Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073476.t1 | AES65156.2 | 86.8 | 1201 | 80 | 6 | 1 | 1137 | 26 | 1211 | 0.00E+00 | 1948.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073476.t1 | F4K1J4 | 32.7 | 1276 | 658 | 28 | 38 | 1135 | 115 | 1367 | 2.1e-139 | 498.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073476.t1 | G7IG27 | 86.8 | 1201 | 80 | 6 | 1 | 1137 | 26 | 1211 | 0.0e+00 | 1948.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene073476.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052307 | MS.gene073476 | 0.81804 | 2.41E-52 | -1.69E-46 |
MS.gene052609 | MS.gene073476 | 0.866248 | 3.28E-65 | -1.69E-46 |
MS.gene058638 | MS.gene073476 | 0.820561 | 6.43E-53 | -1.69E-46 |
MS.gene058639 | MS.gene073476 | 0.814069 | 1.86E-51 | -1.69E-46 |
MS.gene060933 | MS.gene073476 | 0.820911 | 5.34E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073476.t1 | MTR_2g036060 | 86.928 | 1201 | 78 | 7 | 1 | 1137 | 1 | 1186 | 0.0 | 2066 |
MS.gene073476.t1 | MTR_2g036060 | 86.928 | 1201 | 78 | 7 | 1 | 1137 | 26 | 1211 | 0.0 | 2065 |
MS.gene073476.t1 | MTR_7g021365 | 48.810 | 84 | 42 | 1 | 1033 | 1115 | 904 | 987 | 4.34e-17 | 87.4 |
MS.gene073476.t1 | MTR_8g027725 | 35.135 | 148 | 80 | 3 | 969 | 1115 | 755 | 887 | 4.39e-16 | 84.3 |
MS.gene073476.t1 | MTR_8g027725 | 35.135 | 148 | 80 | 3 | 969 | 1115 | 740 | 872 | 4.42e-16 | 84.3 |
MS.gene073476.t1 | MTR_1g008230 | 45.349 | 86 | 46 | 1 | 1030 | 1115 | 610 | 694 | 2.15e-15 | 81.6 |
MS.gene073476.t1 | MTR_1g008230 | 45.349 | 86 | 46 | 1 | 1030 | 1115 | 888 | 972 | 2.48e-15 | 81.6 |
MS.gene073476.t1 | MTR_3g091310 | 48.148 | 81 | 41 | 1 | 1035 | 1115 | 922 | 1001 | 3.47e-15 | 81.3 |
MS.gene073476.t1 | MTR_3g091310 | 48.148 | 81 | 41 | 1 | 1035 | 1115 | 828 | 907 | 3.96e-15 | 81.3 |
MS.gene073476.t1 | MTR_1g012890 | 36.792 | 106 | 63 | 2 | 1034 | 1135 | 223 | 328 | 1.02e-13 | 74.7 |
MS.gene073476.t1 | MTR_7g117355 | 43.210 | 81 | 45 | 1 | 1035 | 1115 | 823 | 902 | 1.88e-13 | 75.5 |
MS.gene073476.t1 | MTR_0071s0100 | 35.294 | 85 | 55 | 0 | 1032 | 1116 | 208 | 292 | 2.17e-12 | 70.9 |
MS.gene073476.t1 | MTR_1g098000 | 37.931 | 87 | 54 | 0 | 1030 | 1116 | 91 | 177 | 2.77e-12 | 70.9 |
MS.gene073476.t1 | MTR_1g098370 | 37.931 | 87 | 54 | 0 | 1030 | 1116 | 94 | 180 | 3.54e-12 | 70.9 |
MS.gene073476.t1 | MTR_1g012910 | 34.959 | 123 | 68 | 4 | 1005 | 1115 | 489 | 611 | 1.30e-11 | 69.3 |
MS.gene073476.t1 | MTR_1g012910 | 34.959 | 123 | 68 | 4 | 1005 | 1115 | 326 | 448 | 1.61e-11 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT5G42400 | 34.281 | 668 | 366 | 16 | 38 | 662 | 115 | 752 | 1.97e-92 | 325 |
MS.gene073476.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 696 | 1135 | 944 | 1350 | 9.39e-75 | 272 |
MS.gene073476.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1013 | 1116 | 902 | 1002 | 6.73e-19 | 93.6 |
MS.gene073476.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1013 | 1116 | 902 | 1002 | 6.73e-19 | 93.6 |
