Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073779.t1 | XP_013468234.1 | 93.9 | 426 | 26 | 0 | 2 | 427 | 94 | 519 | 1.50E-219 | 771.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073779.t1 | F4KF65 | 68.5 | 426 | 134 | 0 | 2 | 427 | 94 | 519 | 2.0e-164 | 580.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073779.t1 | A0A072VKX7 | 93.9 | 426 | 26 | 0 | 2 | 427 | 94 | 519 | 1.1e-219 | 771.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057693 | MS.gene073779 | 0.808158 | 3.55E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073779.t1 | MTR_1g066760 | 98.357 | 426 | 7 | 0 | 2 | 427 | 94 | 519 | 0.0 | 853 |
| MS.gene073779.t1 | MTR_2g034900 | 31.555 | 431 | 259 | 10 | 7 | 422 | 89 | 498 | 1.07e-56 | 195 |
| MS.gene073779.t1 | MTR_7g112350 | 31.690 | 426 | 257 | 12 | 11 | 422 | 94 | 499 | 9.70e-55 | 190 |
| MS.gene073779.t1 | MTR_4g121435 | 31.754 | 422 | 255 | 12 | 15 | 422 | 100 | 502 | 2.33e-54 | 189 |
| MS.gene073779.t1 | MTR_4g131510 | 30.698 | 430 | 264 | 10 | 7 | 422 | 12 | 421 | 2.63e-54 | 186 |
| MS.gene073779.t1 | MTR_1g083810 | 31.368 | 424 | 255 | 11 | 14 | 422 | 97 | 499 | 8.29e-53 | 185 |
| MS.gene073779.t1 | MTR_4g131000 | 29.724 | 471 | 249 | 13 | 7 | 422 | 12 | 455 | 1.49e-43 | 159 |
| MS.gene073779.t1 | MTR_8g027585 | 29.854 | 412 | 255 | 10 | 27 | 424 | 25 | 416 | 1.64e-42 | 155 |
| MS.gene073779.t1 | MTR_4g133030 | 28.140 | 430 | 276 | 10 | 7 | 422 | 9 | 419 | 2.39e-41 | 153 |
| MS.gene073779.t1 | MTR_4g133040 | 27.739 | 429 | 276 | 10 | 7 | 421 | 23 | 431 | 4.91e-40 | 149 |
| MS.gene073779.t1 | MTR_4g132980 | 28.306 | 431 | 244 | 11 | 7 | 422 | 12 | 392 | 7.31e-37 | 140 |
| MS.gene073779.t1 | MTR_7g112150 | 27.739 | 429 | 271 | 13 | 11 | 422 | 110 | 516 | 1.62e-35 | 137 |
| MS.gene073779.t1 | MTR_7g113400 | 30.625 | 320 | 200 | 9 | 11 | 322 | 110 | 415 | 1.64e-27 | 114 |
| MS.gene073779.t1 | MTR_7g112160 | 27.446 | 419 | 267 | 13 | 11 | 422 | 110 | 498 | 3.53e-27 | 114 |
| MS.gene073779.t1 | MTR_1g053470 | 27.393 | 303 | 187 | 10 | 131 | 419 | 9 | 292 | 1.33e-23 | 100 |
| MS.gene073779.t1 | MTR_1g053470 | 27.393 | 303 | 187 | 10 | 131 | 419 | 9 | 292 | 1.50e-23 | 100 |
| MS.gene073779.t1 | MTR_1g053470 | 27.393 | 303 | 187 | 10 | 131 | 419 | 9 | 292 | 4.92e-23 | 100 |
| MS.gene073779.t1 | MTR_4g127570 | 22.850 | 407 | 226 | 8 | 26 | 422 | 21 | 349 | 1.40e-20 | 94.0 |
| MS.gene073779.t1 | MTR_4g132980 | 24.415 | 299 | 179 | 8 | 135 | 422 | 2 | 264 | 1.93e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073779.t1 | AT5G03070 | 74.178 | 426 | 110 | 0 | 2 | 427 | 94 | 519 | 0.0 | 646 |
| MS.gene073779.t1 | AT3G06720 | 31.604 | 424 | 254 | 11 | 14 | 422 | 95 | 497 | 2.69e-54 | 189 |
| MS.gene073779.t1 | AT3G06720 | 31.604 | 424 | 254 | 11 | 14 | 422 | 95 | 497 | 2.69e-54 | 189 |
| MS.gene073779.t1 | AT1G02690 | 31.455 | 426 | 258 | 11 | 11 | 422 | 96 | 501 | 2.77e-54 | 189 |
| MS.gene073779.t1 | AT1G09270 | 31.002 | 429 | 260 | 13 | 6 | 419 | 12 | 419 | 3.21e-54 | 187 |
| MS.gene073779.t1 | AT1G02690 | 31.455 | 426 | 259 | 11 | 11 | 422 | 96 | 502 | 3.54e-54 | 189 |
| MS.gene073779.t1 | AT4G02150 | 30.476 | 420 | 256 | 10 | 15 | 419 | 99 | 497 | 1.89e-53 | 187 |
| MS.gene073779.t1 | AT4G16143 | 30.986 | 426 | 260 | 11 | 11 | 422 | 97 | 502 | 2.08e-53 | 187 |
| MS.gene073779.t1 | AT4G16143 | 30.986 | 426 | 260 | 11 | 11 | 422 | 97 | 502 | 2.08e-53 | 187 |
| MS.gene073779.t1 | AT1G09270 | 31.002 | 429 | 260 | 13 | 6 | 419 | 94 | 501 | 2.40e-53 | 186 |
| MS.gene073779.t1 | AT1G09270 | 31.002 | 429 | 260 | 13 | 6 | 419 | 94 | 501 | 2.40e-53 | 186 |
| MS.gene073779.t1 | AT5G49310 | 29.398 | 415 | 262 | 11 | 15 | 418 | 94 | 488 | 1.61e-48 | 173 |
| MS.gene073779.t1 | AT4G02150 | 34.727 | 311 | 188 | 7 | 15 | 321 | 99 | 398 | 3.26e-46 | 164 |
| MS.gene073779.t1 | AT3G05720 | 28.767 | 438 | 260 | 15 | 9 | 419 | 77 | 489 | 3.60e-43 | 159 |
| MS.gene073779.t1 | AT3G05720 | 28.767 | 438 | 260 | 15 | 9 | 419 | 77 | 489 | 3.60e-43 | 159 |
| MS.gene073779.t1 | AT5G52000 | 26.005 | 423 | 275 | 12 | 8 | 419 | 26 | 421 | 2.64e-30 | 122 |
Find 97 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTAGTTGACAAGTATTT+TGG | 0.155387 | 1.1:-49209538 | MS.gene073779:CDS |
| AAGGAAGTTGCTTACATATT+AGG | 0.201164 | 1.1:-49209991 | MS.gene073779:CDS |
| CTGGTTTCACTTGTTGAAAA+AGG | 0.257592 | 1.1:-49209910 | MS.gene073779:CDS |
| TCTTCTTGTTCTACAAGCTT+TGG | 0.289124 | 1.1:+49209625 | None:intergenic |
| CTTCTTGTTCTACAAGCTTT+GGG | 0.294666 | 1.1:+49209626 | None:intergenic |
| TTAAATAGCTTTACCTTCAT+TGG | 0.301449 | 1.1:+49213439 | None:intergenic |
| CTTTGCTTATTGCTCACCTT+GGG | 0.308315 | 1.1:-49212687 | MS.gene073779:CDS |
| ATAAGTTCGTTAGCAGCTTT+AGG | 0.319153 | 1.1:+49211937 | None:intergenic |
| CTAGTTCAGTGTCTTTCATT+TGG | 0.323090 | 1.1:-49212914 | MS.gene073779:CDS |
| TCGTTAGCAGCTTTAGGATT+TGG | 0.327090 | 1.1:+49211943 | None:intergenic |
| GTACCTGGACTTGAAGTTAC+AGG | 0.329764 | 1.1:-49210362 | MS.gene073779:intron |
