AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072911

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072911.t1 MTR_3g107520 84.130 523 9 4 1 497 1 475 0.0 868
MS.gene072911.t1 MTR_3g030040 48.000 500 173 10 25 486 6 456 1.14e-140 432
MS.gene072911.t1 MTR_8g092590 47.137 524 189 12 1 486 1 474 2.74e-138 426
MS.gene072911.t1 MTR_1g098550 43.833 527 200 9 1 486 1 472 5.53e-137 422
MS.gene072911.t1 MTR_1g098550 43.833 527 200 9 1 486 5 476 8.98e-137 422
MS.gene072911.t1 MTR_8g037260 50.000 500 163 11 25 486 6 456 4.25e-135 417
MS.gene072911.t1 MTR_7g106680 47.107 484 150 9 30 486 10 414 1.41e-129 402
MS.gene072911.t1 MTR_3g007770 45.331 514 162 7 1 486 1 423 2.35e-129 401
MS.gene072911.t1 MTR_2g035780 40.864 509 166 12 5 486 7 407 9.75e-114 360
MS.gene072911.t1 MTR_4g130510 65.217 207 46 1 306 486 230 436 4.75e-87 283
MS.gene072911.t1 MTR_4g130510 56.627 166 67 3 1 164 1 163 8.77e-42 159
MS.gene072911.t1 MTR_4g130510 65.217 207 46 1 306 486 230 436 1.83e-85 281
MS.gene072911.t1 MTR_4g130510 56.024 166 68 2 1 164 1 163 8.64e-42 160
MS.gene072911.t1 MTR_4g130510 65.217 207 46 1 306 486 230 436 3.44e-84 281
MS.gene072911.t1 MTR_4g130510 56.024 166 68 2 1 164 1 163 3.77e-42 161
MS.gene072911.t1 MTR_4g130510 65.217 207 46 1 306 486 230 436 4.87e-84 281
MS.gene072911.t1 MTR_4g130510 56.024 166 68 2 1 164 1 163 3.68e-42 161
MS.gene072911.t1 MTR_2g016630 65.366 205 45 1 308 486 162 366 3.16e-83 277
MS.gene072911.t1 MTR_8g086600 65.700 207 45 1 306 486 175 381 5.66e-83 276
MS.gene072911.t1 MTR_8g086600 46.296 54 29 0 37 90 6 59 1.91e-12 70.5
MS.gene072911.t1 MTR_1g069605 60.096 208 57 1 305 486 89 296 2.78e-78 262
MS.gene072911.t1 MTR_8g063270 56.039 207 65 1 306 486 184 390 3.17e-73 250
MS.gene072911.t1 MTR_8g063270 42.727 220 100 5 1 210 1 204 2.14e-35 141
MS.gene072911.t1 MTR_3g436010 60.104 193 69 3 6 195 3 190 1.12e-64 210
MS.gene072911.t1 MTR_3g436010 60.104 193 69 3 6 195 3 190 1.50e-64 212
MS.gene072911.t1 MTR_8g063270 55.676 185 56 1 328 486 1 185 3.77e-64 222
MS.gene072911.t1 MTR_1g039445 48.148 216 75 3 301 482 235 447 8.60e-53 192
MS.gene072911.t1 MTR_7g109200 50.000 198 68 2 308 474 294 491 1.63e-52 192
MS.gene072911.t1 MTR_2g438220 46.512 215 84 2 299 482 147 361 1.83e-50 186
MS.gene072911.t1 MTR_4g077910 47.549 204 76 2 310 482 272 475 2.75e-50 185
MS.gene072911.t1 MTR_1g039480 45.540 213 85 2 301 482 249 461 9.37e-50 184
MS.gene072911.t1 MTR_5g029190 44.712 208 84 2 310 486 251 458 9.40e-49 181
MS.gene072911.t1 MTR_7g116230 46.078 204 79 2 310 482 128 331 4.92e-47 175
MS.gene072911.t1 MTR_3g091270 56.800 125 51 2 375 498 105 227 8.71e-36 139
MS.gene072911.t1 MTR_2g087900 54.128 109 46 1 351 459 72 176 1.03e-34 132
MS.gene072911.t1 MTR_2g087900 54.128 109 46 1 351 459 72 176 3.36e-34 132
MS.gene072911.t1 MTR_2g087900 52.174 115 51 1 345 459 66 176 1.19e-33 133
MS.gene072911.t1 MTR_2g087900 52.174 115 51 1 345 459 66 176 4.52e-33 132
MS.gene072911.t1 MTR_2g087900 52.174 115 51 1 345 459 66 176 8.38e-33 133
MS.gene072911.t1 MTR_2g087950 47.727 132 63 1 351 482 70 195 7.31e-31 127
MS.gene072911.t1 MTR_2g087960 47.794 136 65 2 351 486 73 202 8.55e-31 126
MS.gene072911.t1 MTR_2g087960 49.242 132 61 2 351 482 73 198 2.21e-30 125
MS.gene072911.t1 MTR_2g087980 42.945 163 79 4 326 482 37 191 4.77e-30 124
MS.gene072911.t1 MTR_3g060280 45.528 123 61 2 337 459 70 186 6.05e-28 116
MS.gene072911.t1 MTR_3g060280 45.528 123 61 2 337 459 70 186 2.13e-27 116
MS.gene072911.t1 MTR_3g060280 45.528 123 61 2 337 459 70 186 2.36e-27 115
MS.gene072911.t1 MTR_3g060220 49.541 109 50 1 351 459 73 176 2.52e-27 116
MS.gene072911.t1 MTR_3g060240 50.459 109 49 1 351 459 73 176 2.73e-27 116
MS.gene072911.t1 MTR_3g060280 45.528 123 61 2 337 459 70 186 5.59e-27 115
MS.gene072911.t1 MTR_3g060220 49.091 110 50 2 351 459 73 177 7.54e-26 112
MS.gene072911.t1 MTR_2g037830 35.032 157 71 2 327 459 19 168 4.18e-24 105
MS.gene072911.t1 MTR_3g005560 39.130 138 67 4 325 459 45 168 1.43e-23 103
MS.gene072911.t1 MTR_4g050000 49.541 109 49 1 351 459 70 172 1.53e-23 104
MS.gene072911.t1 MTR_2g037830 35.032 157 71 2 327 459 19 168 2.48e-23 104
MS.gene072911.t1 MTR_0011s0020 34.177 158 71 3 327 459 19 168 1.00e-22 102
MS.gene072911.t1 MTR_3g005560 39.130 138 67 4 325 459 45 168 1.27e-22 102
MS.gene072911.t1 MTR_3g005560 40.945 127 60 3 334 459 56 168 1.42e-22 101
MS.gene072911.t1 MTR_3g450800 38.400 125 67 2 335 459 6 120 1.72e-22 101
MS.gene072911.t1 MTR_1g073740 37.500 168 89 5 323 487 57 211 2.87e-22 100
MS.gene072911.t1 MTR_4g088225 37.410 139 76 3 321 459 54 181 1.53e-21 98.6
MS.gene072911.t1 MTR_4g088225 37.410 139 76 3 321 459 54 181 2.12e-21 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072911.t1 AT4G32410 68.226 513 83 7 1 486 1 460 0.0 649
MS.gene072911.t1 AT2G25540 59.109 516 117 7 7 496 1 448 0.0 585
MS.gene072911.t1 AT5G05170 48.682 493 169 9 25 486 5 444 2.86e-138 425