MS.gene073476.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1013 | 1116 | 902 | 1002 | 6.73e-19 | 93.6 |
MS.gene073476.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1013 | 1116 | 902 | 1002 | 6.73e-19 | 93.6 |
MS.gene073476.t1 | AT2G31650 | 35.238 | 210 | 106 | 7 | 919 | 1115 | 788 | 980 | 1.88e-18 | 92.0 |
MS.gene073476.t1 | AT4G27910 | 49.383 | 81 | 40 | 1 | 1035 | 1115 | 886 | 965 | 4.34e-16 | 84.3 |
MS.gene073476.t1 | AT5G53430 | 48.780 | 82 | 41 | 1 | 1034 | 1115 | 901 | 981 | 9.82e-16 | 83.2 |
MS.gene073476.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1046 | 1115 | 101 | 170 | 2.60e-14 | 77.4 |
MS.gene073476.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1046 | 1115 | 101 | 170 | 2.70e-14 | 77.4 |
MS.gene073476.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1046 | 1115 | 101 | 170 | 2.70e-14 | 77.4 |
MS.gene073476.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1046 | 1115 | 101 | 170 | 2.81e-14 | 77.4 |
MS.gene073476.t1 | AT3G61740 | 34.194 | 155 | 79 | 4 | 972 | 1115 | 777 | 919 | 9.32e-14 | 76.6 |
MS.gene073476.t1 | AT3G61740 | 44.444 | 81 | 44 | 1 | 1035 | 1115 | 876 | 955 | 1.21e-13 | 76.3 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAGCATGTAACGTGTATT+TGG | 0.173701 | 2.1:+55036311 | None:intergenic |
TCTCCTAATAACATCAAAAT+TGG | 0.186129 | 2.1:-55041723 | MS.gene073476:CDS |
TTGGATTTATGAGGATAAAA+AGG | 0.186390 | 2.1:-55043226 | MS.gene073476:CDS |
AAGCCTGACCGTTCAAAATA+TGG | 0.229760 | 2.1:+55042175 | None:intergenic |
TTGCACGTTGAACAATAAAT+TGG | 0.240841 | 2.1:-55042338 | MS.gene073476:intron |
CCTACCATTTAGTTTCTCTT+TGG | 0.255660 | 2.1:+55040135 | None:intergenic |
ATCACCAACTCCATTGCTTT+TGG | 0.256607 | 2.1:+55042540 | None:intergenic |
GTGCTAACTTCGATACTTTC+TGG | 0.257191 | 2.1:+55040387 | None:intergenic |
GTGACATATTCTGTAATCTT+AGG | 0.262183 | 2.1:+55041135 | None:intergenic |
TGATGTTATTAGGAGATAAA+AGG | 0.264930 | 2.1:+55041730 | None:intergenic |
GGAAAGGCTAAGATGATTAA+AGG | 0.273433 | 2.1:-55040500 | MS.gene073476:CDS |
AGTGAAGGAAGGCACAAAAT+TGG | 0.287240 | 2.1:-55040747 | MS.gene073476:CDS |
TGCCTCAGTTACTTCTTTGC+TGG | 0.289840 | 2.1:+55039777 | None:intergenic |
TGTTGAGCTTGCTGCTGTTA+TGG | 0.293151 | 2.1:-55043474 | MS.gene073476:CDS |
GACTTTGTCATTGAGTATAT+TGG | 0.296267 | 2.1:-55039288 | MS.gene073476:CDS |
AAGTTAAGGAAAGATGTTTC+TGG | 0.308785 | 2.1:-55040569 | MS.gene073476:CDS |
GATTTGTGTCCTAGATCTAT+TGG | 0.317586 | 2.1:-55039724 | MS.gene073476:CDS |
CCATTTCAGAGTTGATTTCC+TGG | 0.317624 | 2.1:-55043182 | MS.gene073476:CDS |
TCCCATCTAGCACAACTTTA+CGG | 0.322868 | 2.1:+55042446 | None:intergenic |
TTGCTCCTCTTCTCAGGATA+TGG | 0.329993 | 2.1:-55043516 | MS.gene073476:CDS |
ATCTTCTACAACGGGCTTAG+AGG | 0.331336 | 2.1:+55040622 | None:intergenic |
GTCTTTCTGCAAGAACAAAT+AGG | 0.340439 | 2.1:-55039549 | MS.gene073476:CDS |
TCATTACACCCATGTGCAAT+TGG | 0.342636 | 2.1:+55042476 | None:intergenic |
ATCTCCAAAGAGAAACTAAA+TGG | 0.343265 | 2.1:-55040139 | MS.gene073476:intron |
TCACTAAATATGTCTTTCTC+TGG | 0.343385 | 2.1:+55041536 | None:intergenic |