| TTCCATTGGGCATCCCTCTC+AGG | 0.332933 | 1.1:+49209653 | None:intergenic |
| CAGTTTGCAATTAATGATTC+CGG | 0.348278 | 1.1:-49210554 | MS.gene073779:intron |
| AGCTTTGGGCCCTTTCCATT+GGG | 0.361441 | 1.1:+49209640 | None:intergenic |
| AAGCTTTGGGCCCTTTCCAT+TGG | 0.380490 | 1.1:+49209639 | None:intergenic |
| AACTGTTAGAACAGCGGCCT+GGG | 0.384150 | 1.1:-49212241 | MS.gene073779:CDS |
| TGCGTTTAGACCTGTTCATC+TGG | 0.386763 | 1.1:+49212887 | None:intergenic |
| ATTTGGTTCTCCAGATGAAC+AGG | 0.388197 | 1.1:-49212897 | MS.gene073779:intron |
| TGAAAGACACTGAACTAGTA+TGG | 0.390710 | 1.1:+49212919 | None:intergenic |
| CAAGCACACTGCTCAGCAAC+AGG | 0.395722 | 1.1:+49212369 | None:intergenic |
| CCTTTGCTTATTGCTCACCT+TGG | 0.403958 | 1.1:-49212688 | MS.gene073779:CDS |
| AGTTTAGGTAATCTCGTTGC+TGG | 0.405199 | 1.1:-49210413 | MS.gene073779:CDS |
| TTCTTATGCAGGAAGCAGCC+TGG | 0.405306 | 1.1:-49210125 | MS.gene073779:intron |
| AAATCTGATCCTGGAGCATC+TGG | 0.405497 | 1.1:-49209929 | MS.gene073779:CDS |
| GGCTTTGTCTAATCTAATCA+AGG | 0.406769 | 1.1:-49212220 | MS.gene073779:intron |
| TGTTGCTGAGCAGTGTGCTT+GGG | 0.409983 | 1.1:-49212367 | MS.gene073779:CDS |
| AGGAATGTTCTTCTAATTCA+AGG | 0.411220 | 1.1:-49212309 | MS.gene073779:CDS |
| GGTATCTCGTCGCCTTTAGT+TGG | 0.413181 | 1.1:+49209952 | None:intergenic |
| CTGTTGCTGAGCAGTGTGCT+TGG | 0.417330 | 1.1:-49212368 | MS.gene073779:CDS |
| CAACTGTTAGAACAGCGGCC+TGG | 0.418690 | 1.1:-49212242 | MS.gene073779:CDS |
| AACGAACTTATACGTGTTGA+TGG | 0.421049 | 1.1:-49211925 | MS.gene073779:CDS |
| AGATGCTCCAGGATCAGATT+TGG | 0.432126 | 1.1:+49209931 | None:intergenic |
| GATATTGAAGCTGCCAAGCT+AGG | 0.432212 | 1.1:-49209850 | MS.gene073779:CDS |
| TGCAGTTGCTTGAAGCTGCT+TGG | 0.439775 | 1.1:-49212771 | MS.gene073779:intron |
| GCTTTAACAGCAGACTCAAC+AGG | 0.444128 | 1.1:+49212953 | None:intergenic |
| ATTTGCGTTGCTCCAACTAA+AGG | 0.463292 | 1.1:-49209964 | MS.gene073779:CDS |
| TGTCTTACAAATATTGCTGC+AGG | 0.471941 | 1.1:-49212748 | MS.gene073779:CDS |
| ACTTATGCTGTTCTTGTACC+TGG | 0.472062 | 1.1:-49210377 | MS.gene073779:CDS |
| TCTTATGCAGGAAGCAGCCT+GGG | 0.472310 | 1.1:-49210124 | MS.gene073779:intron |
| AAATGAAGACGTGAGAACTA+TGG | 0.477955 | 1.1:-49209566 | MS.gene073779:CDS |
| GAGCAGTGTGCTTGGGCACT+AGG | 0.480061 | 1.1:-49212360 | MS.gene073779:CDS |
| GTTGAGTCTGCTGTTAAAGC+TGG | 0.480604 | 1.1:-49212950 | MS.gene073779:CDS |
| GTAAACGCCTTAATTCTTGA+AGG | 0.484486 | 1.1:+49212996 | None:intergenic |
| AGAGGGATGCCCAATGGAAA+GGG | 0.491824 | 1.1:-49209649 | MS.gene073779:CDS |
| CATTCTTGCAAGAGGTACTA+AGG | 0.496077 | 1.1:+49212284 | None:intergenic |
| CTAACAGTTGAACGTCTGTA+TGG | 0.500439 | 1.1:+49212255 | None:intergenic |
| GTGAAACTGAAATCTTTCCA+TGG | 0.506366 | 1.1:+49209591 | None:intergenic |
| TAGGTGCCCTTCAAGAATTA+AGG | 0.508329 | 1.1:-49213003 | MS.gene073779:CDS |
| AGGGCTTCAGTTTATAGAGC+TGG | 0.513753 | 1.1:-49209830 | MS.gene073779:intron |
| AAGCTTGTAGAACAAGAAGA+TGG | 0.514390 | 1.1:-49209622 | MS.gene073779:CDS |
| GCAATAAGCAAAGGCAATGC+AGG | 0.520043 | 1.1:+49212697 | None:intergenic |
| CGAGATACCAAATCTGATCC+TGG | 0.525748 | 1.1:-49209938 | MS.gene073779:CDS |
| TATACGTGTTGATGGAGTAT+TGG | 0.529161 | 1.1:-49211917 | MS.gene073779:CDS |
| AAATTTAGCTACCACCATGC+TGG | 0.529346 | 1.1:-49210626 | MS.gene073779:CDS |
| GGAATGTTCTTCTAATTCAA+GGG | 0.530928 | 1.1:-49212308 | MS.gene073779:CDS |
| ATATTGAAGCTGCCAAGCTA+GGG | 0.532211 | 1.1:-49209849 | MS.gene073779:CDS |
| TATAAACTGAAGCCCTAGCT+TGG | 0.533958 | 1.1:+49209837 | None:intergenic |
| GAGAGGGATGCCCAATGGAA+AGG | 0.535122 | 1.1:-49209650 | MS.gene073779:CDS |
| TTTGCTTATTGCTCACCTTG+GGG | 0.539936 | 1.1:-49212686 | MS.gene073779:CDS |
| AGAAGATGGGATTGAAGCCA+TGG | 0.541772 | 1.1:-49209608 | MS.gene073779:CDS |
| AATCAGCTACTGAAGTAGCA+TGG | 0.551163 | 1.1:-49210675 | MS.gene073779:CDS |
| CAAGAACAGCATAAGTTGCA+TGG | 0.554473 | 1.1:+49210384 | None:intergenic |
| TTGCTTATTGCTCACCTTGG+GGG | 0.560167 | 1.1:-49212685 | MS.gene073779:intron |
| GTGCTGTCTAATATAGCTGC+TGG | 0.563333 | 1.1:-49210102 | MS.gene073779:CDS |
| CTAACCAAATCAATAAAACC+TGG | 0.564282 | 1.1:+49209880 | None:intergenic |
| CGCCTCGTTTGATATAAGAA+AGG | 0.566448 | 1.1:-49210010 | MS.gene073779:CDS |
| AAGAACAGCATAAGTTGCAT+GGG | 0.568828 | 1.1:+49210385 | None:intergenic |
| TGAACACAGGGTCTTGAAGA+AGG | 0.570066 | 1.1:-49210204 | MS.gene073779:intron |
| ATCAGCTACTGAAGTAGCAT+GGG | 0.577005 | 1.1:-49210674 | MS.gene073779:CDS |
| TTGTGTCTGTAGGTCCTGAG+AGG | 0.583904 | 1.1:-49209667 | MS.gene073779:intron |
| AGCTTGTAGAACAAGAAGAT+GGG | 0.586537 | 1.1:-49209621 | MS.gene073779:CDS |
| TAGCCTGTAACTTCAAGTCC+AGG | 0.598877 | 1.1:+49210359 | None:intergenic |
| GGTGCAGTGCAGAAAAGAGT+AGG | 0.600329 | 1.1:-49213022 | MS.gene073779:CDS |
| ATGTCTGAATAGTGAACACA+GGG | 0.610379 | 1.1:-49210216 | MS.gene073779:CDS |
| TGCTTGGGCACTAGGAAATG+TGG | 0.610468 | 1.1:-49212352 | MS.gene073779:CDS |
| TAAACGCCTTAATTCTTGAA+GGG | 0.610932 | 1.1:+49212997 | None:intergenic |
