | - | 50590:7903-7922 | None:intergenic | 35.0% | |
| AATAGATTCATCAGAATGCG+GGG | - | 50590:9380-9399 | None:intergenic | 35.0% | |
| AATCCAAATGTTCCTCAAAG+TGG | + | 50590:8377-8396 | MS.gene072592:CDS | 35.0% | |
| AATCGAAGTAAGTTCGTTAC+CGG | - | 50590:6950-6969 | None:intergenic | 35.0% | |
| ACAGCACTCCAAAGAAATTT+GGG | + | 50590:9219-9238 | MS.gene072592:CDS | 35.0% | |
| ACATTTGGATTATAGTTGCC+AGG | - | 50590:8368-8387 | None:intergenic | 35.0% | |
| ATAAATAATTCGCAGGTGCA+GGG | - | 50590:7902-7921 | None:intergenic | 35.0% | |
| ATAACTGATAGCATCCGTTA+TGG | + | 50590:9040-9059 | MS.gene072592:CDS | 35.0% | |
| ATGTTCAGATTGCCAATATC+TGG | - | 50590:8680-8699 | None:intergenic | 35.0% | |
| ATTGGCAATCTGAACATATC+TGG | + | 50590:8683-8702 | MS.gene072592:CDS | 35.0% | |
| CACAGTTTGTACTGTCTATA+TGG | + | 50590:7375-7394 | MS.gene072592:intron | 35.0% | |
| CATCACGTGATAAATAAGTC+AGG | - | 50590:7350-7369 | None:intergenic | 35.0% | |
| CCAGCATGAATTTCAGAATA+GGG | - | 50590:8191-8210 | None:intergenic | 35.0% | |
| CTTGTTCGTATGAACTATTG+TGG | + | 50590:6826-6845 | MS.gene072592:CDS | 35.0% | |
| GAAAACTGTCATGTTCCTAA+AGG | + | 50590:6763-6782 | MS.gene072592:CDS | 35.0% | |
| GAATAGATTCATCAGAATGC+GGG | - | 50590:9381-9400 | None:intergenic | 35.0% | |
| GACTTATTTATCACGTGATG+CGG | + | 50590:7350-7369 | MS.gene072592:intron | 35.0% | |
| GATCCATTATGGAGCAATAA+TGG | + | 50590:8431-8450 | MS.gene072592:CDS | 35.0% | |
| GGGAAATCATCAAAATCAAC+AGG | + | 50590:8484-8503 | MS.gene072592:CDS | 35.0% | |
| GGGATTTGATTCTAGATATC+AGG | + | 50590:8238-8257 | MS.gene072592:CDS | 35.0% | |
| TATTGTGATAGCTGATACTG+TGG | + | 50590:7263-7282 | MS.gene072592:intron | 35.0% | |
| TCACCATGTTCAATATCTGA+AGG | - | 50590:9475-9494 | None:intergenic | 35.0% | |
| TCCAGCATGAATTTCAGAAT+AGG | - | 50590:8192-8211 | None:intergenic | 35.0% | |
| TGGTTCACTTGAAACATTCA+CGG | + | 50590:7664-7683 | MS.gene072592:intron | 35.0% | |
| TGTCCTTCAGATATTGAACA+TGG | + | 50590:9469-9488 | MS.gene072592:CDS | 35.0% | |
| TGTTCATTCGTTGATCTTAC+CGG | - | 50590:8794-8813 | None:intergenic | 35.0% | |
| TTGGTAAGAATGACAAACTC+TGG | + | 50590:9164-9183 | MS.gene072592:CDS | 35.0% | |
| ! | GAATATGTACAAGGCCTTAT+AGG | + | 50590:8956-8975 | MS.gene072592:CDS | 35.0% |
| ! | GTTGCAAAAGTATGGGAATT+TGG | - | 50590:8596-8615 | None:intergenic | 35.0% |
