AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073982

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073982.t1 MTR_8g442400 55.799 319 125 5 1 304 15 332 1.21e-102 332
MS.gene073982.t1 MTR_0036s0010 97.368 76 2 0 1 76 1 76 2.39e-49 160
MS.gene073982.t1 MTR_1g090020 37.267 322 149 8 30 298 23 344 5.39e-48 174
MS.gene073982.t1 MTR_6g033130 42.248 258 112 6 78 298 84 341 6.24e-48 174
MS.gene073982.t1 MTR_6g033130 42.248 258 112 6 78 298 84 341 6.91e-48 174
MS.gene073982.t1 MTR_2g461180 45.355 183 91 3 151 324 215 397 2.43e-38 146
MS.gene073982.t1 MTR_4g116520 53.957 139 58 3 146 280 147 283 2.73e-38 146
MS.gene073982.t1 MTR_4g128650 50.350 143 69 2 139 281 16 156 2.29e-29 120
MS.gene073982.t1 MTR_4g091530 46.018 113 58 2 141 250 19 131 1.42e-27 112
MS.gene073982.t1 MTR_2g005700 39.007 141 74 3 151 280 13 152 2.49e-24 102
MS.gene073982.t1 MTR_6g082400 38.961 154 83 4 151 295 59 210 5.11e-24 103
MS.gene073982.t1 MTR_2g010160 43.519 108 59 2 145 250 38 145 2.04e-22 98.2
MS.gene073982.t1 MTR_4g105020 49.451 91 44 1 142 232 2 90 2.79e-22 92.8
MS.gene073982.t1 MTR_4g092850 41.284 109 60 2 145 250 33 140 1.81e-21 95.5
MS.gene073982.t1 MTR_5g032960 44.000 100 55 1 151 249 16 115 1.96e-21 92.0
MS.gene073982.t1 MTR_1g109470 40.351 114 63 2 142 250 46 159 5.34e-21 95.1
MS.gene073982.t1 MTR_8g106245 35.948 153 78 6 106 250 15 155 1.99e-18 87.0
MS.gene073982.t1 MTR_3g077030 43.902 82 46 0 151 232 9 90 1.01e-16 78.2
MS.gene073982.t1 MTR_5g067120 39.130 115 61 4 143 252 21 131 5.37e-16 79.0
MS.gene073982.t1 MTR_5g088620 34.259 108 64 4 151 252 4 110 2.82e-13 68.9
MS.gene073982.t1 MTR_5g488180 34.862 109 62 3 151 252 4 110 1.26e-11 63.9
MS.gene073982.t1 MTR_5g088090 34.862 109 62 3 151 252 4 110 1.26e-11 63.9
MS.gene073982.t1 MTR_5g088140 34.862 109 62 3 151 252 4 110 1.26e-11 63.9
MS.gene073982.t1 MTR_5g088120 33.945 109 63 3 151 252 4 110 2.59e-11 62.8
MS.gene073982.t1 MTR_5g488190 33.945 109 63 3 151 252 4 110 2.59e-11 62.8
MS.gene073982.t1 MTR_5g067160 32.800 125 76 3 151 267 43 167 5.50e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073982.t1 AT1G79570 51.829 328 140 8 1 312 14 339 5.44e-92 296
MS.gene073982.t1 AT1G79570 51.829 328 140 8 1 312 14 339 4.12e-91 296
MS.gene073982.t1 AT1G79570 51.829 328 140 8 1 312 14 339 4.12e-91 296
MS.gene073982.t1 AT1G79570 51.829 328 140 8 1 312 14 339 7.02e-91 296
MS.gene073982.t1 AT1G79570 51.829 328 140 8 1 312 14 339 7.02e-91 296
MS.gene073982.t1 AT1G16270 52.703 296 114 7 32 312 43 327 1.52e-76 256
