Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07353.t1 | XP_003591325.1 | 97.5 | 1003 | 25 | 0 | 1 | 1003 | 1 | 1003 | 0.00E+00 | 1925.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07353.t1 | Q9SMX9 | 55.3 | 1006 | 310 | 27 | 6 | 1003 | 8 | 881 | 1.2e-279 | 964.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07353.t1 | G7IBS5 | 97.5 | 1003 | 25 | 0 | 1 | 1003 | 1 | 1003 | 0.0e+00 | 1925.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene07353.t1 | TF | SBP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050360 | MS.gene07353 | 0.996233 | 5.50E-225 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07353.t1 | MTR_1g086250 | 97.707 | 1003 | 23 | 0 | 1 | 1003 | 1 | 1003 | 0.0 | 2046 |
MS.gene07353.t1 | MTR_1g086250 | 98.148 | 810 | 15 | 0 | 194 | 1003 | 2 | 811 | 0.0 | 1657 |
MS.gene07353.t1 | MTR_7g110320 | 75.347 | 1010 | 225 | 10 | 8 | 1003 | 2 | 1001 | 0.0 | 1499 |
MS.gene07353.t1 | MTR_7g110320 | 75.058 | 866 | 192 | 10 | 8 | 859 | 2 | 857 | 0.0 | 1260 |
MS.gene07353.t1 | MTR_2g046550 | 49.033 | 1034 | 473 | 19 | 7 | 1002 | 7 | 1024 | 0.0 | 909 |
MS.gene07353.t1 | MTR_2g046550 | 47.475 | 792 | 381 | 12 | 243 | 1002 | 1 | 789 | 0.0 | 669 |
MS.gene07353.t1 | MTR_1g035010 | 32.997 | 594 | 364 | 10 | 417 | 1002 | 435 | 1002 | 1.44e-86 | 300 |
MS.gene07353.t1 | MTR_1g035010 | 50.303 | 165 | 73 | 4 | 115 | 273 | 74 | 235 | 4.46e-38 | 154 |
MS.gene07353.t1 | MTR_2g078770 | 62.376 | 101 | 38 | 0 | 132 | 232 | 43 | 143 | 8.85e-34 | 128 |
MS.gene07353.t1 | MTR_8g463140 | 67.033 | 91 | 30 | 0 | 146 | 236 | 64 | 154 | 3.74e-33 | 126 |
MS.gene07353.t1 | MTR_8g005960 | 56.522 | 115 | 41 | 2 | 116 | 221 | 147 | 261 | 1.55e-32 | 129 |
MS.gene07353.t1 | MTR_8g096780 | 58.511 | 94 | 39 | 0 | 133 | 226 | 85 | 178 | 3.23e-31 | 127 |
MS.gene07353.t1 | MTR_4g088555 | 62.921 | 89 | 33 | 0 | 133 | 221 | 49 | 137 | 1.02e-30 | 118 |
MS.gene07353.t1 | MTR_5g046670 | 61.798 | 89 | 34 | 0 | 132 | 220 | 229 | 317 | 2.77e-30 | 126 |
MS.gene07353.t1 | MTR_2g461920 | 64.773 | 88 | 31 | 0 | 133 | 220 | 157 | 244 | 3.00e-30 | 127 |
MS.gene07353.t1 | MTR_2g014200 | 63.043 | 92 | 33 | 1 | 133 | 224 | 51 | 141 | 3.01e-30 | 117 |
MS.gene07353.t1 | MTR_7g444860 | 58.511 | 94 | 39 | 0 | 137 | 230 | 139 | 232 | 4.65e-30 | 122 |
MS.gene07353.t1 | MTR_4g109770 | 64.773 | 88 | 28 | 1 | 133 | 220 | 112 | 196 | 4.20e-29 | 122 |
MS.gene07353.t1 | MTR_3g085180 | 56.842 | 95 | 41 | 0 | 132 | 226 | 150 | 244 | 1.09e-28 | 120 |
MS.gene07353.t1 | MTR_2g020620 | 25.797 | 345 | 223 | 9 | 430 | 751 | 247 | 581 | 1.51e-28 | 123 |
MS.gene07353.t1 | MTR_2g020620 | 52.308 | 65 | 31 | 0 | 156 | 220 | 99 | 163 | 2.46e-16 | 84.3 |
MS.gene07353.t1 | MTR_2g020620 | 25.797 | 345 | 223 | 9 | 430 | 751 | 143 | 477 | 2.97e-28 | 122 |
MS.gene07353.t1 | MTR_3g099080 | 50.435 | 115 | 54 | 2 | 133 | 244 | 83 | 197 | 3.18e-28 | 118 |
MS.gene07353.t1 | MTR_7g028740 | 61.364 | 88 | 33 | 1 | 133 | 220 | 64 | 150 | 3.77e-28 | 117 |
MS.gene07353.t1 | MTR_1g053715 | 65.432 | 81 | 28 | 0 | 140 | 220 | 67 | 147 | 5.56e-28 | 117 |
MS.gene07353.t1 | MTR_2g020620 | 25.857 | 321 | 209 | 8 | 450 | 751 | 3 | 313 | 1.35e-27 | 118 |
MS.gene07353.t1 | MTR_7g092930 | 68.919 | 74 | 23 | 0 | 147 | 220 | 68 | 141 | 2.22e-27 | 114 |
MS.gene07353.t1 | MTR_8g080690 | 54.255 | 94 | 43 | 0 | 132 | 225 | 136 | 229 | 8.47e-26 | 110 |
MS.gene07353.t1 | MTR_8g080680 | 56.250 | 80 | 35 | 0 | 147 | 226 | 132 | 211 | 3.38e-23 | 103 |
