Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072754.t1 | XP_003611039.1 | 90.9 | 660 | 53 | 4 | 1 | 656 | 1 | 657 | 2.10E-305 | 1057.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072754.t1 | Q66GQ2 | 43.8 | 678 | 293 | 16 | 4 | 654 | 7 | 623 | 2.9e-109 | 397.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072754.t1 | G7KAQ1 | 90.9 | 660 | 53 | 4 | 1 | 656 | 1 | 657 | 1.5e-305 | 1057.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051719 | MS.gene072754 | 0.829207 | 5.86E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072754.t1 | MTR_5g009750 | 93.636 | 660 | 35 | 4 | 1 | 656 | 1 | 657 | 0.0 | 1171 |
| MS.gene072754.t1 | MTR_8g028230 | 43.860 | 456 | 204 | 8 | 14 | 461 | 15 | 426 | 3.18e-110 | 343 |
| MS.gene072754.t1 | MTR_8g028230 | 49.563 | 343 | 153 | 4 | 127 | 461 | 9 | 339 | 1.82e-101 | 318 |
| MS.gene072754.t1 | MTR_8g028230 | 49.351 | 308 | 137 | 3 | 162 | 461 | 16 | 312 | 6.65e-89 | 284 |
| MS.gene072754.t1 | MTR_8g028230 | 49.671 | 304 | 134 | 3 | 166 | 461 | 93 | 385 | 4.09e-87 | 282 |
| MS.gene072754.t1 | MTR_7g105430 | 34.307 | 411 | 254 | 7 | 17 | 413 | 30 | 438 | 4.32e-54 | 196 |
| MS.gene072754.t1 | MTR_4g052400 | 29.916 | 478 | 272 | 14 | 17 | 463 | 42 | 487 | 4.55e-39 | 153 |
| MS.gene072754.t1 | MTR_2g086890 | 28.041 | 485 | 290 | 17 | 17 | 463 | 35 | 498 | 7.35e-35 | 140 |
| MS.gene072754.t1 | MTR_4g052400 | 32.781 | 302 | 180 | 6 | 174 | 463 | 35 | 325 | 1.48e-33 | 134 |
| MS.gene072754.t1 | MTR_3g051430 | 27.394 | 376 | 236 | 8 | 64 | 438 | 99 | 438 | 2.56e-30 | 127 |
| MS.gene072754.t1 | MTR_5g092610 | 33.838 | 198 | 130 | 1 | 215 | 412 | 205 | 401 | 5.93e-26 | 113 |
| MS.gene072754.t1 | MTR_2g023020 | 25.108 | 231 | 171 | 2 | 221 | 450 | 174 | 403 | 8.27e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072754.t1 | AT5G41620 | 46.324 | 680 | 273 | 17 | 4 | 654 | 7 | 623 | 9.13e-164 | 484 |
| MS.gene072754.t1 | AT5G41620 | 49.814 | 538 | 223 | 11 | 127 | 654 | 6 | 506 | 1.66e-149 | 443 |
| MS.gene072754.t1 | AT5G41620 | 49.814 | 538 | 223 | 11 | 127 | 654 | 6 | 506 | 1.66e-149 | 443 |
| MS.gene072754.t1 | AT5G41620 | 48.491 | 497 | 209 | 11 | 168 | 654 | 5 | 464 | 2.49e-127 | 384 |
| MS.gene072754.t1 | AT1G64180 | 41.529 | 667 | 274 | 27 | 9 | 653 | 20 | 592 | 4.56e-121 | 373 |
| MS.gene072754.t1 | AT3G11590 | 34.772 | 417 | 244 | 9 | 17 | 413 | 38 | 446 | 9.23e-56 | 200 |
| MS.gene072754.t1 | AT3G11590 | 38.246 | 285 | 171 | 3 | 130 | 413 | 4 | 284 | 1.65e-49 | 179 |
| MS.gene072754.t1 | AT2G46250 | 34.635 | 384 | 182 | 12 | 17 | 392 | 13 | 335 | 2.29e-44 | 165 |
| MS.gene072754.t1 | AT2G46250 | 39.777 | 269 | 129 | 5 | 127 | 392 | 6 | 244 | 6.20e-43 | 159 |
| MS.gene072754.t1 | AT1G50660 | 26.728 | 217 | 157 | 2 | 196 | 412 | 213 | 427 | 1.06e-24 | 110 |
| MS.gene072754.t1 | AT3G20350 | 27.861 | 201 | 144 | 1 | 215 | 415 | 208 | 407 | 5.09e-23 | 104 |
| MS.gene072754.t1 | AT5G22310 | 27.273 | 462 | 238 | 16 | 17 | 466 | 28 | 403 | 5.95e-22 | 100 |
Find 169 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCTTCACCGTAATTATT+TGG | 0.155651 | 5.3:+3600017 | None:intergenic |
| GGAAGCTCGCGGCGGCTCTT+TGG | 0.226312 | 5.3:-3603416 | MS.gene072754:CDS |
| AAGGCTTAATTTATCGACTA+TGG | 0.232973 | 5.3:+3600595 | None:intergenic |
| GAAGCTCGCGGCGGCTCTTT+GGG | 0.247426 | 5.3:-3603415 | MS.gene072754:CDS |
| GACTTCTTATTTGAATTAGA+TGG | 0.247543 | 5.3:+3600266 | None:intergenic |
| ACAAATTGCAGAGGATAAAT+TGG | 0.286658 | 5.3:-3601014 | MS.gene072754:CDS |
| AGCTAGATCGTACACGTATC+AGG | 0.291718 | 5.3:-3601096 | MS.gene072754:CDS |
| TTGAAGAGAGAGGTATTGTT+AGG | 0.292708 | 5.3:-3603573 | MS.gene072754:CDS |
| TAAAAGTGTTAAACAGAATA+TGG | 0.293990 | 5.3:-3601174 | MS.gene072754:CDS |
| TCTCATAAGGGGTCAACTTT+TGG | 0.304212 | 5.3:-3600075 | MS.gene072754:CDS |
| TTTCCTTATGAAGTGTATAA+TGG | 0.309350 | 5.3:+3603322 | None:intergenic |
| GAAGAGAGTAATGGAGTAGA+AGG | 0.326378 | 5.3:+3603537 | None:intergenic |
| TTTCAAAGAGTGGGAAATAA+TGG | 0.326528 | 5.3:+3603385 | None:intergenic |
| TTCGACTAGCCTTATATTTG+TGG | 0.332907 | 5.3:+3600214 | None:intergenic |
| CCAGCCACGATTCAGATATA+TGG | 0.333398 | 5.3:+3600675 | None:intergenic |
| ATAGTAATAGTGCCGTTATT+CGG | 0.334430 | 5.3:-3603485 | MS.gene072754:CDS |
| AAGAGCCGCCGCGAGCTTCC+TGG | 0.339526 | 5.3:+3603419 | None:intergenic |
| ATAACGGCACTATTACTATT+AGG | 0.343415 | 5.3:+3603489 | None:intergenic |
| TCACTAATTTCAAAGTGTTC+AGG | 0.347518 | 5.3:+3600170 | None:intergenic |
| GGCAGAGACGGTGGTGGTGG+AGG | 0.347965 | 5.3:+3603440 | None:intergenic |
| TAGTAATAGTGCCGTTATTC+GGG | 0.353507 | 5.3:-3603484 | MS.gene072754:CDS |
| TTGAAGTCCAAGGAACTATT+AGG | 0.355096 | 5.3:+3601247 | None:intergenic |
| AAAAGAAGGTTTACCTGATC+AGG | 0.357090 | 5.3:+3603252 | None:intergenic |
| GCTAAGAAATTAGAAATATC+AGG | 0.367042 | 5.3:+3603294 | None:intergenic |
| TAATAAAAGTCTCTATTTCA+AGG | 0.367806 | 5.3:+3600576 | None:intergenic |
| GAGGCTTCCAAAGTTCATTC+AGG | 0.371254 | 5.3:-3599924 | MS.gene072754:CDS |
| CTCAAACTGCTTGCACTAGC+TGG | 0.381239 | 5.3:+3601849 | None:intergenic |
| CCTCTGCAATTTGTTTCATC+AGG | 0.385313 | 5.3:+3601023 | None:intergenic |
