AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072844

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072844.t1 MTR_3g106290 98.413 189 3 0 1 189 1 189 1.45e-140 389
MS.gene072844.t1 MTR_4g008860 66.667 192 56 3 1 184 1 192 1.91e-77 230
MS.gene072844.t1 MTR_4g010640 58.586 99 26 1 6 89 5 103 2.23e-34 121
MS.gene072844.t1 MTR_4g114570 58.947 95 28 1 6 89 5 99 6.15e-33 117
MS.gene072844.t1 MTR_2g103700 65.556 90 25 1 6 89 5 94 2.92e-32 114
MS.gene072844.t1 MTR_3g074130 38.095 147 77 3 1 139 143 283 4.97e-24 97.1
MS.gene072844.t1 MTR_8g092460 56.164 73 32 0 3 75 140 212 9.86e-24 95.9
MS.gene072844.t1 MTR_2g078680 48.598 107 42 3 7 100 30 136 1.15e-23 93.2
MS.gene072844.t1 MTR_8g090350 55.422 83 29 2 2 77 107 188 5.37e-23 93.2
MS.gene072844.t1 MTR_1g090170 56.790 81 34 1 8 87 152 232 6.96e-23 93.6
MS.gene072844.t1 MTR_1g012470 37.681 207 80 5 5 175 4 197 7.32e-23 90.9
MS.gene072844.t1 MTR_5g062700 52.874 87 38 1 3 86 168 254 7.40e-23 94.4
MS.gene072844.t1 MTR_2g089170 71.930 57 16 0 8 64 65 121 8.65e-23 90.5
MS.gene072844.t1 MTR_1g090170 57.500 80 33 1 8 86 239 318 1.35e-22 94.0
MS.gene072844.t1 MTR_3g053690 63.333 60 22 0 5 64 24 83 5.19e-22 89.4
MS.gene072844.t1 MTR_7g020980 64.912 57 20 0 8 64 51 107 6.45e-22 87.8
MS.gene072844.t1 MTR_3g107380 64.000 75 27 0 1 75 1 75 8.43e-22 88.6
MS.gene072844.t1 MTR_7g021010 64.912 57 20 0 8 64 51 107 8.68e-22 87.4
MS.gene072844.t1 MTR_7g021010 64.912 57 20 0 8 64 12 68 9.95e-22 86.3
MS.gene072844.t1 MTR_4g078710 57.143 70 29 1 8 76 28 97 1.16e-21 88.2
MS.gene072844.t1 MTR_6g012970 56.471 85 32 2 3 86 33 113 1.88e-21 90.5
MS.gene072844.t1 MTR_2g435590 55.072 69 31 0 8 76 96 164 2.27e-21 88.6
MS.gene072844.t1 MTR_2g090235 60.563 71 21 1 1 64 204 274 3.00e-21 90.1
MS.gene072844.t1 MTR_2g014340 59.016 61 25 0 5 65 16 76 6.69e-21 85.9
MS.gene072844.t1 MTR_0939s0010 66.667 57 19 0 8 64 65 121 1.29e-20 85.1
MS.gene072844.t1 MTR_7g084370 58.904 73 30 0 7 79 41 113 1.38e-20 86.7
MS.gene072844.t1 MTR_7g011630 51.163 86 40 1 3 88 37 120 1.70e-20 88.2
MS.gene072844.t1 MTR_5g083340 63.333 60 22 0 5 64 82 141 2.32e-20 87.4
MS.gene072844.t1 MTR_5g082950 66.667 57 19 0 7 63 65 121 2.36e-20 87.0
MS.gene072844.t1 MTR_7g092190 63.793 58 21 0 8 65 30 87 3.39e-20 85.9
MS.gene072844.t1 MTR_4g086220 66.667 57 19 0 8 64 96 152 4.10e-20 84.7
MS.gene072844.t1 MTR_2g105380 48.837 86 38 2 5 84 114 199 4.64e-20 86.3
MS.gene072844.t1 MTR_2g014300 61.667 60 23 0 8 67 15 74 5.67e-20 82.8
MS.gene072844.t1 MTR_8g022820 54.412 68 31 0 5 72 121 188 7.14e-20 85.9
MS.gene072844.t1 MTR_8g022820 54.412 68 31 0 5 72 121 188 7.14e-20 85.9
MS.gene072844.t1 MTR_8g022820 54.412 68 31 0 5 72 120 187 7.61e-20 85.9
MS.gene072844.t1 MTR_1g087920 61.404 57 22 0 8 64 77 133 8.16e-20 85.1
MS.gene072844.t1 MTR_4g086160 64.912 57 20 0 8 64 96 152 9.75e-20 83.6
MS.gene072844.t1 MTR_4g086165 61.667 60 23 0 5 64 79 138 1.09e-19 82.8
MS.gene072844.t1 MTR_5g083330 56.944 72 28 1 5 76 32 100 1.20e-19 84.3
MS.gene072844.t1 MTR_4g086190 64.912 57 20 0 8 64 96 152 1.94e-19 82.8
MS.gene072844.t1 MTR_4g111915 58.333 60 25 0 5 64 50 109 2.52e-19 80.1
MS.gene072844.t1 MTR_5g009620 52.632 76 35 1 4 79 108 182 2.97e-19 83.6
MS.gene072844.t1 MTR_5g032820 66.102 59 20 0 7 65 45 103 4.65e-19 83.6
MS.gene072844.t1 MTR_1g014780 31.638 177 106 3 8 169 38 214 4.77e-19 81.6
MS.gene072844.t1 MTR_4g112490 58.333 60 25 0 5 64 50 109 1.05e-18 80.1
MS.gene072844.t1 MTR_8g099215 48.889 90 44 1 6 93 105 194 1.06e-18 82.0
MS.gene072844.t1 MTR_4g082345 60.656 61 24 0 3 63 43 103 1.13e-18 82.0
