Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073799.t1 | RHN79846.1 | 96.9 | 286 | 3 | 1 | 1 | 280 | 59 | 344 | 2.00E-151 | 545 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073799.t1 | Q10S93 | 77.8 | 234 | 52 | 0 | 47 | 280 | 60 | 293 | 7.7e-104 | 378.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073799.t1 | A0A072VJS4 | 96.9 | 286 | 3 | 1 | 1 | 280 | 1 | 286 | 1.4e-151 | 545.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011389 | MS.gene073799 | PPI |
| MS.gene073799 | MS.gene033347 | PPI |
| MS.gene073799 | MS.gene057156 | PPI |
| MS.gene065461 | MS.gene073799 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073799.t1 | MTR_1g067050 | 96.853 | 286 | 3 | 1 | 1 | 280 | 1 | 286 | 0.0 | 559 |
| MS.gene073799.t1 | MTR_7g100530 | 74.286 | 280 | 60 | 3 | 1 | 280 | 1 | 268 | 1.20e-143 | 404 |
| MS.gene073799.t1 | MTR_4g103800 | 31.683 | 202 | 120 | 4 | 49 | 245 | 31 | 219 | 1.69e-28 | 109 |
| MS.gene073799.t1 | MTR_2g461290 | 33.508 | 191 | 106 | 4 | 54 | 241 | 79 | 251 | 4.95e-25 | 104 |
| MS.gene073799.t1 | MTR_4g035170 | 31.414 | 191 | 112 | 5 | 54 | 242 | 94 | 267 | 4.24e-21 | 90.9 |
| MS.gene073799.t1 | MTR_4g103800 | 30.909 | 165 | 106 | 3 | 49 | 208 | 31 | 192 | 4.41e-21 | 88.6 |
| MS.gene073799.t1 | MTR_8g009520 | 26.699 | 206 | 105 | 5 | 44 | 247 | 19 | 180 | 1.81e-16 | 76.6 |
| MS.gene073799.t1 | MTR_4g035850 | 24.242 | 231 | 126 | 5 | 35 | 263 | 46 | 229 | 2.20e-16 | 77.0 |
| MS.gene073799.t1 | MTR_4g035850 | 24.242 | 231 | 126 | 5 | 35 | 263 | 23 | 206 | 2.59e-16 | 76.3 |
| MS.gene073799.t1 | MTR_5g068940 | 23.810 | 231 | 127 | 5 | 35 | 263 | 23 | 206 | 1.08e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073799.t1 | AT2G37250 | 67.361 | 288 | 79 | 3 | 3 | 280 | 2 | 284 | 1.33e-136 | 387 |
| MS.gene073799.t1 | AT2G39270 | 72.574 | 237 | 63 | 1 | 44 | 280 | 61 | 295 | 7.14e-110 | 320 |
| MS.gene073799.t1 | AT3G01820 | 34.529 | 223 | 110 | 4 | 48 | 269 | 63 | 250 | 5.13e-35 | 127 |
| MS.gene073799.t1 | AT5G50370 | 32.227 | 211 | 123 | 5 | 49 | 254 | 36 | 231 | 9.47e-30 | 113 |
| MS.gene073799.t1 | AT5G63400 | 31.863 | 204 | 121 | 4 | 49 | 247 | 35 | 225 | 7.94e-29 | 110 |
| MS.gene073799.t1 | AT5G35170 | 33.019 | 212 | 121 | 4 | 45 | 253 | 77 | 270 | 1.54e-28 | 114 |
| MS.gene073799.t1 | AT5G35170 | 33.019 | 212 | 121 | 4 | 45 | 253 | 77 | 270 | 1.68e-28 | 114 |
| MS.gene073799.t1 | AT5G50370 | 32.990 | 194 | 112 | 4 | 49 | 237 | 36 | 216 | 2.33e-27 | 106 |
| MS.gene073799.t1 | AT5G47840 | 31.776 | 214 | 120 | 7 | 33 | 241 | 54 | 246 | 7.19e-25 | 100 |
| MS.gene073799.t1 | AT5G47840 | 31.280 | 211 | 122 | 6 | 33 | 241 | 54 | 243 | 8.50e-25 | 100 |
| MS.gene073799.t1 | AT5G63400 | 34.286 | 140 | 85 | 2 | 49 | 183 | 35 | 172 | 6.56e-23 | 93.6 |
| MS.gene073799.t1 | AT4G25280 | 27.064 | 218 | 114 | 4 | 53 | 268 | 59 | 233 | 7.99e-22 | 92.0 |
| MS.gene073799.t1 | AT4G25280 | 27.064 | 218 | 114 | 4 | 53 | 268 | 59 | 233 | 7.99e-22 | 92.0 |
| MS.gene073799.t1 | AT3G60180 | 28.302 | 212 | 102 | 5 | 44 | 251 | 19 | 184 | 1.66e-19 | 84.7 |
| MS.gene073799.t1 | AT3G60180 | 28.302 | 212 | 102 | 5 | 44 | 251 | 19 | 184 | 1.66e-19 | 84.7 |
| MS.gene073799.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.34e-18 | 82.0 |
| MS.gene073799.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.34e-18 | 82.0 |
| MS.gene073799.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.34e-18 | 82.0 |
| MS.gene073799.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.48e-18 | 82.4 |
Find 89 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAACTTCGGCCAAGATTC+TGG | 0.217568 | 1.3:-47016543 | None:intergenic |
| CCGCAGCAGAGGAAAATTAT+TGG | 0.236642 | 1.3:+47016497 | MS.gene073799:CDS |
| CGTTGCTTCTATTGACATTA+AGG | 0.253863 | 1.3:+47015973 | MS.gene073799:CDS |
| AGCGGAGCCATGACAATTCC+AGG | 0.354690 | 1.3:-47016010 | None:intergenic |
| ATCTGGTCCACTTTCTTCCC+AGG | 0.364483 | 1.3:+47013032 | MS.gene073799:CDS |
| GAACTGGGATTTATTCTTGA+TGG | 0.380261 | 1.3:+47015375 | MS.gene073799:CDS |
| CGTGATGAGCTCTCTTCATC+TGG | 0.386900 | 1.3:+47013015 | MS.gene073799:CDS |
| TCTTAATCTTGATGATTATG+AGG | 0.408311 | 1.3:+47016572 | MS.gene073799:CDS |
| TGGGGAGGCTAAAGGTGAAC+TGG | 0.427253 | 1.3:+47015359 | MS.gene073799:CDS |
| TGGGTCTTCCTCGGTTGTCC+TGG | 0.431097 | 1.3:+47012916 | MS.gene073799:CDS |
| GGTTGTCCTGGCGTCGGTAA+AGG | 0.432318 | 1.3:+47012928 | MS.gene073799:CDS |