TCCCGTAAAGTTGTGCTAGA+TGG | 0.346597 | 2.1:-55042448 | MS.gene073476:CDS |
TCTCTGGGGAAGGAATTAAT+TGG | 0.347161 | 2.1:+55041552 | None:intergenic |
TGTGAAACAGACTTTGAATC+AGG | 0.348335 | 2.1:+55043443 | None:intergenic |
TTGACAGATGATTGAGGCTT+AGG | 0.356307 | 2.1:+55041961 | None:intergenic |
CCCATCTAGCACAACTTTAC+GGG | 0.362728 | 2.1:+55042447 | None:intergenic |
TTCTGCTAAATCCAAGTCAT+TGG | 0.364175 | 2.1:-55039746 | MS.gene073476:CDS |
CCTGGAGGAAGAAGAAATAT+TGG | 0.364781 | 2.1:-55041990 | MS.gene073476:CDS |
AAGGAAGGCGCAGAAAGTTC+TGG | 0.365735 | 2.1:-55040710 | MS.gene073476:CDS |
GTTGTGCTAGATGGGATTAT+TGG | 0.365764 | 2.1:-55042439 | MS.gene073476:CDS |
CTGGCTAGTTTCATTCTTCA+AGG | 0.373079 | 2.1:+55040406 | None:intergenic |
CATTTGAATGATGCTACTTT+GGG | 0.377631 | 2.1:-55040812 | MS.gene073476:CDS |
GCATTTGAATGATGCTACTT+TGG | 0.382771 | 2.1:-55040813 | MS.gene073476:CDS |
ATCTCAGTTGTCAAATAGTA+AGG | 0.392242 | 2.1:-55039572 | MS.gene073476:CDS |
ATGGATGGGAATGGCATAAA+TGG | 0.394098 | 2.1:-55039681 | MS.gene073476:CDS |
TCTGAAAGTGCCTCAATTGA+AGG | 0.399512 | 2.1:-55039482 | MS.gene073476:intron |
CGGGATAATTTCTTCTCAAA+TGG | 0.406124 | 2.1:-55043357 | MS.gene073476:intron |
CAATATGAGAAGATGGGAAT+TGG | 0.406771 | 2.1:-55038597 | MS.gene073476:CDS |
TGACAAATTCTTGCGGTGAT+AGG | 0.407599 | 2.1:+55040661 | None:intergenic |
TCAGCATGTAACGTGTATTT+GGG | 0.407901 | 2.1:+55036312 | None:intergenic |
CCACAAGTAGAGCACGTGTC+AGG | 0.416866 | 2.1:-55039642 | MS.gene073476:CDS |
CCCGTTGTAGAAGATAATTC+AGG | 0.419889 | 2.1:-55040614 | MS.gene073476:CDS |
CCAGGAAATCAACTCTGAAA+TGG | 0.421721 | 2.1:+55043182 | None:intergenic |
GACAAATTGCTCCTCTTCTC+AGG | 0.422116 | 2.1:-55043522 | MS.gene073476:CDS |
TGTTCGAAGTGTTGTTGAAA+AGG | 0.422666 | 2.1:-55041582 | MS.gene073476:CDS |
ACAAAGTCCTCTGCTTCAAT+TGG | 0.428283 | 2.1:+55039303 | None:intergenic |
CGTATCTCAGAGATGGTTGC+TGG | 0.428715 | 2.1:-55041417 | MS.gene073476:CDS |
CATTAAGGAGCAGTTATATG+AGG | 0.431991 | 2.1:-55043705 | MS.gene073476:CDS |
CGACTGGGGTCTTGTTGCCT+TGG | 0.434606 | 2.1:-55039328 | MS.gene073476:CDS |
CATTACACCCATGTGCAATT+GGG | 0.437067 | 2.1:+55042477 | None:intergenic |
GTGAAGGAAGGCACAAAATT+GGG | 0.441161 | 2.1:-55040746 | MS.gene073476:CDS |
TTACATTCAACTGTTCTTGA+AGG | 0.443516 | 2.1:+55041159 | None:intergenic |
CCAATATTTCTTCTTCCTCC+AGG | 0.444169 | 2.1:+55041990 | None:intergenic |
CTAGCACATCCAATAGATCT+AGG | 0.445418 | 2.1:+55039715 | None:intergenic |
CTTCAAGGATAATTGATCAC+TGG | 0.445488 | 2.1:+55040421 | None:intergenic |
AGGTCCAGGGAAGGAGCCTT+TGG | 0.446348 | 2.1:-55040594 | MS.gene073476:CDS |
TTACCCCATGACCACGAGAC+TGG | 0.447116 | 2.1:+55040998 | None:intergenic |
TCAACGAATGTTAAGTCAGT+TGG | 0.448542 | 2.1:-55042129 | MS.gene073476:CDS |
CACTAAATATGTCTTTCTCT+GGG | 0.451270 | 2.1:+55041537 | None:intergenic |
AGGAGCCTTTGGCTAAGTTA+AGG | 0.452827 | 2.1:-55040583 | MS.gene073476:CDS |
CTGTTATTCAGACGGTGTTA+CGG | 0.453219 | 2.1:-55040278 | MS.gene073476:intron |
CCTGAATTATCTTCTACAAC+GGG | 0.456131 | 2.1:+55040614 | None:intergenic |