MS.gene072844.t1 MTR_5g012910 63.158 57 21 0 8 64 28 84 1.27e-18 79.3
MS.gene072844.t1 MTR_2g016730 58.065 62 26 0 2 63 17 78 1.82e-18 81.6
MS.gene072844.t1 MTR_5g085100 60.345 58 23 0 7 64 45 102 2.10e-18 80.9
MS.gene072844.t1 MTR_6g088405 64.912 57 20 0 8 64 44 100 2.11e-18 79.7
MS.gene072844.t1 MTR_3g110205 64.912 57 20 0 8 64 43 99 2.22e-18 79.0
MS.gene072844.t1 MTR_4g100380 53.425 73 33 1 6 77 143 215 2.33e-18 80.5
MS.gene072844.t1 MTR_4g035430 63.158 57 21 0 8 64 32 88 2.74e-18 79.3
MS.gene072844.t1 MTR_5g075570 53.125 64 30 0 1 64 117 180 3.03e-18 80.5
MS.gene072844.t1 MTR_7g085810 62.069 58 22 0 6 63 28 85 3.84e-18 79.7
MS.gene072844.t1 MTR_8g069360 64.407 59 21 0 7 65 43 101 3.95e-18 81.3
MS.gene072844.t1 MTR_8g006815 54.286 70 29 2 6 72 94 163 5.95e-18 78.2
MS.gene072844.t1 MTR_8g085960 43.617 94 50 1 1 94 18 108 6.99e-18 78.6
MS.gene072844.t1 MTR_5g085070 60.345 58 23 0 7 64 50 107 7.08e-18 79.3
MS.gene072844.t1 MTR_7g046260 64.912 57 20 0 8 64 61 117 8.54e-18 78.6
MS.gene072844.t1 MTR_7g117690 59.649 57 23 0 8 64 28 84 8.61e-18 77.0
MS.gene072844.t1 MTR_8g013860 59.677 62 25 0 8 69 47 108 8.78e-18 77.8
MS.gene072844.t1 MTR_3g090760 58.621 58 24 0 6 63 111 168 1.08e-17 79.7
MS.gene072844.t1 MTR_8g102800 64.912 57 20 0 8 64 37 93 1.12e-17 78.2
MS.gene072844.t1 MTR_4g100650 63.158 57 21 0 8 64 74 130 1.20e-17 78.6
MS.gene072844.t1 MTR_2g043050 55.000 60 27 0 8 67 19 78 1.83e-17 77.0
MS.gene072844.t1 MTR_1g014860 56.667 60 26 0 8 67 22 81 2.37e-17 77.0
MS.gene072844.t1 MTR_4g119270 54.688 64 29 0 7 70 52 115 2.49e-17 78.6
MS.gene072844.t1 MTR_4g100420 46.512 86 41 2 5 89 154 235 2.68e-17 78.2
MS.gene072844.t1 MTR_1g014820 56.667 60 26 0 8 67 27 86 4.12e-17 77.0
MS.gene072844.t1 MTR_7g070220 58.730 63 19 1 8 63 78 140 4.22e-17 78.6
MS.gene072844.t1 MTR_4g100450 56.923 65 27 1 5 68 151 215 4.91e-17 77.4
MS.gene072844.t1 MTR_3g102100 56.140 57 25 0 8 64 45 101 5.06e-17 75.1
MS.gene072844.t1 MTR_1g070070 60.000 60 23 1 7 65 20 79 5.24e-17 74.3
MS.gene072844.t1 MTR_1g014800 55.000 60 27 0 8 67 31 90 6.03e-17 75.9
MS.gene072844.t1 MTR_8g027465 57.895 57 24 0 8 64 39 95 6.11e-17 75.1
MS.gene072844.t1 MTR_6g029180 57.627 59 25 0 5 63 30 88 7.24e-17 77.0
MS.gene072844.t1 MTR_2g101340 61.404 57 22 0 8 64 41 97 9.34e-17 75.1
MS.gene072844.t1 MTR_5g016750 53.333 60 28 0 5 64 22 81 1.08e-16 74.3
MS.gene072844.t1 MTR_1g048610 54.839 62 27 1 6 66 87 148 1.31e-16 75.1
MS.gene072844.t1 MTR_8g006410 61.404 57 22 0 8 64 52 108 1.33e-16 74.7
MS.gene072844.t1 MTR_2g043030 53.333 60 28 0 8 67 19 78 1.33e-16 74.7
MS.gene072844.t1 MTR_8g032610 58.621 58 24 0 6 63 25 82 2.07e-16 75.9
MS.gene072844.t1 MTR_4g088005 53.968 63 28 1 5 66 54 116 2.21e-16 72.0
MS.gene072844.t1 MTR_2g019750 36.842 114 65 2 7 120 49 155 2.23e-16 75.5
MS.gene072844.t1 MTR_3g105510 43.590 78 41 1 3 77 32 109 3.04e-16 74.3
MS.gene072844.t1 MTR_1g028560 50.000 74 35 1 5 76 112 185 3.56e-16 75.5
MS.gene072844.t1 MTR_1g097190 53.521 71 31 2 2 71 17 86 3.58e-16 72.0
MS.gene072844.t1 MTR_1g074310 54.688 64 28 1 2 64 15 78 4.41e-16 72.0
MS.gene072844.t1 MTR_8g006840 49.296 71 35 1 8 77 125 195 8.54e-16 72.4
MS.gene072844.t1 MTR_2g015040 54.098 61 27 1 5 64 60 120 1.52e-15 70.9
MS.gene072844.t1 MTR_1g019110 54.386 57 26 0 8 64 44 100 1.55e-15 71.2
MS.gene072844.t1 MTR_2g043040 51.667 60 29 0 8 67 19 78 2.02e-15 72.0
MS.gene072844.t1 MTR_2g015050 53.968 63 28 1 3 64 129 191 3.29e-15 72.0
MS.gene072844.t1 MTR_4g054360 56.897 58 24 1 8 64 124 181 3.70e-15 72.0
MS.gene072844.t1 MTR_1g090290 50.704 71 28 2 1 64 100 170 6.33e-15 70.1