| AACCCCTCCTCGGCATCAAT+TGG | 0.387062 | 5.3:+3600239 | None:intergenic |
| TCTCTTCTTCTTCTAAACTT+TGG | 0.404422 | 5.3:-3603521 | MS.gene072754:CDS |
| TAATAGTTCCTTGGACTTCA+AGG | 0.405076 | 5.3:-3601245 | MS.gene072754:CDS |
| TTCTCCTAGTTCGCCTGATC+AGG | 0.407946 | 5.3:-3603265 | MS.gene072754:intron |
| TTAAAGCTAAACAAAATAGT+AGG | 0.413031 | 5.3:-3600556 | MS.gene072754:CDS |
| AGGGGTTGACCACAAATATA+AGG | 0.413736 | 5.3:-3600223 | MS.gene072754:CDS |
| GGAGTGGCGGCAGGATTATA+AGG | 0.419458 | 5.3:+3601268 | None:intergenic |
| AACAAAAGTCAGAGAAGGAT+TGG | 0.420892 | 5.3:-3600730 | MS.gene072754:CDS |
| CTTCTTGAAGCAAGATCAAA+AGG | 0.421456 | 5.3:-3599873 | MS.gene072754:CDS |
| CATTATTGATAATCTCATAA+GGG | 0.422085 | 5.3:-3600087 | MS.gene072754:CDS |
| GTACAGACTCTAACGAATTT+CGG | 0.423986 | 5.3:+3600504 | None:intergenic |
| CAATGCTGGATGGAGGAATC+AGG | 0.425318 | 5.3:-3599988 | MS.gene072754:CDS |
| TTGGACTTCAAGGGAAGGAT+TGG | 0.429307 | 5.3:-3601235 | MS.gene072754:CDS |
| ACATTATTGATAATCTCATA+AGG | 0.434821 | 5.3:-3600088 | MS.gene072754:CDS |
| ACTTTAGTTCCCATGTGGCT+TGG | 0.435876 | 5.3:+3600389 | None:intergenic |
| TTCACCGTAATTATTTGGTT+CGG | 0.445033 | 5.3:+3600022 | None:intergenic |
| CCCCTAAAAGGACCCTTTGA+GGG | 0.446415 | 5.3:+3599830 | None:intergenic |
| CCTCCTCGGCATCAATTGGC+TGG | 0.450968 | 5.3:+3600243 | None:intergenic |
| GAAAGGTGGGGAAGGGGAAG+CGG | 0.451666 | 5.3:-3603622 | MS.gene072754:CDS |
| TTATACACTTCATAAGGAAA+AGG | 0.453025 | 5.3:-3603319 | MS.gene072754:CDS |
| ATCACTGATGCAACATCATC+GGG | 0.454461 | 5.3:-3601811 | MS.gene072754:CDS |
| TGAACGAATGCAAATGCAAC+TGG | 0.455770 | 5.3:-3600651 | MS.gene072754:CDS |
| CAGCTAGTGCAAGCAGTTTG+AGG | 0.456989 | 5.3:-3601848 | MS.gene072754:CDS |
| TGAAGAGAGAGGTATTGTTA+GGG | 0.457618 | 5.3:-3603572 | MS.gene072754:CDS |
| AACAAGAAGGAAATTATTAG+AGG | 0.464193 | 5.3:-3600813 | MS.gene072754:CDS |
| GTTGCCATCCACTGCCTCAC+AGG | 0.464289 | 5.3:+3599960 | None:intergenic |
| ACTTCTTATTTGAATTAGAT+GGG | 0.464864 | 5.3:+3600267 | None:intergenic |
| TACCGTAACATGCAGGAGAC+AGG | 0.465914 | 5.3:+3601757 | None:intergenic |
| AAAGATGAAAGGTGGGGAAG+GGG | 0.466227 | 5.3:-3603628 | None:intergenic |
| CCATATATCTGAATCGTGGC+TGG | 0.469743 | 5.3:-3600675 | MS.gene072754:CDS |
| TTTACCTGATCAGGCGAACT+AGG | 0.470618 | 5.3:+3603261 | None:intergenic |
| AAAAGATGAAAGGTGGGGAA+GGG | 0.472639 | 5.3:-3603629 | None:intergenic |
| CGCCACTCCTAATAGTTCCT+TGG | 0.473332 | 5.3:-3601254 | MS.gene072754:CDS |
| CTCCTCGGCATCAATTGGCT+GGG | 0.473787 | 5.3:+3600244 | None:intergenic |
| TACGGAAAATCAAGCGATAA+GGG | 0.473992 | 5.3:-3600531 | MS.gene072754:CDS |
| GAAGCATCTTGCAGCAATGC+TGG | 0.474578 | 5.3:-3600002 | MS.gene072754:CDS |
| ACCCCTAAAAGGACCCTTTG+AGG | 0.475585 | 5.3:+3599829 | None:intergenic |
| GTACGGAAAATCAAGCGATA+AGG | 0.475715 | 5.3:-3600532 | MS.gene072754:CDS |
| CCTGGCAGAGACGGTGGTGG+TGG | 0.476105 | 5.3:+3603437 | None:intergenic |
| CCGCCATTATACACTTCATA+AGG | 0.477316 | 5.3:-3603325 | MS.gene072754:CDS |
| TACTATTGCTCTAAAAGACT+TGG | 0.478286 | 5.3:-3600846 | MS.gene072754:CDS |
| GCAGAGACGGTGGTGGTGGA+GGG | 0.481103 | 5.3:+3603441 | None:intergenic |
| CCACCACCACCGTCTCTGCC+AGG | 0.488293 | 5.3:-3603437 | MS.gene072754:CDS |
| AGGCTAGCCCTGTGAGGCAG+TGG | 0.491902 | 5.3:-3599968 | MS.gene072754:CDS |
| CCCCTGTCTCCTGCATGTTA+CGG | 0.491998 | 5.3:-3601759 | MS.gene072754:CDS |
| GTTAAACAGAATATGGAGCT+TGG | 0.494226 | 5.3:-3601167 | MS.gene072754:CDS |
| CATGCCGAACCAAATAATTA+CGG | 0.494909 | 5.3:-3600026 | MS.gene072754:CDS |
| TGCTGCTGTTCAATCTGTGC+GGG | 0.502625 | 5.3:-3600960 | MS.gene072754:CDS |
| TAAAAGATGAAAGGTGGGGA+AGG | 0.505651 | 5.3:-3603630 | None:intergenic |
| AGAGTTGCTTCGAGATCGAC+AGG | 0.509497 | 5.3:-3601068 | MS.gene072754:CDS |
| TATACACTTCATAAGGAAAA+GGG | 0.514646 | 5.3:-3603318 | MS.gene072754:CDS |
| TTAGAAGAAGAAGAGAGTAA+TGG | 0.514833 | 5.3:+3603528 | None:intergenic |
| ACGAGAGGAAATTAAGAAAA+CGG | 0.516279 | 5.3:-3600925 | MS.gene072754:CDS |
| TTGCAGAGGATAAATTGGTC+AGG | 0.516645 | 5.3:-3601009 | MS.gene072754:CDS |
| CCACTCTTTGAAATGCATAA+CGG | 0.516753 | 5.3:-3603375 | MS.gene072754:CDS |
| TGAATGAACTTTGGAAGCCT+CGG | 0.520229 | 5.3:+3599926 | None:intergenic |
| GCAACAGTGGTCCCGAATAA+CGG | 0.521549 | 5.3:+3603473 | None:intergenic |
| CGCGAGCTTCCTGGCAGAGA+CGG | 0.521778 | 5.3:+3603428 | None:intergenic |
| TAAATTGGTCAGGAAGAGTA+AGG | 0.523429 | 5.3:-3600999 | MS.gene072754:CDS |
| CATCACTGATGCAACATCAT+CGG | 0.523628 | 5.3:-3601812 | MS.gene072754:CDS |
| ACAAAAGTCAGAGAAGGATT+GGG | 0.524114 | 5.3:-3600729 | MS.gene072754:CDS |
| ATAAATAAAAGATGAAAGGT+GGG | 0.531786 | 5.3:-3603635 | None:intergenic |
| AATAGTTCCTTGGACTTCAA+GGG | 0.532254 | 5.3:-3601244 | MS.gene072754:CDS |
| CACTTTGAAATTAGTGAAAG+TGG | 0.540821 | 5.3:-3600164 | MS.gene072754:CDS |
| TAAACAAAATAGTAGGAGTA+CGG | 0.541220 | 5.3:-3600549 | MS.gene072754:CDS |
| CGTTATGCATTTCAAAGAGT+GGG | 0.542593 | 5.3:+3603376 | None:intergenic |
| GGTAGAAAAGTTGAAGAGAG+AGG | 0.544884 | 5.3:-3603583 | MS.gene072754:CDS |
| TGGTGGTGGAGGGTAGTGTT+TGG | 0.545651 | 5.3:+3603451 | None:intergenic |