| ! | TATTTCTGTAGGTATGAAGC+AGG | + | 50590:9401-9420 | MS.gene072592:intron | 35.0% |
| ! | TGTTTAGGATTTCCACCTAA+GGG | - | 50590:9202-9221 | None:intergenic | 35.0% |
| !! | AAACATTCACGGTTGATTTG+TGG | + | 50590:7675-7694 | MS.gene072592:intron | 35.0% |
| !! | AGGTGATTTGATTTGAAGCA+TGG | + | 50590:7205-7224 | MS.gene072592:intron | 35.0% |
| !! | ATTTCTTTGGAGTGCTGTTT+AGG | - | 50590:9217-9236 | None:intergenic | 35.0% |
| !!! | GCTGAAGCTTTTTTCATGTT+TGG | + | 50590:7809-7828 | MS.gene072592:intron | 35.0% |
| !!! | GGCATTTTTTAGTGAGTTCA+GGG | - | 50590:8996-9015 | None:intergenic | 35.0% |
| !!! | TGGCATTTTTTAGTGAGTTC+AGG | - | 50590:8997-9016 | None:intergenic | 35.0% |
| AAATTGTTGCCAACAGTCCT+AGG | - | 50590:8632-8651 | None:intergenic | 40.0% | |
| AACTTCCCTCTAATGGTAAG+TGG | + | 50590:8906-8925 | MS.gene072592:CDS | 40.0% | |
| AAGTGTGTAAATCCCTTAGG+TGG | + | 50590:9187-9206 | MS.gene072592:CDS | 40.0% | |
| AATGTTCAAAACGGAGGAAG+GGG | + | 50590:8218-8237 | MS.gene072592:CDS | 40.0% | |
| ACTTCCCTCTAATGGTAAGT+GGG | + | 50590:8907-8926 | MS.gene072592:CDS | 40.0% | |
| ATATTCTGCGCAATTGCATG+TGG | - | 50590:6796-6815 | None:intergenic | 40.0% | |
| CAAATGTTCAAAACGGAGGA+AGG | + | 50590:8216-8235 | MS.gene072592:CDS | 40.0% | |
| CTCCAGAGCTTTCTTAACAT+CGG | - | 50590:9086-9105 | None:intergenic | 40.0% | |
| GAATTACTAGGTGCAAAAGG+AGG | - | 50590:8566-8585 | None:intergenic | 40.0% | |
| GGTTATCTTGAAGTCCAACT+GGG | - | 50590:8322-8341 | None:intergenic | 40.0% | |
| GTTATCTTGAAGTCCAACTG+GGG | - | 50590:8321-8340 | None:intergenic | 40.0% | |
| GTTGGCAACAATTTCAGTAC+AGG | + | 50590:8638-8657 | MS.gene072592:CDS | 40.0% | |
| TGGATAATTCATCAGCAGTC+TGG | + | 50590:9509-9528 | MS.gene072592:CDS | 40.0% | |
| TTATCTTGAAGTCCAACTGG+GGG | - | 50590:8320-8339 | None:intergenic | 40.0% | |
| TTTGTGGTTGATCCACTTTG+AGG | - | 50590:8392-8411 | None:intergenic | 40.0% | |
| ! | AATTTTCTAACAACCCCTGC+TGG | + | 50590:9253-9272 | MS.gene072592:CDS | 40.0% |
| ! | AGAATGCGGGGATATCTTTT+AGG | - | 50590:9368-9387 | None:intergenic | 40.0% |
| ! | AGGCCTTGTACATATTCAGA+AGG | - | 50590:8953-8972 | None:intergenic | 40.0% |
| ! | CCATACTTTTGCAACTACAC+CGG | + | 50590:8601-8620 | MS.gene072592:CDS | 40.0% |
| ! | CGGTGTAGTTGCAAAAGTAT+GGG | - | 50590:8603-8622 | None:intergenic | 40.0% |
| ! | CTGTTTAGGATTTCCACCTA+AGG | - | 50590:9203-9222 | None:intergenic | 40.0% |
