Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072760.t1 | XP_003611048.1 | 89.3 | 308 | 28 | 3 | 103 | 407 | 101 | 406 | 1.00E-119 | 440.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072760.t1 | Q9SH58 | 42.0 | 317 | 143 | 11 | 105 | 388 | 98 | 406 | 3.1e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072760.t1 | G7KBZ0 | 89.3 | 308 | 28 | 3 | 103 | 407 | 101 | 406 | 7.2e-120 | 440.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059300 | MS.gene072760 | 0.802737 | 4.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072760.t1 | MTR_5g009870 | 89.806 | 412 | 31 | 5 | 1 | 407 | 1 | 406 | 0.0 | 597 |
| MS.gene072760.t1 | MTR_8g099045 | 40.842 | 404 | 133 | 14 | 1 | 366 | 1 | 336 | 5.94e-55 | 186 |
| MS.gene072760.t1 | MTR_1g099550 | 32.208 | 385 | 151 | 17 | 1 | 371 | 1 | 289 | 1.04e-36 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072760.t1 | AT1G64080 | 41.611 | 447 | 161 | 20 | 1 | 388 | 1 | 406 | 1.23e-59 | 199 |
| MS.gene072760.t1 | AT5G52870 | 28.571 | 224 | 107 | 6 | 152 | 371 | 93 | 267 | 3.51e-18 | 85.5 |
| MS.gene072760.t1 | AT5G52870 | 28.571 | 224 | 107 | 6 | 152 | 371 | 93 | 267 | 5.43e-18 | 84.3 |
Find 80 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTTCAACTTTCTGATTC+TGG | 0.092598 | 5.3:-3653120 | None:intergenic |
| CTTGATTTCCTTGACAATTC+TGG | 0.186052 | 5.3:-3653887 | None:intergenic |
| TCAAGTGACAAGAGACTTTC+AGG | 0.210690 | 5.3:+3653905 | MS.gene072760:CDS |
| AGAGTTGTTTACAAACATTT+AGG | 0.218894 | 5.3:+3653391 | MS.gene072760:CDS |
| CTAGTTCTTGTTGTTGTTGT+TGG | 0.261778 | 5.3:-3652673 | None:intergenic |
| TATGCACAAGTATTTGAAAA+TGG | 0.291835 | 5.3:+3653192 | MS.gene072760:CDS |
| GTTGTTGTTGTTGGTTGTTA+TGG | 0.299641 | 5.3:-3652664 | None:intergenic |
| CAAGAGTCAGAGTCAGAAAC+AGG | 0.350794 | 5.3:+3653342 | MS.gene072760:CDS |
| GTGAATTGAGGTTTGTTGTT+TGG | 0.372570 | 5.3:-3652902 | None:intergenic |
| GAGTTGTTTACAAACATTTA+GGG | 0.374177 | 5.3:+3653392 | MS.gene072760:CDS |
| TGGTGAAACCTCTTTACATA+AGG | 0.375753 | 5.3:+3653212 | MS.gene072760:CDS |
| ACTTTGAATTTGATTCTCTC+TGG | 0.392176 | 5.3:-3653022 | None:intergenic |
| TTCACCTCTGGATGCATTGA+AGG | 0.393929 | 5.3:-3653542 | None:intergenic |
| TGAACCATCATTATCACCTT+TGG | 0.395194 | 5.3:+3653141 | MS.gene072760:CDS |
| AAGTTTCGTGTCTTCATGTC+TGG | 0.399226 | 5.3:+3652950 | MS.gene072760:CDS |
| TCACTTCTTTCATTGTTTGA+AGG | 0.403278 | 5.3:-3652773 | None:intergenic |