MS.gene07353.t1 | MTR_8g080670 | 58.108 | 74 | 31 | 0 | 146 | 219 | 161 | 234 | 2.83e-21 | 98.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07353.t1 | AT2G47070 | 56.604 | 1007 | 295 | 29 | 6 | 1003 | 8 | 881 | 0.0 | 995 |
MS.gene07353.t1 | AT3G60030 | 56.392 | 1009 | 327 | 28 | 16 | 1003 | 11 | 927 | 0.0 | 988 |
MS.gene07353.t1 | AT2G47070 | 58.383 | 841 | 253 | 21 | 171 | 1003 | 1 | 752 | 0.0 | 889 |
MS.gene07353.t1 | AT1G20980 | 32.419 | 583 | 358 | 15 | 427 | 1002 | 481 | 1034 | 6.49e-79 | 279 |
MS.gene07353.t1 | AT1G20980 | 41.393 | 244 | 94 | 7 | 26 | 260 | 38 | 241 | 1.20e-38 | 156 |
MS.gene07353.t1 | AT1G76580 | 30.690 | 580 | 356 | 12 | 429 | 1002 | 480 | 1019 | 1.94e-76 | 272 |
MS.gene07353.t1 | AT1G76580 | 39.655 | 232 | 81 | 7 | 30 | 252 | 40 | 221 | 1.80e-35 | 146 |
MS.gene07353.t1 | AT1G76580 | 39.655 | 232 | 81 | 7 | 30 | 252 | 40 | 221 | 3.70e-36 | 147 |
MS.gene07353.t1 | AT1G76580 | 36.239 | 218 | 131 | 4 | 429 | 644 | 480 | 691 | 3.81e-31 | 131 |
MS.gene07353.t1 | AT1G76580 | 39.655 | 232 | 81 | 7 | 30 | 252 | 40 | 221 | 3.95e-36 | 147 |
MS.gene07353.t1 | AT1G76580 | 35.909 | 220 | 133 | 4 | 429 | 646 | 480 | 693 | 1.05e-31 | 133 |
MS.gene07353.t1 | AT2G33810 | 61.798 | 89 | 34 | 0 | 134 | 222 | 41 | 129 | 3.09e-32 | 122 |
MS.gene07353.t1 | AT1G69170 | 65.909 | 88 | 30 | 0 | 133 | 220 | 110 | 197 | 6.01e-32 | 130 |
MS.gene07353.t1 | AT1G02065 | 69.620 | 79 | 24 | 0 | 147 | 225 | 188 | 266 | 2.97e-31 | 126 |
MS.gene07353.t1 | AT1G53160 | 60.606 | 99 | 33 | 2 | 134 | 226 | 35 | 133 | 6.51e-31 | 120 |
MS.gene07353.t1 | AT1G53160 | 60.606 | 99 | 33 | 2 | 134 | 226 | 35 | 133 | 6.51e-31 | 120 |
MS.gene07353.t1 | AT1G53160 | 60.606 | 99 | 33 | 2 | 134 | 226 | 35 | 133 | 8.21e-31 | 119 |
MS.gene07353.t1 | AT3G15270 | 58.163 | 98 | 38 | 1 | 136 | 230 | 49 | 146 | 3.05e-30 | 118 |
MS.gene07353.t1 | AT5G43270 | 56.701 | 97 | 42 | 0 | 147 | 243 | 169 | 265 | 6.68e-29 | 121 |
MS.gene07353.t1 | AT5G43270 | 56.701 | 97 | 42 | 0 | 147 | 243 | 169 | 265 | 6.68e-29 | 121 |
MS.gene07353.t1 | AT5G43270 | 56.701 | 97 | 42 | 0 | 147 | 243 | 169 | 265 | 6.68e-29 | 121 |
MS.gene07353.t1 | AT5G50670 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene07353.t1 | AT5G50670 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene07353.t1 | AT5G50570 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene07353.t1 | AT5G50570 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene07353.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 3.79e-28 | 117 |
MS.gene07353.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene07353.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene07353.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene07353.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene07353.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene07353.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene07353.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.55e-26 | 113 |
MS.gene07353.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.55e-26 | 113 |
MS.gene07353.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.55e-26 | 113 |
MS.gene07353.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.55e-26 | 113 |
MS.gene07353.t1 | AT3G57920 | 58.242 | 91 | 38 | 0 | 130 | 220 | 42 | 132 | 5.32e-26 | 111 |
MS.gene07353.t1 | AT5G18830 | 26.984 | 315 | 195 | 7 | 382 | 672 | 239 | 542 | 8.56e-26 | 115 |
MS.gene07353.t1 | AT5G18830 | 54.545 | 88 | 39 | 1 | 133 | 220 | 125 | 211 | 2.44e-22 | 103 |