| GATTAGATTAGACAAAGCCC+AGG | 0.612593 | 1.1:+49212224 | None:intergenic |
| GTCCTGAGAGGGATGCCCAA+TGG | 0.612830 | 1.1:-49209655 | MS.gene073779:CDS |
| AATGTCTGAATAGTGAACAC+AGG | 0.613426 | 1.1:-49210217 | MS.gene073779:CDS |
| TACGTTACTCTTCACCAGCA+TGG | 0.615970 | 1.1:+49210612 | None:intergenic |
| CCAAGGTGAGCAATAAGCAA+AGG | 0.619253 | 1.1:+49212688 | None:intergenic |
| TGGGCACTAGGAAATGTGGC+TGG | 0.620161 | 1.1:-49212348 | MS.gene073779:CDS |
| CAAGTGAAACCAGATGCTCC+AGG | 0.620229 | 1.1:+49209920 | None:intergenic |
| GGTAGCATCATTCTTGCAAG+AGG | 0.624604 | 1.1:+49212276 | None:intergenic |
| GTCTTACAAATATTGCTGCA+GGG | 0.625717 | 1.1:-49212747 | MS.gene073779:CDS |
| GAATGTTCTTCTAATTCAAG+GGG | 0.631308 | 1.1:-49212307 | MS.gene073779:CDS |
| TGTGTCTGTAGGTCCTGAGA+GGG | 0.639506 | 1.1:-49209666 | MS.gene073779:intron |
| GCAATTGATATATTCTAGCG+AGG | 0.651258 | 1.1:-49210064 | MS.gene073779:CDS |
| TTCCTTTCTTATATCAAACG+AGG | 0.654247 | 1.1:+49210008 | None:intergenic |
| ACACTGCTCAGCAACAGGTG+AGG | 0.682808 | 1.1:+49212374 | None:intergenic |
| TATTGCTGCAGGGAATCCAG+AGG | 0.701168 | 1.1:-49212737 | MS.gene073779:CDS |
| TTAACAGCAGACTCAACAGG+AGG | 0.709103 | 1.1:+49212956 | None:intergenic |
| CTTTCTTATATCAAACGAGG+CGG | 0.709812 | 1.1:+49210011 | None:intergenic |
| AGCTATATTAGACAGCACCC+AGG | 0.713093 | 1.1:+49210107 | None:intergenic |
| CTGGTGAAGATGAAGAGTTG+AGG | 0.724921 | 1.1:-49212329 | MS.gene073779:CDS |
| ACGTTCAACTGTTAGAACAG+CGG | 0.727420 | 1.1:-49212247 | MS.gene073779:CDS |
| GTTACTCTTCACCAGCATGG+TGG | 0.759357 | 1.1:+49210615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATATAACAATAATC+AGG | + | chr1.1:49212230-49212249 | None:intergenic | 10.0% |
| !! | AATTAATATAACAATAATCA+GGG | + | chr1.1:49212229-49212248 | None:intergenic | 10.0% |
| !! | TAATAAATCATTTAGAAATT+TGG | + | chr1.1:49211991-49212010 | None:intergenic | 10.0% |
| !! | TAATATTTGATTCAATAATT+TGG | - | chr1.1:49212777-49212796 | MS.gene073779:intron | 10.0% |
| !!! | AATGATTTATTAACTTATTT+TGG | - | chr1.1:49211999-49212018 | MS.gene073779:intron | 10.0% |
| !!! | ATATATTTTTTAATTGATAG+GGG | - | chr1.1:49209900-49209919 | MS.gene073779:CDS | 10.0% |
| !!! | CTATATATTTTTTAATTGAT+AGG | - | chr1.1:49209898-49209917 | MS.gene073779:CDS | 10.0% |
| !!! | TTTTATTTAGATAAATTGTT+AGG | - | chr1.1:49211363-49211382 | MS.gene073779:intron | 10.0% |
| !! | ATAAATAAGAAATGGTTTAA+TGG | + | chr1.1:49211963-49211982 | None:intergenic | 15.0% |
| !! | CTTTATATCTATAGAAATAT+AGG | + | chr1.1:49210319-49210338 | None:intergenic | 15.0% |
| !! | TAAATAAGAAATGGTTTAAT+GGG | + | chr1.1:49211962-49211981 | None:intergenic | 15.0% |
| !!! | AAACCATTTCTTATTTATTT+TGG | - | chr1.1:49211965-49211984 | MS.gene073779:intron | 15.0% |
| !!! | TACATGGAAATATTATTTTT+TGG | - | chr1.1:49212148-49212167 | MS.gene073779:intron | 15.0% |
| !!! | TATATTTTTTAATTGATAGG+GGG | - | chr1.1:49209901-49209920 | MS.gene073779:CDS | 15.0% |
| !!! | TTTTTGTTTCTAATAACAAT+GGG | - | chr1.1:49212492-49212511 | MS.gene073779:intron | 15.0% |
| !!! | TTTTTTGTTTCTAATAACAA+TGG | - | chr1.1:49212491-49212510 | MS.gene073779:intron | 15.0% |
| !! | AAAATCAATCTGAATAATTG+TGG | + | chr1.1:49212475-49212494 | None:intergenic | 20.0% |
| !! | AAATAAGAAATGGTTTAATG+GGG | + | chr1.1:49211961-49211980 | None:intergenic | 20.0% |
| !! | ACAATAAATCATAAACAACA+CGG | + | chr1.1:49213266-49213285 | None:intergenic | 20.0% |
| !! | ATGAAATATATTAACTGTAG+TGG | + | chr1.1:49211250-49211269 | None:intergenic | 20.0% |
| !! | CTATAGATATAAAGATTTAG+AGG | - | chr1.1:49210325-49210344 | MS.gene073779:intron | 20.0% |
| !! | TATAGAAATATAGGTCAAAA+AGG | + | chr1.1:49210310-49210329 | None:intergenic | 20.0% |
| !! | TATAGTTGCAAAATTAATGA+AGG | + | chr1.1:49210464-49210483 | None:intergenic | 20.0% |
| !! | TGAATGTATAAATAACTACT+TGG | - | chr1.1:49213155-49213174 | MS.gene073779:intron | 20.0% |
| !! | TGTATGTAATATTCATTTGA+TGG | + | chr1.1:49210763-49210782 | None:intergenic | 20.0% |
| !! | TTACAATGCTTTAACAATTA+AGG | + | chr1.1:49210362-49210381 | None:intergenic | 20.0% |
| !!! | AATTTTATTTTATCACCTCA+GGG | - | chr1.1:49212245-49212264 | MS.gene073779:CDS | 20.0% |
| !!! | ATAACACTTCTAAAAATCTA+CGG | + | chr1.1:49210879-49210898 | None:intergenic | 20.0% |
| !!! | CAAAAGTTTTATAATCAAAG+AGG | - | chr1.1:49211922-49211941 | MS.gene073779:CDS | 20.0% |
| !!! | TAATTTTATTTTATCACCTC+AGG | - | chr1.1:49212244-49212263 | MS.gene073779:CDS | 20.0% |
| ! | AATAAATCATAAACAACACG+GGG | + | chr1.1:49213264-49213283 | None:intergenic | 25.0% |
| ! | AATAACTACTTGGTAGATTA+TGG | - | chr1.1:49213165-49213184 | MS.gene073779:intron | 25.0% |
| ! | AGTGAACTTTATGATTATAG+TGG | + | chr1.1:49212061-49212080 | None:intergenic | 25.0% |
| ! | ATTTCAGTATGTTTGCATAT+AGG | - | chr1.1:49210981-49211000 | MS.gene073779:intron | 25.0% |
| ! | CAATAAATCATAAACAACAC+GGG | + | chr1.1:49213265-49213284 | None:intergenic | 25.0% |
| ! | CATACTGTTTGATTAAAATG+CGG | + | chr1.1:49212648-49212667 | None:intergenic | 25.0% |