| GGTGAAACCTCTTTACATAA+GGG | 0.408319 | 5.3:+3653213 | MS.gene072760:CDS |
| GGTATTGACGGTGGTGGAAG+TGG | 0.417256 | 5.3:-3652516 | None:intergenic |
| TCTGGTTTGTTTGAGATTTG+TGG | 0.420698 | 5.3:-3653102 | None:intergenic |
| TTCAGTGAGTGATCCATTGC+GGG | 0.421885 | 5.3:+3653856 | MS.gene072760:CDS |
| CGAGGTGGTGGTGCTGTAGT+TGG | 0.425514 | 5.3:+3652470 | MS.gene072760:CDS |
| GAAGAGCCGTTCCGCGTCTT+CGG | 0.437053 | 5.3:+3653414 | MS.gene072760:CDS |
| CAGCAGCAAGATGGAATTCA+AGG | 0.444566 | 5.3:+3653496 | MS.gene072760:CDS |
| CTGTTTCTGACTCTGACTCT+TGG | 0.446943 | 5.3:-3653341 | None:intergenic |
| GGCAATGGCGGCTTCTCCGC+CGG | 0.450419 | 5.3:+3653435 | MS.gene072760:CDS |
| CGAGAAACCCTTATGTAAAG+AGG | 0.451055 | 5.3:-3653220 | None:intergenic |
| GGGAATAATAATATTCCAGC+AGG | 0.451851 | 5.3:+3653364 | MS.gene072760:CDS |
| TTGTCGAGAATGAAGGAAGA+AGG | 0.462443 | 5.3:-3652860 | None:intergenic |
| GAGAATGGTGGTGGTATTGA+CGG | 0.469232 | 5.3:-3652528 | None:intergenic |
| AACAATGAAGCAGTGAATTG+AGG | 0.470671 | 5.3:-3652914 | None:intergenic |
| TTGTTGTTGGTTGTTATGGT+TGG | 0.471851 | 5.3:-3652660 | None:intergenic |
| TCTTCCAAAGGTGATAATGA+TGG | 0.471973 | 5.3:-3653145 | None:intergenic |
| TAAACAACTCTTAGCCCTGC+TGG | 0.473959 | 5.3:-3653379 | None:intergenic |
| GAAGTGGTGGAGTCAGAAGA+AGG | 0.474925 | 5.3:-3652500 | None:intergenic |
| CTTAAATACTGGCGAGGTGG+TGG | 0.477962 | 5.3:+3652458 | MS.gene072760:CDS |
| TCAGAGGATTTATTCTTCAA+AGG | 0.479259 | 5.3:+3652818 | MS.gene072760:CDS |
| CCGTTCCGCGTCTTCGGCAA+TGG | 0.486287 | 5.3:+3653420 | MS.gene072760:CDS |
| TAAATCAAGCCCGGGTGAAA+AGG | 0.488748 | 5.3:+3653261 | MS.gene072760:CDS |
| TCTTTCACTGTCACCTTCAG+AGG | 0.498693 | 5.3:+3652802 | MS.gene072760:CDS |
| GCTTTCAGCGGTGGTGAGAA+TGG | 0.502612 | 5.3:-3652543 | None:intergenic |
| GTTATCTTAAACTCACTCTC+AGG | 0.510009 | 5.3:-3652743 | None:intergenic |
| CCATGGTGATAAATCAAGCC+CGG | 0.510297 | 5.3:+3653252 | MS.gene072760:CDS |
| GTAAACTCTAAGTCAAAGAA+AGG | 0.510667 | 5.3:-3652590 | None:intergenic |
| AGACATGAAGACACGAAACT+TGG | 0.531689 | 5.3:-3652948 | None:intergenic |
| ATTGACGGTGGTGGAAGTGG+TGG | 0.539631 | 5.3:-3652513 | None:intergenic |
| TCTGGTGAAATTTCCCGCAA+TGG | 0.548892 | 5.3:-3653869 | None:intergenic |
| CCATTGCCGAAGACGCGGAA+CGG | 0.554057 | 5.3:-3653420 | None:intergenic |
| GTCGTCGCTGCTTTCAGCGG+TGG | 0.560517 | 5.3:-3652552 | None:intergenic |
| GTTGTTGTTGTCGAGAATGA+AGG | 0.560905 | 5.3:-3652867 | None:intergenic |