| GCAACTTCGGCCAAGATTCT+GGG | 0.442595 | 1.3:-47016542 | None:intergenic |
| CGGGAGGAATCCCAGAATCT+TGG | 0.448580 | 1.3:+47016532 | MS.gene073799:CDS |
| AATTGTAAAACAAGGTCAAT+TGG | 0.453568 | 1.3:+47015290 | MS.gene073799:CDS |
| ACTGCTTGCTTTATTGTTCG+AGG | 0.454143 | 1.3:-47015402 | None:intergenic |
| GGACGCGCGCGTGGAAAGGC+GGG | 0.456250 | 1.3:-47012785 | None:intergenic |
| AGCTTTGACATACAATTTGT+AGG | 0.464203 | 1.3:-47016040 | None:intergenic |
| GGCGTTCCTCACATCGCCAC+TGG | 0.467568 | 1.3:+47012982 | MS.gene073799:CDS |
| ATTGACATTAAGGCCGAGAA+TGG | 0.474266 | 1.3:+47015983 | MS.gene073799:CDS |
| CCTTCATCTCTTCCGTCGCA+AGG | 0.489419 | 1.3:+47012806 | MS.gene073799:CDS |
| CTGAAGCAGTTGTCAAAGAA+AGG | 0.490070 | 1.3:+47016083 | MS.gene073799:CDS |
| CACGTGCGGTGGGTCTTCCT+CGG | 0.490906 | 1.3:+47012907 | MS.gene073799:CDS |
| AATTCCAGGGATCCCATTCT+CGG | 0.494212 | 1.3:-47015996 | None:intergenic |
| AGCCGTCTTTCAAATCTCCT+TGG | 0.502058 | 1.3:+47012961 | MS.gene073799:CDS |
| GGAGGATTTGCAATCAGTGT+GGG | 0.507359 | 1.3:+47015939 | MS.gene073799:CDS |
| CTTGATGATGGGGAGGCTAA+AGG | 0.510077 | 1.3:+47015351 | MS.gene073799:CDS |
| CGTGGAAAGGCGGGTCGTGA+AGG | 0.518854 | 1.3:-47012776 | None:intergenic |
| CCTTGCGACGGAAGAGATGA+AGG | 0.520428 | 1.3:-47012806 | None:intergenic |
| TGCTTGAGAAATGCCTTGGC+AGG | 0.520462 | 1.3:+47015918 | MS.gene073799:CDS |
| TTTCAAACCTGGGAAGAAAG+TGG | 0.524167 | 1.3:-47013039 | None:intergenic |
| TATCAAAGAGACTTGATGAT+GGG | 0.527393 | 1.3:+47015340 | MS.gene073799:CDS |
| GCGGGTCGTGAAGGCCGCCA+TGG | 0.532458 | 1.3:-47012767 | None:intergenic |
| TGCTCAGGAAATATTGGAAG+GGG | 0.532562 | 1.3:+47015847 | MS.gene073799:intron |
| TTGACATTAAGGCCGAGAAT+GGG | 0.535202 | 1.3:+47015984 | MS.gene073799:CDS |
| ATTATTGGAGTTTAACCTGC+CGG | 0.535586 | 1.3:+47016512 | MS.gene073799:CDS |
| CAAGATTCTGGGATTCCTCC+CGG | 0.535852 | 1.3:-47016531 | None:intergenic |
| CTGCGGTAAAACTCCTCCAC+AGG | 0.544059 | 1.3:-47016480 | None:intergenic |
| TATGCTCAGGAAATATTGGA+AGG | 0.545400 | 1.3:+47015845 | MS.gene073799:intron |
| TGAAGGACGCGCGCGTGGAA+AGG | 0.546781 | 1.3:-47012789 | None:intergenic |
| GCTTCGAATATACAATGAAA+CGG | 0.548251 | 1.3:+47016105 | MS.gene073799:CDS |
| CGGGTCGTGAAGGCCGCCAT+GGG | 0.548319 | 1.3:-47012766 | None:intergenic |
| TGGCGCGTGGGAGTTGAGCT+CGG | 0.549856 | 1.3:-47012842 | None:intergenic |
| TTATCAAAGAGACTTGATGA+TGG | 0.553266 | 1.3:+47015339 | MS.gene073799:CDS |
| TTGACTTGGTTATCAATCTG+AGG | 0.557110 | 1.3:+47015879 | MS.gene073799:CDS |
| AGAGATGAAGGACGCGCGCG+TGG | 0.563381 | 1.3:-47012794 | None:intergenic |
| GGAGAGGTAGCGCCTTGCGA+CGG | 0.566154 | 1.3:-47012818 | None:intergenic |
| CAACAAGACGGAATGGCGCG+TGG | 0.568499 | 1.3:-47012855 | None:intergenic |
| CGCCAAGGAGATTTGAAAGA+CGG | 0.570050 | 1.3:-47012963 | None:intergenic |
| TTATTGGAGTTTAACCTGCC+GGG | 0.572349 | 1.3:+47016513 | MS.gene073799:CDS |
| GGGAGTTGAGCTCGGAGGAG+AGG | 0.572603 | 1.3:-47012834 | None:intergenic |
| AAGGCCGAGAATGGGATCCC+TGG | 0.573980 | 1.3:+47015992 | MS.gene073799:CDS |
| TTAAGAGCATGTAGCAACTT+CGG | 0.574130 | 1.3:-47016555 | None:intergenic |
| AGGACGCGCGCGTGGAAAGG+CGG | 0.575120 | 1.3:-47012786 | None:intergenic |
| TTCCTCGGTTGTCCTGGCGT+CGG | 0.575446 | 1.3:+47012922 | MS.gene073799:CDS |
| ATTCTGGGATTCCTCCCGGC+AGG | 0.575714 | 1.3:-47016527 | None:intergenic |
| TTGAGAAATGCCTTGGCAGG+AGG | 0.577558 | 1.3:+47015921 | MS.gene073799:CDS |
| ATGCTCAGGAAATATTGGAA+GGG | 0.580503 | 1.3:+47015846 | MS.gene073799:intron |
| AGGGGTAGCTGACATTGACT+TGG | 0.587799 | 1.3:+47015865 | MS.gene073799:CDS |
| AGAAGAACAGTCACGTGCGG+TGG | 0.588389 | 1.3:+47012896 | MS.gene073799:CDS |
| GTACTGCTTGAGAAATGCCT+TGG | 0.592269 | 1.3:+47015914 | MS.gene073799:CDS |
| TTCCGTCTTGTTGCTCCACG+TGG | 0.592404 | 1.3:+47012865 | MS.gene073799:CDS |
| GATTGCAAATCCTCCTGCCA+AGG | 0.594641 | 1.3:-47015931 | None:intergenic |
| TAGGTGCCTTTACCGACGCC+AGG | 0.599918 | 1.3:-47012934 | None:intergenic |
| TGGGATCCCTGGAATTGTCA+TGG | 0.601248 | 1.3:+47016003 | MS.gene073799:CDS |
| GAAGAACAGTCACGTGCGGT+GGG | 0.612148 | 1.3:+47012897 | MS.gene073799:CDS |
| ATTGCAGAGTCGGCCTGTGG+AGG | 0.614448 | 1.3:+47016467 | MS.gene073799:intron |
| AGGAGGATTTGCAATCAGTG+TGG | 0.620162 | 1.3:+47015938 | MS.gene073799:CDS |
| GGGGAGGCTAAAGGTGAACT+GGG | 0.621129 | 1.3:+47015360 | MS.gene073799:CDS |
| CTATCAGAAATTGTAAAACA+AGG | 0.622888 | 1.3:+47015282 | MS.gene073799:CDS |