| GAGACAGGGGTTGTTGTGCA+TGG | 0.545834 | 5.3:+3601772 | None:intergenic |
| CATAAATAAAAGATGAAAGG+TGG | 0.546973 | 5.3:-3603636 | None:intergenic |
| CCGTTATGCATTTCAAAGAG+TGG | 0.548140 | 5.3:+3603375 | None:intergenic |
| CGCGTTTGAGAACCCTCAAA+GGG | 0.548308 | 5.3:-3599842 | MS.gene072754:CDS |
| TGCATGTTACGGTAGTTCCA+TGG | 0.548563 | 5.3:-3601748 | MS.gene072754:CDS |
| AGGATTGATGCTTACCTCCA+TGG | 0.552394 | 5.3:+3601731 | None:intergenic |
| GTTGAACAAGCCAAGCCACA+TGG | 0.554770 | 5.3:-3600399 | MS.gene072754:CDS |
| ATTTGTGGTCAACCCCTCCT+CGG | 0.556802 | 5.3:+3600229 | None:intergenic |
| TAGCCCTGTGAGGCAGTGGA+TGG | 0.565008 | 5.3:-3599964 | MS.gene072754:CDS |
| CATCTTGCAGCAATGCTGGA+TGG | 0.566641 | 5.3:-3599998 | MS.gene072754:CDS |
| CTTCCTGGCAGAGACGGTGG+TGG | 0.566999 | 5.3:+3603434 | None:intergenic |
| CAGCCAATTGATGCCGAGGA+GGG | 0.568208 | 5.3:-3600242 | MS.gene072754:CDS |
| AGGGATAAATGAATACGAGC+AGG | 0.568593 | 5.3:-3600768 | MS.gene072754:CDS |
| AGCCAATTGATGCCGAGGAG+GGG | 0.570061 | 5.3:-3600241 | MS.gene072754:CDS |
| TCGCGTTTGAGAACCCTCAA+AGG | 0.570562 | 5.3:-3599843 | MS.gene072754:CDS |
| ACCGTAACATGCAGGAGACA+GGG | 0.576873 | 5.3:+3601758 | None:intergenic |
| AATCCTTCCCTTGAAGTCCA+AGG | 0.578220 | 5.3:+3601237 | None:intergenic |
| CATACATAGGAAACTTGCTC+GGG | 0.579188 | 5.3:-3600894 | MS.gene072754:CDS |
| GAACTATTAGGAGTGGCGGC+AGG | 0.579958 | 5.3:+3601259 | None:intergenic |
| CCAGCCAATTGATGCCGAGG+AGG | 0.580110 | 5.3:-3600243 | MS.gene072754:CDS |
| ATTGAACAGCAGCATGGAGT+CGG | 0.581942 | 5.3:+3600969 | None:intergenic |
| AGCCATAAATAAAAGATGAA+AGG | 0.582307 | 5.3:-3603639 | None:intergenic |
| TCATCATCACCCACAGCTTG+TGG | 0.586570 | 5.3:+3600458 | None:intergenic |
| GTCCCAGCCAATTGATGCCG+AGG | 0.591406 | 5.3:-3600246 | MS.gene072754:CDS |
| GCTAGATCGTACACGTATCA+GGG | 0.591665 | 5.3:-3601095 | MS.gene072754:CDS |
| GCATACATAGGAAACTTGCT+CGG | 0.593794 | 5.3:-3600895 | MS.gene072754:CDS |
| CTTTGTGATGAATTCGCTAG+AGG | 0.594728 | 5.3:-3600788 | MS.gene072754:CDS |
| CAACTGGAAGCAGCTCAGAA+TGG | 0.595433 | 5.3:-3600635 | MS.gene072754:CDS |
| AGGGTAGTGTTTGGCAACAG+TGG | 0.599701 | 5.3:+3603460 | None:intergenic |
| ATCTGTGCGGGATGAACTCG+AGG | 0.603038 | 5.3:-3600948 | MS.gene072754:CDS |
| ATGGAACTACCGTAACATGC+AGG | 0.603636 | 5.3:+3601750 | None:intergenic |
| GTTCCTTGGACTTCAAGGGA+AGG | 0.604397 | 5.3:-3601240 | MS.gene072754:CDS |
| TGTTAGTGCACCACAAGCTG+TGG | 0.604806 | 5.3:-3600468 | MS.gene072754:CDS |
| ATTATTGATAATCTCATAAG+GGG | 0.606042 | 5.3:-3600086 | MS.gene072754:CDS |
| TTTGTGATGAATTCGCTAGA+GGG | 0.607719 | 5.3:-3600787 | MS.gene072754:CDS |
| CCTTATGAAGTGTATAATGG+CGG | 0.607909 | 5.3:+3603325 | None:intergenic |
| TCTGTACTTTAGTTCCCATG+TGG | 0.609945 | 5.3:+3600384 | None:intergenic |
| TAAATAAAAGATGAAAGGTG+GGG | 0.610431 | 5.3:-3603634 | None:intergenic |
| AGTACAGAAAGAAGAGATTG+TGG | 0.616870 | 5.3:-3600369 | MS.gene072754:CDS |
| TCGACAGGCGGATCGACATG+AGG | 0.624664 | 5.3:-3601053 | MS.gene072754:CDS |
| TGGAGCAAGAGAGAACAAGA+AGG | 0.624940 | 5.3:-3600826 | MS.gene072754:CDS |
| AAGAGAGTAATGGAGTAGAA+GGG | 0.625314 | 5.3:+3603538 | None:intergenic |
| CAAGGAACTATTAGGAGTGG+CGG | 0.626079 | 5.3:+3601255 | None:intergenic |
| ACTGAAACAAAAGTCAGAGA+AGG | 0.626434 | 5.3:-3600735 | MS.gene072754:CDS |
| ATGCTGCTGTTCAATCTGTG+CGG | 0.627718 | 5.3:-3600961 | MS.gene072754:CDS |
| GTCCAAGGAACTATTAGGAG+TGG | 0.627829 | 5.3:+3601252 | None:intergenic |
| TTTGAAATTAGTGAAAGTGG+TGG | 0.630390 | 5.3:-3600161 | MS.gene072754:CDS |
| TTGCCATCCACTGCCTCACA+GGG | 0.631702 | 5.3:+3599961 | None:intergenic |
| GCACAGATTGAACAGCAGCA+TGG | 0.636544 | 5.3:+3600963 | None:intergenic |
| TACTCCATATATCTGAATCG+TGG | 0.637231 | 5.3:-3600679 | MS.gene072754:CDS |
| GTATTGTTAGGGAAAAGTAA+AGG | 0.640742 | 5.3:-3603561 | MS.gene072754:CDS |
| GGGATGAACTCGAGGACGAG+AGG | 0.641024 | 5.3:-3600940 | MS.gene072754:CDS |
| CTTGCAGCAATGCTGGATGG+AGG | 0.641250 | 5.3:-3599995 | MS.gene072754:CDS |
| GCACTAACAACGTCATTCAG+TGG | 0.643093 | 5.3:+3600482 | None:intergenic |
| TTCTTGAAGCAAGATCAAAA+GGG | 0.644494 | 5.3:-3599872 | MS.gene072754:CDS |
| GAGCTTCCTGGCAGAGACGG+TGG | 0.645682 | 5.3:+3603431 | None:intergenic |
| TTGAACAAGCCAAGCCACAT+GGG | 0.653573 | 5.3:-3600398 | MS.gene072754:CDS |
| GGCAACTCTTGATATATCCG+AGG | 0.655028 | 5.3:-3599943 | MS.gene072754:CDS |
| CGTCTCTGCCAGGAAGCTCG+CGG | 0.659499 | 5.3:-3603427 | MS.gene072754:CDS |
| AACGGTCAGAGAGCATACAT+AGG | 0.660688 | 5.3:-3600907 | MS.gene072754:CDS |
| CCTGATGAAACAAATTGCAG+AGG | 0.663440 | 5.3:-3601023 | MS.gene072754:CDS |
| CTAGTGCAAGCAGTTTGAGG+AGG | 0.667228 | 5.3:-3601845 | MS.gene072754:CDS |
| CCGTAACATGCAGGAGACAG+GGG | 0.667781 | 5.3:+3601759 | None:intergenic |
| CTCTAGCGAATTCATCACAA+AGG | 0.670486 | 5.3:+3600789 | None:intergenic |
| ACAAATATAAGGCTAGTCGA+AGG | 0.675314 | 5.3:-3600212 | MS.gene072754:CDS |
| CTCTTTGAAATGCATAACGG+TGG | 0.675757 | 5.3:-3603372 | MS.gene072754:CDS |
| GATAAATGAATACGAGCAGG+AGG | 0.678004 | 5.3:-3600765 | MS.gene072754:CDS |
| CTCTGCCAGGAAGCTCGCGG+CGG | 0.682029 | 5.3:-3603424 | MS.gene072754:CDS |