MS.gene07353.t1 | AT5G18830 | 26.984 | 315 | 195 | 7 | 382 | 672 | 239 | 542 | 9.70e-26 | 114 |
MS.gene07353.t1 | AT5G18830 | 54.545 | 88 | 39 | 1 | 133 | 220 | 125 | 211 | 2.59e-22 | 103 |
MS.gene07353.t1 | AT5G18830 | 26.984 | 315 | 195 | 7 | 382 | 672 | 239 | 542 | 1.17e-25 | 114 |
MS.gene07353.t1 | AT5G18830 | 54.545 | 88 | 39 | 1 | 133 | 220 | 125 | 211 | 2.68e-22 | 103 |
MS.gene07353.t1 | AT2G42200 | 66.216 | 74 | 25 | 0 | 147 | 220 | 74 | 147 | 1.21e-25 | 110 |
MS.gene07353.t1 | AT1G02065 | 68.750 | 48 | 15 | 0 | 147 | 194 | 188 | 235 | 6.71e-16 | 79.0 |
Find 246 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCTCTTGTTCTCGTAAA+AGG | 0.174087 | 1.2:-64936844 | None:intergenic |
TGCAGTTCTACAAGAAATTT+TGG | 0.179030 | 1.2:-64940558 | None:intergenic |
GCAACAATTATAGCAAAATT+TGG | 0.200968 | 1.2:+64938538 | MS.gene07353:CDS |
TTTCCAGTCCCTTCAATATC+TGG | 0.226153 | 1.2:-64939360 | None:intergenic |
ACCAACAAGCGCCTTGTCTT+TGG | 0.258264 | 1.2:-64939733 | None:intergenic |
AGAACGGTTCACATGGCTTA+TGG | 0.294581 | 1.2:+64939500 | MS.gene07353:CDS |
AGATCTTGAGAAAGGGAATA+AGG | 0.299596 | 1.2:+64933648 | MS.gene07353:CDS |
GAAATCCATAGCTTGACTTT+TGG | 0.299906 | 1.2:-64939391 | None:intergenic |
GGGAATGGAATTTGAATGAT+TGG | 0.316466 | 1.2:+64933476 | MS.gene07353:CDS |
TATGGATTTCATTCATGAAA+TGG | 0.320879 | 1.2:+64939404 | MS.gene07353:CDS |
TTTATTCTCCAATGGTTCTC+AGG | 0.328039 | 1.2:+64936913 | MS.gene07353:CDS |
TTTGATGAAACTGTTAATAA+AGG | 0.328176 | 1.2:+64939579 | MS.gene07353:CDS |
ACAGAAGCCAATTGAAATAT+AGG | 0.336809 | 1.2:+64939439 | MS.gene07353:CDS |
ACCTTGTGGCAGGGCGCATC+AGG | 0.339254 | 1.2:-64938623 | None:intergenic |
GCACTTAGCTTAAATCTTGC+AGG | 0.340035 | 1.2:+64933733 | MS.gene07353:CDS |
CCAACAAGCGCCTTGTCTTT+GGG | 0.348507 | 1.2:-64939732 | None:intergenic |
TCATTTGTTGGACTTCCATT+AGG | 0.355984 | 1.2:-64935387 | None:intergenic |
AGTTTGTGAGATGCATTCTA+AGG | 0.361547 | 1.2:+64933891 | MS.gene07353:CDS |
CCCACTCCGGTCTGGGATCC+CGG | 0.362139 | 1.2:+64933579 | MS.gene07353:CDS |
CTCGGCCTGACGCAGATAAA+TGG | 0.364403 | 1.2:-64938149 | None:intergenic |
ATCTATTAACTCATCTTCTA+AGG | 0.366559 | 1.2:+64936774 | MS.gene07353:CDS |
AGCCATGTGAACCGTTCTAA+TGG | 0.369029 | 1.2:-64939495 | None:intergenic |
CAGACCTGCAATGCTCTCTA+TGG | 0.376267 | 1.2:+64940601 | MS.gene07353:CDS |
ATTGCTCTCTGTCGTATTGA+TGG | 0.383082 | 1.2:-64940444 | None:intergenic |
TAACCATCCTATATTTCAAT+TGG | 0.385181 | 1.2:-64939446 | None:intergenic |
CTAAGTGAATGTAAGTATAA+TGG | 0.386411 | 1.2:-64940367 | None:intergenic |
TTTGATGCCGGTACAGCAAT+TGG | 0.388018 | 1.2:-64938570 | None:intergenic |
GAGAAATAGCAAACAGTTAG+TGG | 0.388325 | 1.2:+64939662 | MS.gene07353:CDS |
TTCCAGTTTGATTAAGCTGC+TGG | 0.388701 | 1.2:+64938307 | MS.gene07353:CDS |
AGGTTAATGTGTGCTTTAGA+AGG | 0.390854 | 1.2:+64938800 | MS.gene07353:intron |
CGGAACATGTATAGAACTTC+GGG | 0.394622 | 1.2:-64940674 | None:intergenic |
ACCTTTCAGATGGGAATCAT+TGG | 0.397557 | 1.2:+64940697 | MS.gene07353:CDS |
AATCAAGAAGCTGTTCCTAA+TGG | 0.397811 | 1.2:+64935372 | MS.gene07353:CDS |
GCTTCTCCGCTAGAACTAGA+AGG | 0.400011 | 1.2:-64937301 | None:intergenic |
CTAGTCTGATCATCATTTGT+TGG | 0.400423 | 1.2:-64935399 | None:intergenic |
AGTACAAGAGGAAATTCATT+TGG | 0.402660 | 1.2:-64937956 | None:intergenic |
CAGGTACAGAACATGAAAAT+TGG | 0.403924 | 1.2:-64938898 | None:intergenic |
ATCCAGCAGCTTAATCAAAC+TGG | 0.406521 | 1.2:-64938309 | None:intergenic |
GCCACCATAGAGAGCATTGC+AGG | 0.412655 | 1.2:-64940605 | None:intergenic |