| GAGGATTTGCAATCAGTGTG+GGG | 0.624942 | 1.3:+47015940 | MS.gene073799:CDS |
| AAAGAGACTTGATGATGGGG+AGG | 0.628690 | 1.3:+47015344 | MS.gene073799:CDS |
| ATGATTGCAGAGTCGGCCTG+TGG | 0.629533 | 1.3:+47016464 | MS.gene073799:intron |
| AGATCACCAGTGGCGATGTG+AGG | 0.631554 | 1.3:-47012988 | None:intergenic |
| ATCAAAGAGACTTGATGATG+GGG | 0.636165 | 1.3:+47015341 | MS.gene073799:CDS |
| AACAAGACGGAATGGCGCGT+GGG | 0.639200 | 1.3:-47012854 | None:intergenic |
| ATTTGAAAGACGGCTAGCGT+AGG | 0.640074 | 1.3:-47012953 | None:intergenic |
| CAATTTGTAGGTGGAAGAAG+CGG | 0.642392 | 1.3:-47016028 | None:intergenic |
| GCGGAGCCATGACAATTCCA+GGG | 0.644856 | 1.3:-47016009 | None:intergenic |
| CGTGGAGCAACAAGACGGAA+TGG | 0.654977 | 1.3:-47012862 | None:intergenic |
| TTCTTCTGATCTTCACCACG+TGG | 0.659321 | 1.3:-47012880 | None:intergenic |
| AGGATTTGCAATCAGTGTGG+GGG | 0.661390 | 1.3:+47015941 | MS.gene073799:CDS |
| CACCACGTGGAGCAACAAGA+CGG | 0.662591 | 1.3:-47012867 | None:intergenic |
| TTTGACATACAATTTGTAGG+TGG | 0.663193 | 1.3:-47016037 | None:intergenic |
| ATCACGAACGAGATCACCAG+TGG | 0.681112 | 1.3:-47012998 | None:intergenic |
| TTGGAGTTTAACCTGCCGGG+AGG | 0.683112 | 1.3:+47016516 | MS.gene073799:CDS |
| ATCAGAAGAACAGTCACGTG+CGG | 0.685783 | 1.3:+47012893 | MS.gene073799:CDS |
| TGGCGATGTGAGGAACGCCA+AGG | 0.686824 | 1.3:-47012978 | None:intergenic |
| TACCGACGCCAGGACAACCG+AGG | 0.695680 | 1.3:-47012924 | None:intergenic |
| CGCGTGGGAGTTGAGCTCGG+AGG | 0.738854 | 1.3:-47012839 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAAATTAATTTTTTT+TGG | + | chr1.3:47013448-47013467 | MS.gene073799:intron | 0.0% |
| !! | AAATTAAAAGAATTAAAACT+TGG | - | chr1.3:47014257-47014276 | None:intergenic | 10.0% |
| !!! | ACATTTATTTTTATTATGAT+GGG | + | chr1.3:47016232-47016251 | MS.gene073799:intron | 10.0% |
| !!! | ATTTTTTTCATTTTAAACAA+AGG | + | chr1.3:47013909-47013928 | MS.gene073799:intron | 10.0% |
| !!! | TACATTTATTTTTATTATGA+TGG | + | chr1.3:47016231-47016250 | MS.gene073799:intron | 10.0% |
| !! | AGTAGATTAAGTATTTATTA+AGG | - | chr1.3:47014648-47014667 | None:intergenic | 15.0% |
| !! | ATTAAGTATTTATTAAGGAA+CGG | - | chr1.3:47014643-47014662 | None:intergenic | 15.0% |
| !! | CAAATTTATAAAAACCTAAT+TGG | + | chr1.3:47014137-47014156 | MS.gene073799:intron | 15.0% |
| !! | CGATATTCATAAAATTTATT+TGG | - | chr1.3:47015005-47015024 | None:intergenic | 15.0% |
| !! | TACAAATCAAAACATTAAAA+AGG | - | chr1.3:47015037-47015056 | None:intergenic | 15.0% |
| !! | TATAACAAATAGTATAGATA+TGG | - | chr1.3:47014521-47014540 | None:intergenic | 15.0% |
| !!! | ATATATTTTGCAAACAAAAT+AGG | - | chr1.3:47015478-47015497 | None:intergenic | 15.0% |
| !!! | GTTATATAAGTTAGTTTAAT+TGG | + | chr1.3:47013515-47013534 | MS.gene073799:intron | 15.0% |
| !!! | TATATTTTGCAAACAAAATA+GGG | - | chr1.3:47015477-47015496 | None:intergenic | 15.0% |
| !!! | TATTTAAAATTGACATTTTC+CGG | + | chr1.3:47014613-47014632 | MS.gene073799:intron | 15.0% |
| !!! | TTTGTTCATTTATTTTTCAT+TGG | - | chr1.3:47015564-47015583 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTAAATTCCTG+AGG | + | chr1.3:47015674-47015693 | MS.gene073799:intron | 15.0% |
| !! | AAATTAAAGGAACCTAAATA+AGG | - | chr1.3:47015612-47015631 | None:intergenic | 20.0% |
| !! | AATAGTATAGATATGGTTAA+AGG | - | chr1.3:47014514-47014533 | None:intergenic | 20.0% |
| !!! | ATAAGTTTGCTTGTTTAAAA+AGG | - | chr1.3:47015776-47015795 | None:intergenic | 20.0% |
| !!! | ATATTTTGCAAACAAAATAG+GGG | - | chr1.3:47015476-47015495 | None:intergenic | 20.0% |
| !!! | ATGTCAATTTTAAATACATG+CGG | - | chr1.3:47014609-47014628 | None:intergenic | 20.0% |
| !!! | TATAAGTTAGTTTAATTGGT+AGG | + | chr1.3:47013519-47013538 | MS.gene073799:intron | 20.0% |
| !!! | TTTTAATTTTGAGCCAATTA+GGG | + | chr1.3:47014268-47014287 | MS.gene073799:intron | 20.0% |
| ! | AATTGTAAAACAAGGTCAAT+TGG | + | chr1.3:47015290-47015309 | MS.gene073799:CDS | 25.0% |
| ! | AGCTAGTAAGTCTTTAAATT+TGG | + | chr1.3:47014956-47014975 | MS.gene073799:intron | 25.0% |
| ! | ATATAGCCATTTGATATCTA+GGG | - | chr1.3:47014335-47014354 | None:intergenic | 25.0% |
| ! | ATTGATATAAAAAGAACACC+AGG | - | chr1.3:47015705-47015724 | None:intergenic | 25.0% |
| ! | CTAGGAAGTTGTATAATTAA+AGG | + | chr1.3:47014858-47014877 | MS.gene073799:intron | 25.0% |
| ! | CTATCAGAAATTGTAAAACA+AGG | + | chr1.3:47015282-47015301 | MS.gene073799:CDS | 25.0% |