MS.gene073982.t1 AT1G16270 52.703 296 114 7 32 312 43 327 1.52e-76 256
MS.gene073982.t1 AT1G16270 52.703 296 114 7 32 312 43 327 1.52e-76 256
MS.gene073982.t1 AT2G35050 47.508 301 127 10 2 281 16 306 1.24e-65 225
MS.gene073982.t1 AT2G35050 47.508 301 127 10 2 281 16 306 1.24e-65 225
MS.gene073982.t1 AT3G24715 33.871 310 156 7 44 310 29 332 1.22e-37 144
MS.gene073982.t1 AT3G24715 33.871 310 156 7 44 310 29 332 1.22e-37 144
MS.gene073982.t1 AT3G24715 33.871 310 156 7 44 310 29 332 1.22e-37 144
MS.gene073982.t1 AT3G46920 54.815 135 56 3 151 280 75 209 1.26e-37 144
MS.gene073982.t1 AT3G46920 54.815 135 56 3 151 280 9 143 1.75e-37 144
MS.gene073982.t1 AT1G04700 37.891 256 116 8 45 280 30 262 2.24e-35 137
MS.gene073982.t1 AT1G04700 37.891 256 116 8 45 280 30 262 2.77e-35 137
MS.gene073982.t1 AT1G04700 37.891 256 116 8 45 280 30 262 2.77e-35 137
MS.gene073982.t1 AT5G57610 51.515 132 61 2 151 280 24 154 3.06e-33 131
MS.gene073982.t1 AT5G49920 46.715 137 67 3 145 280 4 135 1.94e-31 120
MS.gene073982.t1 AT3G26510 50.000 112 48 3 143 249 4 112 3.35e-25 101
MS.gene073982.t1 AT3G26510 50.000 112 48 3 143 249 4 112 3.35e-25 101
MS.gene073982.t1 AT3G26510 50.000 112 48 3 143 249 4 112 3.35e-25 101
MS.gene073982.t1 AT3G26510 50.000 112 48 3 143 249 4 112 3.35e-25 101
MS.gene073982.t1 AT3G26510 50.000 112 48 3 143 249 4 112 3.35e-25 101
MS.gene073982.t1 AT3G26510 50.000 112 48 3 143 249 4 112 3.35e-25 101
MS.gene073982.t1 AT4G05150 39.041 146 80 4 110 251 22 162 6.71e-25 105
MS.gene073982.t1 AT1G70640 54.023 87 39 1 147 232 4 90 9.50e-24 97.1
MS.gene073982.t1 AT3G48240 50.505 99 45 1 151 249 14 108 3.91e-22 92.8
MS.gene073982.t1 AT2G01190 45.283 106 53 2 151 251 75 180 1.16e-21 97.1
MS.gene073982.t1 AT5G64430 39.130 138 73 3 148 278 42 175 1.32e-21 96.3
MS.gene073982.t1 AT3G18230 34.132 167 105 2 151 312 64 230 2.00e-20 93.2
MS.gene073982.t1 AT5G09620 40.541 111 60 2 151 255 40 150 9.86e-20 90.9
MS.gene073982.t1 AT5G09620 40.179 112 59 3 151 255 40 150 1.36e-19 90.5
MS.gene073982.t1 AT5G63130 51.948 77 37 0 146 222 10 86 6.36e-19 84.3
MS.gene073982.t1 AT5G63130 51.948 77 37 0 146 222 10 86 6.36e-19 84.3
MS.gene073982.t1 AT1G25300 33.043 115 71 2 151 263 11 121 4.76e-17 80.9
MS.gene073982.t1 AT5G16220 33.571 140 84 5 151 283 31 168 9.75e-17 81.6

Find 84 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGCTGGTATTCATTTCT+AGG 0.200025 2.1:-30239535 None:intergenic
CAGTATGTTATTGCTGTTAA+TGG 0.224995 2.1:+30240342 MS.gene073982:CDS