MS.gene072911.t1 AT5G09870 45.809 513 187 11 1 486 1 449 2.25e-134 415
MS.gene072911.t1 AT5G64740 46.525 518 188 10 1 486 1 461 1.33e-131 408
MS.gene072911.t1 AT4G39350 44.336 512 209 7 1 486 1 462 3.81e-129 402
MS.gene072911.t1 AT2G21770 45.472 519 198 10 1 486 1 467 1.01e-124 390
MS.gene072911.t1 AT5G17420 46.914 486 195 11 1 486 1 423 2.09e-118 372
MS.gene072911.t1 AT5G44030 40.693 462 216 8 34 486 17 429 4.93e-97 316
MS.gene072911.t1 AT5G44030 40.659 455 197 8 34 486 17 400 1.59e-96 314
MS.gene072911.t1 AT4G18780 63.902 205 48 1 308 486 165 369 1.80e-80 270
MS.gene072911.t1 AT4G18780 34.783 92 47 1 39 130 8 86 2.41e-13 73.2
MS.gene072911.t1 AT5G44030 76.860 121 28 0 366 486 1 121 1.88e-56 201
MS.gene072911.t1 AT4G38190 47.887 213 80 2 301 482 246 458 5.92e-53 193
MS.gene072911.t1 AT1G02730 47.980 198 72 2 308 474 299 496 1.31e-50 186
MS.gene072911.t1 AT2G33100 46.047 215 85 2 299 482 155 369 5.70e-49 181
MS.gene072911.t1 AT2G33100 46.047 215 85 2 299 482 155 369 5.70e-49 181
MS.gene072911.t1 AT5G16910 45.673 208 82 2 310 486 280 487 2.71e-48 179
MS.gene072911.t1 AT3G03050 45.098 204 81 2 310 482 277 480 3.70e-48 179
MS.gene072911.t1 AT1G32180 44.175 206 84 2 312 486 107 312 2.17e-44 167
MS.gene072911.t1 AT1G32180 44.175 206 84 2 312 486 107 312 2.17e-44 167
MS.gene072911.t1 AT2G32540 53.211 109 45 1 351 459 72 174 5.99e-31 127
MS.gene072911.t1 AT1G55850 40.571 175 98 2 314 488 50 218 6.38e-30 124
MS.gene072911.t1 AT2G32530 53.636 110 45 1 351 460 72 175 7.54e-30 124
MS.gene072911.t1 AT2G32620 53.153 111 44 2 351 460 72 175 2.34e-28 118
MS.gene072911.t1 AT2G32620 51.818 110 47 1 351 460 72 175 4.78e-28 118
MS.gene072911.t1 AT4G15320 45.865 133 63 2 351 483 72 195 6.31e-28 118
MS.gene072911.t1 AT4G15320 45.865 133 63 2 351 483 72 195 6.32e-28 118
MS.gene072911.t1 AT4G15320 44.604 139 68 2 351 489 72 201 8.04e-28 118
MS.gene072911.t1 AT2G32620 51.818 110 47 1 351 460 72 175 8.80e-28 117
MS.gene072911.t1 AT4G15320 44.604 139 68 2 351 489 72 201 1.43e-27 117
MS.gene072911.t1 AT4G15320 44.604 139 68 2 351 489 72 201 1.49e-27 117
MS.gene072911.t1 AT2G32610 49.558 113 51 1 351 463 72 178 3.54e-27 116
MS.gene072911.t1 AT4G23990 44.186 129 63 2 335 463 84 203 3.55e-26 113
MS.gene072911.t1 AT4G15290 42.446 139 71 2 351 489 72 201 4.27e-25 109
MS.gene072911.t1 AT4G24010 44.000 125 61 2 335 459 65 180 1.08e-24 108
MS.gene072911.t1 AT2G32620 58.228 79 33 0 382 460 1 79 2.08e-24 107
MS.gene072911.t1 AT4G24000 44.954 109 54 1 351 459 75 177 1.08e-23 105

Find 129 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAGATTGATTACTTAA+AGG 0.160961 3.4:-93413399 MS.gene072911:CDS
CGGTTAATGGGAGACCATTT+TGG 0.207288 3.4:+93413827 None:intergenic
GCCTCTTCCGGCATGGTTGC+TGG 0.232202 3.4:-93416258 MS.gene072911:CDS
AATTTCATTTCAAGTTAAAA+TGG 0.242295 3.4:-93414087 MS.gene072911:intron
TATGAGTTTAAGTCCTTTGA+TGG 0.251110 3.4:+93414874 None:intergenic
CAGATAAGTCTCACGGTTAA+TGG 0.255036 3.4:+93413814 None:intergenic
TTCAAATTCTTCAATGGTTT+CGG 0.261810 3.4:+93415977 None:intergenic
CCGAACTACTTCTGGTCCTT+TGG 0.273359 3.4:-93415051 MS.gene072911:CDS
GTGTTCCGGCTGATAGTTCT+TGG 0.298741 3.4:-93413962 MS.gene072911:CDS
CATTAACCGTGAGACTTATC+TGG 0.303947 3.4:-93413813 MS.gene072911:CDS
CAATCTGTCCGAACTACTTC+TGG 0.316657 3.4:-93415059 MS.gene072911:CDS
GTTCGGACAGATTGATTATC+AGG 0.323657 3.4:+93415068 None:intergenic
CACAATATGGAAGCCTCTTC+CGG 0.324269 3.4:-93416270 None:intergenic
GGACTTAAACTCATATGGTT+TGG 0.327231 3.4:-93414866 MS.gene072911:CDS
ATCGTGTTGTCATCGTGTTC+CGG 0.328735 3.4:-93413976 MS.gene072911:CDS
AATAAATATTGAACTGGAAA+TGG 0.330266 3.4:+93413309 None:intergenic
GACTTAAACTCATATGGTTT+GGG 0.349610 3.4:-93414865 MS.gene072911:CDS
TAGTGAAGATGTTAATGTTA+TGG 0.358808 3.4:-93414311 MS.gene072911:CDS
TGGTTGCCTTGGATCAATAT+AGG 0.363514 3.4:+93415001 None:intergenic
TCATAACAATCTCGACAAAC+AGG 0.367078 3.4:+93415869 None:intergenic
TCAAAGGACTTAAACTCATA+TGG 0.375839 3.4:-93414871 MS.gene072911:CDS
TCTTGCTATGTATCTGATGA+TGG 0.377670 3.4:-93413536 MS.gene072911:CDS
CGAACTACTTCTGGTCCTTT+GGG 0.379490 3.4:-93415050 MS.gene072911:CDS
ACACGATGACAACACGATAA+GGG 0.380330 3.4:+93413981 None:intergenic
AAAATCCCTAACTTGCCAAT+TGG 0.383607 3.4:+93414276 None:intergenic
TTCTGAAGAAAATAAAATTC+AGG 0.388075 3.4:+93413416 None:intergenic
AAATCCCTAACTTGCCAATT+GGG 0.401402 3.4:+93414277 None:intergenic
ACAGTGTTTGCAGTTACAAT+AGG 0.406210 3.4:+93413599 None:intergenic
TGTCCATTCAAATTCTTCAA+TGG 0.418001 3.4:+93415971 None:intergenic
ATTGAAGGGACTGGTTCTAA+TGG 0.418168 3.4:-93414736 MS.gene072911:CDS
AACAAGCTCGTTACGATTGT+GGG 0.423362 3.4:+93416233 None:intergenic
AGATAAGTCTCACGGTTAAT+GGG 0.429796 3.4:+93413815 None:intergenic
GTCACGATTCTGCCGACAGC+GGG 0.430935 3.4:-93416203 MS.gene072911:CDS
GGTTGCCTTGGATCAATATA+GGG 0.431455 3.4:+93415002 None:intergenic
TCTAGAAATAAATATTGAAC+TGG 0.441002 3.4:+93413303 None:intergenic