CCCGTAAAGTTGTGCTAGAT+GGG | 0.460102 | 2.1:-55042447 | MS.gene073476:CDS |
TAAGATGATTAAAGGGAAGA+AGG | 0.462336 | 2.1:-55040492 | MS.gene073476:CDS |
GGATACACAGGAAGCTCAAA+TGG | 0.462764 | 2.1:+55043662 | None:intergenic |
TTTATGTACAGTTGGCTCTC+AGG | 0.465791 | 2.1:-55041833 | MS.gene073476:intron |
TCTTTCTGCAAGAACAAATA+GGG | 0.465926 | 2.1:-55039548 | MS.gene073476:CDS |
AATTTCCAGTCTCGTGGTCA+TGG | 0.467079 | 2.1:-55041003 | MS.gene073476:CDS |
ATATAACTGCTCCTTAATGT+AGG | 0.467895 | 2.1:+55043709 | None:intergenic |
AGAATGCTGTTGGATTTATG+AGG | 0.473819 | 2.1:-55043235 | MS.gene073476:CDS |
GAAAGGCTAAGATGATTAAA+GGG | 0.477085 | 2.1:-55040499 | MS.gene073476:CDS |
CTGACACGTGCTCTACTTGT+GGG | 0.479131 | 2.1:+55039643 | None:intergenic |
TTAGCCAAAGGCTCCTTCCC+TGG | 0.479653 | 2.1:+55040590 | None:intergenic |
AATGATGCTACTTTGGGACT+AGG | 0.479668 | 2.1:-55040806 | MS.gene073476:CDS |
CCTGACACGTGCTCTACTTG+TGG | 0.480399 | 2.1:+55039642 | None:intergenic |
TGGAGAATTAATTCGTCCTC+GGG | 0.481722 | 2.1:-55039268 | MS.gene073476:intron |
AGTTGGGAGGAGAATGCTGT+TGG | 0.481910 | 2.1:-55043245 | MS.gene073476:CDS |
AACATTCGTTGAAGACGGTC+TGG | 0.483791 | 2.1:+55042140 | None:intergenic |
TGAGCTTCAATATGAGAAGA+TGG | 0.485383 | 2.1:-55038604 | MS.gene073476:CDS |
TCTTGCTGCAGCTGAGGGTG+CGG | 0.485924 | 2.1:-55039509 | MS.gene073476:CDS |
ATTGGGACTAGGAAAAGTTA+AGG | 0.486627 | 2.1:-55040729 | MS.gene073476:CDS |
CCTGTGTATCCTGTCATCAA+TGG | 0.486921 | 2.1:-55043650 | MS.gene073476:CDS |
TCTTCTCAGGATATGGTACA+TGG | 0.487169 | 2.1:-55043509 | MS.gene073476:CDS |
ACATCGCCGTTAACATTTGA+CGG | 0.488330 | 2.1:+55043857 | None:intergenic |
CTCTGCTTCAATTGGCTCCA+AGG | 0.488706 | 2.1:+55039311 | None:intergenic |
TTACTATTTGACAACTGAGA+TGG | 0.489885 | 2.1:+55039574 | None:intergenic |
AAGCTCAAATGGCAAGAATC+CGG | 0.491377 | 2.1:+55043673 | None:intergenic |
TCTTCAATCACCTTCAATTG+AGG | 0.493337 | 2.1:+55039472 | None:intergenic |
TTCAAGGATAATTGATCACT+GGG | 0.494291 | 2.1:+55040422 | None:intergenic |
GTAGAAGATAATTCAGGTCC+AGG | 0.494526 | 2.1:-55040608 | MS.gene073476:CDS |
CATTTGTTCCCAATTGCACA+TGG | 0.496778 | 2.1:-55042485 | MS.gene073476:CDS |
TGTGCTAGGACTTCTATTGA+TGG | 0.499906 | 2.1:-55039700 | MS.gene073476:CDS |
AAGATATCCATGGTGGTGCC+AGG | 0.501577 | 2.1:+55043164 | None:intergenic |
CAGACTCGATGACGGTTATG+TGG | 0.501932 | 2.1:-55038559 | MS.gene073476:intron |
ATTATTGTGCCATTGATGAC+AGG | 0.502716 | 2.1:+55043641 | None:intergenic |
TTATATGAGGGTTTAACTAC+CGG | 0.503467 | 2.1:-55043692 | MS.gene073476:CDS |
TCTGGAGTTCCTCTAGCGAT+TGG | 0.504197 | 2.1:-55040692 | MS.gene073476:CDS |
CACTCACACCAGGGTTTACG+TGG | 0.504558 | 2.1:-55043800 | MS.gene073476:CDS |
AACCGTCATCGAGTCTGAAA+AGG | 0.508500 | 2.1:+55038565 | None:intergenic |
AACCCGGTGGAAACATGGTC+AGG | 0.510121 | 2.1:+55043584 | None:intergenic |
AGCAGCCCGTCAAATGTTAA+CGG | 0.511006 | 2.1:-55043863 | MS.gene073476:CDS |
ATTTCCAGTCTCGTGGTCAT+GGG | 0.513236 | 2.1:-55041002 | MS.gene073476:CDS |