| GCGACGAAGTCTAGAATCAG+CGG | 0.685952 | 5.3:+3603347 | None:intergenic |
| GGAATCAGGCTAGCCCTGTG+AGG | 0.696632 | 5.3:-3599974 | MS.gene072754:CDS |
| GTTAGTGCACCACAAGCTGT+GGG | 0.705014 | 5.3:-3600467 | MS.gene072754:CDS |
| GTTGCTTCGAGATCGACAGG+CGG | 0.747261 | 5.3:-3601065 | MS.gene072754:CDS |
| ATGTTACGGTAGTTCCATGG+AGG | 0.757168 | 5.3:-3601745 | MS.gene072754:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCACGTAAAATAAAATAAAA+GGG | + | chr5.3:3601771-3601790 | None:intergenic | 15.0% |
| !! | TTAGAAAAAGTTAAAAAAGA+AGG | + | chr5.3:3600222-3600241 | None:intergenic | 15.0% |
| !! | AAAATATCTTATGCAAGTAA+TGG | - | chr5.3:3601135-3601154 | MS.gene072754:CDS | 20.0% |
| !! | AAGAGATAACTAATATCTAA+AGG | + | chr5.3:3601364-3601383 | None:intergenic | 20.0% |
| !! | ACGTAAAATAAAATAAAAGG+GGG | + | chr5.3:3601769-3601788 | None:intergenic | 20.0% |
| !! | ATTATTCTATGTTGAAACAT+TGG | - | chr5.3:3600428-3600447 | MS.gene072754:CDS | 20.0% |
| !! | CACGTAAAATAAAATAAAAG+GGG | + | chr5.3:3601770-3601789 | None:intergenic | 20.0% |
| !! | GTCACGTAAAATAAAATAAA+AGG | + | chr5.3:3601772-3601791 | None:intergenic | 20.0% |
| !! | TAATAAAAGTCTCTATTTCA+AGG | + | chr5.3:3602884-3602903 | None:intergenic | 20.0% |
| !! | TGATCAAATAATAATTACCT+TGG | - | chr5.3:3600997-3601016 | MS.gene072754:CDS | 20.0% |
| !! | TTAAAGCTAAACAAAATAGT+AGG | - | chr5.3:3602901-3602920 | MS.gene072754:intron | 20.0% |
| !! | TTATTCTATGTTGAAACATT+GGG | - | chr5.3:3600429-3600448 | MS.gene072754:CDS | 20.0% |
| !! | TTGTATCATACTATCATTTA+TGG | + | chr5.3:3600807-3600826 | None:intergenic | 20.0% |
| !!! | ACATTATTGATAATCTCATA+AGG | - | chr5.3:3603369-3603388 | MS.gene072754:CDS | 20.0% |
| !!! | ACTTCTTATTTGAATTAGAT+GGG | + | chr5.3:3603193-3603212 | None:intergenic | 20.0% |
| !!! | AGACAAAATGTTGTTTATTA+AGG | + | chr5.3:3601054-3601073 | None:intergenic | 20.0% |
| !!! | AGATTTATTGATGTTGTTTT+AGG | - | chr5.3:3600476-3600495 | MS.gene072754:CDS | 20.0% |
| !!! | AGTCTCTTTTGAAATTTATA+TGG | + | chr5.3:3600919-3600938 | None:intergenic | 20.0% |
| !!! | ATCAATAATGTGATTTTTAC+TGG | + | chr5.3:3603360-3603379 | None:intergenic | 20.0% |
| !!! | ATTATTGATAATCTCATAAG+GGG | - | chr5.3:3603371-3603390 | MS.gene072754:CDS | 20.0% |
| !!! | CATTATTGATAATCTCATAA+GGG | - | chr5.3:3603370-3603389 | MS.gene072754:CDS | 20.0% |
| !!! | TAAAAGTGTTAAACAGAATA+TGG | - | chr5.3:3602283-3602302 | MS.gene072754:intron | 20.0% |
| !!! | TGAAATTTTCAAAATAACCA+AGG | + | chr5.3:3601017-3601036 | None:intergenic | 20.0% |
| ! | AACAAGAAGGAAATTATTAG+AGG | - | chr5.3:3602644-3602663 | MS.gene072754:intron | 25.0% |
| ! | AGGAAAAATGAAATTCTTAG+CGG | + | chr5.3:3600759-3600778 | None:intergenic | 25.0% |
| ! | AGGAATTATAAAGTAGTAGT+AGG | + | chr5.3:3600559-3600578 | None:intergenic | 25.0% |
| ! | GCTAAGAAATTAGAAATATC+AGG | + | chr5.3:3600166-3600185 | None:intergenic | 25.0% |
| ! | GTTAAATTACTTAGCTGATT+TGG | - | chr5.3:3600243-3600262 | MS.gene072754:CDS | 25.0% |
| ! | TAAACAAAATAGTAGGAGTA+CGG | - | chr5.3:3602908-3602927 | MS.gene072754:intron | 25.0% |
| ! | TATACACTTCATAAGGAAAA+GGG | - | chr5.3:3600139-3600158 | MS.gene072754:CDS | 25.0% |
| ! | TTATACACTTCATAAGGAAA+AGG | - | chr5.3:3600138-3600157 | MS.gene072754:CDS | 25.0% |
| ! | TTTCCTTATGAAGTGTATAA+TGG | + | chr5.3:3600138-3600157 | None:intergenic | 25.0% |
| !! | GACTTCTTATTTGAATTAGA+TGG | + | chr5.3:3603194-3603213 | None:intergenic | 25.0% |
| !! | TGATATTTTCATCTATACAC+TGG | + | chr5.3:3601268-3601287 | None:intergenic | 25.0% |
| !!! | ATTGATGTTGTTTTAGGTTA+TGG | - | chr5.3:3600482-3600501 | MS.gene072754:CDS | 25.0% |
| !!! | TGATTTTTTCTTCTTGACAT+TGG | + | chr5.3:3603141-3603160 | None:intergenic | 25.0% |
| !!! | TGTATCATTTTGACATCATA+TGG | - | chr5.3:3601817-3601836 | MS.gene072754:CDS | 25.0% |
| AAATACCAAATGAAATGCAC+GGG | + | chr5.3:3600355-3600374 | None:intergenic | 30.0% | |
| AAGAAGAAAAAATCAGTTCC+AGG | - | chr5.3:3603146-3603165 | MS.gene072754:intron | 30.0% | |
| ACAAATTGCAGAGGATAAAT+TGG | - | chr5.3:3602443-3602462 | MS.gene072754:intron | 30.0% | |
| ACAGAATATATCTCTACACA+AGG | + | chr5.3:3600782-3600801 | None:intergenic | 30.0% | |
| ACGAGAGGAAATTAAGAAAA+CGG | - | chr5.3:3602532-3602551 | MS.gene072754:intron | 30.0% | |
| AGCGGAAAAAAAGGAAAAAT+TGG | - | chr5.3:3599853-3599872 | MS.gene072754:CDS | 30.0% | |
| ATAACGGCACTATTACTATT+AGG | + | chr5.3:3599971-3599990 | None:intergenic | 30.0% | |
| ATTTGATCAACAAGAAATCC+AGG | + | chr5.3:3600986-3601005 | None:intergenic | 30.0% | |
| CAAATACCAAATGAAATGCA+CGG | + | chr5.3:3600356-3600375 | None:intergenic | 30.0% | |
| GATTCGCATCTTCATAAAAT+GGG | + | chr5.3:3600724-3600743 | None:intergenic | 30.0% | |
| GTATTGTTAGGGAAAAGTAA+AGG | - | chr5.3:3599896-3599915 | MS.gene072754:CDS | 30.0% | |
| GTGTTGCATTATAATTGTGT+TGG | - | chr5.3:3601426-3601445 | MS.gene072754:intron | 30.0% | |
| TAATGACAAAGTGAGAATGA+AGG | + | chr5.3:3601113-3601132 | None:intergenic | 30.0% | |
| TCATCATTCAATTGGAATCA+GGG | - | chr5.3:3600850-3600869 | MS.gene072754:CDS | 30.0% | |
| TCCAAAGCAAAGATTGATTA+CGG | - | chr5.3:3601866-3601885 | MS.gene072754:intron | 30.0% | |