AACACGATGACAACACGATA+AGG 0.448331 3.4:+93413980 None:intergenic
AAATAAAATTCAGGTGCTCT+TGG 0.450426 3.4:+93413425 None:intergenic
TGGAGGTTGATTATCCCAAT+TGG 0.451047 3.4:-93414291 MS.gene072911:CDS
ATCTGGAGAGGCTTGCCATA+AGG 0.458191 3.4:-93413796 MS.gene072911:intron
AAACCATTGAAGAATTTGAA+TGG 0.458648 3.4:-93415974 MS.gene072911:CDS
GCCAGCAACCATGCCGGAAG+AGG 0.463003 3.4:+93416257 None:intergenic
GGTCAGCTGAGATGAAGAAA+TGG 0.467573 3.4:+93414003 None:intergenic
ATGGGTACAATCCGACTCAT+AGG 0.468042 3.4:+93414022 None:intergenic
AGCACTATACCTGGTTGCCT+TGG 0.471870 3.4:+93414990 None:intergenic
GGAAGGAAAGGGTTGAAGGT+TGG 0.478024 3.4:-93414831 MS.gene072911:CDS
AAACTCGGCTGTTTCAGATA+AGG 0.490058 3.4:+93413490 None:intergenic
CAACTTTCTCCATCATCTAC+AGG 0.494277 3.4:+93414346 None:intergenic
GACTGGAAGGAAAGGGTTGA+AGG 0.495484 3.4:-93414835 MS.gene072911:CDS
GAACAAGCTCGTTACGATTG+TGG 0.496218 3.4:+93416232 None:intergenic
CCAAAGGACCAGAAGTAGTT+CGG 0.499714 3.4:+93415051 None:intergenic
AAGGATTACAGTTTGGCCAT+TGG 0.503990 3.4:+93415511 None:intergenic
CACCCACATCTTTGCAAACT+CGG 0.507465 3.4:+93413475 None:intergenic
TCATCATCTCCATCGACTCT+AGG 0.507830 3.4:+93415686 None:intergenic
TCGTCGCTCCTTAACAAAAG+AGG 0.508659 3.4:+93413364 None:intergenic
TATGAATATGAGCGAAAAGA+AGG 0.509434 3.4:-93415851 MS.gene072911:CDS
AATTAGTATTGACAGATGTC+TGG 0.510676 3.4:-93415104 MS.gene072911:intron
TGATGGAGAAAGTTGGATGG+AGG 0.512419 3.4:-93414338 MS.gene072911:CDS
AATGCAAAACTAGATACAAA+AGG 0.514508 3.4:-93415811 MS.gene072911:CDS
TTTGTTGCTTGTAATGAATG+TGG 0.517856 3.4:-93415896 MS.gene072911:CDS
TAGCAAGAAACCTTGTCGAC+AGG 0.521061 3.4:+93413551 None:intergenic
AGTGAGTGAGCTTTCTCAGA+TGG 0.527989 3.4:+93415026 None:intergenic
TACAGTTCCGGTGAGAATTG+TGG 0.530491 3.4:-93414899 MS.gene072911:intron
TAAGGAGCGACGAGCAATGA+AGG 0.537145 3.4:-93413354 MS.gene072911:CDS
CATATATGTGGTGAGGATGT+TGG 0.538983 3.4:-93415941 MS.gene072911:CDS
AGCGGAGGAGGAGATATTGA+AGG 0.541051 3.4:-93414751 MS.gene072911:CDS
GTGAGTGAGCTTTCTCAGAT+GGG 0.542714 3.4:+93415027 None:intergenic
GCTGATGGGAAAAGCGGAGG+AGG 0.543579 3.4:-93414763 MS.gene072911:CDS
TGGCCATTGGTGAGAAGAGG+AGG 0.543739 3.4:+93415524 None:intergenic
ATGGTTTGGGAAATGTTGAC+TGG 0.549411 3.4:-93414852 MS.gene072911:CDS
GTCAGCTGAGATGAAGAAAT+GGG 0.549519 3.4:+93414004 None:intergenic
GGAGGAGATATTGAAGGGAC+TGG 0.553921 3.4:-93414745 MS.gene072911:CDS
GTACTGACAAATACGTCGAC+AGG 0.555484 3.4:+93413644 None:intergenic
ACAATAGGTGGCTCTTTGAG+AGG 0.557014 3.4:+93413614 None:intergenic
CAGCCGAGTTTGCAAAGATG+TGG 0.557850 3.4:-93413478 MS.gene072911:CDS
CACTTCCCTATATTGATCCA+AGG 0.563873 3.4:-93415007 MS.gene072911:CDS
CGTCGCTCCTTAACAAAAGA+GGG 0.564871 3.4:+93413365 None:intergenic
TCAGGGAGTCCTAGAGTCGA+TGG 0.565975 3.4:-93415695 MS.gene072911:intron
CACGATGACAACACGATAAG+GGG 0.571798 3.4:+93413982 None:intergenic
AGCAAGAAACCTTGTCGACA+GGG 0.574017 3.4:+93413552 None:intergenic
CAACCTCCTCTTCTCACCAA+TGG 0.578750 3.4:-93415527 MS.gene072911:CDS
CAATAGGTGGCTCTTTGAGA+GGG 0.582620 3.4:+93413615 None:intergenic
GAGAATTGTGGATCCATCAA+AGG 0.584083 3.4:-93414887 MS.gene072911:CDS
GTTTGGCCATTGGTGAGAAG+AGG 0.584350 3.4:+93415521 None:intergenic
GTGTTTGCAGTTACAATAGG+TGG 0.584815 3.4:+93413602 None:intergenic
GAAATGTTGACTGGAAGGAA+AGG 0.585668 3.4:-93414843 MS.gene072911:CDS
TGAAGATGTTAATGTTATGG+AGG 0.585968 3.4:-93414308 MS.gene072911:CDS
TATATTGATCCAAGGCAACC+AGG 0.590258 3.4:-93414999 MS.gene072911:intron
TGATGGAGAACCATCACAGT+TGG 0.592603 3.4:-93413669 MS.gene072911:CDS
CATAACAATCTCGACAAACA+GGG 0.595414 3.4:+93415870 None:intergenic
AAATGTTGACTGGAAGGAAA+GGG 0.595770 3.4:-93414842 MS.gene072911:CDS
CTGTAGATGATGGAGAAAGT+TGG 0.595930 3.4:-93414345 MS.gene072911:CDS
TCTGCTGTACCTGTAGATGA+TGG 0.597039 3.4:-93414355 MS.gene072911:CDS
AGATGATGGAGAAAGTTGGA+TGG 0.597442 3.4:-93414341 MS.gene072911:CDS
GCCTCTCCAGATAAGTCTCA+CGG 0.598956 3.4:+93413807 None:intergenic
GATTGATTACTTAAAGGACA+AGG 0.599814 3.4:-93413393 MS.gene072911:CDS
TGTTGACTACCCTGTCGACA+AGG 0.603351 3.4:-93413561 MS.gene072911:CDS
TATGGAAGCCTCTTCCGGCA+TGG 0.605750 3.4:-93416265 MS.gene072911:CDS
GTGGGAGCCAGCAACCATGC+CGG 0.607689 3.4:+93416251 None:intergenic
TAATAAGTCAAGGAGACAGT+GGG 0.609464 3.4:-93415594 MS.gene072911:CDS
ACAGATTGATTATCAGGTGT+AGG 0.612850 3.4:+93415074 None:intergenic
GATGGATCCACAATTCTCAC+CGG 0.614223 3.4:+93414892 None:intergenic
AGCCGAGTTTGCAAAGATGT+GGG 0.615569 3.4:-93413477 MS.gene072911:CDS
AGCAACAAACACATCACCGG+TGG 0.617704 3.4:+93415910 None:intergenic
AGAAACCAAGAACTATCAGC+CGG 0.622521 3.4:+93413957 None:intergenic
ACCGTGAGACTTATCTGGAG+AGG 0.622664 3.4:-93413808 MS.gene072911:CDS
TCGACAGGAGCCAACTGTGA+TGG 0.623093 3.4:+93413659 None:intergenic
GCGGAGGAGGAGATATTGAA+GGG 0.624669 3.4:-93414750 MS.gene072911:CDS
TAAGAAACTAACCCCGCTGT+CGG 0.625109 3.4:+93416191 None:intergenic
GCTTTCTCAGATGGGCCCAA+AGG 0.632920 3.4:+93415035 None:intergenic
AGATATGCTGATGGGAAAAG+CGG 0.635238 3.4:-93414769 MS.gene072911:CDS