ATCACACCACCGGAACTAAA+TGG 0.240896 2.1:-30240588 None:intergenic
TAATTATACAACTGGTTATA+TGG 0.254070 2.1:+30239744 MS.gene073982:CDS
ATATAACCAGTTGTATAATT+AGG 0.258175 2.1:-30239742 None:intergenic
TTGCTTCTATCAAACTCTTT+AGG 0.259662 2.1:-30239850 None:intergenic
TCTTTCTGTCAGAAAATATT+AGG 0.269496 2.1:+30240561 MS.gene073982:CDS
TCCTGATGCAGCGAAGTTCT+TGG 0.283088 2.1:-30239895 None:intergenic
ATGAGAGACAAGGCAAATAT+TGG 0.293514 2.1:+30239691 MS.gene073982:CDS
AAGATATGTCCTTTCTTATA+CGG 0.296886 2.1:-30240068 None:intergenic
TGCAAATGATATAAATGAAT+TGG 0.298515 2.1:+30240416 MS.gene073982:CDS
GTTCTCAATCAGTGATTTGC+AGG 0.317590 2.1:+30240275 MS.gene073982:CDS
AGACAGTTTGTGCATGGATA+TGG 0.356567 2.1:+30239922 MS.gene073982:CDS
TTATACGGAGAATGCGTGTT+TGG 0.381207 2.1:-30240053 None:intergenic
ACAATTAAGTACCAGCTTCC+CGG 0.382280 2.1:+30240138 MS.gene073982:CDS
ATGAAGTTTCTTTGTAGCTT+CGG 0.397325 2.1:+30239979 MS.gene073982:CDS
TGCATTATTGACTGTGATCC+AGG 0.400408 2.1:-30239553 None:intergenic
TCCAAGAACTTCGCTGCATC+AGG 0.410677 2.1:+30239894 MS.gene073982:CDS
GGTGTATAAATCAGTACAAT+CGG 0.413109 2.1:+30240454 MS.gene073982:CDS
TGATGAGTTATCATAACTTT+CGG 0.413222 2.1:-30239950 None:intergenic
TGAGAGACAAGGCAAATATT+GGG 0.414691 2.1:+30239692 MS.gene073982:CDS
TTAGGCAACCCATTTAGTTC+CGG 0.419445 2.1:+30240579 MS.gene073982:CDS
GATTTGCAGGATGCTCAGTT+TGG 0.423232 2.1:+30240288 MS.gene073982:CDS
TGCTGTTAATGGCATGGACT+TGG 0.425364 2.1:+30240353 MS.gene073982:CDS
AGTCATGGAGGATCTGAAAC+TGG 0.436068 2.1:+30239790 MS.gene073982:CDS
AGCGTTGATGATCTATAATC+AGG 0.441209 2.1:+30240110 MS.gene073982:CDS
CAATTAAGTACCAGCTTCCC+GGG 0.442674 2.1:+30240139 MS.gene073982:CDS
AGTGATCCTAATTATACAAC+TGG 0.444251 2.1:+30239736 MS.gene073982:CDS
CGGGGAAGATCTTGATGCCT+TGG 0.444463 2.1:+30240158 MS.gene073982:CDS
GTACAATCGGGGAGTAGAAA+TGG 0.450505 2.1:+30240467 MS.gene073982:CDS
CATGTCTATGCCGTCAATGA+TGG 0.456219 2.1:+30239819 MS.gene073982:CDS
TCAGTTTGGTCTCACGTCCA+TGG 0.456435 2.1:+30240302 MS.gene073982:CDS
TACCTTAGCTTTCCATCACT+TGG 0.469395 2.1:-30240021 None:intergenic
TGTATCAAATAATGCTGTAC+AGG 0.469726 2.1:-30239640 None:intergenic
TCACACCACCGGAACTAAAT+GGG 0.472555 2.1:-30240587 None:intergenic
CAAGATCTTCCCCGGGAAGC+TGG 0.477699 2.1:-30240149 None:intergenic
GATGGAAAGCTAAGGTATGT+TGG 0.479309 2.1:+30240027 MS.gene073982:CDS
GAGAAGGATCACAAAAGCTT+AGG 0.485352 2.1:+30240244 MS.gene073982:CDS
GTTTAACTTCCGATGTATTG+AGG 0.496791 2.1:-30239618 None:intergenic
TAGAAATGGCTGTGGAATTG+AGG 0.505903 2.1:+30240481 MS.gene073982:CDS