CATCGCCGTTAACATTTGAC+GGG | 0.515981 | 2.1:+55043858 | None:intergenic |
TAACCTTCTTGCTGCAGCTG+AGG | 0.516247 | 2.1:-55039515 | MS.gene073476:CDS |
TTGGAGAATTAATTCGTCCT+CGG | 0.516910 | 2.1:-55039269 | MS.gene073476:CDS |
TAATATTTCACACTCACACC+AGG | 0.517564 | 2.1:-55043810 | MS.gene073476:CDS |
AGCCTGACCGTTCAAAATAT+GGG | 0.519429 | 2.1:+55042176 | None:intergenic |
CTCTTTGGAGATATGACCAG+TGG | 0.519488 | 2.1:+55040150 | None:intergenic |
AATGTGCGGTCCCTACATTA+AGG | 0.519889 | 2.1:-55043720 | MS.gene073476:CDS |
CAAAACCTTTGCGGGATGAG+AGG | 0.521228 | 2.1:+55039831 | None:intergenic |
TGAGCTTAAATCCATGTGAC+TGG | 0.523764 | 2.1:+55043391 | None:intergenic |
GTTGATGCTGATAACCAGTC+TGG | 0.526674 | 2.1:-55041789 | MS.gene073476:CDS |
ATGATGAAGTTCTAAAAGAC+TGG | 0.526710 | 2.1:-55041086 | MS.gene073476:CDS |
AACCTTCTTGCTGCAGCTGA+GGG | 0.528246 | 2.1:-55039514 | MS.gene073476:CDS |
ACCAGTGGTCTTCCTCTGAA+TGG | 0.528448 | 2.1:+55040165 | None:intergenic |
ATGCAAACCCGGTGGAAACA+TGG | 0.528796 | 2.1:+55043579 | None:intergenic |
CTGTTGCAATAACTCCAGAC+TGG | 0.529624 | 2.1:+55041775 | None:intergenic |
CGGGTTTGCATATTTGAGCA+TGG | 0.532298 | 2.1:-55043567 | MS.gene073476:CDS |
AAAATTGGAAATACAGCAGA+AGG | 0.535404 | 2.1:-55041708 | MS.gene073476:intron |
AGGTGCAGACTCACTTGGAA+TGG | 0.535622 | 2.1:+55042200 | None:intergenic |
TATCCTGACCATGTTTCCAC+CGG | 0.536239 | 2.1:-55043587 | MS.gene073476:CDS |
ATCATTCCTTGCAAGTCATG+TGG | 0.540334 | 2.1:-55042053 | MS.gene073476:CDS |
TATAACTGCTCCTTAATGTA+GGG | 0.545813 | 2.1:+55043710 | None:intergenic |
TAGGACTTCTATTGATGGAT+GGG | 0.547014 | 2.1:-55039695 | MS.gene073476:CDS |
CACCCTCAGCTGCAGCAAGA+AGG | 0.548860 | 2.1:+55039512 | None:intergenic |
CTAGGACTTCTATTGATGGA+TGG | 0.550118 | 2.1:-55039696 | MS.gene073476:CDS |
GAGATTGATGACCTACCACC+TGG | 0.551551 | 2.1:-55041234 | MS.gene073476:CDS |
AAAGTAACTGCTACTAAATG+TGG | 0.552941 | 2.1:-55040521 | MS.gene073476:CDS |
TGGGAAGGTGCAGACTCACT+TGG | 0.553963 | 2.1:+55042195 | None:intergenic |
CACAAGTAGAGCACGTGTCA+GGG | 0.556561 | 2.1:-55039641 | MS.gene073476:CDS |
ATATGGTACATGGGCAAGAT+CGG | 0.558546 | 2.1:-55043499 | MS.gene073476:CDS |
ATTAAGGAGCAGTTATATGA+GGG | 0.558740 | 2.1:-55043704 | MS.gene073476:CDS |
TTTGGAATCTGATCCACAGA+TGG | 0.560189 | 2.1:+55042558 | None:intergenic |
TCTTTCCTTAACTTAGCCAA+AGG | 0.562647 | 2.1:+55040578 | None:intergenic |
GATTCATTGACAGATGATTG+AGG | 0.563560 | 2.1:+55041955 | None:intergenic |
GTGTGGACATTTAAATGATG+TGG | 0.563832 | 2.1:-55041268 | MS.gene073476:CDS |
GAAGTCGTTCAGTGCAAACA+AGG | 0.566037 | 2.1:-55040837 | MS.gene073476:CDS |
TAAGCTCAGAGGCATTCAGC+GGG | 0.569394 | 2.1:-55043376 | MS.gene073476:CDS |
AATATGTCTTTCTCTGGGGA+AGG | 0.571769 | 2.1:+55041542 | None:intergenic |
GACACGCATTCTTGAAAGTG+TGG | 0.572215 | 2.1:-55041648 | MS.gene073476:CDS |
CACTAAGGAATCCAGTCACA+TGG | 0.572472 | 2.1:-55043402 | MS.gene073476:CDS |
AGGACACAAATCCAATGACT+TGG | 0.572553 | 2.1:+55039735 | None:intergenic |
AACTGCTACTAAATGTGGAA+AGG | 0.572985 | 2.1:-55040516 | MS.gene073476:CDS |