AGATGCATTCTAAGGCTAGT+AGG | 0.412881 | 1.2:+64933899 | MS.gene07353:CDS |
GAATCAAATGCAACAAGAAA+TGG | 0.413695 | 1.2:+64936976 | MS.gene07353:CDS |
ATGTCTCAGATGATACGTTT+TGG | 0.415679 | 1.2:+64938330 | MS.gene07353:CDS |
CTCTTGCTTCCGAGTAAGCC+GGG | 0.419245 | 1.2:-64937072 | None:intergenic |
TGCTTTAGAAGGAAAATATC+TGG | 0.420117 | 1.2:+64938811 | MS.gene07353:CDS |
TCATTCACTAGCTTAGAGAT+TGG | 0.421089 | 1.2:+64940488 | MS.gene07353:CDS |
ATGGATTTCATTCATGAAAT+GGG | 0.424476 | 1.2:+64939405 | MS.gene07353:CDS |
TCATCTGATTTGAGTGGGAT+GGG | 0.427804 | 1.2:+64933442 | MS.gene07353:CDS |
TTCATCTGATTTGAGTGGGA+TGG | 0.429528 | 1.2:+64933441 | MS.gene07353:CDS |
CAAGAGAATTTGTTGAGAGA+AGG | 0.430841 | 1.2:+64936857 | MS.gene07353:CDS |
TTTGACCATTTATCTGCGTC+AGG | 0.436128 | 1.2:+64938144 | MS.gene07353:CDS |
CCTGATGCTGTTGGTCCTGC+CGG | 0.436534 | 1.2:+64939783 | MS.gene07353:CDS |
AAGAGAATTTGTTGAGAGAA+GGG | 0.437952 | 1.2:+64936858 | MS.gene07353:CDS |
AGATGGTTCCGAGGATGTAC+TGG | 0.438143 | 1.2:+64939836 | MS.gene07353:CDS |
CGCTAGAACTAGAAGGGGAC+TGG | 0.439772 | 1.2:-64937294 | None:intergenic |
CGGTCTGGGATCCCGGTGGT+TGG | 0.446088 | 1.2:+64933586 | MS.gene07353:CDS |
CCCAAAGACAAGGCGCTTGT+TGG | 0.448364 | 1.2:+64939732 | MS.gene07353:CDS |
AGCTGTCGAAGACGCTTGGC+TGG | 0.450145 | 1.2:+64935324 | MS.gene07353:CDS |
TCAATTGGCAGATTCTAGAT+TGG | 0.452129 | 1.2:+64938068 | MS.gene07353:intron |
AGATGGGAATCATTGGAGTT+CGG | 0.452671 | 1.2:+64940704 | MS.gene07353:CDS |
TTCGAATCGAGCTGTCTGTC+AGG | 0.452984 | 1.2:+64933813 | MS.gene07353:CDS |
TCTGAATTTCCACTTGTTTG+AGG | 0.453259 | 1.2:-64937259 | None:intergenic |
GTGGGATGGGGAGGAGGTCA+AGG | 0.453462 | 1.2:+64933455 | MS.gene07353:CDS |
TATAGCTAGCCGTGTGAATC+CGG | 0.453788 | 1.2:+64933519 | MS.gene07353:CDS |
CGCAAACTCTCCGCCTGCAC+CGG | 0.454733 | 1.2:-64933538 | None:intergenic |
CATTTATCTGCGTCAGGCCG+AGG | 0.455554 | 1.2:+64938150 | MS.gene07353:CDS |
GTCAGATCAGCCTACAGATC+AGG | 0.456789 | 1.2:+64936751 | MS.gene07353:CDS |
TCTGGGATCCCGGTGGTTGG+AGG | 0.462646 | 1.2:+64933589 | MS.gene07353:CDS |
TTTCCGTCCCTTTCCACAGC+CGG | 0.462810 | 1.2:-64933766 | None:intergenic |
CATCTGATTTGAGTGGGATG+GGG | 0.463932 | 1.2:+64933443 | MS.gene07353:CDS |
TTATTCTCCAATGGTTCTCA+GGG | 0.464671 | 1.2:+64936914 | MS.gene07353:CDS |
TTGCTCTCTGTCGTATTGAT+GGG | 0.466728 | 1.2:-64940443 | None:intergenic |
AGGATGGTTAACTTGAACTC+TGG | 0.466960 | 1.2:+64939459 | MS.gene07353:CDS |
ATAAGGAAGGGGATAGGAAA+AGG | 0.467611 | 1.2:+64933665 | MS.gene07353:CDS |
AAGGGAATAAGGAAGGGGAT+AGG | 0.469713 | 1.2:+64933659 | MS.gene07353:CDS |
TCTCTTGCTTCCGAGTAAGC+CGG | 0.470159 | 1.2:-64937073 | None:intergenic |
CCGGCAGGACCAACAGCATC+AGG | 0.471054 | 1.2:-64939783 | None:intergenic |
ATTTGAGTGGGATGGGGAGG+AGG | 0.473356 | 1.2:+64933449 | MS.gene07353:CDS |
CTTGAGAAAGGGAATAAGGA+AGG | 0.476247 | 1.2:+64933652 | MS.gene07353:CDS |
TTGATTACAGGTGGGAATTG+AGG | 0.477112 | 1.2:+64940283 | MS.gene07353:intron |
TCCTCTTGTACTTAGAGCAC+AGG | 0.478174 | 1.2:+64937967 | MS.gene07353:CDS |
TGGGGAGGAGGTCAAGGGAA+TGG | 0.478218 | 1.2:+64933461 | MS.gene07353:CDS |
AACAGAGATTACCTTGTGGC+AGG | 0.479919 | 1.2:-64938633 | None:intergenic |
TGCGTCAGGCCGAGGCTGTG+TGG | 0.480436 | 1.2:+64938158 | MS.gene07353:CDS |
AACTGCAGTAGGAAGGTCTA+TGG | 0.480847 | 1.2:+64940574 | MS.gene07353:CDS |
TCCTCTTCTGCCACTATGAA+AGG | 0.481801 | 1.2:-64939282 | None:intergenic |
TTAAATTAACTATAGCTGAC+AGG | 0.483176 | 1.2:+64936729 | MS.gene07353:intron |