GTGTATAAATCAGTACAATC+GGG 0.510389 2.1:+30240455 MS.gene073982:CDS
CATTAACAGCAATAACATAC+TGG 0.512418 2.1:-30240341 None:intergenic
CAGCATTATTTGATACAGAC+AGG 0.516228 2.1:+30239646 MS.gene073982:CDS
CAGTTTGGTCTCACGTCCAT+GGG 0.516382 2.1:+30240303 MS.gene073982:CDS
GAGTCTCAAGTCATTGAAGC+TGG 0.518318 2.1:+30240503 MS.gene073982:CDS
CAAGGCATCAAGATCTTCCC+CGG 0.523488 2.1:-30240157 None:intergenic
ATTTAGTTCCGGTGGTGTGA+TGG 0.528827 2.1:+30240590 MS.gene073982:CDS
GGATATTTATCCATCATTGA+CGG 0.534174 2.1:-30239829 None:intergenic
CCTAGAAATGAATACCAGCC+TGG 0.535022 2.1:+30239535 MS.gene073982:CDS
AAATGATATAAATGAATTGG+AGG 0.535088 2.1:+30240419 MS.gene073982:CDS
AATGATATAAATGAATTGGA+GGG 0.553986 2.1:+30240420 MS.gene073982:CDS
CTCAACTGCCATCACACCAC+CGG 0.556720 2.1:-30240598 None:intergenic
ATATTGCCACGGCCAAGTGA+TGG 0.557947 2.1:+30240009 MS.gene073982:CDS
GACAATAGACAGTTTGTGCA+TGG 0.562402 2.1:+30239916 MS.gene073982:CDS
ACGCATTCTCCGTATAAGAA+AGG 0.563451 2.1:+30240059 MS.gene073982:CDS
CGAGGATATACAGAACATGA+TGG 0.569777 2.1:+30240197 MS.gene073982:CDS
GTCAATAATGCATGACCACA+TGG 0.572642 2.1:+30239564 MS.gene073982:CDS
TCACTGACATTCGAAAATAC+AGG 0.575002 2.1:-30239718 None:intergenic
AGCTTTCCATCACTTGGCCG+TGG 0.576472 2.1:-30240015 None:intergenic
GGCAACCCATTTAGTTCCGG+TGG 0.576497 2.1:+30240582 MS.gene073982:CDS
GACTTCAGAATCATCGCCCA+TGG 0.577887 2.1:-30240319 None:intergenic
TGTTATTGCTGTTAATGGCA+TGG 0.586180 2.1:+30240347 MS.gene073982:CDS
TGATATAAATGAATTGGAGG+GGG 0.590845 2.1:+30240422 MS.gene073982:CDS
GAGTTTGATAGAAGCAACTA+CGG 0.597113 2.1:+30239856 MS.gene073982:CDS
TCGGGGAGTAGAAATGGCTG+TGG 0.605719 2.1:+30240473 MS.gene073982:CDS
ATAATGCATGACCACATGGA+TGG 0.606199 2.1:+30239568 MS.gene073982:CDS
ATGATATAAATGAATTGGAG+GGG 0.607759 2.1:+30240421 MS.gene073982:CDS
TTATTGACTGTGATCCAGGC+TGG 0.620943 2.1:-30239549 None:intergenic
TCCGATGTATTGAGGTCATG+TGG 0.628153 2.1:-30239610 None:intergenic
GGAAAGCTAAGGTATGTTGG+AGG 0.631215 2.1:+30240030 MS.gene073982:CDS
ACTGGTTATATGGAACTGAA+AGG 0.631603 2.1:+30239754 MS.gene073982:CDS
GGCCAAGTGATGGAAAGCTA+AGG 0.638781 2.1:+30240019 MS.gene073982:CDS
AAGTTTCTTTGTAGCTTCGG+CGG 0.643153 2.1:+30239982 MS.gene073982:CDS
TCTTGAGTTTATGAGAGACA+AGG 0.645998 2.1:+30239681 MS.gene073982:CDS
AAGGCATCAAGATCTTCCCC+GGG 0.650794 2.1:-30240156 None:intergenic
GTCAGATGATACAGATACCA+AGG 0.657270 2.1:-30240175 None:intergenic
TTATTTGATACAGACAGGTG+AGG 0.661215 2.1:+30239651 MS.gene073982:CDS