AAATGATGTGGTTGATGAAG+AGG | 0.573878 | 2.1:-55041256 | MS.gene073476:CDS |
ACCTGAATTATCTTCTACAA+CGG | 0.574706 | 2.1:+55040613 | None:intergenic |
GACTTAACATTCGTTGAAGA+CGG | 0.575920 | 2.1:+55042135 | None:intergenic |
GAAGGCACAAAATTGGGACT+AGG | 0.577142 | 2.1:-55040740 | MS.gene073476:CDS |
CAGCAACCATCTCTGAGATA+CGG | 0.578990 | 2.1:+55041418 | None:intergenic |
TTAGGAGATAAAAGGAACTC+AGG | 0.580174 | 2.1:+55041738 | None:intergenic |
TACTGTTTAAAATAATTCAA+CGG | 0.581012 | 2.1:+55043608 | None:intergenic |
CTTTCCGTGACAAATTCTTG+CGG | 0.581755 | 2.1:+55040654 | None:intergenic |
AGATAATTCAGGTCCAGGGA+AGG | 0.585334 | 2.1:-55040603 | MS.gene073476:CDS |
CTAGATCTATTGGATGTGCT+AGG | 0.585787 | 2.1:-55039714 | MS.gene073476:CDS |
CTTGGAGCCAATTGAAGCAG+AGG | 0.586421 | 2.1:-55039310 | MS.gene073476:CDS |
ATTTATTAACCATTCTTGTG+AGG | 0.586731 | 2.1:-55037886 | MS.gene073476:intron |
CATGCTCAAATATGCAAACC+CGG | 0.588163 | 2.1:+55043568 | None:intergenic |
AGAAGGATACATCTTCTAAG+AGG | 0.588713 | 2.1:-55040475 | MS.gene073476:CDS |
GATTCCAAAAGCAATGGAGT+TGG | 0.589499 | 2.1:-55042544 | MS.gene073476:CDS |
GAGCTTCAATATGAGAAGAT+GGG | 0.589585 | 2.1:-55038603 | MS.gene073476:CDS |
TGAGCTTCACTGCTCTGCAA+AGG | 0.589761 | 2.1:-55041621 | MS.gene073476:CDS |
ACTGTTACTGTATACTACAC+TGG | 0.591630 | 2.1:-55036279 | MS.gene073476:CDS |
ATATGTCAATGACTGCACTA+AGG | 0.592044 | 2.1:-55043417 | MS.gene073476:CDS |
TGATAATAGTGTTGGCGTGA+AGG | 0.592885 | 2.1:-55040215 | MS.gene073476:CDS |
ATGTACCATATCCTGAGAAG+AGG | 0.596505 | 2.1:+55043511 | None:intergenic |
TACATCCTCTCATCCCGCAA+AGG | 0.597566 | 2.1:-55039836 | MS.gene073476:CDS |
AAAGGAGCAAGATACACGAC+TGG | 0.597716 | 2.1:-55039344 | MS.gene073476:CDS |
TTGAATCTTCAAGATATCCA+TGG | 0.599943 | 2.1:+55043154 | None:intergenic |
AAAGCGTTTCAAGAATTGTG+TGG | 0.600656 | 2.1:-55041285 | MS.gene073476:CDS |
TGCATTCCACATGACTTGCA+AGG | 0.600696 | 2.1:+55042047 | None:intergenic |
CTTCTATTGATGGATGGGAA+TGG | 0.601171 | 2.1:-55039690 | MS.gene073476:CDS |
GCATGGATTTCTCTAACGCA+AGG | 0.602451 | 2.1:-55043550 | MS.gene073476:CDS |
GGATCAGATTCCAAAAGCAA+TGG | 0.603808 | 2.1:-55042550 | MS.gene073476:CDS |
GTGAAACAGACTTTGAATCA+GGG | 0.603849 | 2.1:+55043444 | None:intergenic |
GCGTCAACTGATAATAGTGT+TGG | 0.605461 | 2.1:-55040223 | MS.gene073476:CDS |
GTATACTTTCCAATCGCTAG+AGG | 0.611114 | 2.1:+55040683 | None:intergenic |
GATACATGTGGAACCATCTG+TGG | 0.612739 | 2.1:-55042571 | MS.gene073476:CDS |
GTTGATGCTACAAAGAGAGG+TGG | 0.614494 | 2.1:-55037918 | MS.gene073476:CDS |
TTGATTTCCTGGCACCACCA+TGG | 0.620952 | 2.1:-55043171 | MS.gene073476:CDS |
TTTCTGGAGAAGTGAATGAG+AGG | 0.621788 | 2.1:-55040553 | MS.gene073476:CDS |
AAGAAGAATTTCCAGTCTCG+TGG | 0.621984 | 2.1:-55041009 | MS.gene073476:CDS |
TGACTGCCGTATCTCAGAGA+TGG | 0.622254 | 2.1:-55041424 | MS.gene073476:CDS |
ACCATTCAGAGGAAGACCAC+TGG | 0.628594 | 2.1:-55040166 | MS.gene073476:CDS |
TAGAAGATAATTCAGGTCCA+GGG | 0.630217 | 2.1:-55040607 | MS.gene073476:CDS |
TCTCAGTTGTCAAATAGTAA+GGG | 0.632048 | 2.1:-55039571 | MS.gene073476:CDS |