CATATAGCAGCGGGAAAAGA+TGG | 0.484670 | 1.2:+64939819 | MS.gene07353:CDS |
TATCAGAGTGCAACATCAAA+TGG | 0.485125 | 1.2:+64938370 | MS.gene07353:CDS |
AAAGACAAGGCGCTTGTTGG+TGG | 0.485410 | 1.2:+64939735 | MS.gene07353:CDS |
AGGACATGTTTCACCGGCTG+TGG | 0.490256 | 1.2:+64933753 | MS.gene07353:CDS |
CTAGCTCTGTTGACTACCCT+TGG | 0.491004 | 1.2:+64937206 | MS.gene07353:CDS |
TGTTTCACCGGCTGTGGAAA+GGG | 0.493285 | 1.2:+64933759 | MS.gene07353:CDS |
TAAGGCTAGTAGGGCTCTTG+TGG | 0.497571 | 1.2:+64933909 | MS.gene07353:CDS |
TGTTAGTCCAATTGCTGTAC+CGG | 0.498218 | 1.2:+64938563 | MS.gene07353:CDS |
GGAATTTGAATGATTGGAGA+TGG | 0.498797 | 1.2:+64933482 | MS.gene07353:CDS |
CACAAAGTTTACAGTTCCCT+CGG | 0.498820 | 1.2:-64940532 | None:intergenic |
GAAAGTGCTTGATACAATGT+AGG | 0.501114 | 1.2:-64939609 | None:intergenic |
GATTTGCTAGATTGAGGACC+AGG | 0.501170 | 1.2:+64939239 | MS.gene07353:intron |
GTATCAGCTTTATTCTCCAA+TGG | 0.501723 | 1.2:+64936905 | MS.gene07353:CDS |
TGGAGACCCCTGAGAACCAT+TGG | 0.509467 | 1.2:-64936921 | None:intergenic |
TAACAGTTTCATCAAAGAGT+AGG | 0.509576 | 1.2:-64939572 | None:intergenic |
TCCTTTCATAGTGGCAGAAG+AGG | 0.510150 | 1.2:+64939281 | MS.gene07353:CDS |
GAGAAGCTGTCGAAGACGCT+TGG | 0.511016 | 1.2:+64935320 | MS.gene07353:CDS |
TATCAAGCACTTTCAGAGAT+GGG | 0.511356 | 1.2:+64939618 | MS.gene07353:CDS |
CTCAATATCAGTAGGACTGT+GGG | 0.513581 | 1.2:-64938095 | None:intergenic |
GAGGAAGGAGATCTTGAGAA+AGG | 0.514583 | 1.2:+64933640 | MS.gene07353:CDS |
GTGGTTCATCTGATTTGAGT+GGG | 0.514851 | 1.2:+64933437 | MS.gene07353:CDS |
GGAGCATGAAGAAGACGTAT+TGG | 0.515867 | 1.2:-64933617 | None:intergenic |
AGTTCATCAGATGTATTGTC+AGG | 0.517811 | 1.2:-64939705 | None:intergenic |
TAGCCGTGTGAATCCGGTGC+AGG | 0.517976 | 1.2:+64933525 | MS.gene07353:CDS |
GCGTCAGGCCGAGGCTGTGT+GGG | 0.518427 | 1.2:+64938159 | MS.gene07353:CDS |
TAAAGCCAAAAGTCAAGCTA+TGG | 0.519399 | 1.2:+64939386 | MS.gene07353:CDS |
TATATGAAGTGGTGTCAAAC+CGG | 0.519627 | 1.2:-64939802 | None:intergenic |
TCACCACTGCACACCAATCA+TGG | 0.519744 | 1.2:-64939536 | None:intergenic |
TAGTTCTAGCGGAGAAGCCC+AGG | 0.520957 | 1.2:+64937306 | MS.gene07353:CDS |
ATGTTTCACCGGCTGTGGAA+AGG | 0.521156 | 1.2:+64933758 | MS.gene07353:CDS |
TTTCTCAAGATCTCCTTCCT+CGG | 0.522636 | 1.2:-64933638 | None:intergenic |
GAAACTGATCCAGATATTGA+AGG | 0.522834 | 1.2:+64939351 | MS.gene07353:CDS |
TTGGAGTTCGGAACAAGCTA+AGG | 0.522976 | 1.2:+64940716 | MS.gene07353:CDS |
GTATCAAGCACTTTCAGAGA+TGG | 0.523556 | 1.2:+64939617 | MS.gene07353:CDS |
TCGGAACATGTATAGAACTT+CGG | 0.525195 | 1.2:-64940675 | None:intergenic |
CAACCACCGGGATCCCAGAC+CGG | 0.527167 | 1.2:-64933585 | None:intergenic |
AAGAATGCCCGTGACAGTAC+AGG | 0.527708 | 1.2:+64940311 | MS.gene07353:CDS |
AGAGAATTTGTTGAGAGAAG+GGG | 0.527845 | 1.2:+64936859 | MS.gene07353:CDS |
GTTTCACTTGATTCTAGTAG+AGG | 0.528154 | 1.2:-64939333 | None:intergenic |
ATTTCTTGTAGAACTGCAGT+AGG | 0.528560 | 1.2:+64940563 | MS.gene07353:CDS |
GAAAAGGAGAGTTATTGTGC+TGG | 0.529228 | 1.2:+64933681 | MS.gene07353:CDS |
GTGTGGAGCCTGTACTGTCA+CGG | 0.530352 | 1.2:-64940319 | None:intergenic |
ACATGTTCCGACCTTTCAGA+TGG | 0.530501 | 1.2:+64940687 | MS.gene07353:CDS |
CCGGGATCCCAGACCGGAGT+GGG | 0.530624 | 1.2:-64933579 | None:intergenic |
TGATGTTGTGTTATAACAGT+TGG | 0.532386 | 1.2:-64936941 | None:intergenic |
GCTTGGCTGGCCATAACAAA+CGG | 0.533402 | 1.2:+64935337 | MS.gene07353:CDS |
ACCTGTGCTCTAAGTACAAG+AGG | 0.533970 | 1.2:-64937968 | None:intergenic |
ATTTCATTCATGAAATGGGC+TGG | 0.535051 | 1.2:+64939409 | MS.gene07353:CDS |