| ! | GATCCACTTTGAGGAACATT+TGG | - | 50590:8383-8402 | None:intergenic | 40.0% |
| ! | TGGAAGTGTGTAAATCCCTT+AGG | + | 50590:9184-9203 | MS.gene072592:CDS | 40.0% |
| !! | CCCTATTCTGAAATTCATGC+TGG | + | 50590:8188-8207 | MS.gene072592:CDS | 40.0% |
| !! | GAGTGTGTAGGTTGATATTC+TGG | - | 50590:8866-8885 | None:intergenic | 40.0% |
| !! | GCTCCATAATGGATCAGAAT+TGG | - | 50590:8426-8445 | None:intergenic | 40.0% |
| !! | GGAAAACCGTTTGGTCTTAA+TGG | - | 50590:8536-8555 | None:intergenic | 40.0% |
| AATGGTAAGTGGGGATCTTC+AGG | + | 50590:8917-8936 | MS.gene072592:CDS | 45.0% | |
| ACACCTCAAAGGCTCAAGAA+AGG | - | 50590:7556-7575 | None:intergenic | 45.0% | |
| AGAAACCCGAGTCAACCAAA+TGG | + | 50590:8275-8294 | MS.gene072592:CDS | 45.0% | |
| AGATCCCCACTTACCATTAG+AGG | - | 50590:8915-8934 | None:intergenic | 45.0% | |
| ATTATTGCCGATCTACCAGC+AGG | - | 50590:9271-9290 | None:intergenic | 45.0% | |
| CACCGATGTTAAGAAAGCTC+TGG | + | 50590:9081-9100 | MS.gene072592:CDS | 45.0% | |
| CCAATATCTGGCACAGTTCT+AGG | - | 50590:8668-8687 | None:intergenic | 45.0% | |
| CCGGTGTAGTTGCAAAAGTA+TGG | - | 50590:8604-8623 | None:intergenic | 45.0% | |
| CCTAGAACTGTGCCAGATAT+TGG | + | 50590:8665-8684 | MS.gene072592:CDS | 45.0% | |
| CGGGGGTTATGACCATTATT+GGG | - | 50590:8713-8732 | None:intergenic | 45.0% | |
| CGGTTATCTTGAAGTCCAAC+TGG | - | 50590:8323-8342 | None:intergenic | 45.0% | |
| CTTCCCTCTAATGGTAAGTG+GGG | + | 50590:8908-8927 | MS.gene072592:CDS | 45.0% | |
| CTTCCTTTCTTGAGCCTTTG+AGG | + | 50590:7550-7569 | MS.gene072592:intron | 45.0% | |
| CTTCTCAGTTGGCATCATCT+TGG | - | 50590:9017-9036 | None:intergenic | 45.0% | |
| CTTGTTTGCTTCCTTTCTCG+AGG | + | 50590:7439-7458 | MS.gene072592:intron | 45.0% | |
| CTTTGGACTACTCTCTTAGC+TGG | + | 50590:8047-8066 | MS.gene072592:CDS | 45.0% | |
| GAGTTGTTGTGTATCACCAC+TGG | - | 50590:8087-8106 | None:intergenic | 45.0% | |
| GATATCAGGGTAGACCAACT+TGG | + | 50590:8252-8271 | MS.gene072592:CDS | 45.0% | |
| GATCCCCACTTACCATTAGA+GGG | - | 50590:8914-8933 | None:intergenic | 45.0% | |
| GATGCTTGGGATCTCCATAA+CGG | - | 50590:9057-9076 | None:intergenic | 45.0% | |
| GCGCCAATTCTGATCCATTA+TGG | + | 50590:8420-8439 | MS.gene072592:CDS | 45.0% | |
| GGTCTTAATGGCTGGGAATA+TGG | - | 50590:8524-8543 | None:intergenic | 45.0% | |
| GGTGCTTTAACGCTGTATGT+TGG | + | 50590:9145-9164 | MS.gene072592:CDS | 45.0% | |