| ! | GTGGTAGTTATAAAATTATG+TGG | + | chr1.3:47013694-47013713 | MS.gene073799:intron | 25.0% |
| ! | TAATACAAAGTGAGATATGT+TGG | - | chr1.3:47013593-47013612 | None:intergenic | 25.0% |
| !! | TAGTACATAACAGATTTTCA+AGG | - | chr1.3:47015806-47015825 | None:intergenic | 25.0% |
| !! | TATTTTCCAATTAGCTAAAC+AGG | - | chr1.3:47014036-47014055 | None:intergenic | 25.0% |
| !! | TCATGAATGATATTTGCTTT+TGG | + | chr1.3:47013846-47013865 | MS.gene073799:intron | 25.0% |
| !! | TCTTAATCTTGATGATTATG+AGG | + | chr1.3:47016572-47016591 | MS.gene073799:CDS | 25.0% |
| !! | TTTTTATGCTCAGGAAATAT+TGG | + | chr1.3:47015841-47015860 | MS.gene073799:intron | 25.0% |
| !!! | ATGAATGATATTTGCTTTTG+GGG | + | chr1.3:47013848-47013867 | MS.gene073799:intron | 25.0% |
| !!! | ATGTCTTTTTTAACTGGTTT+AGG | + | chr1.3:47016428-47016447 | MS.gene073799:intron | 25.0% |
| !!! | ATGTTCATGTCTTTTTTAAC+TGG | + | chr1.3:47016422-47016441 | MS.gene073799:intron | 25.0% |
| !!! | CATGAATGATATTTGCTTTT+GGG | + | chr1.3:47013847-47013866 | MS.gene073799:intron | 25.0% |
| !!! | CTTTTAATTTTGAGCCAATT+AGG | + | chr1.3:47014267-47014286 | MS.gene073799:intron | 25.0% |
| !!! | GTTGATGATGAATATGATTA+TGG | - | chr1.3:47016149-47016168 | None:intergenic | 25.0% |
| !!! | TCATTGGTTATTGCATTTTT+CGG | - | chr1.3:47015548-47015567 | None:intergenic | 25.0% |
| AATCATAGTACTCCAGTAAA+GGG | - | chr1.3:47015201-47015220 | None:intergenic | 30.0% | |
| ACGAAGTTTAGAAAACATCA+CGG | - | chr1.3:47015752-47015771 | None:intergenic | 30.0% | |
| CAGTGAGTATATCTTCAATT+TGG | + | chr1.3:47015421-47015440 | MS.gene073799:intron | 30.0% | |
| CATATAGCCATTTGATATCT+AGG | - | chr1.3:47014336-47014355 | None:intergenic | 30.0% | |
| CATGATTATTATCCAAGTGA+TGG | + | chr1.3:47013286-47013305 | MS.gene073799:intron | 30.0% | |
| CCTGAGCATAAAAAAAAGAA+AGG | - | chr1.3:47015835-47015854 | None:intergenic | 30.0% | |
| CTAAGTAATCCTTACAAAGT+CGG | - | chr1.3:47014115-47014134 | None:intergenic | 30.0% | |
| CTAGATATCAAATGGCTATA+TGG | + | chr1.3:47014334-47014353 | MS.gene073799:intron | 30.0% | |
| CTGATTAGGTAGGAAATTAA+AGG | - | chr1.3:47015625-47015644 | None:intergenic | 30.0% | |
| GATCTTTAAGCTACTAAGAA+CGG | - | chr1.3:47015091-47015110 | None:intergenic | 30.0% | |
| GATTCATGAATATGATACTC+CGG | - | chr1.3:47013828-47013847 | None:intergenic | 30.0% | |
| GCTTCGAATATACAATGAAA+CGG | + | chr1.3:47016105-47016124 | MS.gene073799:CDS | 30.0% | |
| GGAGTAATAACAATCAATCT+AGG | + | chr1.3:47014840-47014859 | MS.gene073799:intron | 30.0% | |
| TAATCATAGTACTCCAGTAA+AGG | - | chr1.3:47015202-47015221 | None:intergenic | 30.0% | |
| TTATCAAAGAGACTTGATGA+TGG | + | chr1.3:47015339-47015358 | MS.gene073799:CDS | 30.0% | |
| TTTCATGTGTATCTGTATCT+TGG | + | chr1.3:47013558-47013577 | MS.gene073799:intron | 30.0% | |
| TTTCTATATGATTGCAGAGT+CGG | + | chr1.3:47016457-47016476 | MS.gene073799:intron | 30.0% | |
| TTTGACATACAATTTGTAGG+TGG | - | chr1.3:47016040-47016059 | None:intergenic | 30.0% | |
| ! | AAAACTTGATAGCTCATGTA+TGG | + | chr1.3:47014160-47014179 | MS.gene073799:intron | 30.0% |
| ! | AAGAAGAAGTTTTCAAACCT+GGG | - | chr1.3:47013052-47013071 | None:intergenic | 30.0% |
| ! | AGCTATCAAGTTTTCCAATT+AGG | - | chr1.3:47014154-47014173 | None:intergenic | 30.0% |
| ! | AGCTTTGACATACAATTTGT+AGG | - | chr1.3:47016043-47016062 | None:intergenic | 30.0% |
| ! | GATAATAAGGCACCTTATTT+AGG | + | chr1.3:47015597-47015616 | MS.gene073799:intron | 30.0% |
| ! | GCAAAGGACAATTTAGTTTA+CGG | - | chr1.3:47013789-47013808 | None:intergenic | 30.0% |
| ! | TATCAAAGAGACTTGATGAT+GGG | + | chr1.3:47015340-47015359 | MS.gene073799:CDS | 30.0% |
| ! | TTAAAGACTTACTAGCTTGA+AGG | - | chr1.3:47014953-47014972 | None:intergenic | 30.0% |
| ! | TTTAGGATGTTTACCCTAAT+TGG | - | chr1.3:47014284-47014303 | None:intergenic | 30.0% |
| ! | TTTCTAATTTTGCGTGTGAT+AGG | - | chr1.3:47013150-47013169 | None:intergenic | 30.0% |
| !! | ATGAACAAATTTTGCCGATT+TGG | + | chr1.3:47015575-47015594 | MS.gene073799:intron | 30.0% |
| !! | CATTGGTTATTGCATTTTTC+GGG | - | chr1.3:47015547-47015566 | None:intergenic | 30.0% |
| !! | TGAATGATATTTGCTTTTGG+GGG | + | chr1.3:47013849-47013868 | MS.gene073799:intron | 30.0% |
| !! | TTTGCTTTGGAAATCATTGT+AGG | + | chr1.3:47013474-47013493 | MS.gene073799:intron | 30.0% |
| !!! | CAATGTGTATCCATTTTTTG+CGG | + | chr1.3:47015721-47015740 | MS.gene073799:intron | 30.0% |
| !!! | CCTTTCTTTTTTTTATGCTC+AGG | + | chr1.3:47015832-47015851 | MS.gene073799:intron | 30.0% |