| TTCCGCGTCTTCGGCAATGG+CGG | 0.567538 | 5.3:+3653423 | MS.gene072760:CDS |
| GGTGGTGGTATTGACGGTGG+TGG | 0.568497 | 5.3:-3652522 | None:intergenic |
| TTGAAGAATAAATCCTCTGA+AGG | 0.584940 | 5.3:-3652815 | None:intergenic |
| AGCCGCCATTGCCGAAGACG+CGG | 0.585945 | 5.3:-3653425 | None:intergenic |
| GATAGTGAAGATGATGATGA+TGG | 0.588770 | 5.3:+3652713 | MS.gene072760:CDS |
| AAATTTCACCAGAATTGTCA+AGG | 0.590930 | 5.3:+3653879 | MS.gene072760:CDS |
| TTTACATAAGGGTTTCTCGT+AGG | 0.595831 | 5.3:+3653224 | MS.gene072760:CDS |
| AAGAGTCAGAGTCAGAAACA+GGG | 0.601317 | 5.3:+3653343 | MS.gene072760:CDS |
| CATGGTGATAAATCAAGCCC+GGG | 0.603985 | 5.3:+3653253 | MS.gene072760:CDS |
| CTGGTGAAAAGTGAAACAAT+GGG | 0.611998 | 5.3:-3653055 | None:intergenic |
| AGCGACGACAATGATGATGA+AGG | 0.617421 | 5.3:+3652566 | MS.gene072760:CDS |
| TCTGGTGAAAAGTGAAACAA+TGG | 0.618237 | 5.3:-3653056 | None:intergenic |
| AGCGGTGGTGAGAATGGTGG+TGG | 0.618375 | 5.3:-3652537 | None:intergenic |
| AATGGTGGTGGTATTGACGG+TGG | 0.624051 | 5.3:-3652525 | None:intergenic |
| ATTGTCGTCGCTGCTTTCAG+CGG | 0.629569 | 5.3:-3652555 | None:intergenic |
| AGAGTCAGAGTCAGAAACAG+GGG | 0.634295 | 5.3:+3653344 | MS.gene072760:CDS |
| GCTGCAAAAGCGAATCATCA+CGG | 0.637302 | 5.3:-3653477 | None:intergenic |
| CGTTTCGACGACACTAACAC+CGG | 0.649892 | 5.3:-3653454 | None:intergenic |
| GAAGCAGAAATAGCGACGGA+AGG | 0.656677 | 5.3:+3653286 | MS.gene072760:CDS |
| AGTGAAGATGATGATGATGG+TGG | 0.659705 | 5.3:+3652716 | MS.gene072760:CDS |
| CCGGGCTTGATTTATCACCA+TGG | 0.662133 | 5.3:-3653252 | None:intergenic |
| AATGGATCACTCACTGAACG+TGG | 0.662626 | 5.3:-3653851 | None:intergenic |
| GTTTCTCGTAGGTACAGCCA+TGG | 0.666123 | 5.3:+3653235 | MS.gene072760:CDS |
| AGCTTGCTTAAATACTGGCG+AGG | 0.670456 | 5.3:+3652452 | MS.gene072760:CDS |
| GTTCAGTGAGTGATCCATTG+CGG | 0.671555 | 5.3:+3653855 | MS.gene072760:CDS |
| AGATCCTTCAATGCATCCAG+AGG | 0.680000 | 5.3:+3653538 | MS.gene072760:CDS |
| GGAATAATAATATTCCAGCA+GGG | 0.680744 | 5.3:+3653365 | MS.gene072760:CDS |
| TTGCTTAAATACTGGCGAGG+TGG | 0.681386 | 5.3:+3652455 | MS.gene072760:CDS |
| GGTTGAAGCAGAAATAGCGA+CGG | 0.682979 | 5.3:+3653282 | MS.gene072760:CDS |
| TTCGACGACACTAACACCGG+CGG | 0.696268 | 5.3:-3653451 | None:intergenic |
| TTCAGCGGTGGTGAGAATGG+TGG | 0.706931 | 5.3:-3652540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTTAATTAATTT+TGG | + | chr5.3:3653757-3653776 | MS.gene072760:intron | 0.0% |
| !! | AATAAAGACTACATAAAAAA+TGG | - | chr5.3:3653606-3653625 | None:intergenic | 15.0% |