| ! | CATATAAAAACACATGTATG+TGG | + | chr1.1:49210961-49210980 | None:intergenic | 25.0% |
| ! | CATTATAATGAAGTTCTTCA+AGG | - | chr1.1:49210489-49210508 | MS.gene073779:intron | 25.0% |
| ! | CTAGTAAAATTATGACTACA+TGG | - | chr1.1:49212132-49212151 | MS.gene073779:intron | 25.0% |
| ! | GAAGAACTTCATTATAATGT+TGG | + | chr1.1:49210488-49210507 | None:intergenic | 25.0% |
| ! | TGGCCAAAATAAATAAGAAA+TGG | + | chr1.1:49211971-49211990 | None:intergenic | 25.0% |
| ! | TGTAAGATATCTACAATCTA+AGG | - | chr1.1:49210377-49210396 | MS.gene073779:CDS | 25.0% |
| ! | TTATGATTTATTGTGTCTGT+AGG | - | chr1.1:49213272-49213291 | MS.gene073779:intron | 25.0% |
| ! | TTTCAGTATGTTTGCATATA+GGG | - | chr1.1:49210982-49211001 | MS.gene073779:intron | 25.0% |
| !! | AAACTATTCTGTTCTGTTTT+TGG | - | chr1.1:49211276-49211295 | MS.gene073779:intron | 25.0% |
| !! | TGAAGTTCATGAAATTTTTG+TGG | - | chr1.1:49212023-49212042 | MS.gene073779:intron | 25.0% |
| !! | TGTAGTCATAATTTTACTAG+AGG | + | chr1.1:49212132-49212151 | None:intergenic | 25.0% |
| AAAAAGAATAGGATGCAAGT+AGG | + | chr1.1:49210429-49210448 | None:intergenic | 30.0% | |
| AAAATTCTCGAGATTCTTAC+CGG | + | chr1.1:49212417-49212436 | None:intergenic | 30.0% | |
| AAGGAAGTTGCTTACATATT+AGG | - | chr1.1:49212958-49212977 | MS.gene073779:CDS | 30.0% | |
| AGAGCATATGGAATCATTAA+TGG | - | chr1.1:49210108-49210127 | MS.gene073779:CDS | 30.0% | |
| AGGAATGTTCTTCTAATTCA+AGG | - | chr1.1:49210640-49210659 | MS.gene073779:CDS | 30.0% | |
| AGTTGCAAAATTAATGAAGG+TGG | + | chr1.1:49210461-49210480 | None:intergenic | 30.0% | |
| CAGTTTGCAATTAATGATTC+CGG | - | chr1.1:49212395-49212414 | MS.gene073779:intron | 30.0% | |
| CATAAAGTTCACTTTCCTAT+AGG | - | chr1.1:49212068-49212087 | MS.gene073779:intron | 30.0% | |
| CCTAATAGCTCTCTTATATT+CGG | + | chr1.1:49211827-49211846 | None:intergenic | 30.0% | |
| CGAATATAAGAGAGCTATTA+GGG | - | chr1.1:49211825-49211844 | MS.gene073779:intron | 30.0% | |
| CTAACCAAATCAATAAAACC+TGG | + | chr1.1:49213072-49213091 | None:intergenic | 30.0% | |
| CTAATAGCTCTCTTATATTC+GGG | + | chr1.1:49211826-49211845 | None:intergenic | 30.0% | |
| CTACAATCTAAGGAAAGAAT+GGG | - | chr1.1:49210387-49210406 | MS.gene073779:CDS | 30.0% | |
| GAATGTTCTTCTAATTCAAG+GGG | - | chr1.1:49210642-49210661 | MS.gene073779:CDS | 30.0% | |
| GGAATGTTCTTCTAATTCAA+GGG | - | chr1.1:49210641-49210660 | MS.gene073779:CDS | 30.0% | |
| GTTGCAAAATTAATGAAGGT+GGG | + | chr1.1:49210460-49210479 | None:intergenic | 30.0% | |
| TAAACGCCTTAATTCTTGAA+GGG | + | chr1.1:49209955-49209974 | None:intergenic | 30.0% | |
| TCTACAATCTAAGGAAAGAA+TGG | - | chr1.1:49210386-49210405 | MS.gene073779:CDS | 30.0% | |
| TGATAATTTCATATGCATGC+AGG | - | chr1.1:49209695-49209714 | MS.gene073779:intron | 30.0% | |
| TGATTAGCAAATAGTTGTGT+TGG | - | chr1.1:49209605-49209624 | MS.gene073779:CDS | 30.0% | |
| TGCTAATCATGTGTCAAATA+TGG | + | chr1.1:49209594-49209613 | None:intergenic | 30.0% | |
| TTATCAACTAGTATTAGAGC+TGG | - | chr1.1:49211693-49211712 | MS.gene073779:intron | 30.0% | |
| TTCCTTTCTTATATCAAACG+AGG | + | chr1.1:49212944-49212963 | None:intergenic | 30.0% | |
| ! | AGTCTAGTTGACAAGTATTT+TGG | - | chr1.1:49213411-49213430 | MS.gene073779:intron | 30.0% |
| ! | ATTATGGTTTTTGTGGAAGA+TGG | - | chr1.1:49210929-49210948 | MS.gene073779:intron | 30.0% |
| ! | CAGTTACTTTATAACATGCA+TGG | - | chr1.1:49211150-49211169 | MS.gene073779:intron | 30.0% |
| ! | GATTGGAGTTCTAATAGATT+TGG | - | chr1.1:49211449-49211468 | MS.gene073779:intron | 30.0% |
| ! | GGACTACTTATGAATTTTGA+AGG | + | chr1.1:49210536-49210555 | None:intergenic | 30.0% |
| ! | TTTGGTTCATCACTGATATA+GGG | - | chr1.1:49211605-49211624 | MS.gene073779:intron | 30.0% |
| ! | TTTTAAGCTCAGAAACCTAT+AGG | + | chr1.1:49212086-49212105 | None:intergenic | 30.0% |
| !! | CGCATTTTAATCAAACAGTA+TGG | - | chr1.1:49212646-49212665 | MS.gene073779:intron | 30.0% |
| !! | GGGCATTTTAGAAAAAGAAT+AGG | + | chr1.1:49210440-49210459 | None:intergenic | 30.0% |
| !! | TATGTTGCTTTATTGTGCAT+GGG | - | chr1.1:49211183-49211202 | MS.gene073779:intron | 30.0% |
| !! | TTATGTTGCTTTATTGTGCA+TGG | - | chr1.1:49211182-49211201 | MS.gene073779:intron | 30.0% |
| !! | TTTTTAATTGATAGGGGGAA+GGG | - | chr1.1:49209906-49209925 | MS.gene073779:CDS | 30.0% |
| !!! | AGAGCTTTTTTTTCTTATGC+AGG | - | chr1.1:49212813-49212832 | MS.gene073779:intron | 30.0% |
| !!! | TTTTTTAATTGATAGGGGGA+AGG | - | chr1.1:49209905-49209924 | MS.gene073779:CDS | 30.0% |
| AAATGAAGACGTGAGAACTA+TGG | - | chr1.1:49213383-49213402 | MS.gene073779:intron | 35.0% | |
| AACGAACTTATACGTGTTGA+TGG | - | chr1.1:49211024-49211043 | MS.gene073779:intron | 35.0% | |
| AAGAAATGGTTTAATGGGGA+GGG | + | chr1.1:49211957-49211976 | None:intergenic | 35.0% | |
| AAGAACAGCATAAGTTGCAT+GGG | + | chr1.1:49212567-49212586 | None:intergenic | 35.0% | |
| AAGCTTGTAGAACAAGAAGA+TGG | - | chr1.1:49213327-49213346 | MS.gene073779:intron | 35.0% | |
| AATAATTGTGGTTTCGTGTG+CGG | + | chr1.1:49212463-49212482 | None:intergenic | 35.0% | |