| GGTTGCAATGGAAAACCGTT+TGG | - | 50590:8545-8564 | None:intergenic | 45.0% | |
| GGTTTGACTCAGGAAGAGTA+AGG | - | 50590:9550-9569 | None:intergenic | 45.0% | |
| GTATACGACGGCGAAGATAT+CGG | + | 50590:6726-6745 | MS.gene072592:CDS | 45.0% | |
| TAAGAGTAGTGCTCCACTTC+CGG | + | 50590:8772-8791 | MS.gene072592:CDS | 45.0% | |
| TAATTCATCAGCAGTCTGGC+TGG | + | 50590:9513-9532 | MS.gene072592:CDS | 45.0% | |
| TCACTTAATCATGTTCCCGC+CGG | + | 50590:6928-6947 | MS.gene072592:CDS | 45.0% | |
| TCAGGAAGAGTAAGGATGAG+TGG | - | 50590:9542-9561 | None:intergenic | 45.0% | |
| TCCCAGCCATTAAGACCAAA+CGG | + | 50590:8527-8546 | MS.gene072592:CDS | 45.0% | |
| TGCTGGTAGATCGGCAATAA+TGG | + | 50590:9270-9289 | MS.gene072592:CDS | 45.0% | |
| TTATTGCCGATCTACCAGCA+GGG | - | 50590:9270-9289 | None:intergenic | 45.0% | |
| TTCAAATCTCCACTCCGTTG+CGG | - | 50590:8743-8762 | None:intergenic | 45.0% | |
| TTCATGGCTTTCGGTCCATT+TGG | - | 50590:8293-8312 | None:intergenic | 45.0% | |
| TTCGGTCCATTTGGTTGACT+CGG | - | 50590:8284-8303 | None:intergenic | 45.0% | |
| TTCGTTGATCTTACCGGAAG+TGG | - | 50590:8788-8807 | None:intergenic | 45.0% | |
| TTTGACGAGAATCAGCAACG+TGG | + | 50590:7130-7149 | MS.gene072592:intron | 45.0% | |
| ! | CAGCTAAGAGTGTATGGCTT+TGG | + | 50590:8030-8049 | MS.gene072592:CDS | 45.0% |
| ! | GGAGCACTACTCTTAGGATT+CGG | - | 50590:8767-8786 | None:intergenic | 45.0% |
| ! | GGTTGATATTCTGGACCATG+TGG | - | 50590:8857-8876 | None:intergenic | 45.0% |
| ! | TGTGTATCACCACTGGTTAG+TGG | - | 50590:8080-8099 | None:intergenic | 45.0% |
| ! | TTGCAGCAGCTAAGAGTGTA+TGG | + | 50590:8024-8043 | MS.gene072592:CDS | 45.0% |
| !! | AACCGTTTGGTCTTAATGGC+TGG | - | 50590:8532-8551 | None:intergenic | 45.0% |
| !! | ACCGTTTGGTCTTAATGGCT+GGG | - | 50590:8531-8550 | None:intergenic | 45.0% |
| !! | AGTGGTGCAGATGCTTTTTG+AGG | - | 50590:8002-8021 | None:intergenic | 45.0% |
| !! | GATTGCGGTAGAAGTTGATG+TGG | + | 50590:7239-7258 | MS.gene072592:intron | 45.0% |
| AACAACCCCTGCTGGTAGAT+CGG | + | 50590:9261-9280 | MS.gene072592:CDS | 50.0% | |
| ACACCTCAAAGCCTCGAGAA+AGG | - | 50590:7453-7472 | None:intergenic | 50.0% | |
| ACCACTCAAGGCTATCCACA+TGG | + | 50590:8839-8858 | MS.gene072592:CDS | 50.0% | |
| ACCTACACACTCGACAGCAA+TGG | + | 50590:8874-8893 | MS.gene072592:CDS | 50.0% | |
| ACCTCCTCATTCGCAGTTGA+TGG | - | 50590:7959-7978 | None:intergenic | 50.0% | |