| !! | TAAAAAATGGAATAATTTAG+AGG | - | chr5.3:3653593-3653612 | None:intergenic | 15.0% |
| !!! | TTAATTAATTTTGGTGTAAA+TGG | + | chr5.3:3653766-3653785 | MS.gene072760:intron | 15.0% |
| !!! | TTGATGATATTATATAGTTT+AGG | + | chr5.3:3653685-3653704 | MS.gene072760:intron | 15.0% |
| ! | AGAGTTGTTTACAAACATTT+AGG | + | chr5.3:3653391-3653410 | MS.gene072760:CDS | 25.0% |
| ! | GAGTTGTTTACAAACATTTA+GGG | + | chr5.3:3653392-3653411 | MS.gene072760:CDS | 25.0% |
| ! | TAATTTAGAGGCTAAATTGA+TGG | - | chr5.3:3653581-3653600 | None:intergenic | 25.0% |
| ! | TATGCACAAGTATTTGAAAA+TGG | + | chr5.3:3653192-3653211 | MS.gene072760:CDS | 25.0% |
| AAACCCGTCAATTTAAATTG+AGG | + | chr5.3:3653636-3653655 | MS.gene072760:intron | 30.0% | |
| AAATTTCACCAGAATTGTCA+AGG | + | chr5.3:3653879-3653898 | MS.gene072760:CDS | 30.0% | |
| AACCCGTCAATTTAAATTGA+GGG | + | chr5.3:3653637-3653656 | MS.gene072760:intron | 30.0% | |
| AAGAAGAAGAAGAAGAAGAT+GGG | + | chr5.3:3652627-3652646 | MS.gene072760:CDS | 30.0% | |
| ACTTTGAATTTGATTCTCTC+TGG | - | chr5.3:3653025-3653044 | None:intergenic | 30.0% | |
| AGTCCCTCAATTTAAATTGA+CGG | - | chr5.3:3653643-3653662 | None:intergenic | 30.0% | |
| GGAATAATAATATTCCAGCA+GGG | + | chr5.3:3653365-3653384 | MS.gene072760:CDS | 30.0% | |
| GTAAACTCTAAGTCAAAGAA+AGG | - | chr5.3:3652593-3652612 | None:intergenic | 30.0% | |
| TCACTTCTTTCATTGTTTGA+AGG | - | chr5.3:3652776-3652795 | None:intergenic | 30.0% | |
| TCAGAGGATTTATTCTTCAA+AGG | + | chr5.3:3652818-3652837 | MS.gene072760:CDS | 30.0% | |
| TTGAAGAATAAATCCTCTGA+AGG | - | chr5.3:3652818-3652837 | None:intergenic | 30.0% | |
| !! | CTTCTTTTCAAGAACAGAAT+CGG | - | chr5.3:3652993-3653012 | None:intergenic | 30.0% |
| !! | TTATTCGTTTTATTCACCTC+TGG | - | chr5.3:3653557-3653576 | None:intergenic | 30.0% |
| !!! | CTTTTAGCTTGCTTAAATAC+TGG | + | chr5.3:3652447-3652466 | MS.gene072760:CDS | 30.0% |
| AACAATGAAGCAGTGAATTG+AGG | - | chr5.3:3652917-3652936 | None:intergenic | 35.0% | |
| CATGTTCAACTTTCTGATTC+TGG | - | chr5.3:3653123-3653142 | None:intergenic | 35.0% | |
| CTGGTGAAAAGTGAAACAAT+GGG | - | chr5.3:3653058-3653077 | None:intergenic | 35.0% | |
| CTTGATTTCCTTGACAATTC+TGG | - | chr5.3:3653890-3653909 | None:intergenic | 35.0% | |
| GAAAAACGTTTCTCTTCCAA+AGG | - | chr5.3:3653160-3653179 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+TGG | + | chr5.3:3652620-3652639 | MS.gene072760:CDS | 35.0% | |