| AATCTAAGGAAAGAATGGGA+TGG | - | chr1.1:49210391-49210410 | MS.gene073779:CDS | 35.0% | |
| AATGTCTGAATAGTGAACAC+AGG | - | chr1.1:49212732-49212751 | MS.gene073779:CDS | 35.0% | |
| AGCTTGTAGAACAAGAAGAT+GGG | - | chr1.1:49213328-49213347 | MS.gene073779:intron | 35.0% | |
| ATAAGTTCGTTAGCAGCTTT+AGG | + | chr1.1:49211015-49211034 | None:intergenic | 35.0% | |
| ATATAACAAAGGTAAGTCCG+GGG | + | chr1.1:49211096-49211115 | None:intergenic | 35.0% | |
| ATCAAAGTACAACTCCTCAT+TGG | + | chr1.1:49211791-49211810 | None:intergenic | 35.0% | |
| ATCAGTGATGAACCAAAGTT+AGG | + | chr1.1:49211602-49211621 | None:intergenic | 35.0% | |
| ATGTCTGAATAGTGAACACA+GGG | - | chr1.1:49212733-49212752 | MS.gene073779:CDS | 35.0% | |
| ATTGACATAATATCCCCGAA+AGG | - | chr1.1:49212200-49212219 | MS.gene073779:intron | 35.0% | |
| CATCAATCTTAGTGCCTAAT+TGG | + | chr1.1:49209726-49209745 | None:intergenic | 35.0% | |
| CATCACTGATATAGGGTTTA+GGG | - | chr1.1:49211612-49211631 | MS.gene073779:intron | 35.0% | |
| CCGAATATAAGAGAGCTATT+AGG | - | chr1.1:49211824-49211843 | MS.gene073779:intron | 35.0% | |
| CTAATAGATTTGGCAGAAGT+AGG | - | chr1.1:49211459-49211478 | MS.gene073779:intron | 35.0% | |
| CTAGTTCAGTGTCTTTCATT+TGG | - | chr1.1:49210035-49210054 | MS.gene073779:CDS | 35.0% | |
| CTTCTTGTTCTACAAGCTTT+GGG | + | chr1.1:49213326-49213345 | None:intergenic | 35.0% | |
| CTTTCTTATATCAAACGAGG+CGG | + | chr1.1:49212941-49212960 | None:intergenic | 35.0% | |
| GAAGAAGTTAGTGTAGTTTG+TGG | - | chr1.1:49211421-49211440 | MS.gene073779:intron | 35.0% | |
| GAGCTTAAAATCAGAAGTGA+TGG | - | chr1.1:49212096-49212115 | MS.gene073779:intron | 35.0% | |
| GATATAACAAAGGTAAGTCC+GGG | + | chr1.1:49211097-49211116 | None:intergenic | 35.0% | |
| GCAATTGATATATTCTAGCG+AGG | - | chr1.1:49212885-49212904 | MS.gene073779:intron | 35.0% | |
| GGATATAACAAAGGTAAGTC+CGG | + | chr1.1:49211098-49211117 | None:intergenic | 35.0% | |
| GGTTTAGATCTCAAAGAATG+TGG | + | chr1.1:49213243-49213262 | None:intergenic | 35.0% | |
| GTAAACGCCTTAATTCTTGA+AGG | + | chr1.1:49209956-49209975 | None:intergenic | 35.0% | |
| GTCTTACAAATATTGCTGCA+GGG | - | chr1.1:49210202-49210221 | MS.gene073779:intron | 35.0% | |
| GTGAAACTGAAATCTTTCCA+TGG | + | chr1.1:49213361-49213380 | None:intergenic | 35.0% | |
| TAAACTTCGCAAAACCTACA+GGG | + | chr1.1:49212522-49212541 | None:intergenic | 35.0% | |
| TAAGAAATGGTTTAATGGGG+AGG | + | chr1.1:49211958-49211977 | None:intergenic | 35.0% | |
| TCATCACTGATATAGGGTTT+AGG | - | chr1.1:49211611-49211630 | MS.gene073779:intron | 35.0% | |
| TCTTCTTGTTCTACAAGCTT+TGG | + | chr1.1:49213327-49213346 | None:intergenic | 35.0% | |
| TGAAAGACACTGAACTAGTA+TGG | + | chr1.1:49210033-49210052 | None:intergenic | 35.0% | |
| TGTCTTACAAATATTGCTGC+AGG | - | chr1.1:49210201-49210220 | MS.gene073779:intron | 35.0% | |
| TTCGGGGATATTATGTCAAT+TGG | + | chr1.1:49212200-49212219 | None:intergenic | 35.0% | |
| TTGAAGACGATTCCAAAGTT+TGG | - | chr1.1:49211739-49211758 | MS.gene073779:intron | 35.0% | |
| ! | ACATTTTATCAGAGCTTGCA+TGG | + | chr1.1:49212717-49212736 | None:intergenic | 35.0% |
| ! | AGTGTTTTCTCTTACCTCTT+TGG | - | chr1.1:49209779-49209798 | MS.gene073779:intron | 35.0% |
| ! | CTGGTTTCACTTGTTGAAAA+AGG | - | chr1.1:49213039-49213058 | MS.gene073779:intron | 35.0% |
| ! | CTTGTGCATTATGGTTTTTG+TGG | - | chr1.1:49210922-49210941 | MS.gene073779:intron | 35.0% |
| ! | CTTTGGTTCATCACTGATAT+AGG | - | chr1.1:49211604-49211623 | MS.gene073779:intron | 35.0% |
| ! | GAAAAAAGGTGCAATAGCAA+AGG | + | chr1.1:49212916-49212935 | None:intergenic | 35.0% |
| ! | GGCTTTGTCTAATCTAATCA+AGG | - | chr1.1:49210729-49210748 | MS.gene073779:intron | 35.0% |
| ! | TATACGTGTTGATGGAGTAT+TGG | - | chr1.1:49211032-49211051 | MS.gene073779:intron | 35.0% |
| ! | TATGTACTCATCAGCTTTTG+TGG | - | chr1.1:49210896-49210915 | MS.gene073779:intron | 35.0% |
| ! | TGCTGACTAGGATATAACAA+AGG | + | chr1.1:49211107-49211126 | None:intergenic | 35.0% |
| ! | TGTAGTTTGTGGTTGTTGAT+TGG | - | chr1.1:49211432-49211451 | MS.gene073779:intron | 35.0% |
| ! | TTATGTCAATTGGTAACAGC+TGG | + | chr1.1:49212190-49212209 | None:intergenic | 35.0% |
| ! | TTGAAGATTTTCTCAGTCTG+TGG | + | chr1.1:49209827-49209846 | None:intergenic | 35.0% |
| ! | TTGGTAACAGCTGGATAAAT+CGG | + | chr1.1:49212181-49212200 | None:intergenic | 35.0% |
| !! | AAGTATTTTGGAGAGGACTA+TGG | - | chr1.1:49213423-49213442 | MS.gene073779:intron | 35.0% |
| !! | AGTATTTTGGAGAGGACTAT+GGG | - | chr1.1:49213424-49213443 | MS.gene073779:intron | 35.0% |
| !! | AGTTGACAAGTATTTTGGAG+AGG | - | chr1.1:49213416-49213435 | MS.gene073779:intron | 35.0% |
| !! | TCTGAATCTTCTGGTTTAGA+GGG | - | chr1.1:49209655-49209674 | MS.gene073779:CDS | 35.0% |
| !! | TGGATAGTTGGGATTTGTTT+TGG | - | chr1.1:49211515-49211534 | MS.gene073779:intron | 35.0% |
| !! | TTACCTCTTTGGTAATGTGT+CGG | - | chr1.1:49209790-49209809 | MS.gene073779:intron | 35.0% |
| !! | TTCTGAATCTTCTGGTTTAG+AGG | - | chr1.1:49209654-49209673 | MS.gene073779:CDS | 35.0% |