| !!! | GTTTTGATTTGTAAGTGCTT+AGG | + | chr1.3:47015044-47015063 | MS.gene073799:intron | 30.0% |
| !!! | TTTTGCCGATTTGGATAATA+AGG | + | chr1.3:47015584-47015603 | MS.gene073799:intron | 30.0% |
| !!! | TTTTTTTTGGAGCTTTGCTT+TGG | + | chr1.3:47013461-47013480 | MS.gene073799:intron | 30.0% |
| AAAACCAAACTGTCCTCTAA+TGG | + | chr1.3:47014301-47014320 | MS.gene073799:intron | 35.0% | |
| AAAGATCAGCTGTGTGAAAA+TGG | + | chr1.3:47015104-47015123 | MS.gene073799:intron | 35.0% | |
| AAAGGGACAACTAATAGAAC+AGG | - | chr1.3:47015184-47015203 | None:intergenic | 35.0% | |
| AAGTGTATGTCACTCACTAT+AGG | + | chr1.3:47015446-47015465 | MS.gene073799:intron | 35.0% | |
| ACTGTATTTCTTGCGTTGTT+GGG | + | chr1.3:47014914-47014933 | MS.gene073799:intron | 35.0% | |
| AGTGTTCTTCATTGTAGTAG+TGG | + | chr1.3:47013675-47013694 | MS.gene073799:intron | 35.0% | |
| ATACCTCCCTAGATATCAAA+TGG | + | chr1.3:47014326-47014345 | MS.gene073799:intron | 35.0% | |
| ATCTAACTTAAACCTTGAGC+TGG | + | chr1.3:47014417-47014436 | MS.gene073799:intron | 35.0% | |
| ATGAACGAGTCGAAATTCAA+AGG | - | chr1.3:47013095-47013114 | None:intergenic | 35.0% | |
| ATGACAAATACGAGCTGATT+AGG | - | chr1.3:47015639-47015658 | None:intergenic | 35.0% | |
| ATGCTCAGGAAATATTGGAA+GGG | + | chr1.3:47015846-47015865 | MS.gene073799:intron | 35.0% | |
| ATGGCTATATGGTAGTTGTT+TGG | + | chr1.3:47014345-47014364 | MS.gene073799:intron | 35.0% | |
| ATTATTGGAGTTTAACCTGC+CGG | + | chr1.3:47016512-47016531 | MS.gene073799:CDS | 35.0% | |
| CGAAGTTTAGAAAACATCAC+GGG | - | chr1.3:47015751-47015770 | None:intergenic | 35.0% | |
| CGACTTTGTAAGGATTACTT+AGG | + | chr1.3:47014113-47014132 | MS.gene073799:intron | 35.0% | |
| CGTTGCTTCTATTGACATTA+AGG | + | chr1.3:47015973-47015992 | MS.gene073799:CDS | 35.0% | |
| CTACTACAATGAAGAACACT+AGG | - | chr1.3:47013675-47013694 | None:intergenic | 35.0% | |
| GAACTGGGATTTATTCTTGA+TGG | + | chr1.3:47015375-47015394 | MS.gene073799:CDS | 35.0% | |
| GTATAGCAACTACTACTTGT+TGG | + | chr1.3:47013618-47013637 | MS.gene073799:intron | 35.0% | |
| TATGCTCAGGAAATATTGGA+AGG | + | chr1.3:47015845-47015864 | MS.gene073799:intron | 35.0% | |
| TCACGTGCGTTTATATAAGT+GGG | + | chr1.3:47014064-47014083 | MS.gene073799:intron | 35.0% | |
| TCTATTAGTTGTCCCTTTAC+TGG | + | chr1.3:47015186-47015205 | MS.gene073799:intron | 35.0% | |
| TCTTGATTATAGCACTTCAG+AGG | + | chr1.3:47016266-47016285 | MS.gene073799:intron | 35.0% | |
| TGTGTTCTCTTGATTGATGT+TGG | + | chr1.3:47014676-47014695 | MS.gene073799:intron | 35.0% | |
| TGTTCTTGTCATCTGTTAGT+CGG | + | chr1.3:47014560-47014579 | MS.gene073799:intron | 35.0% | |
| TTTATTAAGGAACGGAAAGC+CGG | - | chr1.3:47014635-47014654 | None:intergenic | 35.0% | |
| ! | AGGTGCCTTATTATCCAAAT+CGG | - | chr1.3:47015592-47015611 | None:intergenic | 35.0% |
| ! | AGGTTTTCAATTTGGTCATG+TGG | + | chr1.3:47014222-47014241 | MS.gene073799:intron | 35.0% |
| ! | GAAGAAGAAGTTTTCAAACC+TGG | - | chr1.3:47013053-47013072 | None:intergenic | 35.0% |
| ! | GGTTTTCAATTTGGTCATGT+GGG | + | chr1.3:47014223-47014242 | MS.gene073799:intron | 35.0% |
| ! | GTGTTTCTGATGCACTAATT+TGG | + | chr1.3:47014446-47014465 | MS.gene073799:intron | 35.0% |
| ! | TAGGAGGAAGGTTTTCAATT+TGG | + | chr1.3:47014214-47014233 | MS.gene073799:intron | 35.0% |
| ! | TTAAGAGCATGTAGCAACTT+CGG | - | chr1.3:47016558-47016577 | None:intergenic | 35.0% |
| ! | TTAAGCTTAGTTCTCGTACA+CGG | + | chr1.3:47013223-47013242 | MS.gene073799:intron | 35.0% |
| ! | TTCTCAAGCAGTACATTTTC+TGG | - | chr1.3:47015908-47015927 | None:intergenic | 35.0% |
| ! | TTGAATTTCGACTCGTTCAT+TGG | + | chr1.3:47013095-47013114 | MS.gene073799:intron | 35.0% |
| ! | TTGATAGCTCATGTATGGTT+AGG | + | chr1.3:47014165-47014184 | MS.gene073799:intron | 35.0% |
| !! | ATCAAAGAGACTTGATGATG+GGG | + | chr1.3:47015341-47015360 | MS.gene073799:CDS | 35.0% |
| !! | GTCGTTTTGTGAGTGATTTT+TGG | + | chr1.3:47013647-47013666 | MS.gene073799:intron | 35.0% |
| !! | TTGACTTGGTTATCAATCTG+AGG | + | chr1.3:47015879-47015898 | MS.gene073799:CDS | 35.0% |
| !!! | TTAGAGGACAGTTTGGTTTT+AGG | - | chr1.3:47014301-47014320 | None:intergenic | 35.0% |
| AAACACTCATTTCCAGCTCA+AGG | - | chr1.3:47014432-47014451 | None:intergenic | 40.0% | |
| AATCGAGACAATTTACCACC+AGG | + | chr1.3:47013962-47013981 | MS.gene073799:intron | 40.0% | |
| ATGAATATGATACTCCGGCT+TGG | - | chr1.3:47013823-47013842 | None:intergenic | 40.0% | |