ACAAGCAACAAACACATCAC+CGG 0.638010 3.4:+93415907 None:intergenic
GGACAAGTCTGTCATATATG+TGG 0.638984 3.4:-93415953 MS.gene072911:CDS
ATGCTCGACAACCTATGAGT+CGG 0.642320 3.4:-93414033 MS.gene072911:CDS
ATGACTGGTAGATATGCTGA+TGG 0.642913 3.4:-93414778 MS.gene072911:CDS
TTGTGTAGATATGATCGTGA+TGG 0.643761 3.4:-93413686 MS.gene072911:intron
GATGTTGGAACAACACCCAC+CGG 0.644734 3.4:-93415926 MS.gene072911:CDS
TTTGGGAAATGTTGACTGGA+AGG 0.645984 3.4:-93414848 MS.gene072911:CDS
GCAATATCGTGTAACTCACC+CGG 0.646970 3.4:-93413930 MS.gene072911:intron
ACTAGATACAAAAGGCTCAG+AGG 0.647746 3.4:-93415803 MS.gene072911:intron
AACGAGTTCAATTATCGACA+AGG 0.650849 3.4:-93415638 MS.gene072911:CDS
CGTCACGATTCTGCCGACAG+CGG 0.656503 3.4:-93416204 MS.gene072911:CDS
ATAATAAGTCAAGGAGACAG+TGG 0.658283 3.4:-93415595 MS.gene072911:CDS
TATGCTGATGGGAAAAGCGG+AGG 0.658844 3.4:-93414766 MS.gene072911:CDS
ATCATCTACAGGTACAGCAG+AGG 0.665118 3.4:+93414357 None:intergenic
CGACGTATTTGTCAGTACAG+TGG 0.685009 3.4:-93413639 MS.gene072911:CDS
GCAACAAACACATCACCGGT+GGG 0.693813 3.4:+93415911 None:intergenic
TGACTGGTAGATATGCTGAT+GGG 0.702596 3.4:-93414777 MS.gene072911:CDS
AGTCTGTCATATATGTGGTG+AGG 0.712202 3.4:-93415948 MS.gene072911:CDS
TCACGATTCTGCCGACAGCG+GGG 0.734794 3.4:-93416202 MS.gene072911:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAAGTCA+AGG - chr3.4:93413964-93413983 MS.gene072911:CDS 10.0%
!!! AACTTATTACTTTTTTTTTT+GGG - chr3.4:93414210-93414229 MS.gene072911:intron 10.0%
!! GTTTACTTTAAATATTTACT+TGG - chr3.4:93415454-93415473 MS.gene072911:intron 15.0%
!! TTCTAAATATGTTTACATTT+GGG - chr3.4:93414105-93414124 MS.gene072911:intron 15.0%
!! TTTCTAAATATGTTTACATT+TGG - chr3.4:93414104-93414123 MS.gene072911:intron 15.0%
!!! AATTTCATTTCAAGTTAAAA+TGG - chr3.4:93415481-93415500 MS.gene072911:intron 15.0%
!!! GAACTTATTACTTTTTTTTT+TGG - chr3.4:93414209-93414228 MS.gene072911:intron 15.0%
!! AATAAATATTGAACTGGAAA+TGG + chr3.4:93416262-93416281 None:intergenic 20.0%
!! TATATTTGATATTACAGTTC+CGG - chr3.4:93414657-93414676 MS.gene072911:intron 20.0%
!! TTAATGCTATAATTCTAATC+TGG - chr3.4:93413512-93413531 MS.gene072911:CDS 20.0%
!!! AGGCTCAATTTATTTTTATA+TGG - chr3.4:93414962-93414981 MS.gene072911:intron 20.0%
!!! TTCTCATTATGACTTATTTT+GGG - chr3.4:93415405-93415424 MS.gene072911:intron 20.0%
!!! TTCTGAAGAAAATAAAATTC+AGG + chr3.4:93416155-93416174 None:intergenic 20.0%
!!! TTGATTTTAAATGATGAATC+TGG - chr3.4:93413849-93413868 MS.gene072911:intron 20.0%
!!! TTTCTCATTATGACTTATTT+TGG - chr3.4:93415404-93415423 MS.gene072911:intron 20.0%
! AAACCATTGAAGAATTTGAA+TGG - chr3.4:93413594-93413613 MS.gene072911:CDS 25.0%
! AATAAGATCAGATTGAGAAT+GGG - chr3.4:93415104-93415123 MS.gene072911:intron 25.0%
! AATGCAAAACTAGATACAAA+AGG - chr3.4:93413757-93413776 MS.gene072911:intron 25.0%
! TAACAGTTGAATAGAATCAA+AGG + chr3.4:93414079-93414098 None:intergenic 25.0%
! TAATAAGATCAGATTGAGAA+TGG - chr3.4:93415103-93415122 MS.gene072911:intron 25.0%
! TAGTGAAGATGTTAATGTTA+TGG - chr3.4:93415257-93415276 MS.gene072911:intron 25.0%
! TCAGAAGATTGATTACTTAA+AGG - chr3.4:93416169-93416188 MS.gene072911:intron 25.0%
! TGAGAAACATACATAACATT+AGG + chr3.4:93415391-93415410 None:intergenic 25.0%
! TGATTCTATTCAACTGTTAT+AGG - chr3.4:93414080-93414099 MS.gene072911:intron 25.0%
! TTCAAATTCTTCAATGGTTT+CGG + chr3.4:93413594-93413613 None:intergenic 25.0%
!!! AATACTGTGTTTTTTGCAAA+AGG + chr3.4:93416120-93416139 None:intergenic 25.0%
!!! ATACTGTGTTTTTTGCAAAA+GGG + chr3.4:93416119-93416138 None:intergenic 25.0%
!!! ATGTATTTCATGTTTTTTGC+AGG - chr3.4:93414379-93414398 MS.gene072911:intron 25.0%
!!! TGATCTTCAACTTTTTTATC+AGG - chr3.4:93413479-93413498 MS.gene072911:CDS 25.0%
!!! TTCATCTTAACACTTTTTGA+CGG + chr3.4:93414192-93414211 None:intergenic 25.0%
!!! TTTTTTTTTTGGTGGACTTT+TGG - chr3.4:93415339-93415358 MS.gene072911:intron 25.0%
AAAAATATGGTACAGATGAC+TGG - chr3.4:93414775-93414794 MS.gene072911:CDS 30.0%
AAATAAAATTCAGGTGCTCT+TGG + chr3.4:93416146-93416165 None:intergenic 30.0%
AATGGGATTGTTTAACCAAA+AGG - chr3.4:93415121-93415140 MS.gene072911:intron 30.0%
ACAAGACAAACTAAGATTAG+TGG + chr3.4:93415866-93415885 None:intergenic 30.0%
ACACTGCATTATATATGCAA+GGG + chr3.4:93414307-93414326 None:intergenic 30.0%
AGAATCAAAGGATTACAGTT+TGG + chr3.4:93414067-93414086 None:intergenic 30.0%
ATCAAACCAAACAGAATAAG+TGG + chr3.4:93414878-93414897 None:intergenic 30.0%
ATGGGATTGTTTAACCAAAA+GGG - chr3.4:93415122-93415141 MS.gene072911:intron 30.0%
CTGTCAAAAACAGAAACAAA+GGG + chr3.4:93415507-93415526 None:intergenic 30.0%
GACTTAAACTCATATGGTTT+GGG - chr3.4:93414703-93414722 MS.gene072911:intron 30.0%
GATCAATACACTCTATTGTT+TGG + chr3.4:93415041-93415060 None:intergenic 30.0%
GATCATCTATTTGCATATTG+AGG - chr3.4:93415174-93415193 MS.gene072911:intron 30.0%
GATTGATTACTTAAAGGACA+AGG - chr3.4:93416175-93416194 MS.gene072911:intron 30.0%
TAAATGATGAATCTGGATCA+GGG - chr3.4:93413856-93413875 MS.gene072911:intron 30.0%