| !!! | ATAGTTGGGATTTGTTTTGG+TGG | - | chr1.1:49211518-49211537 | MS.gene073779:intron | 35.0% |
| !!! | CTTGCCAGGTTTTATTGATT+TGG | - | chr1.1:49213065-49213084 | MS.gene073779:intron | 35.0% |
| !!! | TAGTTGGGATTTGTTTTGGT+GGG | - | chr1.1:49211519-49211538 | MS.gene073779:intron | 35.0% |
| AAATTTAGCTACCACCATGC+TGG | - | chr1.1:49212323-49212342 | MS.gene073779:CDS | 40.0% | |
| AAGACGATTCCAAAGTTTGG+CGG | - | chr1.1:49211742-49211761 | MS.gene073779:intron | 40.0% | |
| AAGTTAGGAAGGACAAACAC+AGG | + | chr1.1:49211587-49211606 | None:intergenic | 40.0% | |
| AATAATCAGGGTAGCCTTTC+GGG | + | chr1.1:49212217-49212236 | None:intergenic | 40.0% | |
| AATCAGCTACTGAAGTAGCA+TGG | - | chr1.1:49212274-49212293 | MS.gene073779:CDS | 40.0% | |
| ACCAGAAGATTCAGAACACT+TGG | + | chr1.1:49209650-49209669 | None:intergenic | 40.0% | |
| ACCATCCATATGCAAAATGG+CGG | - | chr1.1:49211892-49211911 | MS.gene073779:CDS | 40.0% | |
| ACGTTCAACTGTTAGAACAG+CGG | - | chr1.1:49210702-49210721 | MS.gene073779:intron | 40.0% | |
| ACTTATGCTGTTCTTGTACC+TGG | - | chr1.1:49212572-49212591 | MS.gene073779:intron | 40.0% | |
| AGGCTATTGATATTCCTCTC+AGG | + | chr1.1:49211567-49211586 | None:intergenic | 40.0% | |
| AGTAGGCTATAAAGAGAGAG+TGG | - | chr1.1:49211476-49211495 | MS.gene073779:intron | 40.0% | |
| AGTTTAGGTAATCTCGTTGC+TGG | - | chr1.1:49212536-49212555 | MS.gene073779:intron | 40.0% | |
| ATATTGAAGCTGCCAAGCTA+GGG | - | chr1.1:49213100-49213119 | MS.gene073779:intron | 40.0% | |
| ATCAGCTACTGAAGTAGCAT+GGG | - | chr1.1:49212275-49212294 | MS.gene073779:CDS | 40.0% | |
| ATTGTTAGGAAAGCCCAAAC+AGG | - | chr1.1:49211377-49211396 | MS.gene073779:intron | 40.0% | |
| ATTTGCGTTGCTCCAACTAA+AGG | - | chr1.1:49212985-49213004 | MS.gene073779:CDS | 40.0% | |
| CAAGAACAGCATAAGTTGCA+TGG | + | chr1.1:49212568-49212587 | None:intergenic | 40.0% | |
| CAATAATCAGGGTAGCCTTT+CGG | + | chr1.1:49212218-49212237 | None:intergenic | 40.0% | |
| CGCCTCGTTTGATATAAGAA+AGG | - | chr1.1:49212939-49212958 | MS.gene073779:CDS | 40.0% | |
| CTAAACTTCGCAAAACCTAC+AGG | + | chr1.1:49212523-49212542 | None:intergenic | 40.0% | |
| CTAACAGTTGAACGTCTGTA+TGG | + | chr1.1:49210697-49210716 | None:intergenic | 40.0% | |
| CTAGTATTAGAGCTGGATGT+TGG | - | chr1.1:49211700-49211719 | MS.gene073779:intron | 40.0% | |
| CTTATATTCGGGTGTTCTGT+TGG | + | chr1.1:49211815-49211834 | None:intergenic | 40.0% | |
| CTTTGCTTATTGCTCACCTT+GGG | - | chr1.1:49210262-49210281 | MS.gene073779:intron | 40.0% | |
| GACACCATCCATATGCAAAA+TGG | - | chr1.1:49211889-49211908 | MS.gene073779:CDS | 40.0% | |
| GATTAGATTAGACAAAGCCC+AGG | + | chr1.1:49210728-49210747 | None:intergenic | 40.0% | |
| GTAGGCTATAAAGAGAGAGT+GGG | - | chr1.1:49211477-49211496 | MS.gene073779:intron | 40.0% | |
| GTGATGAACCAAAGTTAGGA+AGG | + | chr1.1:49211598-49211617 | None:intergenic | 40.0% | |
| GTGTTTGTCCTTCCTAACTT+TGG | - | chr1.1:49211587-49211606 | MS.gene073779:intron | 40.0% | |
| TAACAATGGGAAATCCCTGT+AGG | - | chr1.1:49212505-49212524 | MS.gene073779:intron | 40.0% | |
| TAAGGAAAGAATGGGATGGA+GGG | - | chr1.1:49210395-49210414 | MS.gene073779:CDS | 40.0% | |
| TAGGTGCCCTTCAAGAATTA+AGG | - | chr1.1:49209946-49209965 | MS.gene073779:CDS | 40.0% | |
| TATAAACTGAAGCCCTAGCT+TGG | + | chr1.1:49213115-49213134 | None:intergenic | 40.0% | |
| TCTTCTTTGCTTGTACTGTG+TGG | - | chr1.1:49210852-49210871 | MS.gene073779:intron | 40.0% | |
| TGCATGTTATGCAGAGCATA+TGG | - | chr1.1:49210096-49210115 | MS.gene073779:CDS | 40.0% | |
| TTGTGGTCTCTTGTGCATTA+TGG | - | chr1.1:49210913-49210932 | MS.gene073779:intron | 40.0% | |
| TTTGCTTATTGCTCACCTTG+GGG | - | chr1.1:49210263-49210282 | MS.gene073779:intron | 40.0% | |
| ! | AACAGTGAAACATGCTGACT+AGG | + | chr1.1:49211119-49211138 | None:intergenic | 40.0% |
| ! | ACCAAGTGTTCTGAATCTTC+TGG | - | chr1.1:49209646-49209665 | MS.gene073779:CDS | 40.0% |
| ! | CAAATAGTTGTGTTGGTCTG+AGG | - | chr1.1:49209612-49209631 | MS.gene073779:CDS | 40.0% |
| ! | CTGTAGGTTTTGCGAAGTTT+AGG | - | chr1.1:49212521-49212540 | MS.gene073779:intron | 40.0% |
| ! | TTATTGGTTGCTGACCAATG+AGG | - | chr1.1:49211774-49211793 | MS.gene073779:intron | 40.0% |
| !! | AGAGCTATTAGGGCTCTAAA+GGG | - | chr1.1:49211835-49211854 | MS.gene073779:intron | 40.0% |
| !! | AGCAAAGCTTTTGTTTCCTC+TGG | + | chr1.1:49210231-49210250 | None:intergenic | 40.0% |
| !! | ATTTGGTTCTCCAGATGAAC+AGG | - | chr1.1:49210052-49210071 | MS.gene073779:CDS | 40.0% |
| !! | CATTCTTGCAAGAGGTACTA+AGG | + | chr1.1:49210668-49210687 | None:intergenic | 40.0% |
| !! | CTGAATCTTCTGGTTTAGAG+GGG | - | chr1.1:49209656-49209675 | MS.gene073779:CDS | 40.0% |
| !! | TACCTCTTTGGTAATGTGTC+GGG | - | chr1.1:49209791-49209810 | MS.gene073779:intron | 40.0% |
| !! | TCGTTAGCAGCTTTAGGATT+TGG | + | chr1.1:49211009-49211028 | None:intergenic | 40.0% |
| !! | TGAATCTTCTGGTTTAGAGG+GGG | - | chr1.1:49209657-49209676 | MS.gene073779:CDS | 40.0% |
| AAAACCCAGCCAAACCTGTT+TGG | + | chr1.1:49211394-49211413 | None:intergenic | 45.0% | |