| ATTGGCGCGCTCAAAGTTTG+TGG | - | 50590:8408-8427 | None:intergenic | 50.0% | |
| CCTACACACTCGACAGCAAT+GGG | + | 50590:8875-8894 | MS.gene072592:CDS | 50.0% | |
| CCTTGTCGACATGCTGTTCT+GGG | + | 50590:7866-7885 | MS.gene072592:CDS | 50.0% | |
| CGAAGTAAGTTCGTTACCGG+CGG | - | 50590:6947-6966 | None:intergenic | 50.0% | |
| CTCTTAGCTGCTGCAACTAG+TGG | - | 50590:8020-8039 | None:intergenic | 50.0% | |
| CTGAGTCAAACCCCGATTCA+GGG | + | 50590:9558-9577 | MS.gene072592:CDS | 50.0% | |
| CTGCGCAATTGCATGTGGAT+CGG | - | 50590:6791-6810 | None:intergenic | 50.0% | |
| CTTCCTTTCTCGAGGCTTTG+AGG | + | 50590:7447-7466 | MS.gene072592:intron | 50.0% | |
| GAAGTAAGTTCGTTACCGGC+GGG | - | 50590:6946-6965 | None:intergenic | 50.0% | |
| GCGGGGGTTATGACCATTAT+TGG | - | 50590:8714-8733 | None:intergenic | 50.0% | |
| GGCGAAGATATCGGTATGGT+GGG | + | 50590:6735-6754 | MS.gene072592:CDS | 50.0% | |
| GGTGCAAAAGGAGGTTGCAA+TGG | - | 50590:8557-8576 | None:intergenic | 50.0% | |
| GTCAGAAGTCACCCCTGAAT+CGG | - | 50590:9573-9592 | None:intergenic | 50.0% | |
| GTGCATAGCAGTACCACTCA+AGG | + | 50590:8827-8846 | MS.gene072592:CDS | 50.0% | |
| TACAGACGCAGGTATACGAG+TGG | - | 50590:6881-6900 | None:intergenic | 50.0% | |
| TATTGCCGATCTACCAGCAG+GGG | - | 50590:9269-9288 | None:intergenic | 50.0% | |
| TCAGAAGTCACCCCTGAATC+GGG | - | 50590:9572-9591 | None:intergenic | 50.0% | |
| TCCATCAACTGCGAATGAGG+AGG | + | 50590:7955-7974 | MS.gene072592:CDS | 50.0% | |
| TCCTTGTCGACATGCTGTTC+TGG | + | 50590:7865-7884 | MS.gene072592:CDS | 50.0% | |
| TGAGTCAAACCCCGATTCAG+GGG | + | 50590:9559-9578 | MS.gene072592:CDS | 50.0% | |
| TGGACTACTCTCTTAGCTGG+AGG | + | 50590:8050-8069 | MS.gene072592:CDS | 50.0% | |
| TTGTTGCCAACAGTCCTAGG+TGG | - | 50590:8629-8648 | None:intergenic | 50.0% | |
| ! | ACCATGTGGATAGCCTTGAG+TGG | - | 50590:8843-8862 | None:intergenic | 50.0% |
| ! | GGAAGTGGAGCACTACTCTT+AGG | - | 50590:8773-8792 | None:intergenic | 50.0% |
| ! | GTATCACCACTGGTTAGTGG+AGG | - | 50590:8077-8096 | None:intergenic | 50.0% |
| ! | GTCTGAGCAGCATTTGAGAC+AGG | - | 50590:8152-8171 | None:intergenic | 50.0% |
| ! | TCGGTCCATTTGGTTGACTC+GGG | - | 50590:8283-8302 | None:intergenic | 50.0% |
| ! | TGACTCGGGTTTCTCCAAGT+TGG | - | 50590:8269-8288 | None:intergenic | 50.0% |
| ! | TGTGTGTTGCTGTGATTGCG+CGG | + | 50590:7295-7314 | MS.gene072592:intron | 50.0% |