| TCTCTTCTTCTTCTAAACTT+TGG | - | chr5.3:3599936-3599955 | MS.gene072754:CDS | 30.0% | |
| TGATTCCAATTGAATGATGA+CGG | + | chr5.3:3600850-3600869 | None:intergenic | 30.0% | |
| TGATTCGCATCTTCATAAAA+TGG | + | chr5.3:3600725-3600744 | None:intergenic | 30.0% | |
| TTAGAAGAAGAAGAGAGTAA+TGG | + | chr5.3:3599932-3599951 | None:intergenic | 30.0% | |
| TTCACCGTAATTATTTGGTT+CGG | + | chr5.3:3603438-3603457 | None:intergenic | 30.0% | |
| TTCTTGAAGCAAGATCAAAA+GGG | - | chr5.3:3603585-3603604 | MS.gene072754:CDS | 30.0% | |
| TTGGGTTAATGATTCTTGAT+AGG | - | chr5.3:3600447-3600466 | MS.gene072754:CDS | 30.0% | |
| TTTATGAAGATGCGAATCAA+CGG | - | chr5.3:3600726-3600745 | MS.gene072754:CDS | 30.0% | |
| TTTCAAAGAGTGGGAAATAA+TGG | + | chr5.3:3600075-3600094 | None:intergenic | 30.0% | |
| TTTCTCAATCTGAAGGTAAT+TGG | + | chr5.3:3601964-3601983 | None:intergenic | 30.0% | |
| ! | AAGGCTTAATTTATCGACTA+TGG | + | chr5.3:3602865-3602884 | None:intergenic | 30.0% |
| ! | AGTTGTGTTACTGTTAAGTT+TGG | - | chr5.3:3602027-3602046 | MS.gene072754:intron | 30.0% |
| ! | ATAGTAATAGTGCCGTTATT+CGG | - | chr5.3:3599972-3599991 | MS.gene072754:CDS | 30.0% |
| ! | CATTGACATTCTAAAAAGCA+TGG | - | chr5.3:3601171-3601190 | MS.gene072754:CDS | 30.0% |
| ! | GATTTATCATTGACTGACAA+AGG | - | chr5.3:3600621-3600640 | MS.gene072754:CDS | 30.0% |
| ! | GGCAATTCATTCTTTATTTG+AGG | - | chr5.3:3600599-3600618 | MS.gene072754:CDS | 30.0% |
| ! | TCACTAATTTCAAAGTGTTC+AGG | + | chr5.3:3603290-3603309 | None:intergenic | 30.0% |
| ! | TTTGAAATTAGTGAAAGTGG+TGG | - | chr5.3:3603296-3603315 | MS.gene072754:CDS | 30.0% |
| ! | TTTTGATCCTGAATGAACTT+TGG | + | chr5.3:3603543-3603562 | None:intergenic | 30.0% |
| !! | CACTTTGAAATTAGTGAAAG+TGG | - | chr5.3:3603293-3603312 | MS.gene072754:CDS | 30.0% |
| !! | TACTATTGCTCTAAAAGACT+TGG | - | chr5.3:3602611-3602630 | MS.gene072754:intron | 30.0% |
| !!! | GATGTTTTGAGACTATAATG+TGG | + | chr5.3:3602252-3602271 | None:intergenic | 30.0% |
| !!! | TCTTCTAAACTTTGGCTTTT+CGG | - | chr5.3:3599944-3599963 | MS.gene072754:CDS | 30.0% |
| AAAAAATCAGTTCCAGGAGA+AGG | - | chr5.3:3603152-3603171 | MS.gene072754:intron | 35.0% | |
| AAAAATCAGTTCCAGGAGAA+GGG | - | chr5.3:3603153-3603172 | MS.gene072754:intron | 35.0% | |
| AAAAGAAGGTTTACCTGATC+AGG | + | chr5.3:3600208-3600227 | None:intergenic | 35.0% | |
| AACAAAAGTCAGAGAAGGAT+TGG | - | chr5.3:3602727-3602746 | MS.gene072754:intron | 35.0% | |
| AAGAGACTTTGTTGAATGCT+AGG | - | chr5.3:3600931-3600950 | MS.gene072754:CDS | 35.0% | |
| AATAGTTCCTTGGACTTCAA+GGG | - | chr5.3:3602213-3602232 | MS.gene072754:intron | 35.0% | |
| ACAAAAGTCAGAGAAGGATT+GGG | - | chr5.3:3602728-3602747 | MS.gene072754:intron | 35.0% | |
| ACTGAAACAAAAGTCAGAGA+AGG | - | chr5.3:3602722-3602741 | MS.gene072754:intron | 35.0% | |
| AGTACAGAAAGAAGAGATTG+TGG | - | chr5.3:3603088-3603107 | MS.gene072754:intron | 35.0% | |
| ATAAAATAAAAGGGGGAAGC+AGG | + | chr5.3:3601762-3601781 | None:intergenic | 35.0% | |
| ATCAGAATGGTTGTAATGTC+AGG | + | chr5.3:3601534-3601553 | None:intergenic | 35.0% | |
| CATGCCGAACCAAATAATTA+CGG | - | chr5.3:3603431-3603450 | MS.gene072754:CDS | 35.0% | |
| CCAAAGCAAAGATTGATTAC+GGG | - | chr5.3:3601867-3601886 | MS.gene072754:intron | 35.0% | |
| CCTTATGAAGTGTATAATGG+CGG | + | chr5.3:3600135-3600154 | None:intergenic | 35.0% | |
| CGTTATGCATTTCAAAGAGT+GGG | + | chr5.3:3600084-3600103 | None:intergenic | 35.0% | |
| CTACAATATATGCAGACATG+AGG | + | chr5.3:3601481-3601500 | None:intergenic | 35.0% | |
| CTTCTTGAAGCAAGATCAAA+AGG | - | chr5.3:3603584-3603603 | MS.gene072754:CDS | 35.0% | |
| GAATATATCTCTACACAAGG+AGG | + | chr5.3:3600779-3600798 | None:intergenic | 35.0% | |
| GACTGAATTTCTCAATCTGA+AGG | + | chr5.3:3601971-3601990 | None:intergenic | 35.0% | |
| GATGCTTCACCGTAATTATT+TGG | + | chr5.3:3603443-3603462 | None:intergenic | 35.0% | |
| GTACAGACTCTAACGAATTT+CGG | + | chr5.3:3602956-3602975 | None:intergenic | 35.0% | |
| GTCATCATTCAATTGGAATC+AGG | - | chr5.3:3600849-3600868 | MS.gene072754:CDS | 35.0% | |
| GTTAAACAGAATATGGAGCT+TGG | - | chr5.3:3602290-3602309 | MS.gene072754:intron | 35.0% | |
| GTTGAAGTCACTGTGTTTAT+AGG | - | chr5.3:3602083-3602102 | MS.gene072754:intron | 35.0% | |
| TAAAATAAAAGGGGGAAGCA+GGG | + | chr5.3:3601761-3601780 | None:intergenic | 35.0% | |
| TAAATTGGTCAGGAAGAGTA+AGG | - | chr5.3:3602458-3602477 | MS.gene072754:intron | 35.0% | |
| TAATAGTTCCTTGGACTTCA+AGG | - | chr5.3:3602212-3602231 | MS.gene072754:intron | 35.0% | |
| TACGGAAAATCAAGCGATAA+GGG | - | chr5.3:3602926-3602945 | MS.gene072754:intron | 35.0% | |
| TACTCCATATATCTGAATCG+TGG | - | chr5.3:3602778-3602797 | MS.gene072754:intron | 35.0% | |
| TCTATACACTGGTAAGAGTT+TGG | + | chr5.3:3601257-3601276 | None:intergenic | 35.0% | |
| TTGAAGTCCAAGGAACTATT+AGG | + | chr5.3:3602213-3602232 | None:intergenic | 35.0% | |
| TTTGTGATGAATTCGCTAGA+GGG | - | chr5.3:3602670-3602689 | MS.gene072754:intron | 35.0% | |
| ! | AACACGATTTTTCTCTTGGA+GGG | - | chr5.3:3601793-3601812 | MS.gene072754:CDS | 35.0% |
| ! | AAGAGAGTAATGGAGTAGAA+GGG | + | chr5.3:3599922-3599941 | None:intergenic | 35.0% |