| GGGAATAATAATATTCCAGC+AGG | + | chr5.3:3653364-3653383 | MS.gene072760:CDS | 35.0% | |
| GGTGAAACCTCTTTACATAA+GGG | + | chr5.3:3653213-3653232 | MS.gene072760:CDS | 35.0% | |
| GTCCCTCAATTTAAATTGAC+GGG | - | chr5.3:3653642-3653661 | None:intergenic | 35.0% | |
| GTTATCTTAAACTCACTCTC+AGG | - | chr5.3:3652746-3652765 | None:intergenic | 35.0% | |
| TCTGGTGAAAAGTGAAACAA+TGG | - | chr5.3:3653059-3653078 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTTCTTCTTC+AGG | - | chr5.3:3652620-3652639 | None:intergenic | 35.0% | |
| TGAACCATCATTATCACCTT+TGG | + | chr5.3:3653141-3653160 | MS.gene072760:CDS | 35.0% | |
| TGGTGAAACCTCTTTACATA+AGG | + | chr5.3:3653212-3653231 | MS.gene072760:CDS | 35.0% | |
| TTTACATAAGGGTTTCTCGT+AGG | + | chr5.3:3653224-3653243 | MS.gene072760:CDS | 35.0% | |
| ! | GATAGTGAAGATGATGATGA+TGG | + | chr5.3:3652713-3652732 | MS.gene072760:CDS | 35.0% |
| ! | GTTGTTGTTGTTGGTTGTTA+TGG | - | chr5.3:3652667-3652686 | None:intergenic | 35.0% |
| ! | GTTTTCTTCACTTTCAGCTA+CGG | - | chr5.3:3653317-3653336 | None:intergenic | 35.0% |
| ! | TCTTCCAAAGGTGATAATGA+TGG | - | chr5.3:3653148-3653167 | None:intergenic | 35.0% |
| ! | TTGTTGTTGGTTGTTATGGT+TGG | - | chr5.3:3652663-3652682 | None:intergenic | 35.0% |
| !! | CTAGTTCTTGTTGTTGTTGT+TGG | - | chr5.3:3652676-3652695 | None:intergenic | 35.0% |
| !! | GGAAGAGAAACGTTTTTCAA+AGG | + | chr5.3:3653162-3653181 | MS.gene072760:CDS | 35.0% |
| !! | GTGAATTGAGGTTTGTTGTT+TGG | - | chr5.3:3652905-3652924 | None:intergenic | 35.0% |
| !! | TCAAGAACAGAATCGGTTTT+TGG | - | chr5.3:3652986-3653005 | None:intergenic | 35.0% |
| !! | TCTGGTTTGTTTGAGATTTG+TGG | - | chr5.3:3653105-3653124 | None:intergenic | 35.0% |
| !!! | AGATTTGTGGTTGCTGTTTT+TGG | - | chr5.3:3653092-3653111 | None:intergenic | 35.0% |
| AAGAGTCAGAGTCAGAAACA+GGG | + | chr5.3:3653343-3653362 | MS.gene072760:CDS | 40.0% | |
| AAGTTTCGTGTCTTCATGTC+TGG | + | chr5.3:3652950-3652969 | MS.gene072760:CDS | 40.0% | |
| AGACATGAAGACACGAAACT+TGG | - | chr5.3:3652951-3652970 | None:intergenic | 40.0% | |
| CGAGAAACCCTTATGTAAAG+AGG | - | chr5.3:3653223-3653242 | None:intergenic | 40.0% | |
| TCAAGTGACAAGAGACTTTC+AGG | + | chr5.3:3653905-3653924 | MS.gene072760:CDS | 40.0% | |
| TTGTCGAGAATGAAGGAAGA+AGG | - | chr5.3:3652863-3652882 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGTCGAGAATGA+AGG | - | chr5.3:3652870-3652889 | None:intergenic | 40.0% |
| !! | AGTGAAGATGATGATGATGG+TGG | + | chr5.3:3652716-3652735 | MS.gene072760:CDS | 40.0% |