TGAGAGGATGTAACACCACC+TGG | 0.634910 | 2.1:+55039847 | None:intergenic |
TTGATGCTACAAAGAGAGGT+GGG | 0.635479 | 2.1:-55037917 | MS.gene073476:CDS |
AGCATCAACATTGCTTACAG+AGG | 0.636898 | 2.1:+55041803 | None:intergenic |
AGAGAAAGACATATTTAGTG+AGG | 0.639055 | 2.1:-55041534 | MS.gene073476:intron |
ACAAGTAGAGCACGTGTCAG+GGG | 0.639473 | 2.1:-55039640 | MS.gene073476:CDS |
TCTGCTGTAAATGCAATGAA+AGG | 0.640153 | 2.1:-55042595 | MS.gene073476:CDS |
ATCAACTCTGAAATGGAATG+TGG | 0.641513 | 2.1:+55043189 | None:intergenic |
GCACAAAGCCACGTAAACCC+TGG | 0.642230 | 2.1:+55043792 | None:intergenic |
TGACCGTTCAAAATATGGGA+AGG | 0.642758 | 2.1:+55042180 | None:intergenic |
ATCCTGACCATGTTTCCACC+GGG | 0.643417 | 2.1:-55043586 | MS.gene073476:CDS |
ATTTGTTCCCAATTGCACAT+GGG | 0.645487 | 2.1:-55042484 | MS.gene073476:CDS |
GGACTAGGAAAAGTTAAGGA+AGG | 0.646496 | 2.1:-55040725 | MS.gene073476:CDS |
TTTCCAGTCTCGTGGTCATG+GGG | 0.647882 | 2.1:-55041001 | MS.gene073476:intron |
CTTCTCAGGATATGGTACAT+GGG | 0.650253 | 2.1:-55043508 | MS.gene073476:CDS |
AACTGTGCTAGTAGAACACA+CGG | 0.651364 | 2.1:+55043832 | None:intergenic |
GCAAAGAAGTAACTGAGGCA+CGG | 0.652387 | 2.1:-55039774 | MS.gene073476:CDS |
GGACTAGGAAAAGTGAAGGA+AGG | 0.653313 | 2.1:-55040758 | MS.gene073476:CDS |
AAGGAGCAAGATACACGACT+GGG | 0.653984 | 2.1:-55039343 | MS.gene073476:CDS |
TTAAGCTCAGAGGCATTCAG+CGG | 0.654238 | 2.1:-55043377 | MS.gene073476:CDS |
TACAGCAGACAGCAACACAA+AGG | 0.655940 | 2.1:+55042609 | None:intergenic |
TTCTGGAGAAGTGAATGAGA+GGG | 0.658409 | 2.1:-55040552 | MS.gene073476:CDS |
TGGATGTATGTGAATGAACA+TGG | 0.664078 | 2.1:-55043746 | MS.gene073476:CDS |
ACACTGATGTCACCATTCAG+AGG | 0.665148 | 2.1:-55040177 | MS.gene073476:CDS |
ACTAAATATGTCTTTCTCTG+GGG | 0.667298 | 2.1:+55041538 | None:intergenic |
AATATTTCACACTCACACCA+GGG | 0.671469 | 2.1:-55043809 | MS.gene073476:CDS |
TCACATGGATTTAAGCTCAG+AGG | 0.673860 | 2.1:-55043387 | MS.gene073476:CDS |
TAGGTTGATGCTACAAAGAG+AGG | 0.676637 | 2.1:-55037921 | MS.gene073476:CDS |
TAATAGTGTTGGCGTGAAGG+TGG | 0.685213 | 2.1:-55040212 | MS.gene073476:CDS |
CCATTGATGACAGGATACAC+AGG | 0.685505 | 2.1:+55043650 | None:intergenic |
ATCACCGCAAGAATTTGTCA+CGG | 0.691897 | 2.1:-55040658 | MS.gene073476:CDS |
AGTGGGACTAGGAAAAGTGA+AGG | 0.694009 | 2.1:-55040762 | MS.gene073476:CDS |
AAAAGAAAGCATCAGCCAGG+TGG | 0.699112 | 2.1:-55039862 | MS.gene073476:CDS |
AGCCAGCAAAGAAGTAACTG+AGG | 0.701696 | 2.1:-55039779 | MS.gene073476:CDS |
GCAATGAAAGGAGATACATG+TGG | 0.714311 | 2.1:-55042583 | MS.gene073476:CDS |
AATCTTCAAGATATCCATGG+TGG | 0.734776 | 2.1:+55043157 | None:intergenic |
AAGAAGTAACTGAGGCACGG+AGG | 0.735829 | 2.1:-55039771 | MS.gene073476:CDS |
GCTCAAATATGCAAACCCGG+TGG | 0.741563 | 2.1:+55043571 | None:intergenic |
AGGAGCAAGATACACGACTG+GGG | 0.750387 | 2.1:-55039342 | MS.gene073476:CDS |
ATATCTTGAAGATTCAACAG+TGG | 0.754206 | 2.1:-55043148 | MS.gene073476:intron |