TATGAATATGAGCGAAAAGA+AGG - chr3.4:93413717-93413736 MS.gene072911:intron 30.0%
TATGAGTTTAAGTCCTTTGA+TGG + chr3.4:93414697-93414716 None:intergenic 30.0%
TCAAAGGACTTAAACTCATA+TGG - chr3.4:93414697-93414716 MS.gene072911:intron 30.0%
TCATTGTTTGTTTATGCTAG+AGG - chr3.4:93414942-93414961 MS.gene072911:intron 30.0%
TGAAGATGTTAATGTTATGG+AGG - chr3.4:93415260-93415279 MS.gene072911:intron 30.0%
TGTCCATTCAAATTCTTCAA+TGG + chr3.4:93413600-93413619 None:intergenic 30.0%
TTAAATGATGAATCTGGATC+AGG - chr3.4:93413855-93413874 MS.gene072911:intron 30.0%
TTACAACTTTAGATCAGATC+TGG - chr3.4:93413433-93413452 MS.gene072911:CDS 30.0%
! AATTTTCATTCTCCTTCTCA+TGG - chr3.4:93414999-93415018 MS.gene072911:intron 30.0%
! TTTGTTGCTTGTAATGAATG+TGG - chr3.4:93413672-93413691 MS.gene072911:CDS 30.0%
! TTTTGGATCAGTTTCCAAAA+TGG - chr3.4:93415727-93415746 MS.gene072911:intron 30.0%
!! AATTAGTATTGACAGATGTC+TGG - chr3.4:93414464-93414483 MS.gene072911:intron 30.0%
!!! AACCAAAAGGGACATTTTTT+GGG - chr3.4:93415134-93415153 MS.gene072911:intron 30.0%
!!! CTTTGTTTCTGTTTTTGACA+GGG - chr3.4:93415506-93415525 MS.gene072911:intron 30.0%
!!! TAACCAAAAGGGACATTTTT+TGG - chr3.4:93415133-93415152 MS.gene072911:intron 30.0%
!!! TTGTATCTAGTTTTGCATTG+AGG + chr3.4:93413756-93413775 None:intergenic 30.0%
AACGAGTTCAATTATCGACA+AGG - chr3.4:93413930-93413949 MS.gene072911:intron 35.0%
AACTTTAGATCAGATCTGGT+TGG - chr3.4:93413437-93413456 MS.gene072911:CDS 35.0%
ACAGATTGATTATCAGGTGT+AGG + chr3.4:93414497-93414516 None:intergenic 35.0%
ACAGTGTTTGCAGTTACAAT+AGG + chr3.4:93415972-93415991 None:intergenic 35.0%
ACATAGCAATCCAAACCTTA+TGG + chr3.4:93415790-93415809 None:intergenic 35.0%
ACTAGCTAATCATATGTGTG+AGG - chr3.4:93414906-93414925 MS.gene072911:intron 35.0%
AGATAAGTCTCACGGTTAAT+GGG + chr3.4:93415756-93415775 None:intergenic 35.0%
AGCTAGAAATTCACCTCTTA+AGG - chr3.4:93414247-93414266 MS.gene072911:intron 35.0%
ATAATAAGTCAAGGAGACAG+TGG - chr3.4:93413973-93413992 MS.gene072911:CDS 35.0%
ATTATCCCAATTGGCAAGTT+AGG - chr3.4:93415286-93415305 MS.gene072911:intron 35.0%
CATAACAATCTCGACAAACA+GGG + chr3.4:93413701-93413720 None:intergenic 35.0%
CATCTATTTGCATATTGAGG+TGG - chr3.4:93415177-93415196 MS.gene072911:intron 35.0%
CATTATATATGCAAGGGTTG+GGG + chr3.4:93414301-93414320 None:intergenic 35.0%
CCTGTCAAAAACAGAAACAA+AGG + chr3.4:93415508-93415527 None:intergenic 35.0%
CTTCAGTTATCTGTGAGATT+TGG - chr3.4:93415688-93415707 MS.gene072911:CDS 35.0%
GACACTGCATTATATATGCA+AGG + chr3.4:93414308-93414327 None:intergenic 35.0%
GCATTATATATGCAAGGGTT+GGG + chr3.4:93414302-93414321 None:intergenic 35.0%
GGACTTAAACTCATATGGTT+TGG - chr3.4:93414702-93414721 MS.gene072911:intron 35.0%
TAATAAGTCAAGGAGACAGT+GGG - chr3.4:93413974-93413993 MS.gene072911:CDS 35.0%
TCATAACAATCTCGACAAAC+AGG + chr3.4:93413702-93413721 None:intergenic 35.0%
TGCATTATATATGCAAGGGT+TGG + chr3.4:93414303-93414322 None:intergenic 35.0%
TGTAAGCCACTTATTCTGTT+TGG - chr3.4:93414869-93414888 MS.gene072911:CDS 35.0%
TTATCCCAATTGGCAAGTTA+GGG - chr3.4:93415287-93415306 MS.gene072911:intron 35.0%
TTGTGTAGATATGATCGTGA+TGG - chr3.4:93415882-93415901 MS.gene072911:CDS 35.0%
! AAAATCCCTAACTTGCCAAT+TGG + chr3.4:93415295-93415314 None:intergenic 35.0%
! AAATCCCTAACTTGCCAATT+GGG + chr3.4:93415294-93415313 None:intergenic 35.0%
! AAATGTTGACTGGAAGGAAA+GGG - chr3.4:93414726-93414745 MS.gene072911:CDS 35.0%
! AATCATATGTGTGAGGTATC+AGG - chr3.4:93414913-93414932 MS.gene072911:intron 35.0%
! ATCATATGTGTGAGGTATCA+GGG - chr3.4:93414914-93414933 MS.gene072911:intron 35.0%
! ATTCAAGTTAGCACTATACC+TGG + chr3.4:93414590-93414609 None:intergenic 35.0%
! GTTTGCATTTTCCTGGATTT+TGG - chr3.4:93415710-93415729 MS.gene072911:intron 35.0%
! TCTTGCTATGTATCTGATGA+TGG - chr3.4:93416032-93416051 MS.gene072911:intron 35.0%
! TTTATCTAGAGTGTAGGCTT+GGG - chr3.4:93415312-93415331 MS.gene072911:intron 35.0%
!! AGGGATTTTATCTAGAGTGT+AGG - chr3.4:93415306-93415325 MS.gene072911:intron 35.0%
!! TTTTATCTAGAGTGTAGGCT+TGG - chr3.4:93415311-93415330 MS.gene072911:intron 35.0%
!!! AGATTTGGTTTGCATTTTCC+TGG - chr3.4:93415703-93415722 MS.gene072911:intron 35.0%
!!! CCTTTGTTTCTGTTTTTGAC+AGG - chr3.4:93415505-93415524 MS.gene072911:intron 35.0%
!!! GCTTGGGGGTTTTTTTTTTT+TGG - chr3.4:93415328-93415347 MS.gene072911:intron 35.0%
!!! TGGGGGTTTTTTTTTTTTGG+TGG - chr3.4:93415331-93415350 MS.gene072911:intron 35.0%
AACAAGCTCGTTACGATTGT+GGG + chr3.4:93413338-93413357 None:intergenic 40.0%
AACACGATGACAACACGATA+AGG + chr3.4:93415591-93415610 None:intergenic 40.0%
AAGGATTACAGTTTGGCCAT+TGG + chr3.4:93414060-93414079 None:intergenic 40.0%
ACAAGCAACAAACACATCAC+CGG + chr3.4:93413664-93413683 None:intergenic 40.0%
ACACGATGACAACACGATAA+GGG + chr3.4:93415590-93415609 None:intergenic 40.0%
ACCTCTTAAGGTGAATAAGC+AGG - chr3.4:93414259-93414278 MS.gene072911:intron 40.0%
ACTAGATACAAAAGGCTCAG+AGG - chr3.4:93413765-93413784 MS.gene072911:intron 40.0%