| ATGTCCATTAGAGGACAGTT+TGG | - | chr1.3:47014308-47014327 | None:intergenic | 40.0% | |
| ATTGACATTAAGGCCGAGAA+TGG | + | chr1.3:47015983-47016002 | MS.gene073799:CDS | 40.0% | |
| ATTGTCCTTTGCAGAGATAG+TGG | + | chr1.3:47013797-47013816 | MS.gene073799:intron | 40.0% | |
| CAAATACGAGCTGATTAGGT+AGG | - | chr1.3:47015635-47015654 | None:intergenic | 40.0% | |
| CAATTTGTAGGTGGAAGAAG+CGG | - | chr1.3:47016031-47016050 | None:intergenic | 40.0% | |
| CTGAAGCAGTTGTCAAAGAA+AGG | + | chr1.3:47016083-47016102 | MS.gene073799:CDS | 40.0% | |
| CTTACTTAACTCCTGAACTC+TGG | + | chr1.3:47013383-47013402 | MS.gene073799:intron | 40.0% | |
| GACTGTATTTCTTGCGTTGT+TGG | + | chr1.3:47014913-47014932 | MS.gene073799:intron | 40.0% | |
| GTCACGTGCGTTTATATAAG+TGG | + | chr1.3:47014063-47014082 | MS.gene073799:intron | 40.0% | |
| TAGCCATTTGATATCTAGGG+AGG | - | chr1.3:47014332-47014351 | None:intergenic | 40.0% | |
| TATTTAGTAAGCACTAGCCC+AGG | + | chr1.3:47014802-47014821 | MS.gene073799:intron | 40.0% | |
| TGAAATCCATGTGTTTAGCC+AGG | + | chr1.3:47014191-47014210 | MS.gene073799:intron | 40.0% | |
| TGCTCAGGAAATATTGGAAG+GGG | + | chr1.3:47015847-47015866 | MS.gene073799:intron | 40.0% | |
| TGTTAACCCTCAAGATCCTA+GGG | - | chr1.3:47013425-47013444 | None:intergenic | 40.0% | |
| TTATTGGAGTTTAACCTGCC+GGG | + | chr1.3:47016513-47016532 | MS.gene073799:CDS | 40.0% | |
| TTCTGCTCTCTGATGTGTAA+TGG | + | chr1.3:47015245-47015264 | MS.gene073799:intron | 40.0% | |
| TTGACATTAAGGCCGAGAAT+GGG | + | chr1.3:47015984-47016003 | MS.gene073799:CDS | 40.0% | |
| TTTCAAACCTGGGAAGAAAG+TGG | - | chr1.3:47013042-47013061 | None:intergenic | 40.0% | |
| ! | ACTGCTTGCTTTATTGTTCG+AGG | - | chr1.3:47015405-47015424 | None:intergenic | 40.0% |
| ! | CCAATAATTTTCCTCTGCTG+CGG | - | chr1.3:47016500-47016519 | None:intergenic | 40.0% |
| ! | CCTAGAGTATTCAACTTCCT+GGG | - | chr1.3:47014822-47014841 | None:intergenic | 40.0% |
| ! | TAAGCTTAGTTCTCGTACAC+GGG | + | chr1.3:47013224-47013243 | MS.gene073799:intron | 40.0% |
| ! | TCCTAGAGTATTCAACTTCC+TGG | - | chr1.3:47014823-47014842 | None:intergenic | 40.0% |
| ! | TGTCACTTATAGCACTTCAG+AGG | + | chr1.3:47016174-47016193 | MS.gene073799:intron | 40.0% |
| AATTCCAGGGATCCCATTCT+CGG | - | chr1.3:47015999-47016018 | None:intergenic | 45.0% | |
| ACATCAGAGAGCAGAAGAGT+TGG | - | chr1.3:47015241-47015260 | None:intergenic | 45.0% | |
| AGCCGTCTTTCAAATCTCCT+TGG | + | chr1.3:47012961-47012980 | MS.gene073799:CDS | 45.0% | |
| AGGAGGATTTGCAATCAGTG+TGG | + | chr1.3:47015938-47015957 | MS.gene073799:CDS | 45.0% | |
| AGGATTTGCAATCAGTGTGG+GGG | + | chr1.3:47015941-47015960 | MS.gene073799:CDS | 45.0% | |
| ATCAGAAGAACAGTCACGTG+CGG | + | chr1.3:47012893-47012912 | MS.gene073799:CDS | 45.0% | |
| ATCCATGTGTTTAGCCAGGT+AGG | + | chr1.3:47014195-47014214 | MS.gene073799:intron | 45.0% | |
| ATTTGAAAGACGGCTAGCGT+AGG | - | chr1.3:47012956-47012975 | None:intergenic | 45.0% | |
| CACGCAAGGATGAATTGTTC+GGG | + | chr1.3:47013331-47013350 | MS.gene073799:intron | 45.0% | |
| CCACGCAAGGATGAATTGTT+CGG | + | chr1.3:47013330-47013349 | MS.gene073799:intron | 45.0% | |
| CCCAGGAAGTTGAATACTCT+AGG | + | chr1.3:47014819-47014838 | MS.gene073799:intron | 45.0% | |
| CCGCAGCAGAGGAAAATTAT+TGG | + | chr1.3:47016497-47016516 | MS.gene073799:CDS | 45.0% | |
| CGCCAAGGAGATTTGAAAGA+CGG | - | chr1.3:47012966-47012985 | None:intergenic | 45.0% | |
| GAGGATTTGCAATCAGTGTG+GGG | + | chr1.3:47015940-47015959 | MS.gene073799:CDS | 45.0% | |
| GCTCTCTGATGTGTAATGGT+TGG | + | chr1.3:47015249-47015268 | MS.gene073799:intron | 45.0% | |
| GGAGGATTTGCAATCAGTGT+GGG | + | chr1.3:47015939-47015958 | MS.gene073799:CDS | 45.0% | |
| GGCAAGCCTGTTTAGCTAAT+TGG | + | chr1.3:47014027-47014046 | MS.gene073799:intron | 45.0% | |
| GTACTGCTTGAGAAATGCCT+TGG | + | chr1.3:47015914-47015933 | MS.gene073799:CDS | 45.0% | |
| GTGTTAACCCTCAAGATCCT+AGG | - | chr1.3:47013426-47013445 | None:intergenic | 45.0% | |
| GTTAACCCTCAAGATCCTAG+GGG | - | chr1.3:47013424-47013443 | None:intergenic | 45.0% | |
| TAAATTCCTGAGGTCTCACC+TGG | + | chr1.3:47015684-47015703 | MS.gene073799:intron | 45.0% | |
| TATAAACGCACGTGACACTC+AGG | - | chr1.3:47014059-47014078 | None:intergenic | 45.0% | |
| TCCTGAACTCTGGACTACTA+GGG | + | chr1.3:47013393-47013412 | MS.gene073799:intron | 45.0% | |
| TTCTTCTGATCTTCACCACG+TGG | - | chr1.3:47012883-47012902 | None:intergenic | 45.0% | |