| !!! | GTTTTTGGAACTGTTGTCTC+TGG | - | chr5.3:3653077-3653096 | None:intergenic | 40.0% |
| AATGGATCACTCACTGAACG+TGG | - | chr5.3:3653854-3653873 | None:intergenic | 45.0% | |
| AGAGTCAGAGTCAGAAACAG+GGG | + | chr5.3:3653344-3653363 | MS.gene072760:CDS | 45.0% | |
| AGATCCTTCAATGCATCCAG+AGG | + | chr5.3:3653538-3653557 | MS.gene072760:CDS | 45.0% | |
| CAAGAGTCAGAGTCAGAAAC+AGG | + | chr5.3:3653342-3653361 | MS.gene072760:CDS | 45.0% | |
| CAGCAGCAAGATGGAATTCA+AGG | + | chr5.3:3653496-3653515 | MS.gene072760:CDS | 45.0% | |
| CATGGTGATAAATCAAGCCC+GGG | + | chr5.3:3653253-3653272 | MS.gene072760:CDS | 45.0% | |
| CCATGGTGATAAATCAAGCC+CGG | + | chr5.3:3653252-3653271 | MS.gene072760:CDS | 45.0% | |
| GCTGCAAAAGCGAATCATCA+CGG | - | chr5.3:3653480-3653499 | None:intergenic | 45.0% | |
| GGTTGAAGCAGAAATAGCGA+CGG | + | chr5.3:3653282-3653301 | MS.gene072760:CDS | 45.0% | |
| GTTCAGTGAGTGATCCATTG+CGG | + | chr5.3:3653855-3653874 | MS.gene072760:CDS | 45.0% | |
| TAAACAACTCTTAGCCCTGC+TGG | - | chr5.3:3653382-3653401 | None:intergenic | 45.0% | |
| TAAATCAAGCCCGGGTGAAA+AGG | + | chr5.3:3653261-3653280 | MS.gene072760:CDS | 45.0% | |
| TCTGGTGAAATTTCCCGCAA+TGG | - | chr5.3:3653872-3653891 | None:intergenic | 45.0% | |
| TCTTTCACTGTCACCTTCAG+AGG | + | chr5.3:3652802-3652821 | MS.gene072760:CDS | 45.0% | |
| TTCACCTCTGGATGCATTGA+AGG | - | chr5.3:3653545-3653564 | None:intergenic | 45.0% | |
| TTCAGTGAGTGATCCATTGC+GGG | + | chr5.3:3653856-3653875 | MS.gene072760:CDS | 45.0% | |
| TTGCTTAAATACTGGCGAGG+TGG | + | chr5.3:3652455-3652474 | MS.gene072760:CDS | 45.0% | |
| ! | AGCGACGACAATGATGATGA+AGG | + | chr5.3:3652566-3652585 | MS.gene072760:CDS | 45.0% |
| ! | AGCTTGCTTAAATACTGGCG+AGG | + | chr5.3:3652452-3652471 | MS.gene072760:CDS | 45.0% |
| ! | TCTGCTTCAACCTTTTCACC+CGG | - | chr5.3:3653274-3653293 | None:intergenic | 45.0% |
| !! | CTGTTTCTGACTCTGACTCT+TGG | - | chr5.3:3653344-3653363 | None:intergenic | 45.0% |
| !! | GAGAATGGTGGTGGTATTGA+CGG | - | chr5.3:3652531-3652550 | None:intergenic | 45.0% |
| CCGGGCTTGATTTATCACCA+TGG | - | chr5.3:3653255-3653274 | None:intergenic | 50.0% | |
| CGTTTCGACGACACTAACAC+CGG | - | chr5.3:3653457-3653476 | None:intergenic | 50.0% | |
| CTTAAATACTGGCGAGGTGG+TGG | + | chr5.3:3652458-3652477 | MS.gene072760:CDS | 50.0% | |
| GAAGCAGAAATAGCGACGGA+AGG | + | chr5.3:3653286-3653305 | MS.gene072760:CDS | 50.0% | |