AGAAACCAAGAACTATCAGC+CGG + chr3.4:93415614-93415633 None:intergenic 40.0%
AGATATGCTGATGGGAAAAG+CGG - chr3.4:93414799-93414818 MS.gene072911:CDS 40.0%
AGTCTGTCATATATGTGGTG+AGG - chr3.4:93413620-93413639 MS.gene072911:CDS 40.0%
ATAACTGAAGTCAACCACAG+TGG + chr3.4:93415678-93415697 None:intergenic 40.0%
ATGACTGGTAGATATGCTGA+TGG - chr3.4:93414790-93414809 MS.gene072911:CDS 40.0%
ATGTGATCCAACTCTTGAAG+AGG + chr3.4:93415070-93415089 None:intergenic 40.0%
CAACTTTCTCCATCATCTAC+AGG + chr3.4:93415225-93415244 None:intergenic 40.0%
CACTTCCCTATATTGATCCA+AGG - chr3.4:93414561-93414580 MS.gene072911:intron 40.0%
CAGATAAGTCTCACGGTTAA+TGG + chr3.4:93415757-93415776 None:intergenic 40.0%
CATATATGTGGTGAGGATGT+TGG - chr3.4:93413627-93413646 MS.gene072911:CDS 40.0%
CATTAACCGTGAGACTTATC+TGG - chr3.4:93415755-93415774 MS.gene072911:intron 40.0%
CCTCTTAAGGTGAATAAGCA+GGG - chr3.4:93414260-93414279 MS.gene072911:intron 40.0%
CTTGTTACCTCTTCAAGAGT+TGG - chr3.4:93415060-93415079 MS.gene072911:CDS 40.0%
GAACAGAAAATGTCGCATCA+TGG + chr3.4:93415844-93415863 None:intergenic 40.0%
GAGAATTGTGGATCCATCAA+AGG - chr3.4:93414681-93414700 MS.gene072911:intron 40.0%
GCTGAAGCACGAGAAAAATA+TGG - chr3.4:93414762-93414781 MS.gene072911:CDS 40.0%
GGACAAGTCTGTCATATATG+TGG - chr3.4:93413615-93413634 MS.gene072911:CDS 40.0%
GGTTGCCTTGGATCAATATA+GGG + chr3.4:93414569-93414588 None:intergenic 40.0%
GTCAGCTGAGATGAAGAAAT+GGG + chr3.4:93415567-93415586 None:intergenic 40.0%
GTGTTTGCAGTTACAATAGG+TGG + chr3.4:93415969-93415988 None:intergenic 40.0%
GTTCGGACAGATTGATTATC+AGG + chr3.4:93414503-93414522 None:intergenic 40.0%
TAAAAGATGCTTACCCACTG+TGG - chr3.4:93415661-93415680 MS.gene072911:CDS 40.0%
TAACTGAAGTCAACCACAGT+GGG + chr3.4:93415677-93415696 None:intergenic 40.0%
TATATTGATCCAAGGCAACC+AGG - chr3.4:93414569-93414588 MS.gene072911:intron 40.0%
TGACTGGTAGATATGCTGAT+GGG - chr3.4:93414791-93414810 MS.gene072911:CDS 40.0%
TGAGCTTAGCTCAATTGGTA+GGG + chr3.4:93414330-93414349 None:intergenic 40.0%
TGCATATTGAGGTGGTAGTA+GGG - chr3.4:93415185-93415204 MS.gene072911:intron 40.0%
TGCTATGTTTCCTTCACTGT+TGG - chr3.4:93415802-93415821 MS.gene072911:intron 40.0%
TGGAAACTGATCCAAAATCC+AGG + chr3.4:93415724-93415743 None:intergenic 40.0%
TGGTTGCCTTGGATCAATAT+AGG + chr3.4:93414570-93414589 None:intergenic 40.0%
TTGCATATTGAGGTGGTAGT+AGG - chr3.4:93415184-93415203 MS.gene072911:intron 40.0%
! AAACTCGGCTGTTTCAGATA+AGG + chr3.4:93416081-93416100 None:intergenic 40.0%
! AGTGGGTAAGCATCTTTTAC+CGG + chr3.4:93415660-93415679 None:intergenic 40.0%
! ATGGTTTGGGAAATGTTGAC+TGG - chr3.4:93414716-93414735 MS.gene072911:intron 40.0%
! GAAATGTTGACTGGAAGGAA+AGG - chr3.4:93414725-93414744 MS.gene072911:CDS 40.0%
! GACCCAAAAAATGTCCCTTT+TGG + chr3.4:93415139-93415158 None:intergenic 40.0%
! GGTTCAACCCTCTTTTGTTA+AGG - chr3.4:93416196-93416215 MS.gene072911:intron 40.0%
! TGGAGGTTGATTATCCCAAT+TGG - chr3.4:93415277-93415296 MS.gene072911:intron 40.0%
! TTATCTAGAGTGTAGGCTTG+GGG - chr3.4:93415313-93415332 MS.gene072911:intron 40.0%
! TTTGGGAAATGTTGACTGGA+AGG - chr3.4:93414720-93414739 MS.gene072911:intron 40.0%
!! AGATGATGGAGAAAGTTGGA+TGG - chr3.4:93415227-93415246 MS.gene072911:intron 40.0%
!! ATTGAAGGGACTGGTTCTAA+TGG - chr3.4:93414832-93414851 MS.gene072911:CDS 40.0%
!! CTGTAGATGATGGAGAAAGT+TGG - chr3.4:93415223-93415242 MS.gene072911:intron 40.0%
!! GAGGTGAATTTCTAGCTACT+AGG + chr3.4:93414244-93414263 None:intergenic 40.0%
ACAATAGGTGGCTCTTTGAG+AGG + chr3.4:93415957-93415976 None:intergenic 45.0%
ACCAATTGAGCTAAGCTCAC+AGG - chr3.4:93414331-93414350 MS.gene072911:CDS 45.0%
AGCAAGAAACCTTGTCGACA+GGG + chr3.4:93416019-93416038 None:intergenic 45.0%
AGCCGAGTTTGCAAAGATGT+GGG - chr3.4:93416091-93416110 MS.gene072911:intron 45.0%
AGTGAGTGAGCTTTCTCAGA+TGG + chr3.4:93414545-93414564 None:intergenic 45.0%
ATCATCTACAGGTACAGCAG+AGG + chr3.4:93415214-93415233 None:intergenic 45.0%
ATCGTGTTGTCATCGTGTTC+CGG - chr3.4:93415592-93415611 MS.gene072911:CDS 45.0%
ATGCTCGACAACCTATGAGT+CGG - chr3.4:93415535-93415554 MS.gene072911:CDS 45.0%
ATGGGTACAATCCGACTCAT+AGG + chr3.4:93415549-93415568 None:intergenic 45.0%
CAATCTGTCCGAACTACTTC+TGG - chr3.4:93414509-93414528 MS.gene072911:intron 45.0%
CACCCACATCTTTGCAAACT+CGG + chr3.4:93416096-93416115 None:intergenic 45.0%
CACGATGACAACACGATAAG+GGG + chr3.4:93415589-93415608 None:intergenic 45.0%
CAGTCTTGACAACCATGAGA+AGG + chr3.4:93415014-93415033 None:intergenic 45.0%
CCAAAGGACCAGAAGTAGTT+CGG + chr3.4:93414520-93414539 None:intergenic 45.0%
CCAATTGAGCTAAGCTCACA+GGG - chr3.4:93414332-93414351 MS.gene072911:CDS 45.0%
CCCTGCTTATTCACCTTAAG+AGG + chr3.4:93414263-93414282 None:intergenic 45.0%
CGAACTACTTCTGGTCCTTT+GGG - chr3.4:93414518-93414537 MS.gene072911:intron 45.0%
CGACGTATTTGTCAGTACAG+TGG - chr3.4:93415929-93415948 MS.gene072911:CDS 45.0%
CGTCGCTCCTTAACAAAAGA+GGG + chr3.4:93416206-93416225 None:intergenic 45.0%