| ! | ACAAATATAAGGCTAGTCGA+AGG | - | chr5.3:3603245-3603264 | MS.gene072754:intron | 35.0% |
| ! | ATTAGCACTGAGACATGTTT+AGG | - | chr5.3:3601074-3601093 | MS.gene072754:CDS | 35.0% |
| ! | GATGATGATGATGATTCTGT+AGG | - | chr5.3:3603014-3603033 | MS.gene072754:intron | 35.0% |
| ! | TAGTAATAGTGCCGTTATTC+GGG | - | chr5.3:3599973-3599992 | MS.gene072754:CDS | 35.0% |
| ! | TGATTTTTAAACCCTTCTCC+TGG | + | chr5.3:3603167-3603186 | None:intergenic | 35.0% |
| ! | TTGGTATTTGCTACGTACTT+GGG | - | chr5.3:3600366-3600385 | MS.gene072754:CDS | 35.0% |
| ! | TTTGACATCATATGGTGTCA+TGG | - | chr5.3:3601825-3601844 | MS.gene072754:CDS | 35.0% |
| ! | TTTGGTATTTGCTACGTACT+TGG | - | chr5.3:3600365-3600384 | MS.gene072754:CDS | 35.0% |
| !! | ACTTAGCTGATTTGGTGTAT+TGG | - | chr5.3:3600251-3600270 | MS.gene072754:CDS | 35.0% |
| !! | CCACTCTTTGAAATGCATAA+CGG | - | chr5.3:3600082-3600101 | MS.gene072754:CDS | 35.0% |
| !! | TGAAGAGAGAGGTATTGTTA+GGG | - | chr5.3:3599885-3599904 | MS.gene072754:CDS | 35.0% |
| !! | TTCGACTAGCCTTATATTTG+TGG | + | chr5.3:3603246-3603265 | None:intergenic | 35.0% |
| !! | TTGAAGAGAGAGGTATTGTT+AGG | - | chr5.3:3599884-3599903 | MS.gene072754:CDS | 35.0% |
| AAAATAAAAGGGGGAAGCAG+GGG | + | chr5.3:3601760-3601779 | None:intergenic | 40.0% | |
| AGATGCTGATGCAACATTTC+AGG | + | chr5.3:3600579-3600598 | None:intergenic | 40.0% | |
| AGGGATAAATGAATACGAGC+AGG | - | chr5.3:3602689-3602708 | MS.gene072754:intron | 40.0% | |
| AGGGGTTGACCACAAATATA+AGG | - | chr5.3:3603234-3603253 | MS.gene072754:intron | 40.0% | |
| ATCACTGATGCAACATCATC+GGG | - | chr5.3:3601646-3601665 | MS.gene072754:intron | 40.0% | |
| ATCTTGTGTTTGCCCTTTCT+TGG | - | chr5.3:3602153-3602172 | MS.gene072754:intron | 40.0% | |
| CATCACTGATGCAACATCAT+CGG | - | chr5.3:3601645-3601664 | MS.gene072754:intron | 40.0% | |
| CATTGCCGTCATCATTCAAT+TGG | - | chr5.3:3600842-3600861 | MS.gene072754:CDS | 40.0% | |
| CCCGTAATCAATCTTTGCTT+TGG | + | chr5.3:3601870-3601889 | None:intergenic | 40.0% | |
| CCGCCATTATACACTTCATA+AGG | - | chr5.3:3600132-3600151 | MS.gene072754:CDS | 40.0% | |
| CCGTTATGCATTTCAAAGAG+TGG | + | chr5.3:3600085-3600104 | None:intergenic | 40.0% | |
| CCTGATGAAACAAATTGCAG+AGG | - | chr5.3:3602434-3602453 | MS.gene072754:intron | 40.0% | |
| CTCCAAGAGAAAAATCGTGT+TGG | + | chr5.3:3601794-3601813 | None:intergenic | 40.0% | |
| CTCTAGCGAATTCATCACAA+AGG | + | chr5.3:3602671-3602690 | None:intergenic | 40.0% | |
| CTTTGTGATGAATTCGCTAG+AGG | - | chr5.3:3602669-3602688 | MS.gene072754:intron | 40.0% | |
| GAACTCTGTGTCTATCAGAA+TGG | + | chr5.3:3601547-3601566 | None:intergenic | 40.0% | |
| GATAAATGAATACGAGCAGG+AGG | - | chr5.3:3602692-3602711 | MS.gene072754:intron | 40.0% | |
| GGTAGAAAAGTTGAAGAGAG+AGG | - | chr5.3:3599874-3599893 | MS.gene072754:CDS | 40.0% | |
| GTACGGAAAATCAAGCGATA+AGG | - | chr5.3:3602925-3602944 | MS.gene072754:intron | 40.0% | |
| TCTTGTGTTTGCCCTTTCTT+GGG | - | chr5.3:3602154-3602173 | MS.gene072754:intron | 40.0% | |
| TGAAATGTTGCATCAGCATC+TGG | - | chr5.3:3600578-3600597 | MS.gene072754:CDS | 40.0% | |
| TGAACGAATGCAAATGCAAC+TGG | - | chr5.3:3602806-3602825 | MS.gene072754:intron | 40.0% | |
| TTGCAGAGGATAAATTGGTC+AGG | - | chr5.3:3602448-3602467 | MS.gene072754:intron | 40.0% | |
| ! | CAACACGATTTTTCTCTTGG+AGG | - | chr5.3:3601792-3601811 | MS.gene072754:CDS | 40.0% |
| ! | CATACATAGGAAACTTGCTC+GGG | - | chr5.3:3602563-3602582 | MS.gene072754:intron | 40.0% |
| ! | CCTCTGCAATTTGTTTCATC+AGG | + | chr5.3:3602437-3602456 | None:intergenic | 40.0% |
| ! | GAAGAGAGTAATGGAGTAGA+AGG | + | chr5.3:3599923-3599942 | None:intergenic | 40.0% |
| ! | GACCAACACGATTTTTCTCT+TGG | - | chr5.3:3601789-3601808 | MS.gene072754:CDS | 40.0% |
| ! | GCATACATAGGAAACTTGCT+CGG | - | chr5.3:3602562-3602581 | MS.gene072754:intron | 40.0% |
| ! | TCTCATAAGGGGTCAACTTT+TGG | - | chr5.3:3603382-3603401 | MS.gene072754:CDS | 40.0% |
| ! | TCTGTACTTTAGTTCCCATG+TGG | + | chr5.3:3603076-3603095 | None:intergenic | 40.0% |
| ! | TGAATGAACTTTGGAAGCCT+CGG | + | chr5.3:3603534-3603553 | None:intergenic | 40.0% |
| ! | TGGTATTTGCTACGTACTTG+GGG | - | chr5.3:3600367-3600386 | MS.gene072754:CDS | 40.0% |
| !! | AGCAGCTCAGAATGGTTTTA+TGG | - | chr5.3:3602830-3602849 | MS.gene072754:intron | 40.0% |
| !! | ATTTGGTGTATTGGCTTGTG+AGG | - | chr5.3:3600260-3600279 | MS.gene072754:CDS | 40.0% |
| !! | CTCTTTGAAATGCATAACGG+TGG | - | chr5.3:3600085-3600104 | MS.gene072754:CDS | 40.0% |
| !! | CTTATGCAAGTAATGGACCT+GGG | - | chr5.3:3601142-3601161 | MS.gene072754:CDS | 40.0% |
| !! | CTTTGGAATTGTGACTGTCT+GGG | + | chr5.3:3601853-3601872 | None:intergenic | 40.0% |
| !! | TCTTATGCAAGTAATGGACC+TGG | - | chr5.3:3601141-3601160 | MS.gene072754:CDS | 40.0% |
| !! | TTTGGTGTATTGGCTTGTGA+GGG | - | chr5.3:3600261-3600280 | MS.gene072754:CDS | 40.0% |
| AATCCTTCCCTTGAAGTCCA+AGG | + | chr5.3:3602223-3602242 | None:intergenic | 45.0% | |
| AGCTAGATCGTACACGTATC+AGG | - | chr5.3:3602361-3602380 | MS.gene072754:intron | 45.0% | |
| AGGATTGATGCTTACCTCCA+TGG | + | chr5.3:3601729-3601748 | None:intergenic | 45.0% | |