| !! | AACATCGGTGTTGCGATGCT+TGG | - | 50590:9071-9090 | None:intergenic | 50.0% |
| !! | ACATCGGTGTTGCGATGCTT+GGG | - | 50590:9070-9089 | None:intergenic | 50.0% |
| !! | CCTCATTCGCAGTTGATGGA+GGG | - | 50590:7955-7974 | None:intergenic | 50.0% |
| !! | GAAAGCTCTGGAGAGTGCTA+TGG | + | 50590:9093-9112 | MS.gene072592:CDS | 50.0% |
| !! | TATACGAGTGGTGTCACCGT+AGG | - | 50590:6869-6888 | None:intergenic | 50.0% |
| !! | TCCTCATTCGCAGTTGATGG+AGG | - | 50590:7956-7975 | None:intergenic | 50.0% |
| ACCGTAGGCGGAGATGGAAA+CGG | - | 50590:6854-6873 | None:intergenic | 55.0% | |
| AGGTGGAGCGACAACTAACG+CGG | + | 50590:6696-6715 | MS.gene072592:CDS | 55.0% | |
| CAGAAGTCACCCCTGAATCG+GGG | - | 50590:9571-9590 | None:intergenic | 55.0% | |
| CCCAGAACAGCATGTCGACA+AGG | - | 50590:7869-7888 | None:intergenic | 55.0% | |
| CCCATTGCTGTCGAGTGTGT+AGG | - | 50590:8878-8897 | None:intergenic | 55.0% | |
| CCCTCCATCAACTGCGAATG+AGG | + | 50590:7952-7971 | MS.gene072592:CDS | 55.0% | |
| CCTGAATCGGGGTTTGACTC+AGG | - | 50590:9560-9579 | None:intergenic | 55.0% | |
| CCTGAGTCAAACCCCGATTC+AGG | + | 50590:9557-9576 | MS.gene072592:CDS | 55.0% | |
| CGACGGCGAAGATATCGGTA+TGG | + | 50590:6731-6750 | MS.gene072592:CDS | 55.0% | |
| CGGCGAAGATATCGGTATGG+TGG | + | 50590:6734-6753 | MS.gene072592:CDS | 55.0% | |
| CTGCTCAGACACAGCAACAG+GGG | + | 50590:8162-8181 | MS.gene072592:CDS | 55.0% | |
| GAGTGCTATGGAGCAGCAGA+TGG | + | 50590:9105-9124 | MS.gene072592:CDS | 55.0% | |
| GCATGTGGATCGGAGCCTTT+AGG | - | 50590:6781-6800 | None:intergenic | 55.0% | |
| GCTGCTCAGACACAGCAACA+GGG | + | 50590:8161-8180 | MS.gene072592:CDS | 55.0% | |
| TCTTGAAGTCCAACTGGGGG+TGG | - | 50590:8317-8336 | None:intergenic | 55.0% | |
| TGCTATGGAGCAGCAGATGG+TGG | + | 50590:9108-9127 | MS.gene072592:CDS | 55.0% | |
| TGCTCAGACACAGCAACAGG+GGG | + | 50590:8163-8182 | MS.gene072592:CDS | 55.0% | |
| TGCTGCTCAGACACAGCAAC+AGG | + | 50590:8160-8179 | MS.gene072592:CDS | 55.0% | |
| ! | GGGGGTGGATTCATGGCTTT+CGG | - | 50590:8302-8321 | None:intergenic | 55.0% |
| ! | GTGTGTTGCTGTGATTGCGC+GGG | + | 50590:7296-7315 | MS.gene072592:intron | 55.0% |
| ! | TCCAACTGGGGGTGGATTCA+TGG | - | 50590:8309-8328 | None:intergenic | 55.0% |
| ACTCCGTTGCGGAACAGTGC+GGG | - | 50590:8732-8751 | None:intergenic | 60.0% | |