GTCTTCTTCACAGAGCTGTA+AGG | 0.535241 | 1.2:+64939640 | MS.gene07353:CDS |
GAATTTGAATGATTGGAGAT+GGG | 0.536595 | 1.2:+64933483 | MS.gene07353:CDS |
TTTCCCGCTGCTATATGAAG+TGG | 0.537198 | 1.2:-64939813 | None:intergenic |
GATCCAGATATTGAAGGGAC+TGG | 0.538378 | 1.2:+64939357 | MS.gene07353:CDS |
GTTATTGTGCTGGAAGATGA+TGG | 0.539294 | 1.2:+64933691 | MS.gene07353:CDS |
TGTTCTGTACCTGTGACAAA+TGG | 0.539622 | 1.2:+64938908 | MS.gene07353:CDS |
TAGATCTCTTTCCATTAGAA+CGG | 0.540024 | 1.2:+64939484 | MS.gene07353:CDS |
CTGATTTGAGTGGGATGGGG+AGG | 0.540249 | 1.2:+64933446 | MS.gene07353:CDS |
GGGGTTCTTCAAGAAATTCA+GGG | 0.541114 | 1.2:+64936879 | MS.gene07353:CDS |
GAATTTCCACTTGTTTGAGG+TGG | 0.542056 | 1.2:-64937256 | None:intergenic |
TTGTTTAGACCTGATGCTGT+TGG | 0.542526 | 1.2:+64939774 | MS.gene07353:CDS |
CGTAATCGCGCATAATCCTC+AGG | 0.544188 | 1.2:-64940341 | None:intergenic |
ATATATGTTGACTCAGATGA+TGG | 0.545000 | 1.2:+64937139 | MS.gene07353:CDS |
AGGAAGGAGATCTTGAGAAA+GGG | 0.547901 | 1.2:+64933641 | MS.gene07353:CDS |
GTAGCAAGATTTGTAGAGAC+GGG | 0.551066 | 1.2:-64937184 | None:intergenic |
TTGGACGAACCTCCAACCAC+CGG | 0.551797 | 1.2:-64933598 | None:intergenic |
CTTCTCCGCTAGAACTAGAA+GGG | 0.552259 | 1.2:-64937300 | None:intergenic |
TGAGAAAGGGAATAAGGAAG+GGG | 0.552930 | 1.2:+64933654 | MS.gene07353:CDS |
AATCCTCTTCCATTTGTCAC+AGG | 0.553594 | 1.2:-64938917 | None:intergenic |
ACACCACTTCATATAGCAGC+GGG | 0.553941 | 1.2:+64939810 | MS.gene07353:CDS |
GATGCATTCTAAGGCTAGTA+GGG | 0.556125 | 1.2:+64933900 | MS.gene07353:CDS |
AATTGAGCTCTCTTTGATGC+CGG | 0.556172 | 1.2:-64938582 | None:intergenic |
GTTAATAGATCCTGATCTGT+AGG | 0.556745 | 1.2:-64936761 | None:intergenic |
TGGGATGGGGAGGAGGTCAA+GGG | 0.558672 | 1.2:+64933456 | MS.gene07353:CDS |
TCTTCTTCATGCTCCGAGGA+AGG | 0.558761 | 1.2:+64933625 | MS.gene07353:CDS |
AGTAGCAAGATTTGTAGAGA+CGG | 0.559291 | 1.2:-64937185 | None:intergenic |
TTGAATGATTGGAGATGGGA+TGG | 0.559506 | 1.2:+64933487 | MS.gene07353:CDS |
CTGAAGTTCATCAAGCTCCT+CGG | 0.559955 | 1.2:-64938870 | None:intergenic |
AAGGCTAGTAGGGCTCTTGT+GGG | 0.562216 | 1.2:+64933910 | MS.gene07353:CDS |
ACCTGATGCGCCCTGCCACA+AGG | 0.562538 | 1.2:+64938622 | MS.gene07353:CDS |
ATACTTCAAGAGTTCGATGA+AGG | 0.564195 | 1.2:+64935294 | MS.gene07353:CDS |
CTTGTAGAACTGCAGTAGGA+AGG | 0.568836 | 1.2:+64940567 | MS.gene07353:CDS |
CAGCTTCTTTCCTTTCATAG+TGG | 0.569410 | 1.2:+64939272 | MS.gene07353:CDS |
TTCCATTAGAACGGTTCACA+TGG | 0.572870 | 1.2:+64939493 | MS.gene07353:CDS |
TGAAGTGGTGTCAAACCGGC+AGG | 0.572947 | 1.2:-64939798 | None:intergenic |
CAGCATTTCAAACAGTCCCC+CGG | 0.574192 | 1.2:+64937054 | MS.gene07353:CDS |
GAGAATTTGTTGAGAGAAGG+GGG | 0.576069 | 1.2:+64936860 | MS.gene07353:CDS |
TCAGGCCGAGGCTGTGTGGG+AGG | 0.577431 | 1.2:+64938162 | MS.gene07353:CDS |
CCGTGTGAATCCGGTGCAGG+CGG | 0.578551 | 1.2:+64933528 | MS.gene07353:CDS |
TGTGGAGCCTGTACTGTCAC+GGG | 0.578816 | 1.2:-64940318 | None:intergenic |
AGAAGCTGCTACTCAAACCC+TGG | 0.580967 | 1.2:-64939257 | None:intergenic |
ATGTAGCTCTCAATATCAGT+AGG | 0.583286 | 1.2:-64938103 | None:intergenic |
TGCAGATCTGAGTAGAGGTA+AGG | 0.583887 | 1.2:+64933849 | MS.gene07353:CDS |
CTATAATTGTTGCTTCGGAA+AGG | 0.584009 | 1.2:-64938528 | None:intergenic |
TCTTGCTTCCGAGTAAGCCG+GGG | 0.584021 | 1.2:-64937071 | None:intergenic |
TTGAGAAAGGGAATAAGGAA+GGG | 0.585696 | 1.2:+64933653 | MS.gene07353:CDS |
TCAAGTCCACCTCAAACAAG+TGG | 0.586688 | 1.2:+64937250 | MS.gene07353:CDS |