| ATGCTGCTGTTCAATCTGTG+CGG | - | chr5.3:3602496-3602515 | MS.gene072754:intron | 45.0% | |
| ATGGAACTACCGTAACATGC+AGG | + | chr5.3:3601710-3601729 | None:intergenic | 45.0% | |
| ATGTTACGGTAGTTCCATGG+AGG | - | chr5.3:3601712-3601731 | MS.gene072754:intron | 45.0% | |
| ATTGAACAGCAGCATGGAGT+CGG | + | chr5.3:3602491-3602510 | None:intergenic | 45.0% | |
| CAAGGAACTATTAGGAGTGG+CGG | + | chr5.3:3602205-3602224 | None:intergenic | 45.0% | |
| CCAGCCACGATTCAGATATA+TGG | + | chr5.3:3602785-3602804 | None:intergenic | 45.0% | |
| CCATATATCTGAATCGTGGC+TGG | - | chr5.3:3602782-3602801 | MS.gene072754:intron | 45.0% | |
| CTGATCCCGTGCATTTCATT+TGG | - | chr5.3:3600347-3600366 | MS.gene072754:CDS | 45.0% | |
| GAGGCTTCCAAAGTTCATTC+AGG | - | chr5.3:3603533-3603552 | MS.gene072754:CDS | 45.0% | |
| GCACTAACAACGTCATTCAG+TGG | + | chr5.3:3602978-3602997 | None:intergenic | 45.0% | |
| GCTAGATCGTACACGTATCA+GGG | - | chr5.3:3602362-3602381 | MS.gene072754:intron | 45.0% | |
| GGCAACTCTTGATATATCCG+AGG | - | chr5.3:3603514-3603533 | MS.gene072754:CDS | 45.0% | |
| GTCATCTGCAACCCAAGAAA+GGG | + | chr5.3:3602168-3602187 | None:intergenic | 45.0% | |
| GTCCAAGGAACTATTAGGAG+TGG | + | chr5.3:3602208-3602227 | None:intergenic | 45.0% | |
| TCAACAAGAAATCCAGGCAG+AGG | + | chr5.3:3600980-3600999 | None:intergenic | 45.0% | |
| TGCATGTTACGGTAGTTCCA+TGG | - | chr5.3:3601709-3601728 | MS.gene072754:intron | 45.0% | |
| TGGAGCAAGAGAGAACAAGA+AGG | - | chr5.3:3602631-3602650 | MS.gene072754:intron | 45.0% | |
| TGTCATCTGCAACCCAAGAA+AGG | + | chr5.3:3602169-3602188 | None:intergenic | 45.0% | |
| TTGAACAAGCCAAGCCACAT+GGG | - | chr5.3:3603059-3603078 | MS.gene072754:intron | 45.0% | |
| TTGGACTTCAAGGGAAGGAT+TGG | - | chr5.3:3602222-3602241 | MS.gene072754:intron | 45.0% | |
| TTTACCTGATCAGGCGAACT+AGG | + | chr5.3:3600199-3600218 | None:intergenic | 45.0% | |
| ! | AACGGTCAGAGAGCATACAT+AGG | - | chr5.3:3602550-3602569 | MS.gene072754:intron | 45.0% |
| ! | ACTTTAGTTCCCATGTGGCT+TGG | + | chr5.3:3603071-3603090 | None:intergenic | 45.0% |
| ! | AGCACTGAGACATGTTTAGG+TGG | - | chr5.3:3601077-3601096 | MS.gene072754:CDS | 45.0% |
| ! | GGTCAACTTTTGGCATCAGA+GGG | - | chr5.3:3603392-3603411 | MS.gene072754:CDS | 45.0% |
| !! | GCTTTGGAATTGTGACTGTC+TGG | + | chr5.3:3601854-3601873 | None:intergenic | 45.0% |
| !! | TAAAAATAAAAATTCTTTAA+AGG | + | chr5.3:3601330-3601349 | None:intergenic | 5.0% |
| !!! | TTAAAGAATTTTTATTTTTA+CGG | - | chr5.3:3601330-3601349 | MS.gene072754:intron | 5.0% |
| ACCGTAACATGCAGGAGACA+GGG | + | chr5.3:3601702-3601721 | None:intergenic | 50.0% | |
| AGAGTTGCTTCGAGATCGAC+AGG | - | chr5.3:3602389-3602408 | MS.gene072754:intron | 50.0% | |
| AGGGTAGTGTTTGGCAACAG+TGG | + | chr5.3:3600000-3600019 | None:intergenic | 50.0% | |
| ATTTGTGGTCAACCCCTCCT+CGG | + | chr5.3:3603231-3603250 | None:intergenic | 50.0% | |
| CAACTGGAAGCAGCTCAGAA+TGG | - | chr5.3:3602822-3602841 | MS.gene072754:intron | 50.0% | |
| CAATGCTGGATGGAGGAATC+AGG | - | chr5.3:3603469-3603488 | MS.gene072754:CDS | 50.0% | |
| CAGCTAGTGCAAGCAGTTTG+AGG | - | chr5.3:3601609-3601628 | MS.gene072754:intron | 50.0% | |
| CATCTTGCAGCAATGCTGGA+TGG | - | chr5.3:3603459-3603478 | MS.gene072754:CDS | 50.0% | |
| CGCCACTCCTAATAGTTCCT+TGG | - | chr5.3:3602203-3602222 | MS.gene072754:intron | 50.0% | |
| CGCGTTTGAGAACCCTCAAA+GGG | - | chr5.3:3603615-3603634 | MS.gene072754:CDS | 50.0% | |
| CTAGCTGGCTGATGAAAGAG+TGG | + | chr5.3:3601596-3601615 | None:intergenic | 50.0% | |
| CTAGTGCAAGCAGTTTGAGG+AGG | - | chr5.3:3601612-3601631 | MS.gene072754:intron | 50.0% | |
| CTCAAACTGCTTGCACTAGC+TGG | + | chr5.3:3601611-3601630 | None:intergenic | 50.0% | |
| GAATGTCAATGAGACCTCCC+AGG | + | chr5.3:3601162-3601181 | None:intergenic | 50.0% | |
| GACTGACAAAGGACAGAGTC+AGG | - | chr5.3:3600632-3600651 | MS.gene072754:CDS | 50.0% | |
| GCAACAGTGGTCCCGAATAA+CGG | + | chr5.3:3599987-3600006 | None:intergenic | 50.0% | |
| GCACAGATTGAACAGCAGCA+TGG | + | chr5.3:3602497-3602516 | None:intergenic | 50.0% | |
| GGAAGGGGAAGCGGAAAAAA+AGG | - | chr5.3:3599844-3599863 | MS.gene072754:CDS | 50.0% | |
| GTTAGTGCACCACAAGCTGT+GGG | - | chr5.3:3602990-3603009 | MS.gene072754:intron | 50.0% | |
| GTTCCTTGGACTTCAAGGGA+AGG | - | chr5.3:3602217-3602236 | MS.gene072754:intron | 50.0% | |
| GTTGAACAAGCCAAGCCACA+TGG | - | chr5.3:3603058-3603077 | MS.gene072754:intron | 50.0% | |
| TACCGTAACATGCAGGAGAC+AGG | + | chr5.3:3601703-3601722 | None:intergenic | 50.0% | |
| TCATCATCACCCACAGCTTG+TGG | + | chr5.3:3603002-3603021 | None:intergenic | 50.0% | |
| TCGCGTTTGAGAACCCTCAA+AGG | - | chr5.3:3603614-3603633 | MS.gene072754:CDS | 50.0% | |
| TGACAAAGGACAGAGTCAGG+TGG | - | chr5.3:3600635-3600654 | MS.gene072754:CDS | 50.0% | |
| TGCTGCTGTTCAATCTGTGC+GGG | - | chr5.3:3602497-3602516 | MS.gene072754:intron | 50.0% | |
| TGTTAGTGCACCACAAGCTG+TGG | - | chr5.3:3602989-3603008 | MS.gene072754:intron | 50.0% | |
| TTCTCCTAGTTCGCCTGATC+AGG | - | chr5.3:3600192-3600211 | MS.gene072754:CDS | 50.0% | |
| ! | CAACTTTTGGCATCAGAGGG+TGG | - | chr5.3:3603395-3603414 | MS.gene072754:CDS | 50.0% |
| ! | GAAGCATCTTGCAGCAATGC+TGG | - | chr5.3:3603455-3603474 | MS.gene072754:CDS | 50.0% |