MS.gene072844.t1 MTR_7g081815 52.459 61 28 1 6 65 59 119 6.35e-15 70.1
MS.gene072844.t1 MTR_4g054740 55.172 58 25 1 8 64 97 154 7.01e-15 70.5
MS.gene072844.t1 MTR_2g438180 59.322 59 23 1 7 64 13 71 9.02e-15 68.2
MS.gene072844.t1 MTR_7g081795 52.459 61 28 1 6 65 58 118 1.04e-14 69.7
MS.gene072844.t1 MTR_7g096750 57.377 61 25 1 5 64 17 77 1.07e-14 68.2
MS.gene072844.t1 MTR_7g081805 52.459 61 28 1 6 65 59 119 1.17e-14 69.7
MS.gene072844.t1 MTR_1g070035 51.613 62 29 1 5 65 74 135 1.24e-14 69.7
MS.gene072844.t1 MTR_8g006825 50.820 61 29 1 6 65 94 154 2.19e-14 68.9
MS.gene072844.t1 MTR_1g074230 59.322 59 23 1 7 64 18 76 2.23e-14 67.4
MS.gene072844.t1 MTR_7g096700 56.667 60 25 1 7 65 19 78 2.91e-14 67.0
MS.gene072844.t1 MTR_2g043020 50.000 60 30 0 8 67 19 78 3.37e-14 68.2
MS.gene072844.t1 MTR_1g101600 60.714 56 22 0 8 63 41 96 3.42e-14 68.2
MS.gene072844.t1 MTR_6g465460 60.714 56 22 0 8 63 54 109 3.65e-14 69.3
MS.gene072844.t1 MTR_6g465850 60.714 56 22 0 8 63 63 118 3.86e-14 69.3
MS.gene072844.t1 MTR_6g465510 60.714 56 22 0 8 63 33 88 4.30e-14 68.2
MS.gene072844.t1 MTR_3g105480 46.479 71 35 1 10 77 33 103 4.73e-14 68.2
MS.gene072844.t1 MTR_6g465690 58.929 56 23 0 8 63 63 118 6.15e-14 68.6
MS.gene072844.t1 MTR_5g008590 68.421 57 18 0 8 64 11 67 6.32e-14 67.0
MS.gene072844.t1 MTR_6g465450 58.929 56 23 0 8 63 54 109 6.54e-14 68.2
MS.gene072844.t1 MTR_6g465530 60.714 56 22 0 8 63 33 88 7.46e-14 67.0
MS.gene072844.t1 MTR_6g466130 58.929 56 23 0 8 63 66 121 1.05e-13 67.4
MS.gene072844.t1 MTR_6g466000 58.929 56 23 0 8 63 57 112 1.33e-13 67.0
MS.gene072844.t1 MTR_1g105400 46.774 62 32 1 3 64 110 170 1.64e-13 68.2
MS.gene072844.t1 MTR_1g069985 53.333 60 27 1 5 63 72 131 1.65e-13 66.6
MS.gene072844.t1 MTR_6g465430 58.929 56 23 0 8 63 54 109 2.19e-13 66.6
MS.gene072844.t1 MTR_1g006660 65.517 58 20 0 8 65 47 104 3.91e-13 66.2
MS.gene072844.t1 MTR_6g465420 57.143 56 24 0 8 63 54 109 4.18e-13 66.2
MS.gene072844.t1 MTR_4g054860 36.154 130 75 4 9 134 132 257 5.20e-13 65.9
MS.gene072844.t1 MTR_7g028925 53.333 60 25 1 8 67 29 85 5.55e-13 62.4
MS.gene072844.t1 MTR_1g070015 54.386 57 25 1 8 63 84 140 7.02e-13 65.1
MS.gene072844.t1 MTR_6g088425 66.667 57 19 0 8 64 49 105 7.08e-13 65.1
MS.gene072844.t1 MTR_3g095190 62.903 62 23 0 5 66 167 228 7.13e-13 66.2
MS.gene072844.t1 MTR_1g074250 53.333 60 26 1 7 64 18 77 7.81e-13 62.8
MS.gene072844.t1 MTR_1g070020 50.000 62 30 1 3 63 65 126 9.06e-13 64.7
MS.gene072844.t1 MTR_1g070000 54.545 55 24 1 10 63 86 140 1.05e-12 64.7
MS.gene072844.t1 MTR_3g112440 57.377 61 26 0 4 64 35 95 1.36e-12 64.3
MS.gene072844.t1 MTR_1g023170 59.649 57 23 0 8 64 40 96 1.45e-12 64.7
MS.gene072844.t1 MTR_5g085125 40.449 89 51 1 7 93 15 103 1.49e-12 63.2
MS.gene072844.t1 MTR_8g023680 57.447 47 19 1 7 53 115 160 2.05e-12 64.7
MS.gene072844.t1 MTR_1g070045 54.386 57 25 1 8 63 66 122 2.07e-12 62.8
MS.gene072844.t1 MTR_1g110970 30.303 132 72 4 7 119 96 226 2.94e-12 64.3
MS.gene072844.t1 MTR_3g098580 64.912 57 20 0 8 64 76 132 4.30e-12 63.2
MS.gene072844.t1 MTR_1g069960 58.333 72 29 1 5 75 24 95 4.51e-12 61.2
MS.gene072844.t1 MTR_5g008790 49.206 63 26 2 6 64 16 76 6.54e-12 61.2
MS.gene072844.t1 MTR_7g096810 51.852 81 29 2 5 75 10 90 7.37e-12 60.5
MS.gene072844.t1 MTR_4g102670 54.386 57 25 1 8 64 15 70 9.92e-12 60.8
MS.gene072844.t1 MTR_6g466020 53.571 56 26 0 8 63 43 98 1.03e-11 61.2
MS.gene072844.t1 MTR_5g008470 54.545 55 25 0 10 64 77 131 1.18e-11 60.8
MS.gene072844.t1 MTR_3g072610 55.072 69 30 1 5 73 22 89 1.62e-11 61.2
MS.gene072844.t1 MTR_8g023700 58.537 41 17 0 8 48 117 157 1.76e-11 62.0