GAACAAGCTCGTTACGATTG+TGG + chr3.4:93413339-93413358 None:intergenic 45.0%
GATGGATCCACAATTCTCAC+CGG + chr3.4:93414679-93414698 None:intergenic 45.0%
GCAATATCGTGTAACTCACC+CGG - chr3.4:93415638-93415657 MS.gene072911:CDS 45.0%
GGTCAGCTGAGATGAAGAAA+TGG + chr3.4:93415568-93415587 None:intergenic 45.0%
GTGAGCTTAGCTCAATTGGT+AGG + chr3.4:93414331-93414350 None:intergenic 45.0%
GTGAGTGAGCTTTCTCAGAT+GGG + chr3.4:93414544-93414563 None:intergenic 45.0%
GTTTCCTTCACTGTTGGACT+TGG - chr3.4:93415808-93415827 MS.gene072911:CDS 45.0%
TAAGAAACTAACCCCGCTGT+CGG + chr3.4:93413380-93413399 None:intergenic 45.0%
TACAGTTCCGGTGAGAATTG+TGG - chr3.4:93414669-93414688 MS.gene072911:intron 45.0%
TAGCAAGAAACCTTGTCGAC+AGG + chr3.4:93416020-93416039 None:intergenic 45.0%
TATATGCAAGGGTTGGGGTT+CGG + chr3.4:93414296-93414315 None:intergenic 45.0%
TCGTCGCTCCTTAACAAAAG+AGG + chr3.4:93416207-93416226 None:intergenic 45.0%
TCTGCTGTACCTGTAGATGA+TGG - chr3.4:93415213-93415232 MS.gene072911:intron 45.0%
TGATGGAGAAAGTTGGATGG+AGG - chr3.4:93415230-93415249 MS.gene072911:intron 45.0%
TGATGGAGAACCATCACAGT+TGG - chr3.4:93415899-93415918 MS.gene072911:CDS 45.0%
! CAATAGGTGGCTCTTTGAGA+GGG + chr3.4:93415956-93415975 None:intergenic 45.0%
! CGGTTAATGGGAGACCATTT+TGG + chr3.4:93415744-93415763 None:intergenic 45.0%
! GTACTGACAAATACGTCGAC+AGG + chr3.4:93415927-93415946 None:intergenic 45.0%
! GTGAATAAGCAGGGTATTCG+AGG - chr3.4:93414269-93414288 MS.gene072911:intron 45.0%
! GTGGGTAAGCATCTTTTACC+GGG + chr3.4:93415659-93415678 None:intergenic 45.0%
! TATCTAGAGTGTAGGCTTGG+GGG - chr3.4:93415314-93415333 MS.gene072911:intron 45.0%
!! TCATCATCTCCATCGACTCT+AGG + chr3.4:93413885-93413904 None:intergenic 45.0%
ACCGTGAGACTTATCTGGAG+AGG - chr3.4:93415760-93415779 MS.gene072911:intron 50.0%
AGCAACAAACACATCACCGG+TGG + chr3.4:93413661-93413680 None:intergenic 50.0%
AGCACTATACCTGGTTGCCT+TGG + chr3.4:93414581-93414600 None:intergenic 50.0%
AGCGGAGGAGGAGATATTGA+AGG - chr3.4:93414817-93414836 MS.gene072911:CDS 50.0%
ATCTGGAGAGGCTTGCCATA+AGG - chr3.4:93415772-93415791 MS.gene072911:intron 50.0%
CAACCTCCTCTTCTCACCAA+TGG - chr3.4:93414041-93414060 MS.gene072911:CDS 50.0%
CAAGCCAAGTCCAACAGTGA+AGG + chr3.4:93415815-93415834 None:intergenic 50.0%
CAGCCGAGTTTGCAAAGATG+TGG - chr3.4:93416090-93416109 MS.gene072911:intron 50.0%
CCCTGTGAGCTTAGCTCAAT+TGG + chr3.4:93414335-93414354 None:intergenic 50.0%
CCGAACTACTTCTGGTCCTT+TGG - chr3.4:93414517-93414536 MS.gene072911:intron 50.0%
CTTCACTGTTGGACTTGGCT+TGG - chr3.4:93415813-93415832 MS.gene072911:CDS 50.0%
GACTGGAAGGAAAGGGTTGA+AGG - chr3.4:93414733-93414752 MS.gene072911:CDS 50.0%
GAGAGGCTTGCCATAAGGTT+TGG - chr3.4:93415777-93415796 MS.gene072911:intron 50.0%
GATGTTGGAACAACACCCAC+CGG - chr3.4:93413642-93413661 MS.gene072911:CDS 50.0%
GCAACAAACACATCACCGGT+GGG + chr3.4:93413660-93413679 None:intergenic 50.0%
GCCTCTCCAGATAAGTCTCA+CGG + chr3.4:93415764-93415783 None:intergenic 50.0%
GCGGAGGAGGAGATATTGAA+GGG - chr3.4:93414818-93414837 MS.gene072911:CDS 50.0%
GCTAAGCTCACAGGGACATA+TGG - chr3.4:93414340-93414359 MS.gene072911:CDS 50.0%
GGAAGGAAAGGGTTGAAGGT+TGG - chr3.4:93414737-93414756 MS.gene072911:CDS 50.0%
GGAGGAGATATTGAAGGGAC+TGG - chr3.4:93414823-93414842 MS.gene072911:CDS 50.0%
GTGTTCCGGCTGATAGTTCT+TGG - chr3.4:93415606-93415625 MS.gene072911:CDS 50.0%
GTTTGGCCATTGGTGAGAAG+AGG + chr3.4:93414050-93414069 None:intergenic 50.0%
TAAGGAGCGACGAGCAATGA+AGG - chr3.4:93416214-93416233 MS.gene072911:CDS 50.0%
TATGCTGATGGGAAAAGCGG+AGG - chr3.4:93414802-93414821 MS.gene072911:CDS 50.0%
! TGTTGACTACCCTGTCGACA+AGG - chr3.4:93416007-93416026 MS.gene072911:intron 50.0%
GCTTTCTCAGATGGGCCCAA+AGG + chr3.4:93414536-93414555 None:intergenic 55.0%
TCAGGGAGTCCTAGAGTCGA+TGG - chr3.4:93413873-93413892 MS.gene072911:intron 55.0%
TCGACAGGAGCCAACTGTGA+TGG + chr3.4:93415912-93415931 None:intergenic 55.0%
TGGCCATTGGTGAGAAGAGG+AGG + chr3.4:93414047-93414066 None:intergenic 55.0%
CGTCACGATTCTGCCGACAG+CGG - chr3.4:93413364-93413383 MS.gene072911:CDS 60.0%
GCTGATGGGAAAAGCGGAGG+AGG - chr3.4:93414805-93414824 MS.gene072911:CDS 60.0%
GTCACGATTCTGCCGACAGC+GGG - chr3.4:93413365-93413384 MS.gene072911:CDS 60.0%
TCACGATTCTGCCGACAGCG+GGG - chr3.4:93413366-93413385 MS.gene072911:CDS 60.0%
GCCAGCAACCATGCCGGAAG+AGG + chr3.4:93413314-93413333 None:intergenic 65.0%
GCCTCTTCCGGCATGGTTGC+TGG - chr3.4:93413310-93413329 MS.gene072911:CDS 65.0%
GTGGGAGCCAGCAACCATGC+CGG + chr3.4:93413320-93413339 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 93413304 93416286 93413304 ID=MS.gene072911
chr3.4 mRNA 93413304 93416286 93413304 ID=MS.gene072911.t1;Parent=MS.gene072911
chr3.4 exon 93416203 93416286 93416203 ID=MS.gene072911.t1.exon1;Parent=MS.gene072911.t1
chr3.4 CDS 93416203 93416286 93416203 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93415804 93415999 93415804 ID=MS.gene072911.t1.exon2;Parent=MS.gene072911.t1