AATGAACATGGACAAATGTG+CGG | 0.762296 | 2.1:-55043734 | MS.gene073476:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 55036275 | 55043894 | 55036275 | ID=MS.gene073476 |
chr2.1 | mRNA | 55036275 | 55043894 | 55036275 | ID=MS.gene073476.t1;Parent=MS.gene073476 |
chr2.1 | exon | 55043358 | 55043894 | 55043358 | ID=MS.gene073476.t1.exon1;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55043358 | 55043894 | 55043358 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55043149 | 55043265 | 55043149 | ID=MS.gene073476.t1.exon2;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55043149 | 55043265 | 55043149 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55042339 | 55042659 | 55042339 | ID=MS.gene073476.t1.exon3;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55042339 | 55042659 | 55042339 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55041921 | 55042238 | 55041921 | ID=MS.gene073476.t1.exon4;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55041921 | 55042238 | 55041921 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55041709 | 55041844 | 55041709 | ID=MS.gene073476.t1.exon5;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55041709 | 55041844 | 55041709 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55041535 | 55041674 | 55041535 | ID=MS.gene073476.t1.exon6;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55041535 | 55041674 | 55041535 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55041002 | 55041457 | 55041002 | ID=MS.gene073476.t1.exon7;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55041002 | 55041457 | 55041002 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55040375 | 55040864 | 55040375 | ID=MS.gene073476.t1.exon8;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55040375 | 55040864 | 55040375 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55040140 | 55040289 | 55040140 | ID=MS.gene073476.t1.exon9;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55040140 | 55040289 | 55040140 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55039483 | 55039907 | 55039483 | ID=MS.gene073476.t1.exon10;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55039483 | 55039907 | 55039483 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55039269 | 55039391 | 55039269 | ID=MS.gene073476.t1.exon11;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55039269 | 55039391 | 55039269 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55038560 | 55038640 | 55038560 | ID=MS.gene073476.t1.exon12;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55038560 | 55038640 | 55038560 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55037887 | 55037940 | 55037887 | ID=MS.gene073476.t1.exon13;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55037887 | 55037940 | 55037887 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
chr2.1 | exon | 55036275 | 55036343 | 55036275 | ID=MS.gene073476.t1.exon14;Parent=MS.gene073476.t1 |
chr2.1 | CDS | 55036275 | 55036343 | 55036275 | ID=cds.MS.gene073476.t1;Parent=MS.gene073476.t1 |
Gene Sequence |
Protein sequence |