MS.gene072844.t1 MTR_5g057810 55.556 45 20 0 3 47 83 127 3.01e-11 61.2
MS.gene072844.t1 MTR_5g057647 55.556 45 20 0 3 47 83 127 3.01e-11 61.2
MS.gene072844.t1 MTR_5g058470 60.656 61 23 1 5 64 93 153 4.01e-11 60.8
MS.gene072844.t1 MTR_4g009260 64.407 59 21 0 5 63 74 132 4.23e-11 59.7
MS.gene072844.t1 MTR_2g085015 54.237 59 25 2 8 64 47 105 8.24e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072844.t1 AT5G25190 66.321 193 48 3 1 189 1 180 8.40e-83 243
MS.gene072844.t1 AT1G15360 72.464 69 19 0 6 74 5 73 2.27e-32 115
MS.gene072844.t1 AT1G15360 72.464 69 19 0 6 74 5 73 2.27e-32 115
MS.gene072844.t1 AT5G25390 40.722 194 72 9 6 176 5 178 2.05e-29 107
MS.gene072844.t1 AT5G25390 39.691 194 71 10 6 176 5 175 4.72e-26 99.0
MS.gene072844.t1 AT1G22190 52.941 85 37 1 2 86 77 158 9.23e-24 94.7
MS.gene072844.t1 AT5G65130 53.571 84 37 1 3 86 108 189 2.37e-23 94.0
MS.gene072844.t1 AT5G65130 53.571 84 37 1 3 86 106 187 2.47e-23 94.0
MS.gene072844.t1 AT1G78080 41.259 143 77 3 2 143 146 282 3.54e-23 94.7
MS.gene072844.t1 AT1G36060 51.648 91 39 2 1 86 136 226 1.37e-22 92.8
MS.gene072844.t1 AT3G15210 67.241 58 19 0 7 64 24 81 1.67e-22 90.5
MS.gene072844.t1 AT4G13620 52.747 91 31 2 4 94 228 306 2.41e-22 92.8
MS.gene072844.t1 AT4G39780 66.667 60 20 0 5 64 90 149 6.86e-22 90.1
MS.gene072844.t1 AT5G11190 58.242 91 24 1 6 82 5 95 7.85e-22 88.2
MS.gene072844.t1 AT2G22200 61.905 63 24 0 2 64 65 127 7.89e-22 89.7
MS.gene072844.t1 AT3G20310 48.352 91 43 1 5 95 24 110 8.33e-22 89.4
MS.gene072844.t1 AT5G44210 61.290 62 24 0 3 64 28 89 4.18e-21 86.7
MS.gene072844.t1 AT5G13910 57.534 73 31 0 7 79 19 91 7.76e-21 85.9
MS.gene072844.t1 AT3G11020 68.421 57 18 0 8 64 78 134 1.10e-20 87.8
MS.gene072844.t1 AT5G13330 62.903 62 22 1 4 64 34 95 2.02e-20 85.1
MS.gene072844.t1 AT1G21910 45.794 107 44 2 8 114 50 142 2.04e-20 85.5
MS.gene072844.t1 AT1G28370 60.317 63 24 1 7 68 19 81 2.94e-20 83.6
MS.gene072844.t1 AT5G05410 51.220 82 39 1 8 89 79 159 2.99e-20 86.3
MS.gene072844.t1 AT1G28370 60.317 63 24 1 7 68 57 119 3.27e-20 84.3
MS.gene072844.t1 AT2G20880 66.667 57 19 0 8 64 187 243 3.56e-20 86.7
MS.gene072844.t1 AT1G28360 63.158 57 21 0 8 64 12 68 4.04e-20 83.6
MS.gene072844.t1 AT5G61890 64.912 57 20 0 8 64 90 146 4.06e-20 85.1
MS.gene072844.t1 AT5G05410 51.220 82 39 1 8 89 79 159 4.40e-20 86.3
MS.gene072844.t1 AT1G50640 60.000 60 24 0 7 66 27 86 4.49e-20 84.3
MS.gene072844.t1 AT2G40340 38.235 136 81 1 8 143 14 146 6.15e-20 85.1
MS.gene072844.t1 AT2G40340 38.235 136 81 1 8 143 14 146 6.15e-20 85.1
MS.gene072844.t1 AT2G40340 38.235 136 81 1 8 143 14 146 6.15e-20 85.1
MS.gene072844.t1 AT1G72360 58.621 58 24 0 7 64 24 81 7.38e-20 83.6
MS.gene072844.t1 AT1G03800 60.345 58 23 0 7 64 52 109 7.66e-20 84.0
MS.gene072844.t1 AT1G19210 55.385 65 29 0 5 69 9 73 9.10e-20 82.8
MS.gene072844.t1 AT1G24590 66.102 59 20 0 7 65 57 115 9.68e-20 84.7
MS.gene072844.t1 AT2G47520 53.623 69 31 1 8 76 50 117 1.02e-19 82.0
MS.gene072844.t1 AT1G12980 48.889 90 46 0 7 96 56 145 1.18e-19 85.1
MS.gene072844.t1 AT2G40340 38.235 136 81 1 8 143 79 211 1.38e-19 85.1
MS.gene072844.t1 AT2G40340 38.235 136 81 1 8 143 72 204 1.39e-19 84.7
MS.gene072844.t1 AT1G72360 58.621 58 24 0 7 64 73 130 2.09e-19 83.2
MS.gene072844.t1 AT1G72360 58.621 58 24 0 7 64 75 132 2.24e-19 83.2
MS.gene072844.t1 AT2G33710 60.000 60 24 0 5 64 67 126 2.31e-19 82.4
MS.gene072844.t1 AT1G71450 53.488 86 36 1 8 89 24 109 2.35e-19 81.6
MS.gene072844.t1 AT2G33710 60.000 60 24 0 5 64 67 126 3.06e-19 82.4
MS.gene072844.t1 AT2G40340 49.367 79 37 1 8 86 72 147 3.15e-19 83.6