| TTGAAAACCTTCCTCCTACC+TGG | - | chr1.3:47014212-47014231 | None:intergenic | 45.0% | |
| ! | TAGGGAGGTATGTCCATTAG+AGG | - | chr1.3:47014317-47014336 | None:intergenic | 45.0% |
| !! | AAAGAGACTTGATGATGGGG+AGG | + | chr1.3:47015344-47015363 | MS.gene073799:CDS | 45.0% |
| ACCACTTGAGCTCCATCACT+TGG | - | chr1.3:47013301-47013320 | None:intergenic | 50.0% | |
| AGCAACTTCGGCCAAGATTC+TGG | - | chr1.3:47016546-47016565 | None:intergenic | 50.0% | |
| ATCACGAACGAGATCACCAG+TGG | - | chr1.3:47013001-47013020 | None:intergenic | 50.0% | |
| ATCTGGTCCACTTTCTTCCC+AGG | + | chr1.3:47013032-47013051 | MS.gene073799:CDS | 50.0% | |
| CACGGGACAACCGCAAAAAA+TGG | - | chr1.3:47015734-47015753 | None:intergenic | 50.0% | |
| CATGTGTTTAGCCAGGTAGG+AGG | + | chr1.3:47014198-47014217 | MS.gene073799:intron | 50.0% | |
| CCGAACAATTCATCCTTGCG+TGG | - | chr1.3:47013333-47013352 | None:intergenic | 50.0% | |
| CGGCACACGTGTAAAGTGAA+GGG | - | chr1.3:47014095-47014114 | None:intergenic | 50.0% | |
| CGTGATGAGCTCTCTTCATC+TGG | + | chr1.3:47013015-47013034 | MS.gene073799:CDS | 50.0% | |
| CTCCTACCTGGCTAAACACA+TGG | - | chr1.3:47014200-47014219 | None:intergenic | 50.0% | |
| CTCCTGAACTCTGGACTACT+AGG | + | chr1.3:47013392-47013411 | MS.gene073799:intron | 50.0% | |
| CTTGGCCACTATCTCTGCAA+AGG | - | chr1.3:47013805-47013824 | None:intergenic | 50.0% | |
| GATTGCAAATCCTCCTGCCA+AGG | - | chr1.3:47015934-47015953 | None:intergenic | 50.0% | |
| GCAACTTCGGCCAAGATTCT+GGG | - | chr1.3:47016545-47016564 | None:intergenic | 50.0% | |
| TCGGCACACGTGTAAAGTGA+AGG | - | chr1.3:47014096-47014115 | None:intergenic | 50.0% | |
| TGCTTGAGAAATGCCTTGGC+AGG | + | chr1.3:47015918-47015937 | MS.gene073799:CDS | 50.0% | |
| TGGGATCCCTGGAATTGTCA+TGG | + | chr1.3:47016003-47016022 | MS.gene073799:CDS | 50.0% | |
| TGGTTATTGAGCTCCACGCA+AGG | + | chr1.3:47013317-47013336 | MS.gene073799:intron | 50.0% | |
| TGTTTAGCCAGGTAGGAGGA+AGG | + | chr1.3:47014202-47014221 | MS.gene073799:intron | 50.0% | |
| TTGAGAAATGCCTTGGCAGG+AGG | + | chr1.3:47015921-47015940 | MS.gene073799:CDS | 50.0% | |
| ! | AGGGGTAGCTGACATTGACT+TGG | + | chr1.3:47015865-47015884 | MS.gene073799:CDS | 50.0% |
| ! | TCCAAGTGATGGAGCTCAAG+TGG | + | chr1.3:47013297-47013316 | MS.gene073799:intron | 50.0% |
| !! | ACACGTGTGCCGACTTTGTA+AGG | + | chr1.3:47014103-47014122 | MS.gene073799:intron | 50.0% |
| !! | CAAGATTCTGGGATTCCTCC+CGG | - | chr1.3:47016534-47016553 | None:intergenic | 50.0% |
| !! | CTTGATGATGGGGAGGCTAA+AGG | + | chr1.3:47015351-47015370 | MS.gene073799:CDS | 50.0% |
| !! | GAGCAGAAGAGTTGGTGCAA+TGG | - | chr1.3:47015233-47015252 | None:intergenic | 50.0% |
| AACAAGACGGAATGGCGCGT+GGG | - | chr1.3:47012857-47012876 | None:intergenic | 55.0% | |
| ACCCTCAAGATCCTAGGGGA+AGG | - | chr1.3:47013420-47013439 | None:intergenic | 55.0% | |
| AGAACACCAGGTGAGACCTC+AGG | - | chr1.3:47015693-47015712 | None:intergenic | 55.0% | |
| AGAAGAACAGTCACGTGCGG+TGG | + | chr1.3:47012896-47012915 | MS.gene073799:CDS | 55.0% | |
| AGATCACCAGTGGCGATGTG+AGG | - | chr1.3:47012991-47013010 | None:intergenic | 55.0% | |
| AGCGGAGCCATGACAATTCC+AGG | - | chr1.3:47016013-47016032 | None:intergenic | 55.0% | |
| ATGATTGCAGAGTCGGCCTG+TGG | + | chr1.3:47016464-47016483 | MS.gene073799:intron | 55.0% | |
| CACCACGTGGAGCAACAAGA+CGG | - | chr1.3:47012870-47012889 | None:intergenic | 55.0% | |
| CCCTCAAGATCCTAGGGGAA+GGG | - | chr1.3:47013419-47013438 | None:intergenic | 55.0% | |
| CCCTTCCCCTAGGATCTTGA+GGG | + | chr1.3:47013416-47013435 | MS.gene073799:intron | 55.0% | |
| CCTTCATCTCTTCCGTCGCA+AGG | + | chr1.3:47012806-47012825 | MS.gene073799:CDS | 55.0% | |
| CCTTGCGACGGAAGAGATGA+AGG | - | chr1.3:47012809-47012828 | None:intergenic | 55.0% | |
| CGGGAGGAATCCCAGAATCT+TGG | + | chr1.3:47016532-47016551 | MS.gene073799:CDS | 55.0% | |
| CGTGGAGCAACAAGACGGAA+TGG | - | chr1.3:47012865-47012884 | None:intergenic | 55.0% | |
| CTGCGGTAAAACTCCTCCAC+AGG | - | chr1.3:47016483-47016502 | None:intergenic | 55.0% | |
| GAAGAACAGTCACGTGCGGT+GGG | + | chr1.3:47012897-47012916 | MS.gene073799:CDS | 55.0% | |
| GCCCTAGTAGTCCAGAGTTC+AGG | - | chr1.3:47013397-47013416 | None:intergenic | 55.0% | |
| GCGGAGCCATGACAATTCCA+GGG | - | chr1.3:47016012-47016031 | None:intergenic | 55.0% | |
| GGGGAGGCTAAAGGTGAACT+GGG | + | chr1.3:47015360-47015379 | MS.gene073799:CDS | 55.0% | |
| TCCCCAATGCACGACAGGTT+GGG | + | chr1.3:47014006-47014025 | MS.gene073799:intron | 55.0% | |