| AAACCCAGCCAAACCTGTTT+GGG | + | chr1.1:49211393-49211412 | None:intergenic | 45.0% | |
| AAGTGCTTCCATTCAGCGTT+TGG | - | chr1.1:49211858-49211877 | MS.gene073779:intron | 45.0% | |
| AGAAGATGGGATTGAAGCCA+TGG | - | chr1.1:49213341-49213360 | MS.gene073779:intron | 45.0% | |
| AGAGAGAGTGGGAGAAGATT+CGG | - | chr1.1:49211488-49211507 | MS.gene073779:intron | 45.0% | |
| AGATGCTCCAGGATCAGATT+TGG | + | chr1.1:49213021-49213040 | None:intergenic | 45.0% | |
| AGATTCGGAGTCTGGATAGT+TGG | - | chr1.1:49211503-49211522 | MS.gene073779:intron | 45.0% | |
| AGCTATATTAGACAGCACCC+AGG | + | chr1.1:49212845-49212864 | None:intergenic | 45.0% | |
| AGGGCTTCAGTTTATAGAGC+TGG | - | chr1.1:49213119-49213138 | MS.gene073779:intron | 45.0% | |
| AGTGCTTCCATTCAGCGTTT+GGG | - | chr1.1:49211859-49211878 | MS.gene073779:intron | 45.0% | |
| ATAATCAGGGTAGCCTTTCG+GGG | + | chr1.1:49212216-49212235 | None:intergenic | 45.0% | |
| ATTTCCACCCAAACGCTGAA+TGG | + | chr1.1:49211869-49211888 | None:intergenic | 45.0% | |
| CACTGATATAGGGTTTAGGG+AGG | - | chr1.1:49211615-49211634 | MS.gene073779:intron | 45.0% | |
| CCAAGGTGAGCAATAAGCAA+AGG | + | chr1.1:49210264-49210283 | None:intergenic | 45.0% | |
| CCATCCATATGCAAAATGGC+GGG | - | chr1.1:49211893-49211912 | MS.gene073779:CDS | 45.0% | |
| CCTTTGCTTATTGCTCACCT+TGG | - | chr1.1:49210261-49210280 | MS.gene073779:intron | 45.0% | |
| CGAGATACCAAATCTGATCC+TGG | - | chr1.1:49213011-49213030 | MS.gene073779:CDS | 45.0% | |
| CTAAGGAAAGAATGGGATGG+AGG | - | chr1.1:49210394-49210413 | MS.gene073779:CDS | 45.0% | |
| CTGGTGAAGATGAAGAGTTG+AGG | - | chr1.1:49210620-49210639 | MS.gene073779:CDS | 45.0% | |
| GATATTGAAGCTGCCAAGCT+AGG | - | chr1.1:49213099-49213118 | MS.gene073779:intron | 45.0% | |
| GATTCGGAGTCTGGATAGTT+GGG | - | chr1.1:49211504-49211523 | MS.gene073779:intron | 45.0% | |
| GCAATAAGCAAAGGCAATGC+AGG | + | chr1.1:49210255-49210274 | None:intergenic | 45.0% | |
| GCATGCAGGATTGTCCAATT+AGG | - | chr1.1:49209709-49209728 | MS.gene073779:intron | 45.0% | |
| GCTTTAACAGCAGACTCAAC+AGG | + | chr1.1:49209999-49210018 | None:intergenic | 45.0% | |
| GGTAGCATCATTCTTGCAAG+AGG | + | chr1.1:49210676-49210695 | None:intergenic | 45.0% | |
| GTACCTGGACTTGAAGTTAC+AGG | - | chr1.1:49212587-49212606 | MS.gene073779:intron | 45.0% | |
| GTGCTGTCTAATATAGCTGC+TGG | - | chr1.1:49212847-49212866 | MS.gene073779:intron | 45.0% | |
| GTTGAAAAAGGATGCTTGCC+AGG | - | chr1.1:49213051-49213070 | MS.gene073779:intron | 45.0% | |
| GTTGAGTCTGCTGTTAAAGC+TGG | - | chr1.1:49209999-49210018 | MS.gene073779:CDS | 45.0% | |
| TACGTTACTCTTCACCAGCA+TGG | + | chr1.1:49212340-49212359 | None:intergenic | 45.0% | |
| TAGAGCTGGATGTTGGATTG+TGG | - | chr1.1:49211707-49211726 | MS.gene073779:intron | 45.0% | |
| TAGCCTGTAACTTCAAGTCC+AGG | + | chr1.1:49212593-49212612 | None:intergenic | 45.0% | |
| TAGGAAAGCCCAAACAGGTT+TGG | - | chr1.1:49211382-49211401 | MS.gene073779:intron | 45.0% | |
| TGAACACAGGGTCTTGAAGA+AGG | - | chr1.1:49212745-49212764 | MS.gene073779:CDS | 45.0% | |
| TGCGTTTAGACCTGTTCATC+TGG | + | chr1.1:49210065-49210084 | None:intergenic | 45.0% | |
| TTAACAGCAGACTCAACAGG+AGG | + | chr1.1:49209996-49210015 | None:intergenic | 45.0% | |
| TTGCTTATTGCTCACCTTGG+GGG | - | chr1.1:49210264-49210283 | MS.gene073779:intron | 45.0% | |
| ! | AAATCTGATCCTGGAGCATC+TGG | - | chr1.1:49213020-49213039 | MS.gene073779:CDS | 45.0% |
| ! | GAGAGCTATTAGGGCTCTAA+AGG | - | chr1.1:49211834-49211853 | MS.gene073779:intron | 45.0% |
| ! | TAGCTGATTCATCATCCCTG+AGG | + | chr1.1:49212263-49212282 | None:intergenic | 45.0% |
| !!! | TATATATTTTTTAATTGATA+GGG | - | chr1.1:49209899-49209918 | MS.gene073779:CDS | 5.0% |
| AAAGCCCAAACAGGTTTGGC+TGG | - | chr1.1:49211386-49211405 | MS.gene073779:intron | 50.0% | |
| AAAGTGATCACTCACCCCCA+AGG | + | chr1.1:49210281-49210300 | None:intergenic | 50.0% | |
| AACTGTTAGAACAGCGGCCT+GGG | - | chr1.1:49210708-49210727 | MS.gene073779:intron | 50.0% | |
| AAGCAGCTTCAAGCAACTGC+AGG | + | chr1.1:49210179-49210198 | None:intergenic | 50.0% | |
| AAGCCCAAACAGGTTTGGCT+GGG | - | chr1.1:49211387-49211406 | MS.gene073779:intron | 50.0% | |
| AATTGTGGTTTCGTGTGCGG+TGG | + | chr1.1:49212460-49212479 | None:intergenic | 50.0% | |
| AGAGGGATGCCCAATGGAAA+GGG | - | chr1.1:49213300-49213319 | MS.gene073779:intron | 50.0% | |
| CAAACGAGGCGGCAGAAAAA+AGG | + | chr1.1:49212930-49212949 | None:intergenic | 50.0% | |
| CAAGTGAAACCAGATGCTCC+AGG | + | chr1.1:49213032-49213051 | None:intergenic | 50.0% | |
| GGTATCTCGTCGCCTTTAGT+TGG | + | chr1.1:49213000-49213019 | None:intergenic | 50.0% | |
| GGTGCAGTGCAGAAAAGAGT+AGG | - | chr1.1:49209927-49209946 | MS.gene073779:CDS | 50.0% | |
| GTTACTCTTCACCAGCATGG+TGG | + | chr1.1:49212337-49212356 | None:intergenic | 50.0% | |
| TATTGCTGCAGGGAATCCAG+AGG | - | chr1.1:49210212-49210231 | MS.gene073779:CDS | 50.0% | |
| TCCAAAGTTTGGCGGAGAGA+AGG | - | chr1.1:49211750-49211769 | MS.gene073779:intron | 50.0% | |