MS.gene072844.t1 AT4G32800 65.000 60 21 0 5 64 16 75 4.13e-19 81.6
MS.gene072844.t1 AT4G06746 55.000 60 27 0 5 64 33 92 4.89e-19 79.7
MS.gene072844.t1 AT1G12890 57.812 64 27 0 7 70 20 83 5.06e-19 81.3
MS.gene072844.t1 AT1G74930 55.556 63 28 0 5 67 18 80 5.47e-19 80.9
MS.gene072844.t1 AT3G16280 66.667 57 19 0 8 64 61 117 8.09e-19 81.3
MS.gene072844.t1 AT3G16280 66.667 57 19 0 8 64 79 135 1.01e-18 81.3
MS.gene072844.t1 AT2G35700 64.912 57 20 0 8 64 45 101 1.04e-18 80.1
MS.gene072844.t1 AT4G27950 58.730 63 26 0 5 67 115 177 1.14e-18 82.4
MS.gene072844.t1 AT5G19790 60.294 68 26 1 7 73 21 88 1.63e-18 80.9
MS.gene072844.t1 AT4G16750 61.667 60 23 0 5 64 37 96 1.75e-18 79.0
MS.gene072844.t1 AT4G11140 34.711 121 76 1 6 123 85 205 2.10e-18 80.9
MS.gene072844.t1 AT5G18560 60.656 61 24 0 7 67 54 114 2.15e-18 81.6
MS.gene072844.t1 AT2G44940 66.667 57 19 0 8 64 100 156 2.27e-18 80.9
MS.gene072844.t1 AT5G21960 57.377 61 26 0 7 67 6 66 2.45e-18 79.7
MS.gene072844.t1 AT5G11590 66.667 57 19 0 8 64 51 107 2.67e-18 79.7
MS.gene072844.t1 AT5G47220 53.333 75 34 1 6 79 115 189 2.70e-18 80.1
MS.gene072844.t1 AT1G28160 53.425 73 34 0 7 79 38 110 2.88e-18 80.1
MS.gene072844.t1 AT4G17500 60.938 64 24 1 6 68 146 209 3.61e-18 80.1
MS.gene072844.t1 AT3G16770 57.895 57 24 0 8 64 79 135 3.71e-18 79.7
MS.gene072844.t1 AT3G57600 44.681 94 46 2 7 94 27 120 4.37e-18 80.1
MS.gene072844.t1 AT4G28140 61.404 57 22 0 8 64 143 199 4.90e-18 80.1
MS.gene072844.t1 AT4G23750 50.000 66 33 0 5 70 119 184 1.12e-17 79.7
MS.gene072844.t1 AT4G23750 50.000 66 33 0 5 70 119 184 1.12e-17 79.7
MS.gene072844.t1 AT2G25820 64.912 57 20 0 8 64 26 82 1.30e-17 77.8
MS.gene072844.t1 AT5G25810 63.158 57 21 0 8 64 36 92 1.43e-17 77.4
MS.gene072844.t1 AT3G61630 62.069 58 22 0 6 63 103 160 1.59e-17 79.0
MS.gene072844.t1 AT5G53290 60.345 58 23 0 6 63 123 180 2.51e-17 79.0
MS.gene072844.t1 AT3G60490 63.158 57 21 0 8 64 71 127 3.49e-17 77.4
MS.gene072844.t1 AT1G75490 57.895 57 24 0 8 64 42 98 4.43e-17 75.9
MS.gene072844.t1 AT4G36900 56.140 57 25 0 8 64 30 86 5.24e-17 75.5
MS.gene072844.t1 AT1G01250 59.649 57 23 0 8 64 45 101 6.05e-17 75.5
MS.gene072844.t1 AT5G18450 39.048 105 64 0 8 112 34 138 7.39e-17 77.0
MS.gene072844.t1 AT5G47230 57.377 61 25 1 5 64 153 213 8.88e-17 76.6
MS.gene072844.t1 AT2G23340 56.140 57 25 0 8 64 28 84 9.15e-17 74.3
MS.gene072844.t1 AT3G23230 54.167 72 30 2 5 73 17 88 1.11e-16 73.2
MS.gene072844.t1 AT5G67190 44.872 78 43 0 8 85 21 98 1.41e-16 74.3
MS.gene072844.t1 AT1G22985 52.000 75 32 2 5 76 72 145 1.62e-16 73.6
MS.gene072844.t1 AT4G25490 66.071 56 19 0 8 63 48 103 1.66e-16 74.7
MS.gene072844.t1 AT2G46310 59.649 57 23 0 7 63 98 154 1.87e-16 75.9
MS.gene072844.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.17e-16 72.8
MS.gene072844.t1 AT5G51190 44.706 85 46 1 5 88 69 153 2.17e-16 74.3
MS.gene072844.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.29e-16 72.8
MS.gene072844.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.29e-16 72.8
MS.gene072844.t1 AT2G40350 53.333 60 28 0 8 67 74 133 2.31e-16 73.2
MS.gene072844.t1 AT2G40350 53.333 60 28 0 8 67 67 126 2.50e-16 72.8
MS.gene072844.t1 AT4G31060 39.831 118 63 3 8 117 27 144 2.72e-16 73.6
MS.gene072844.t1 AT1G68550 34.615 130 74 3 2 127 107 229 5.14e-16 74.7
MS.gene072844.t1 AT1G68550 34.615 130 74 3 2 127 107 229 5.14e-16 74.7
MS.gene072844.t1 AT2G44840 53.030 66 27 2 4 65 85 150 5.22e-16 73.6
MS.gene072844.t1 AT5G43410 52.239 67 31 1 7 72 14 80 6.24e-16 71.2
MS.gene072844.t1 AT4G25470 64.286 56 20 0 8 63 51 106 7.53e-16 72.8