| ! | GCGACGAAGTCTAGAATCAG+CGG | + | chr5.3:3600113-3600132 | None:intergenic | 50.0% |
| ! | GGGTCAACTTTTGGCATCAG+AGG | - | chr5.3:3603391-3603410 | MS.gene072754:CDS | 50.0% |
| ! | TAGAAAGCGCGAACACGAAG+TGG | + | chr5.3:3601511-3601530 | None:intergenic | 50.0% |
| !! | ATGCAAGTAATGGACCTGGG+AGG | - | chr5.3:3601145-3601164 | MS.gene072754:CDS | 50.0% |
| !! | GAGGCATGCGAGATGGATTT+TGG | + | chr5.3:3600961-3600980 | None:intergenic | 50.0% |
| AAAAGGGGGAAGCAGGGGTT+GGG | + | chr5.3:3601755-3601774 | None:intergenic | 55.0% | |
| AACCCCTCCTCGGCATCAAT+TGG | + | chr5.3:3603221-3603240 | None:intergenic | 55.0% | |
| AGCCAATTGATGCCGAGGAG+GGG | - | chr5.3:3603216-3603235 | MS.gene072754:intron | 55.0% | |
| ATCTGTGCGGGATGAACTCG+AGG | - | chr5.3:3602509-3602528 | MS.gene072754:intron | 55.0% | |
| CAGCCAATTGATGCCGAGGA+GGG | - | chr5.3:3603215-3603234 | MS.gene072754:intron | 55.0% | |
| CCCCTGTCTCCTGCATGTTA+CGG | - | chr5.3:3601698-3601717 | MS.gene072754:intron | 55.0% | |
| CCGTAACATGCAGGAGACAG+GGG | + | chr5.3:3601701-3601720 | None:intergenic | 55.0% | |
| CTCCTCGGCATCAATTGGCT+GGG | + | chr5.3:3603216-3603235 | None:intergenic | 55.0% | |
| CTTGCAGCAATGCTGGATGG+AGG | - | chr5.3:3603462-3603481 | MS.gene072754:CDS | 55.0% | |
| GAACTATTAGGAGTGGCGGC+AGG | + | chr5.3:3602201-3602220 | None:intergenic | 55.0% | |
| GAGACAGGGGTTGTTGTGCA+TGG | + | chr5.3:3601688-3601707 | None:intergenic | 55.0% | |
| GGAGTGGCGGCAGGATTATA+AGG | + | chr5.3:3602192-3602211 | None:intergenic | 55.0% | |
| GTTGCTTCGAGATCGACAGG+CGG | - | chr5.3:3602392-3602411 | MS.gene072754:intron | 55.0% | |
| TAAAAGGGGGAAGCAGGGGT+TGG | + | chr5.3:3601756-3601775 | None:intergenic | 55.0% | |
| TTGCCATCCACTGCCTCACA+GGG | + | chr5.3:3603499-3603518 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGAGGGTAGTGTT+TGG | + | chr5.3:3600009-3600028 | None:intergenic | 55.0% |
| AAAGGGGGAAGCAGGGGTTG+GGG | + | chr5.3:3601754-3601773 | None:intergenic | 60.0% | |
| CCAGCCAATTGATGCCGAGG+AGG | - | chr5.3:3603214-3603233 | MS.gene072754:intron | 60.0% | |
| CCTCCTCGGCATCAATTGGC+TGG | + | chr5.3:3603217-3603236 | None:intergenic | 60.0% | |
| GAAAGGTGGGGAAGGGGAAG+CGG | - | chr5.3:3599835-3599854 | MS.gene072754:CDS | 60.0% | |
| GGGATGAACTCGAGGACGAG+AGG | - | chr5.3:3602517-3602536 | MS.gene072754:intron | 60.0% | |
| GTCCCAGCCAATTGATGCCG+AGG | - | chr5.3:3603211-3603230 | MS.gene072754:intron | 60.0% | |
| GTTGCCATCCACTGCCTCAC+AGG | + | chr5.3:3603500-3603519 | None:intergenic | 60.0% | |
| TAGCCCTGTGAGGCAGTGGA+TGG | - | chr5.3:3603493-3603512 | MS.gene072754:CDS | 60.0% | |
| TCGACAGGCGGATCGACATG+AGG | - | chr5.3:3602404-3602423 | MS.gene072754:intron | 60.0% | |
| ! | GGAATCAGGCTAGCCCTGTG+AGG | - | chr5.3:3603483-3603502 | MS.gene072754:CDS | 60.0% |
| AAGGGGGAAGCAGGGGTTGG+GGG | + | chr5.3:3601753-3601772 | None:intergenic | 65.0% | |
| CCATCTCGCATGCCTCTGCC+TGG | - | chr5.3:3600965-3600984 | MS.gene072754:CDS | 65.0% | |
| CGCGAGCTTCCTGGCAGAGA+CGG | + | chr5.3:3600032-3600051 | None:intergenic | 65.0% | |
| CGTCTCTGCCAGGAAGCTCG+CGG | - | chr5.3:3600030-3600049 | MS.gene072754:CDS | 65.0% | |
| CTTCCTGGCAGAGACGGTGG+TGG | + | chr5.3:3600026-3600045 | None:intergenic | 65.0% | |
| GAAGCTCGCGGCGGCTCTTT+GGG | - | chr5.3:3600042-3600061 | MS.gene072754:CDS | 65.0% | |
| GAGCTTCCTGGCAGAGACGG+TGG | + | chr5.3:3600029-3600048 | None:intergenic | 65.0% | |
| ! | AGGCTAGCCCTGTGAGGCAG+TGG | - | chr5.3:3603489-3603508 | MS.gene072754:CDS | 65.0% |
| ! | CCAGGCAGAGGCATGCGAGA+TGG | + | chr5.3:3600968-3600987 | None:intergenic | 65.0% |
| !! | GCAGAGACGGTGGTGGTGGA+GGG | + | chr5.3:3600019-3600038 | None:intergenic | 65.0% |
| AAGAGCCGCCGCGAGCTTCC+TGG | + | chr5.3:3600041-3600060 | None:intergenic | 70.0% | |
| CCACCACCACCGTCTCTGCC+AGG | - | chr5.3:3600020-3600039 | MS.gene072754:CDS | 70.0% | |
| CTCTGCCAGGAAGCTCGCGG+CGG | - | chr5.3:3600033-3600052 | MS.gene072754:CDS | 70.0% | |
| GGAAGCTCGCGGCGGCTCTT+TGG | - | chr5.3:3600041-3600060 | MS.gene072754:CDS | 70.0% | |
| ! | CCTGGCAGAGACGGTGGTGG+TGG | + | chr5.3:3600023-3600042 | None:intergenic | 70.0% |
| !! | GGCAGAGACGGTGGTGGTGG+AGG | + | chr5.3:3600020-3600039 | None:intergenic | 70.0% |
| GGGAAGCAGGGGTTGGGGGC+AGG | + | chr5.3:3601749-3601768 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3599833 | 3603646 | 3599833 | ID=MS.gene072754 |
| chr5.3 | mRNA | 3599833 | 3603646 | 3599833 | ID=MS.gene072754.t1;Parent=MS.gene072754 |
| chr5.3 | exon | 3603266 | 3603646 | 3603266 | ID=MS.gene072754.t1.exon1;Parent=MS.gene072754.t1 |
| chr5.3 | CDS | 3603266 | 3603646 | 3603266 | ID=cds.MS.gene072754.t1;Parent=MS.gene072754.t1 |
| chr5.3 | exon | 3601746 | 3601871 | 3601746 | ID=MS.gene072754.t1.exon2;Parent=MS.gene072754.t1 |
| chr5.3 | CDS | 3601746 | 3601871 | 3601746 | ID=cds.MS.gene072754.t1;Parent=MS.gene072754.t1 |
| chr5.3 | exon | 3599833 | 3601296 | 3599833 | ID=MS.gene072754.t1.exon3;Parent=MS.gene072754.t1 |
| chr5.3 | CDS | 3599833 | 3601296 | 3599833 | ID=cds.MS.gene072754.t1;Parent=MS.gene072754.t1 |
| Gene Sequence |
| Protein sequence |