| CACTCCGTTGCGGAACAGTG+CGG | - | 50590:8733-8752 | None:intergenic | 60.0% | |
| CCAACAGTCCTAGGTGGCAC+CGG | - | 50590:8623-8642 | None:intergenic | 60.0% | |
| CCCGTTTCCATCTCCGCCTA+CGG | + | 50590:6850-6869 | MS.gene072592:CDS | 60.0% | |
| CCGTAGGCGGAGATGGAAAC+GGG | - | 50590:6853-6872 | None:intergenic | 60.0% | |
| GCCATGAATCCACCCCCAGT+TGG | + | 50590:8305-8324 | MS.gene072592:CDS | 60.0% | |
| GCTCAGACACAGCAACAGGG+GGG | + | 50590:8164-8183 | MS.gene072592:CDS | 60.0% | |
| GGAGGACCTCCACTAACCAG+TGG | + | 50590:8068-8087 | MS.gene072592:CDS | 60.0% | |
| TGGAGCGACAACTAACGCGG+AGG | + | 50590:6699-6718 | MS.gene072592:CDS | 60.0% | |
| ! | CAGCACGCGCTTTCTAGCAC+CGG | + | 50590:6901-6920 | MS.gene072592:CDS | 60.0% |
| ! | CGACATGCTGTTCTGGGCAG+TGG | + | 50590:7872-7891 | MS.gene072592:CDS | 60.0% |
| !! | ACGAGTGGTGTCACCGTAGG+CGG | - | 50590:6866-6885 | None:intergenic | 60.0% |
| !! | CAACTACACCGGTGCCACCT+AGG | + | 50590:8612-8631 | MS.gene072592:CDS | 60.0% |
| ACCCCCGCACTGTTCCGCAA+CGG | + | 50590:8726-8745 | MS.gene072592:CDS | 65.0% | |
| AGCGCGTGCTGTACAGACGC+AGG | - | 50590:6892-6911 | None:intergenic | 65.0% | |
| CGCACTGTTCCGCAACGGAG+TGG | + | 50590:8731-8750 | MS.gene072592:CDS | 65.0% | |
| CTCCGTTGCGGAACAGTGCG+GGG | - | 50590:8731-8750 | None:intergenic | 65.0% | |
| TCCGTTGCGGAACAGTGCGG+GGG | - | 50590:8730-8749 | None:intergenic | 65.0% | |
| ! | CGCGGAGGCGCAGTATACGA+CGG | + | 50590:6714-6733 | MS.gene072592:CDS | 65.0% |
| ! | GGTGTCACCGTAGGCGGAGA+TGG | - | 50590:6860-6879 | None:intergenic | 65.0% |
| !! | CCGGTGCCACCTAGGACTGT+TGG | + | 50590:8620-8639 | MS.gene072592:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50590 | gene | 6688 | 9598 | 6688 | ID=MS.gene072592 |
| 50590 | mRNA | 6688 | 9598 | 6688 | ID=MS.gene072592.t1;Parent=MS.gene072592 |
| 50590 | exon | 6688 | 6949 | 6688 | ID=MS.gene072592.t1.exon1;Parent=MS.gene072592.t1 |
| 50590 | CDS | 6688 | 6949 | 6688 | ID=cds.MS.gene072592.t1;Parent=MS.gene072592.t1 |
| 50590 | exon | 7838 | 9305 | 7838 | ID=MS.gene072592.t1.exon2;Parent=MS.gene072592.t1 |
| 50590 | CDS | 7838 | 9305 | 7838 | ID=cds.MS.gene072592.t1;Parent=MS.gene072592.t1 |
| 50590 | exon | 9412 | 9598 | 9412 | ID=MS.gene072592.t1.exon3;Parent=MS.gene072592.t1 |
| 50590 | CDS | 9412 | 9598 | 9412 | ID=cds.MS.gene072592.t1;Parent=MS.gene072592.t1 |
| Gene Sequence |
| Protein sequence |