MS.gene072844.t1 AT4G17490 55.738 61 26 1 5 64 134 194 8.33e-16 73.9
MS.gene072844.t1 AT5G07580 58.333 60 24 1 8 66 110 169 1.17e-15 72.4
MS.gene072844.t1 AT3G50260 50.877 57 28 0 8 64 21 77 1.92e-15 70.5
MS.gene072844.t1 AT4G25480 62.500 56 21 0 8 63 51 106 2.30e-15 71.6
MS.gene072844.t1 AT5G61600 50.725 69 33 1 8 75 88 156 3.54e-15 71.6
MS.gene072844.t1 AT1G71130 52.239 67 27 1 2 63 73 139 4.79e-15 69.7
MS.gene072844.t1 AT1G22810 31.655 139 67 4 5 139 11 125 1.17e-14 68.2
MS.gene072844.t1 AT5G64750 59.259 54 22 0 13 66 190 243 1.24e-14 71.2
MS.gene072844.t1 AT5G51990 60.714 56 22 0 8 63 54 109 2.05e-14 69.3
MS.gene072844.t1 AT2G36450 60.345 58 22 1 8 64 15 72 2.82e-14 68.2
MS.gene072844.t1 AT5G07310 43.333 90 51 0 8 97 92 181 6.26e-14 68.6
MS.gene072844.t1 AT2G38340 55.072 69 23 1 4 64 66 134 6.37e-14 68.2
MS.gene072844.t1 AT1G53170 51.250 80 39 0 7 86 30 109 8.27e-14 67.0
MS.gene072844.t1 AT3G23240 51.613 62 29 1 3 63 77 138 8.31e-14 67.4
MS.gene072844.t1 AT1G43160 62.121 66 24 1 1 66 55 119 9.43e-14 67.0
MS.gene072844.t1 AT1G71520 47.761 67 27 2 5 65 11 75 1.68e-13 65.1
MS.gene072844.t1 AT3G14230 43.966 116 59 2 5 119 121 231 2.42e-13 67.8
MS.gene072844.t1 AT3G14230 43.966 116 59 2 5 119 125 235 2.52e-13 67.8
MS.gene072844.t1 AT3G14230 43.966 116 59 2 5 119 120 230 2.56e-13 67.4
MS.gene072844.t1 AT2G31230 50.820 61 29 1 5 64 83 143 3.15e-13 66.2
MS.gene072844.t1 AT1G77200 61.905 63 24 0 2 64 37 99 3.28e-13 66.2
MS.gene072844.t1 AT4G34410 62.687 67 25 0 8 74 136 202 3.34e-13 66.6
MS.gene072844.t1 AT3G25890 71.053 38 11 0 10 47 133 170 3.67e-13 67.0
MS.gene072844.t1 AT3G25890 71.053 38 11 0 10 47 133 170 3.67e-13 67.0
MS.gene072844.t1 AT4G18450 55.000 60 25 2 6 63 108 167 5.26e-13 66.2
MS.gene072844.t1 AT2G40220 68.421 57 18 0 7 63 54 110 1.00e-12 65.9
MS.gene072844.t1 AT1G33760 39.098 133 65 3 5 130 17 140 1.36e-12 63.5
MS.gene072844.t1 AT1G77640 61.017 59 23 0 6 64 41 99 1.77e-12 64.3
MS.gene072844.t1 AT5G50080 63.333 60 22 0 5 64 74 133 2.44e-12 63.5
MS.gene072844.t1 AT5G50080 63.333 60 22 0 5 64 83 142 2.52e-12 63.5
MS.gene072844.t1 AT1G53910 61.667 60 23 0 5 64 122 181 3.98e-12 63.9
MS.gene072844.t1 AT1G53910 61.667 60 23 0 5 64 122 181 3.98e-12 63.9
MS.gene072844.t1 AT1G53910 61.667 60 23 0 5 64 120 179 4.08e-12 63.9
MS.gene072844.t1 AT1G63030 51.786 56 27 0 8 63 30 85 6.38e-12 61.6
MS.gene072844.t1 AT1G63030 51.786 56 27 0 8 63 30 85 6.38e-12 61.6
MS.gene072844.t1 AT1G64380 50.602 83 37 1 1 79 129 211 3.29e-11 61.2
MS.gene072844.t1 AT1G12610 50.000 56 28 0 8 63 30 85 4.59e-11 59.7
MS.gene072844.t1 AT1G44830 61.667 60 22 1 6 64 33 92 6.84e-11 59.3

Find 38 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAGGAATTGCTTCATTA+TGG 0.265059 3.2:+87683063 MS.gene072844:CDS
TCATAGTAGTATCAATTTCT+TGG 0.285328 3.2:-87682930 None:intergenic
CAATATGGGGTGGCGAATTT+CGG 0.312981 3.2:-87682387 None:intergenic
TGAGGCTGTTGCAGAGATAT+TGG 0.340722 3.2:-87682850 None:intergenic
AAAAGAATCAGAGGGAAATT+GGG 0.351339 3.2:+87682966 MS.gene072844:CDS
GACAAAGGCATTGGGGCTCT+TGG 0.365987 3.2:+87682360 MS.gene072844:CDS
TAGAGGAATTGCTTCATTAT+GGG 0.393664 3.2:+87683064 MS.gene072844:CDS
AGGCGTCCGACAAAGGCATT+GGG 0.410359 3.2:+87682352 MS.gene072844:CDS
ACAAAGGCATTGGGGCTCTT+GGG 0.427788 3.2:+87682361 MS.gene072844:CDS
TGTGACACATTGGGGTTGTA+AGG 0.432124 3.2:-87682745 None:intergenic
GAGGCGTCCGACAAAGGCAT+TGG 0.472374 3.2:+87682351 MS.gene072844:CDS
AAGAGCCCCAATGCCTTTGT+CGG 0.476653 3.2:-87682358 None:intergenic
CAAGACTAATGTGTGGTACA+AGG 0.476857 3.2:+87682707 MS.gene072844:CDS