GGTGGTTCATCTGATTTGAG+TGG | 0.587139 | 1.2:+64933436 | MS.gene07353:CDS |
ACAGAGATTACCTTGTGGCA+GGG | 0.588689 | 1.2:-64938632 | None:intergenic |
CAGAGCATCCAGTACATCCT+CGG | 0.589070 | 1.2:-64939844 | None:intergenic |
ACAAACACAGACCGCTGCTA+TGG | 0.592403 | 1.2:-64940627 | None:intergenic |
CTCTATGGTGGCCATAGCAG+CGG | 0.592561 | 1.2:+64940616 | MS.gene07353:CDS |
GTACCTGTGACAAATGGAAG+AGG | 0.592712 | 1.2:+64938914 | MS.gene07353:CDS |
ATGATTCCCATCTGAAAGGT+CGG | 0.593018 | 1.2:-64940694 | None:intergenic |
AGATATGAGTTGATGATCAG+AGG | 0.595345 | 1.2:-64937020 | None:intergenic |
AAGCCAATTGAAATATAGGA+TGG | 0.596851 | 1.2:+64939443 | MS.gene07353:CDS |
TCCAATGATTCCCATCTGAA+AGG | 0.600424 | 1.2:-64940698 | None:intergenic |
TCTTGCAGGACATGTTTCAC+CGG | 0.602620 | 1.2:+64933747 | MS.gene07353:CDS |
GCTAGAACTAGAAGGGGACT+GGG | 0.602647 | 1.2:-64937293 | None:intergenic |
TGAGAATCTTGTTGTGTCCA+AGG | 0.603103 | 1.2:-64937223 | None:intergenic |
ATTGAGAGCTACATACGCCC+TGG | 0.604603 | 1.2:+64938112 | MS.gene07353:CDS |
AAATGGAAGAGGATTTATTG+AGG | 0.605184 | 1.2:+64938925 | MS.gene07353:CDS |
CATGTTCCGACCTTTCAGAT+GGG | 0.605353 | 1.2:+64940688 | MS.gene07353:CDS |
TGGACGAACCTCCAACCACC+GGG | 0.606579 | 1.2:-64933597 | None:intergenic |
AACACAAGGAGCAGCTCATG+TGG | 0.607987 | 1.2:+64940409 | MS.gene07353:CDS |
TTCTTCAAGAAATTCAGGGA+TGG | 0.609933 | 1.2:+64936883 | MS.gene07353:CDS |
AAACTGATCCAGATATTGAA+GGG | 0.611495 | 1.2:+64939352 | MS.gene07353:CDS |
CAGTCCCCTTCTAGTTCTAG+CGG | 0.612309 | 1.2:+64937295 | MS.gene07353:CDS |
TACTTCCTCCCACACAGCCT+CGG | 0.612916 | 1.2:-64938167 | None:intergenic |
TGAAGATGCTCATGAGTCAA+CGG | 0.614117 | 1.2:+64938838 | MS.gene07353:CDS |
GAGGATTATGCGCGATTACG+TGG | 0.614195 | 1.2:+64940344 | MS.gene07353:CDS |
GTCTGTCAGGTTGAAGACTG+TGG | 0.617577 | 1.2:+64933826 | MS.gene07353:CDS |
CTGGCCATAACAAACGGAGA+AGG | 0.618872 | 1.2:+64935343 | MS.gene07353:CDS |
TCACCGGCTGTGGAAAGGGA+CGG | 0.619862 | 1.2:+64933763 | MS.gene07353:CDS |
GACAATACATCTGATGAACT+AGG | 0.621300 | 1.2:+64939708 | MS.gene07353:CDS |
CAGGCGGAGAGTTTGCGAGT+GGG | 0.622495 | 1.2:+64933544 | MS.gene07353:CDS |
TACAGGTGGGAATTGAGGCA+TGG | 0.622502 | 1.2:+64940288 | MS.gene07353:intron |
CCGCCTGCACCGGATTCACA+CGG | 0.624536 | 1.2:-64933528 | None:intergenic |
GCAGGCGGAGAGTTTGCGAG+TGG | 0.624882 | 1.2:+64933543 | MS.gene07353:CDS |
TCTCAATATCAGTAGGACTG+TGG | 0.625316 | 1.2:-64938096 | None:intergenic |
GCAAGTCAGAATGATGAACA+AGG | 0.626908 | 1.2:+64936803 | MS.gene07353:CDS |
ACCTGCAATGCTCTCTATGG+TGG | 0.630335 | 1.2:+64940604 | MS.gene07353:CDS |
TTGTGGGAAATGCAATGCAG+AGG | 0.630557 | 1.2:+64933926 | MS.gene07353:CDS |
GCTGAAGTAAGACGTAGCCG+AGG | 0.633383 | 1.2:+64940515 | MS.gene07353:CDS |
ATGGTCAAAACAATACAACC+AGG | 0.638951 | 1.2:-64938130 | None:intergenic |
GACACCACTTCATATAGCAG+CGG | 0.639223 | 1.2:+64939809 | MS.gene07353:CDS |
TGTTGACTCAGATGATGGAA+CGG | 0.641750 | 1.2:+64937144 | MS.gene07353:CDS |
TCTGACTAATGATCCTTGCA+TGG | 0.643398 | 1.2:+64939863 | MS.gene07353:CDS |
GATGGTTTGAATGATGAAGC+TGG | 0.645206 | 1.2:+64933709 | MS.gene07353:CDS |
TATTCTCCAATGGTTCTCAG+GGG | 0.647451 | 1.2:+64936915 | MS.gene07353:CDS |
TTCTCCGCTAGAACTAGAAG+GGG | 0.647976 | 1.2:-64937299 | None:intergenic |
TCGCGCATAATCCTCAGGTG+TGG | 0.653531 | 1.2:-64940336 | None:intergenic |
AGCAGCGGTCTGTGTTTGTG+TGG | 0.653598 | 1.2:+64940631 | MS.gene07353:CDS |
CTAGTAGAGGTTCAAGCACG+CGG | 0.656034 | 1.2:-64939320 | None:intergenic |
ATTTGCTAGATTGAGGACCA+GGG | 0.658771 | 1.2:+64939240 | MS.gene07353:intron |