ACCACATGACCTCAATACAT+CGG 0.661871 2.1:+30239609 MS.gene073982:CDS
AATCATCTAGAAGATAGAGA+AGG 0.670856 2.1:+30240228 MS.gene073982:CDS
TCATATAAATTCCATCCATG+TGG 0.684508 2.1:-30239579 None:intergenic
TGTATAAATCAGTACAATCG+GGG 0.687901 2.1:+30240456 MS.gene073982:CDS
TCGGCGGTAGAATATTGCCA+CGG 0.717552 2.1:+30239998 MS.gene073982:CDS
GGTATCTGTATCATCTGACG+AGG 0.721389 2.1:+30240179 MS.gene073982:CDS
AATTAAGTACCAGCTTCCCG+GGG 0.728477 2.1:+30240140 MS.gene073982:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATATAAATGAATTGG+AGG + chr2.1:30240419-30240438 MS.gene073982:CDS 20.0%
!! AATGATATAAATGAATTGGA+GGG + chr2.1:30240420-30240439 MS.gene073982:CDS 20.0%
!! ATATAACCAGTTGTATAATT+AGG - chr2.1:30239745-30239764 None:intergenic 20.0%
!! TAATTATACAACTGGTTATA+TGG + chr2.1:30239744-30239763 MS.gene073982:CDS 20.0%
!! TGCAAATGATATAAATGAAT+TGG + chr2.1:30240416-30240435 MS.gene073982:CDS 20.0%
! AAGATATGTCCTTTCTTATA+CGG - chr2.1:30240071-30240090 None:intergenic 25.0%
! AGAAAAAACTCAAATATGGT+TGG + chr2.1:30240381-30240400 MS.gene073982:CDS 25.0%
! ATGATATAAATGAATTGGAG+GGG + chr2.1:30240421-30240440 MS.gene073982:CDS 25.0%
! TCTTTCTGTCAGAAAATATT+AGG + chr2.1:30240561-30240580 MS.gene073982:CDS 25.0%
! TGATGAGTTATCATAACTTT+CGG - chr2.1:30239953-30239972 None:intergenic 25.0%
AATCATCTAGAAGATAGAGA+AGG + chr2.1:30240228-30240247 MS.gene073982:CDS 30.0%
AGTGATCCTAATTATACAAC+TGG + chr2.1:30239736-30239755 MS.gene073982:CDS 30.0%
ATGAAGTTTCTTTGTAGCTT+CGG + chr2.1:30239979-30239998 MS.gene073982:CDS 30.0%
CATTAACAGCAATAACATAC+TGG - chr2.1:30240344-30240363 None:intergenic 30.0%
GGATATTTATCCATCATTGA+CGG - chr2.1:30239832-30239851 None:intergenic 30.0%
GGTGTATAAATCAGTACAAT+CGG + chr2.1:30240454-30240473 MS.gene073982:CDS 30.0%
GTCGAGAAAAAACTCAAATA+TGG + chr2.1:30240377-30240396 MS.gene073982:CDS 30.0%
GTGTATAAATCAGTACAATC+GGG + chr2.1:30240455-30240474 MS.gene073982:CDS 30.0%
TCATATAAATTCCATCCATG+TGG - chr2.1:30239582-30239601 None:intergenic 30.0%
TGATATAAATGAATTGGAGG+GGG + chr2.1:30240422-30240441 MS.gene073982:CDS 30.0%
TGTATAAATCAGTACAATCG+GGG + chr2.1:30240456-30240475 MS.gene073982:CDS 30.0%
TGTATCAAATAATGCTGTAC+AGG - chr2.1:30239643-30239662 None:intergenic 30.0%
TTGCTTCTATCAAACTCTTT+AGG - chr2.1:30239853-30239872 None:intergenic 30.0%
! CAGTATGTTATTGCTGTTAA+TGG + chr2.1:30240342-30240361 MS.gene073982:CDS 30.0%
ACTGGTTATATGGAACTGAA+AGG + chr2.1:30239754-30239773 MS.gene073982:CDS 35.0%
ATGAGAGACAAGGCAAATAT+TGG + chr2.1:30239691-30239710 MS.gene073982:CDS 35.0%