TTTCATGGGAACATTGTTTG+TGG 0.482813 3.2:-87682902 None:intergenic
GGGTTTCAAGAAAGTTAAAG+TGG 0.487028 3.2:+87682987 MS.gene072844:CDS
GATGATGATTGTGACACATT+GGG 0.489977 3.2:-87682754 None:intergenic
TCACATTGAACAAATGATAG+AGG 0.493691 3.2:+87683047 MS.gene072844:CDS
AATGCCTTTGTCGGACGCCT+CGG 0.517800 3.2:-87682349 None:intergenic
GGTGTCTAGACTTACAATAT+GGG 0.524604 3.2:-87682401 None:intergenic
CTTTGTGAAGATTGTTTCTG+AGG 0.530721 3.2:-87682868 None:intergenic
AAAGAATCAGAGGGAAATTG+GGG 0.542505 3.2:+87682967 MS.gene072844:CDS
TCAATGTGATCTTCTTCAAG+AGG 0.543478 3.2:-87683033 None:intergenic
GTGACACATTGGGGTTGTAA+GGG 0.555765 3.2:-87682744 None:intergenic
GTGTTTCACTTTCATGTCTG+TGG 0.565586 3.2:-87683114 None:intergenic
TTTCACTTTCATGTCTGTGG+TGG 0.585069 3.2:-87683111 None:intergenic
AGATGATGATTGTGACACAT+TGG 0.587146 3.2:-87682755 None:intergenic
GTTACCGAGGCGTCCGACAA+AGG 0.593207 3.2:+87682345 MS.gene072844:CDS
TACTACTATGAAACATGAAG+AGG 0.601855 3.2:+87682942 MS.gene072844:CDS
ACGCCTCGGTAACGTTGTTG+TGG 0.609578 3.2:-87682335 None:intergenic
TAAACTGCATAGATGCTACA+TGG 0.617860 3.2:+87682807 MS.gene072844:CDS
AAGACTAATGTGTGGTACAA+GGG 0.623635 3.2:+87682708 MS.gene072844:CDS
ATGATGATTGTGACACATTG+GGG 0.665424 3.2:-87682753 None:intergenic
TGGCTTCATTGCAAATCACA+AGG 0.668334 3.2:+87682827 MS.gene072844:CDS
GTGTCTAGACTTACAATATG+GGG 0.673317 3.2:-87682400 None:intergenic
TCTAGACTTACAATATGGGG+TGG 0.685523 3.2:-87682397 None:intergenic
GGCGTCCGACAAAGGCATTG+GGG 0.701891 3.2:+87682353 MS.gene072844:CDS
AGACCACAACAACGTTACCG+AGG 0.703547 3.2:+87682332 MS.gene072844:CDS
GAAGCAGCAAGACTAATGTG+TGG 0.733704 3.2:+87682700 MS.gene072844:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCATAGTAGTATCAATTTCT+TGG - chr3.2:87682933-87682952 None:intergenic 25.0%
!!! AAGTTTTAACAAAATCACGA+TGG - chr3.2:87682425-87682444 None:intergenic 25.0%
AAAAAGAATCAGAGGGAAAT+TGG + chr3.2:87682965-87682984 MS.gene072844:CDS 30.0%
AAAAGAATCAGAGGGAAATT+GGG + chr3.2:87682966-87682985 MS.gene072844:CDS 30.0%
ATAGAGGAATTGCTTCATTA+TGG + chr3.2:87683063-87683082 MS.gene072844:CDS 30.0%
TACTACTATGAAACATGAAG+AGG + chr3.2:87682942-87682961 MS.gene072844:CDS 30.0%
TAGAGGAATTGCTTCATTAT+GGG + chr3.2:87683064-87683083 MS.gene072844:CDS 30.0%
TCACATTGAACAAATGATAG+AGG + chr3.2:87683047-87683066 MS.gene072844:CDS 30.0%
TCATTATGTGCAGAAAAACT+AGG + chr3.2:87682626-87682645 MS.gene072844:intron 30.0%
! ACAGTTACTACTATCTTTTG+AGG - chr3.2:87682499-87682518 None:intergenic 30.0%
!!! AATTTCTTGGCTACTTTTCA+TGG - chr3.2:87682920-87682939 None:intergenic 30.0%
!!! ATTTCTTGGCTACTTTTCAT+GGG - chr3.2:87682919-87682938 None:intergenic 30.0%
AAAGAATCAGAGGGAAATTG+GGG + chr3.2:87682967-87682986 MS.gene072844:CDS 35.0%
AAGACTAATGTGTGGTACAA+GGG + chr3.2:87682708-87682727 MS.gene072844:CDS 35.0%
AGAAAAACTAGGATATGGCT+TGG + chr3.2:87682637-87682656 MS.gene072844:intron 35.0%
AGATGATGATTGTGACACAT+TGG - chr3.2:87682758-87682777 None:intergenic 35.0%
ATGATGATTGTGACACATTG+GGG - chr3.2:87682756-87682775 None:intergenic 35.0%
GAAGAGGAAAAAGAATCAGA+GGG + chr3.2:87682958-87682977 MS.gene072844:CDS 35.0%
GATGATGATTGTGACACATT+GGG - chr3.2:87682757-87682776 None:intergenic 35.0%
GGGTTTCAAGAAAGTTAAAG+TGG + chr3.2:87682987-87683006 MS.gene072844:CDS 35.0%
GGTGTCTAGACTTACAATAT+GGG - chr3.2:87682404-87682423 None:intergenic 35.0%
GTGTCTAGACTTACAATATG+GGG - chr3.2:87682403-87682422 None:intergenic 35.0%
TAAACTGCATAGATGCTACA+TGG + chr3.2:87682807-87682826 MS.gene072844:CDS 35.0%
TCAATGTGATCTTCTTCAAG+AGG - chr3.2:87683036-87683055 None:intergenic 35.0%
TGAAGAGGAAAAAGAATCAG+AGG + chr3.2:87682957-87682976 MS.gene072844:CDS 35.0%