AAAGTGCTTGATACAATGTA+GGG | 0.660121 | 1.2:-64939608 | None:intergenic |
CTGAAGTAAGACGTAGCCGA+GGG | 0.663241 | 1.2:+64940516 | MS.gene07353:CDS |
TGAACTAGGACCCAAAGACA+AGG | 0.663671 | 1.2:+64939722 | MS.gene07353:CDS |
AGCGGGAAAAGATGGTTCCG+AGG | 0.663787 | 1.2:+64939827 | MS.gene07353:CDS |
TACGTCTTCTTCATGCTCCG+AGG | 0.664152 | 1.2:+64933621 | MS.gene07353:CDS |
ACCGGGATCCCAGACCGGAG+TGG | 0.666079 | 1.2:-64933580 | None:intergenic |
TGTGGTGCAGATCTGAGTAG+AGG | 0.668323 | 1.2:+64933844 | MS.gene07353:CDS |
CAGTACAGGCTCCACACCTG+AGG | 0.669316 | 1.2:+64940325 | MS.gene07353:CDS |
ACAAGGAGCAGCTCATGTGG+TGG | 0.675515 | 1.2:+64940412 | MS.gene07353:CDS |
GAGAATCTTGTTGTGTCCAA+GGG | 0.677067 | 1.2:-64937222 | None:intergenic |
CAAGTCAGAATGATGAACAA+GGG | 0.681362 | 1.2:+64936804 | MS.gene07353:CDS |
ACTCCGGTCTGGGATCCCGG+TGG | 0.685385 | 1.2:+64933582 | MS.gene07353:CDS |
TGGTCAAAACAATACAACCA+GGG | 0.689970 | 1.2:-64938129 | None:intergenic |
GGACCATGATTGGTGTGCAG+TGG | 0.690358 | 1.2:+64939533 | MS.gene07353:CDS |
CTTGCTTCCGAGTAAGCCGG+GGG | 0.690508 | 1.2:-64937070 | None:intergenic |
TCGGAAGCAAGAGATAGCAG+TGG | 0.695304 | 1.2:+64937082 | MS.gene07353:CDS |
GTCAACGGATCAATACTCCG+AGG | 0.781576 | 1.2:+64938853 | MS.gene07353:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 64933391 | 64940736 | 64933391 | ID=MS.gene07353 |
chr1.2 | mRNA | 64933391 | 64940736 | 64933391 | ID=MS.gene07353.t1;Parent=MS.gene07353 |
chr1.2 | exon | 64933391 | 64933968 | 64933391 | ID=MS.gene07353.t1.exon1;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64933391 | 64933968 | 64933391 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64935287 | 64935468 | 64935287 | ID=MS.gene07353.t1.exon2;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64935287 | 64935468 | 64935287 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64936744 | 64937327 | 64936744 | ID=MS.gene07353.t1.exon3;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64936744 | 64937327 | 64936744 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64937914 | 64937988 | 64937914 | ID=MS.gene07353.t1.exon4;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64937914 | 64937988 | 64937914 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64938079 | 64938186 | 64938079 | ID=MS.gene07353.t1.exon5;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64938079 | 64938186 | 64938079 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64938290 | 64938407 | 64938290 | ID=MS.gene07353.t1.exon6;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64938290 | 64938407 | 64938290 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64938502 | 64938643 | 64938502 | ID=MS.gene07353.t1.exon7;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64938502 | 64938643 | 64938502 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64938802 | 64938946 | 64938802 | ID=MS.gene07353.t1.exon8;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64938802 | 64938946 | 64938802 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64939249 | 64939884 | 64939249 | ID=MS.gene07353.t1.exon9;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64939249 | 64939884 | 64939249 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
chr1.2 | exon | 64940293 | 64940736 | 64940293 | ID=MS.gene07353.t1.exon10;Parent=MS.gene07353.t1 |
chr1.2 | CDS | 64940293 | 64940736 | 64940293 | ID=cds.MS.gene07353.t1;Parent=MS.gene07353.t1 |
Gene Sequence |
Protein sequence |