| TCTTATGCAGGAAGCAGCCT+GGG | - | chr1.1:49212825-49212844 | MS.gene073779:intron | 50.0% | |
| TGCAGTTGCTTGAAGCTGCT+TGG | - | chr1.1:49210178-49210197 | MS.gene073779:intron | 50.0% | |
| TGCCCGACACATTACCAAAG+AGG | + | chr1.1:49209796-49209815 | None:intergenic | 50.0% | |
| TGCTTGGGCACTAGGAAATG+TGG | - | chr1.1:49210597-49210616 | MS.gene073779:CDS | 50.0% | |
| TGTGTCTGTAGGTCCTGAGA+GGG | - | chr1.1:49213283-49213302 | MS.gene073779:intron | 50.0% | |
| TGTTGCTGAGCAGTGTGCTT+GGG | - | chr1.1:49210582-49210601 | MS.gene073779:CDS | 50.0% | |
| TTCTTATGCAGGAAGCAGCC+TGG | - | chr1.1:49212824-49212843 | MS.gene073779:intron | 50.0% | |
| TTGGCGGAGAGAAGGCTTAT+TGG | - | chr1.1:49211758-49211777 | MS.gene073779:intron | 50.0% | |
| TTGTGTCTGTAGGTCCTGAG+AGG | - | chr1.1:49213282-49213301 | MS.gene073779:intron | 50.0% | |
| ! | CGAAAGCGTGAGTATTTCCC+CGG | - | chr1.1:49211076-49211095 | MS.gene073779:intron | 50.0% |
| ! | GGAGCTCTTTTCTGCAGAAC+AGG | + | chr1.1:49210557-49210576 | None:intergenic | 50.0% |
| !! | AAGCTTTGGGCCCTTTCCAT+TGG | + | chr1.1:49213313-49213332 | None:intergenic | 50.0% |
| !! | ACGTCCCGCCATTTTGCATA+TGG | + | chr1.1:49211900-49211919 | None:intergenic | 50.0% |
| !! | AGCTTTGGGCCCTTTCCATT+GGG | + | chr1.1:49213312-49213331 | None:intergenic | 50.0% |
| !! | CCCGCCATTTTGCATATGGA+TGG | + | chr1.1:49211896-49211915 | None:intergenic | 50.0% |
| !!! | GGGATTTGTTTTGGTGGGAG+AGG | - | chr1.1:49211524-49211543 | MS.gene073779:intron | 50.0% |
| ACACTGCTCAGCAACAGGTG+AGG | + | chr1.1:49210578-49210597 | None:intergenic | 55.0% | |
| CAACTGTTAGAACAGCGGCC+TGG | - | chr1.1:49210707-49210726 | MS.gene073779:intron | 55.0% | |
| CAAGCACACTGCTCAGCAAC+AGG | + | chr1.1:49210583-49210602 | None:intergenic | 55.0% | |
| CAGGCTCTCGAAATCCTGAG+AGG | - | chr1.1:49211550-49211569 | MS.gene073779:intron | 55.0% | |
| CTGTTGCTGAGCAGTGTGCT+TGG | - | chr1.1:49210581-49210600 | MS.gene073779:CDS | 55.0% | |
| GAGAGGGATGCCCAATGGAA+AGG | - | chr1.1:49213299-49213318 | MS.gene073779:intron | 55.0% | |
| GCCTTCTCTCCGCCAAACTT+TGG | + | chr1.1:49211754-49211773 | None:intergenic | 55.0% | |
| GCTTCCATTCAGCGTTTGGG+TGG | - | chr1.1:49211862-49211881 | MS.gene073779:intron | 55.0% | |
| GTGGGAGAAGATTCGGAGTC+TGG | - | chr1.1:49211495-49211514 | MS.gene073779:intron | 55.0% | |
| TGGGCACTAGGAAATGTGGC+TGG | - | chr1.1:49210601-49210620 | MS.gene073779:CDS | 55.0% | |
| TTCCATTGGGCATCCCTCTC+AGG | + | chr1.1:49213299-49213318 | None:intergenic | 55.0% | |
| !! | GTTTTGGTGGGAGAGGTCTC+AGG | - | chr1.1:49211531-49211550 | MS.gene073779:intron | 55.0% |
| GAGCAGTGTGCTTGGGCACT+AGG | - | chr1.1:49210589-49210608 | MS.gene073779:CDS | 60.0% | |
| GTCCTGAGAGGGATGCCCAA+TGG | - | chr1.1:49213294-49213313 | MS.gene073779:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 49209513 | 49213458 | 49209513 | ID=MS.gene073779 |
| chr1.1 | mRNA | 49209513 | 49213458 | 49209513 | ID=MS.gene073779.t1;Parent=MS.gene073779 |
| chr1.1 | exon | 49213453 | 49213458 | 49213453 | ID=MS.gene073779.t1.exon1;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49213453 | 49213458 | 49213453 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49212898 | 49213044 | 49212898 | ID=MS.gene073779.t1.exon2;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49212898 | 49213044 | 49212898 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49212686 | 49212788 | 49212686 | ID=MS.gene073779.t1.exon3;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49212686 | 49212788 | 49212686 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49212221 | 49212405 | 49212221 | ID=MS.gene073779.t1.exon4;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49212221 | 49212405 | 49212221 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49211889 | 49211968 | 49211889 | ID=MS.gene073779.t1.exon5;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49211889 | 49211968 | 49211889 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49210555 | 49210705 | 49210555 | ID=MS.gene073779.t1.exon6;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49210555 | 49210705 | 49210555 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49210363 | 49210444 | 49210363 | ID=MS.gene073779.t1.exon7;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49210363 | 49210444 | 49210363 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49210205 | 49210263 | 49210205 | ID=MS.gene073779.t1.exon8;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49210205 | 49210263 | 49210205 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49209831 | 49210136 | 49209831 | ID=MS.gene073779.t1.exon9;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49209831 | 49210136 | 49209831 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| chr1.1 | exon | 49209513 | 49209677 | 49209513 | ID=MS.gene073779.t1.exon10;Parent=MS.gene073779.t1 |
| chr1.1 | CDS | 49209513 | 49209677 | 49209513 | ID=cds.MS.gene073779.t1;Parent=MS.gene073779.t1 |
| Gene Sequence |
| Protein sequence |