| TGCCCAACCTGTCGTGCATT+GGG | - | chr1.3:47014011-47014030 | None:intergenic | 55.0% | |
| TGGGGAGGCTAAAGGTGAAC+TGG | + | chr1.3:47015359-47015378 | MS.gene073799:CDS | 55.0% | |
| TTGCCCAACCTGTCGTGCAT+TGG | - | chr1.3:47014012-47014031 | None:intergenic | 55.0% | |
| TTGGAGTTTAACCTGCCGGG+AGG | + | chr1.3:47016516-47016535 | MS.gene073799:CDS | 55.0% | |
| ! | GAGGAGTTTTACCGCAGCAG+AGG | + | chr1.3:47016486-47016505 | MS.gene073799:CDS | 55.0% |
| ! | TGCAGAGATAGTGGCCAAGC+CGG | + | chr1.3:47013806-47013825 | MS.gene073799:intron | 55.0% |
| ! | TTCCGTCTTGTTGCTCCACG+TGG | + | chr1.3:47012865-47012884 | MS.gene073799:CDS | 55.0% |
| AAGGCCGAGAATGGGATCCC+TGG | + | chr1.3:47015992-47016011 | MS.gene073799:CDS | 60.0% | |
| ACTACTAGGGCCCTTCCCCT+AGG | + | chr1.3:47013406-47013425 | MS.gene073799:intron | 60.0% | |
| ATTGCAGAGTCGGCCTGTGG+AGG | + | chr1.3:47016467-47016486 | MS.gene073799:intron | 60.0% | |
| CAACAAGACGGAATGGCGCG+TGG | - | chr1.3:47012858-47012877 | None:intergenic | 60.0% | |
| CAGTGTCCCCAATGCACGAC+AGG | + | chr1.3:47014001-47014020 | MS.gene073799:intron | 60.0% | |
| CTGTCGTGCATTGGGGACAC+TGG | - | chr1.3:47014003-47014022 | None:intergenic | 60.0% | |
| GCCCAACCTGTCGTGCATTG+GGG | - | chr1.3:47014010-47014029 | None:intergenic | 60.0% | |
| GCCCTTCCCCTAGGATCTTG+AGG | + | chr1.3:47013415-47013434 | MS.gene073799:intron | 60.0% | |
| GGGACACTGGCAAGCACAGT+CGG | - | chr1.3:47013990-47014009 | None:intergenic | 60.0% | |
| GTCCCCAATGCACGACAGGT+TGG | + | chr1.3:47014005-47014024 | MS.gene073799:intron | 60.0% | |
| TAGGTGCCTTTACCGACGCC+AGG | - | chr1.3:47012937-47012956 | None:intergenic | 60.0% | |
| TGGCGATGTGAGGAACGCCA+AGG | - | chr1.3:47012981-47013000 | None:intergenic | 60.0% | |
| TGGGTCTTCCTCGGTTGTCC+TGG | + | chr1.3:47012916-47012935 | MS.gene073799:CDS | 60.0% | |
| TTCCTCGGTTGTCCTGGCGT+CGG | + | chr1.3:47012922-47012941 | MS.gene073799:CDS | 60.0% | |
| !! | ATTCTGGGATTCCTCCCGGC+AGG | - | chr1.3:47016530-47016549 | None:intergenic | 60.0% |
| !! | GGTTGTCCTGGCGTCGGTAA+AGG | + | chr1.3:47012928-47012947 | MS.gene073799:CDS | 60.0% |
| AGAGATGAAGGACGCGCGCG+TGG | - | chr1.3:47012797-47012816 | None:intergenic | 65.0% | |
| CACGTGCGGTGGGTCTTCCT+CGG | + | chr1.3:47012907-47012926 | MS.gene073799:CDS | 65.0% | |
| CGTGGAAAGGCGGGTCGTGA+AGG | - | chr1.3:47012779-47012798 | None:intergenic | 65.0% | |
| GGAGAGGTAGCGCCTTGCGA+CGG | - | chr1.3:47012821-47012840 | None:intergenic | 65.0% | |
| GGCGTTCCTCACATCGCCAC+TGG | + | chr1.3:47012982-47013001 | MS.gene073799:CDS | 65.0% | |
| GGGAGTTGAGCTCGGAGGAG+AGG | - | chr1.3:47012837-47012856 | None:intergenic | 65.0% | |
| TACCGACGCCAGGACAACCG+AGG | - | chr1.3:47012927-47012946 | None:intergenic | 65.0% | |
| TGAAGGACGCGCGCGTGGAA+AGG | - | chr1.3:47012792-47012811 | None:intergenic | 65.0% | |
| TGGCGCGTGGGAGTTGAGCT+CGG | - | chr1.3:47012845-47012864 | None:intergenic | 65.0% | |
| ! | CAAGCACAGTCGGTGCCTGG+TGG | - | chr1.3:47013980-47013999 | None:intergenic | 65.0% |
| ! | TGGCAAGCACAGTCGGTGCC+TGG | - | chr1.3:47013983-47014002 | None:intergenic | 65.0% |
| AGGACGCGCGCGTGGAAAGG+CGG | - | chr1.3:47012789-47012808 | None:intergenic | 70.0% | |
| CGCGTGGGAGTTGAGCTCGG+AGG | - | chr1.3:47012842-47012861 | None:intergenic | 70.0% | |
| GGACGCGCGCGTGGAAAGGC+GGG | - | chr1.3:47012788-47012807 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 47012769 | 47016617 | 47012769 | ID=MS.gene073799 |
| chr1.3 | mRNA | 47012769 | 47016617 | 47012769 | ID=MS.gene073799.t1;Parent=MS.gene073799 |
| chr1.3 | exon | 47012769 | 47013053 | 47012769 | ID=MS.gene073799.t1.exon1;Parent=MS.gene073799.t1 |
| chr1.3 | CDS | 47012769 | 47013053 | 47012769 | ID=cds.MS.gene073799.t1;Parent=MS.gene073799.t1 |
| chr1.3 | exon | 47015282 | 47015422 | 47015282 | ID=MS.gene073799.t1.exon2;Parent=MS.gene073799.t1 |
| chr1.3 | CDS | 47015282 | 47015422 | 47015282 | ID=cds.MS.gene073799.t1;Parent=MS.gene073799.t1 |
| chr1.3 | exon | 47015854 | 47016126 | 47015854 | ID=MS.gene073799.t1.exon3;Parent=MS.gene073799.t1 |
| chr1.3 | CDS | 47015854 | 47016126 | 47015854 | ID=cds.MS.gene073799.t1;Parent=MS.gene073799.t1 |
| chr1.3 | exon | 47016474 | 47016617 | 47016474 | ID=MS.gene073799.t1.exon4;Parent=MS.gene073799.t1 |
| chr1.3 | CDS | 47016474 | 47016617 | 47016474 | ID=cds.MS.gene073799.t1;Parent=MS.gene073799.t1 |
| Gene Sequence |
| Protein sequence |