| GTTTCTCGTAGGTACAGCCA+TGG | + | chr5.3:3653235-3653254 | MS.gene072760:CDS | 50.0% | |
| ! | ATTGTCGTCGCTGCTTTCAG+CGG | - | chr5.3:3652558-3652577 | None:intergenic | 50.0% |
| ! | CTGCTTCAACCTTTTCACCC+GGG | - | chr5.3:3653273-3653292 | None:intergenic | 50.0% |
| ! | GAAGTGGTGGAGTCAGAAGA+AGG | - | chr5.3:3652503-3652522 | None:intergenic | 50.0% |
| !! | AATGGTGGTGGTATTGACGG+TGG | - | chr5.3:3652528-3652547 | None:intergenic | 50.0% |
| !! | TCGCTTTTGCAGCAGCAAGA+TGG | + | chr5.3:3653487-3653506 | MS.gene072760:CDS | 50.0% |
| GCTTTCAGCGGTGGTGAGAA+TGG | - | chr5.3:3652546-3652565 | None:intergenic | 55.0% | |
| TTCAGCGGTGGTGAGAATGG+TGG | - | chr5.3:3652543-3652562 | None:intergenic | 55.0% | |
| TTCGACGACACTAACACCGG+CGG | - | chr5.3:3653454-3653473 | None:intergenic | 55.0% | |
| !! | ATTGACGGTGGTGGAAGTGG+TGG | - | chr5.3:3652516-3652535 | None:intergenic | 55.0% |
| !! | GGTATTGACGGTGGTGGAAG+TGG | - | chr5.3:3652519-3652538 | None:intergenic | 55.0% |
| AGCGGTGGTGAGAATGGTGG+TGG | - | chr5.3:3652540-3652559 | None:intergenic | 60.0% | |
| CCATTGCCGAAGACGCGGAA+CGG | - | chr5.3:3653423-3653442 | None:intergenic | 60.0% | |
| GAAGAGCCGTTCCGCGTCTT+CGG | + | chr5.3:3653414-3653433 | MS.gene072760:CDS | 60.0% | |
| TTCCGCGTCTTCGGCAATGG+CGG | + | chr5.3:3653423-3653442 | MS.gene072760:CDS | 60.0% | |
| !! | CGAGGTGGTGGTGCTGTAGT+TGG | + | chr5.3:3652470-3652489 | MS.gene072760:CDS | 60.0% |
| !! | GGTGGTGGTATTGACGGTGG+TGG | - | chr5.3:3652525-3652544 | None:intergenic | 60.0% |
| AGCCGCCATTGCCGAAGACG+CGG | - | chr5.3:3653428-3653447 | None:intergenic | 65.0% | |
| CCGTTCCGCGTCTTCGGCAA+TGG | + | chr5.3:3653420-3653439 | MS.gene072760:CDS | 65.0% | |
| ! | GTCGTCGCTGCTTTCAGCGG+TGG | - | chr5.3:3652555-3652574 | None:intergenic | 65.0% |
| GGCAATGGCGGCTTCTCCGC+CGG | + | chr5.3:3653435-3653454 | MS.gene072760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3652440 | 3653931 | 3652440 | ID=MS.gene072760 |
| chr5.3 | mRNA | 3652440 | 3653931 | 3652440 | ID=MS.gene072760.t1;Parent=MS.gene072760 |
| chr5.3 | exon | 3652440 | 3653559 | 3652440 | ID=MS.gene072760.t1.exon1;Parent=MS.gene072760.t1 |
| chr5.3 | CDS | 3652440 | 3653559 | 3652440 | ID=cds.MS.gene072760.t1;Parent=MS.gene072760.t1 |
| chr5.3 | exon | 3653828 | 3653931 | 3653828 | ID=MS.gene072760.t1.exon2;Parent=MS.gene072760.t1 |
| chr5.3 | CDS | 3653828 | 3653931 | 3653828 | ID=cds.MS.gene072760.t1;Parent=MS.gene072760.t1 |
| Gene Sequence |
| Protein sequence |