TGGTGTCTAGACTTACAATA+TGG - chr3.2:87682405-87682424 None:intergenic 35.0%
TGTGCAGAAAAACTAGGATA+TGG + chr3.2:87682632-87682651 MS.gene072844:intron 35.0%
TTTCATGGGAACATTGTTTG+TGG - chr3.2:87682905-87682924 None:intergenic 35.0%
!! CTTTGTGAAGATTGTTTCTG+AGG - chr3.2:87682871-87682890 None:intergenic 35.0%
!!! ATCTTTTGAGGCTATGAGTT+TGG - chr3.2:87682487-87682506 None:intergenic 35.0%
CAAGACTAATGTGTGGTACA+AGG + chr3.2:87682707-87682726 MS.gene072844:CDS 40.0%
TCTAGACTTACAATATGGGG+TGG - chr3.2:87682400-87682419 None:intergenic 40.0%
TGGCTTCATTGCAAATCACA+AGG + chr3.2:87682827-87682846 MS.gene072844:CDS 40.0%
!!! TGGTACTTTTGAAACTGCAG+AGG + chr3.2:87682657-87682676 MS.gene072844:CDS 40.0%
CAATATGGGGTGGCGAATTT+CGG - chr3.2:87682390-87682409 None:intergenic 45.0%
CTATGAGTTTGGCAGGATCA+CGG - chr3.2:87682476-87682495 None:intergenic 45.0%
GAAGCAGCAAGACTAATGTG+TGG + chr3.2:87682700-87682719 MS.gene072844:CDS 45.0%
GTGACACATTGGGGTTGTAA+GGG - chr3.2:87682747-87682766 None:intergenic 45.0%
TGAGGCTGTTGCAGAGATAT+TGG - chr3.2:87682853-87682872 None:intergenic 45.0%
TGTGACACATTGGGGTTGTA+AGG - chr3.2:87682748-87682767 None:intergenic 45.0%
! TTTGAGGCTATGAGTTTGGC+AGG - chr3.2:87682483-87682502 None:intergenic 45.0%
AAGAGCCCCAATGCCTTTGT+CGG - chr3.2:87682361-87682380 None:intergenic 50.0%
AGACCACAACAACGTTACCG+AGG + chr3.2:87682332-87682351 MS.gene072844:CDS 50.0%
!! ACAAAGGCATTGGGGCTCTT+GGG + chr3.2:87682361-87682380 MS.gene072844:CDS 50.0%
AATGCCTTTGTCGGACGCCT+CGG - chr3.2:87682352-87682371 None:intergenic 55.0%
ACGCCTCGGTAACGTTGTTG+TGG - chr3.2:87682338-87682357 None:intergenic 55.0%
!! AGGCGTCCGACAAAGGCATT+GGG + chr3.2:87682352-87682371 MS.gene072844:CDS 55.0%
!! GACAAAGGCATTGGGGCTCT+TGG + chr3.2:87682360-87682379 MS.gene072844:CDS 55.0%
! GAGGCGTCCGACAAAGGCAT+TGG + chr3.2:87682351-87682370 MS.gene072844:CDS 60.0%
! GTTACCGAGGCGTCCGACAA+AGG + chr3.2:87682345-87682364 MS.gene072844:CDS 60.0%
!! GGCGTCCGACAAAGGCATTG+GGG + chr3.2:87682353-87682372 MS.gene072844:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 87682326 87683125 87682326 ID=MS.gene072844
chr3.2 mRNA 87682326 87683125 87682326 ID=MS.gene072844.t1;Parent=MS.gene072844
chr3.2 exon 87682326 87682408 87682326 ID=MS.gene072844.t1.exon1;Parent=MS.gene072844.t1
chr3.2 CDS 87682326 87682408 87682326 ID=cds.MS.gene072844.t1;Parent=MS.gene072844.t1
chr3.2 exon 87682639 87683125 87682639 ID=MS.gene072844.t1.exon2;Parent=MS.gene072844.t1
chr3.2 CDS 87682639 87683125 87682639 ID=cds.MS.gene072844.t1;Parent=MS.gene072844.t1
Gene Sequence

>MS.gene072844

ATGGCTAGACCACAACAACGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGTAAGTCTAGACACCATCGTGATTTTGTTAAAACTTAACGCATGTAAAAAAAATCATTAGTACACCGTGATCCTGCCAAACTCATAGCCTCAAAAGATAGTAGTAACTGTTTTGAGTTTTGACACATTACATATATGCACATTTCACATTTCTTTAGAAGCATATTCATTTCAAGTCATTAATTAATTATGAATGAAAAGTTATAACATTTTTTTTTTCATTATGTGCAGAAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCAGAGGATGCAGCTAGAGCATACGATGAAGCAGCAAGACTAATGTGTGGTACAAGGGCAAGAACAAATTTCCCTTACAACCCCAATGTGTCACAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCATTGCAAATCACAAGGCCAATATCTCTGCAACAGCCTCAGAAACAATCTTCACAAAGTGTAAACATATCCACAAACAATGTTCCCATGAAAAGTAGCCAAGAAATTGATACTACTATGAAACATGAAGAGGAAAAAGAATCAGAGGGAAATTGGGGTTTCAAGAAAGTTAAAGTGGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCACATTGAACAAATGATAGAGGAATTGCTTCATTATGGGTCTATTGAGCTTTGTTCTGTTTTTCCACCACAGACATGA
Protein sequence

>MS.gene072844.t1

MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQKQSSQSVNISTNNVPMKSSQEIDTTMKHEEEKESEGNWGFKKVKVENSQQFIKPLEEDHIEQMIEELLHYGSIELCSVFPPQT