chr3.4 CDS 93415804 93415999 93415804 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93415520 93415713 93415520 ID=MS.gene072911.t1.exon3;Parent=MS.gene072911.t1
chr3.4 CDS 93415520 93415713 93415520 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93415000 93415111 93415000 ID=MS.gene072911.t1.exon4;Parent=MS.gene072911.t1
chr3.4 CDS 93415000 93415111 93415000 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93414721 93414916 93414721 ID=MS.gene072911.t1.exon5;Parent=MS.gene072911.t1
chr3.4 CDS 93414721 93414916 93414721 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93414288 93414384 93414288 ID=MS.gene072911.t1.exon6;Parent=MS.gene072911.t1
chr3.4 CDS 93414288 93414384 93414288 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93413931 93414095 93413931 ID=MS.gene072911.t1.exon7;Parent=MS.gene072911.t1
chr3.4 CDS 93413931 93414095 93413931 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93413797 93413852 93413797 ID=MS.gene072911.t1.exon8;Parent=MS.gene072911.t1
chr3.4 CDS 93413797 93413852 93413797 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
chr3.4 exon 93413304 93413700 93413304 ID=MS.gene072911.t1.exon9;Parent=MS.gene072911.t1
chr3.4 CDS 93413304 93413700 93413304 ID=cds.MS.gene072911.t1;Parent=MS.gene072911.t1
Gene Sequence

>MS.gene072911

ATGGAAGCCTCTTCCGGCATGGTTGCTGGCTCCCACAATCGTAACGAGCTTGTTCGTATTCGTCACGATTCTGCCGACAGCGGGGTTAGTTTCTTACTTTCTCATTTCATTCTACTGATTTTGTCTTACTTACAACTTTAGATCAGATCTGGTTGGTTATAGATTACTCTCAATTTGATCTTCAACTTTTTTATCAGGAATTGATTGATTAATGCTATAATTCTAATCTGGTATCATATGTAGTGTTATAATTTTAATGTAAAATTGTTTATGATATCTTCTTACAGCCGAAACCATTGAAGAATTTGAATGGACAAGTCTGTCATATATGTGGTGAGGATGTTGGAACAACACCCACCGGTGATGTGTTTGTTGCTTGTAATGAATGTGGTTACCCTGTTTGTCGAGATTGTTATGAATATGAGCGAAAAGAAGGCAACAAATCTTGTCCTCAATGCAAAACTAGATACAAAAGGCTCAGAGGTTAGTTAATTACTTAGTTAGTTAGTTTTAATGTGTCTGATCTATTATTATGTGTCTTGATTTTGATTTTAAATGATGAATCTGGATCAGGGAGTCCTAGAGTCGATGGAGATGATGAAGAAGATGATGTTGATGATATCGAGAACGAGTTCAATTATCGACAAGGAAATAATAATAATAATAATAATAATAAGTCAAGGAGACAGTGGGATGATTCAGACAGATCAGCTTCATCTTCTAGACGCGAATATCAGCAACCTCCTCTTCTCACCAATGGCCAAACTGTAATCCTTTGATTCTATTCAACTGTTATAGGCTTTCTAAATATGTTTACATTTGGGAATCTTACTTTAGATTTTGTCTACATATTGTCTTTATTCTTGATATTCTTGAGATAAACAACCGTCAAAAAGTGTTAAGATGAACTTATTACTTTTTTTTTTGGGTCAAGTAGCCTAGTAGCTAGAAATTCACCTCTTAAGGTGAATAAGCAGGGTATTCGAGGTCCGAACCCCAACCCTTGCATATATAATGCAGTGTCCCTACCAATTGAGCTAAGCTCACAGGGACATATGGAATTTTTCTTTATTCTATGTATTTCATGTTTTTTGCAGGAGTATATTTTACTGTGTATTACATGAAATTGTGCATGCATTTTTTATTTATCTTTCACTGACAATTAGTATTGACAGATGTCTGGCGAGATTCCTACACCTGATAATCAATCTGTCCGAACTACTTCTGGTCCTTTGGGCCCATCTGAGAAAGCTCACTCACTTCCCTATATTGATCCAAGGCAACCAGGTATAGTGCTAACTTGAATTTGTGCTATATTTAGTTGTTAGATTATTGTGATTTTACAATTGACTGTATATTTGATATTACAGTTCCGGTGAGAATTGTGGATCCATCAAAGGACTTAAACTCATATGGTTTGGGAAATGTTGACTGGAAGGAAAGGGTTGAAGGTTGGAAGCTGAAGCACGAGAAAAATATGGTACAGATGACTGGTAGATATGCTGATGGGAAAAGCGGAGGAGGAGATATTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGTAAGCCACTTATTCTGTTTGGTTTGATGTTTAATGACTAGCTAATCATATGTGTGAGGTATCAGGGAGCATTCATTGTTTGTTTATGCTAGAGGCTCAATTTATTTTTATATGGAAAGTGTTCAAAGCAATTTTCATTCTCCTTCTCATGGTTGTCAAGACTGCTATCCAAACAATAGAGTGTATTGATCTTGTTACCTCTTCAAGAGTTGGATCACATTTGAAATCACAATTAATAAGATCAGATTGAGAATGGGATTGTTTAACCAAAAGGGACATTTTTTGGGTCACGATGTGCAACTCTGATCATCTATTTGCATATTGAGGTGGTAGTAGGGCATCCTCTGCTGTACCTGTAGATGATGGAGAAAGTTGGATGGAGGAGATTAGTGAAGATGTTAATGTTATGGAGGTTGATTATCCCAATTGGCAAGTTAGGGATTTTATCTAGAGTGTAGGCTTGGGGGTTTTTTTTTTTTGGTGGACTTTTGGTTGTGTTATGTTTGAATTTTAGCAAACCTAATGTTATGTATGTTTCTCATTATGACTTATTTTGGGTGTCATGCTTACAAAAGTTCTGTCGAGTTTACTTTAAATATTTACTTGGATTGAATTTCATTTCAAGTTAAAATGGCCCTTTGTTTCTGTTTTTGACAGGGTTGATGATGCTCGACAACCTATGAGTCGGATTGTACCCATTTCTTCATCTCAGCTGACCCCTTATCGTGTTGTCATCGTGTTCCGGCTGATAGTTCTTGGTTTCTTCTTGCAATATCGTGTAACTCACCCGGTAAAAGATGCTTACCCACTGTGGTTGACTTCAGTTATCTGTGAGATTTGGTTTGCATTTTCCTGGATTTTGGATCAGTTTCCAAAATGGTCTCCCATTAACCGTGAGACTTATCTGGAGAGGCTTGCCATAAGGTTTGGATTGCTATGTTTCCTTCACTGTTGGACTTGGCTTGGTTTAGCCATGATGCGACATTTTCTGTTCCACTAATCTTAGTTTGTCTTGTGTAGATATGATCGTGATGGAGAACCATCACAGTTGGCTCCTGTCGACGTATTTGTCAGTACAGTGGACCCTCTCAAAGAGCCACCTATTGTAACTGCAAACACTGTTTTGTCTATACTCGCTGTTGACTACCCTGTCGACAAGGTTTCTTGCTATGTATCTGATGATGGTTCAGCTATGTTGAGTTTTGAAGCCTTATCTGAAACAGCCGAGTTTGCAAAGATGTGGGTGCCCTTTTGCAAAAAACACAGTATTGAGCCAAGAGCACCTGAATTTTATTTTCTTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCCTCTTTTGTTAAGGAGCGACGAGCAATGAAGGTTGTTTTTGAAGCATCATGTTTCCATTTCCAGTTCAATATTTATTTCTAG
Protein sequence

>MS.gene072911.t1

MEASSGMVAGSHNRNELVRIRHDSADSGPKPLKNLNGQVCHICGEDVGTTPTGDVFVACNECGYPVCRDCYEYERKEGNKSCPQCKTRYKRLRGSPRVDGDDEEDDVDDIENEFNYRQGNNNNNNNNKSRRQWDDSDRSASSSRREYQQPPLLTNGQTMSGEIPTPDNQSVRTTSGPLGPSEKAHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKHEKNMVQMTGRYADGKSGGGDIEGTGSNGEELQMASSAVPVDDGESWMEEISEDVNVMEVDYPNWQLKWPFVSVFDRVDDARQPMSRIVPISSSQLTPYRVVIVFRLIVLGFFLQYRVTHPFPKWSPINRETYLERLAIRYDRDGEPSQLAPVDVFVSTVDPLKEPPIVTANTVLSILAVDYPVDKVSCYVSDDGSAMLSFEALSETAEFAKMWVPFCKKHSIEPRAPEFYFLQKIDYLKDKVQPSFVKERRAMKVVFEASCFHFQFNIYF