CAGCATTATTTGATACAGAC+AGG + chr2.1:30239646-30239665 MS.gene073982:CDS 35.0%
GAGTTTGATAGAAGCAACTA+CGG + chr2.1:30239856-30239875 MS.gene073982:CDS 35.0%
TCACTGACATTCGAAAATAC+AGG - chr2.1:30239721-30239740 None:intergenic 35.0%
TCTTGAGTTTATGAGAGACA+AGG + chr2.1:30239681-30239700 MS.gene073982:CDS 35.0%
TGAGAGACAAGGCAAATATT+GGG + chr2.1:30239692-30239711 MS.gene073982:CDS 35.0%
TTATTTGATACAGACAGGTG+AGG + chr2.1:30239651-30239670 MS.gene073982:CDS 35.0%
! GTTTAACTTCCGATGTATTG+AGG - chr2.1:30239621-30239640 None:intergenic 35.0%
! TGTTATTGCTGTTAATGGCA+TGG + chr2.1:30240347-30240366 MS.gene073982:CDS 35.0%
!! AGCGTTGATGATCTATAATC+AGG + chr2.1:30240110-30240129 MS.gene073982:CDS 35.0%
!! ATTTTAGGAATCAGTCATGG+AGG + chr2.1:30239778-30239797 MS.gene073982:CDS 35.0%
!!! ATGGAACTGAAAGGCATTTT+AGG + chr2.1:30239763-30239782 MS.gene073982:CDS 35.0%
AAGTTTCTTTGTAGCTTCGG+CGG + chr2.1:30239982-30240001 MS.gene073982:CDS 40.0%
ACAATTAAGTACCAGCTTCC+CGG + chr2.1:30240138-30240157 MS.gene073982:CDS 40.0%
ACCACATGACCTCAATACAT+CGG + chr2.1:30239609-30239628 MS.gene073982:CDS 40.0%
ACGCATTCTCCGTATAAGAA+AGG + chr2.1:30240059-30240078 MS.gene073982:CDS 40.0%
AGACAGTTTGTGCATGGATA+TGG + chr2.1:30239922-30239941 MS.gene073982:CDS 40.0%
ATAATGCATGACCACATGGA+TGG + chr2.1:30239568-30239587 MS.gene073982:CDS 40.0%
CGAGGATATACAGAACATGA+TGG + chr2.1:30240197-30240216 MS.gene073982:CDS 40.0%
GACAATAGACAGTTTGTGCA+TGG + chr2.1:30239916-30239935 MS.gene073982:CDS 40.0%
GAGAAGGATCACAAAAGCTT+AGG + chr2.1:30240244-30240263 MS.gene073982:CDS 40.0%
GATGGAAAGCTAAGGTATGT+TGG + chr2.1:30240027-30240046 MS.gene073982:CDS 40.0%
GTCAATAATGCATGACCACA+TGG + chr2.1:30239564-30239583 MS.gene073982:CDS 40.0%
GTCAGATGATACAGATACCA+AGG - chr2.1:30240178-30240197 None:intergenic 40.0%
TAGAAATGGCTGTGGAATTG+AGG + chr2.1:30240481-30240500 MS.gene073982:CDS 40.0%
TTATACGGAGAATGCGTGTT+TGG - chr2.1:30240056-30240075 None:intergenic 40.0%
! GTTCTCAATCAGTGATTTGC+AGG + chr2.1:30240275-30240294 MS.gene073982:CDS 40.0%
! TACCTTAGCTTTCCATCACT+TGG - chr2.1:30240024-30240043 None:intergenic 40.0%
! TGCATTATTGACTGTGATCC+AGG - chr2.1:30239556-30239575 None:intergenic 40.0%
! TTAGGCAACCCATTTAGTTC+CGG + chr2.1:30240579-30240598 MS.gene073982:CDS 40.0%
!! GGCATTTTAGGAATCAGTCA+TGG + chr2.1:30239775-30239794 MS.gene073982:CDS 40.0%
AATTAAGTACCAGCTTCCCG+GGG + chr2.1:30240140-30240159 MS.gene073982:CDS 45.0%
AATTGGAGGGGGATCATTCT+TGG + chr2.1:30240433-30240452 MS.gene073982:CDS 45.0%
ATCACACCACCGGAACTAAA+TGG - chr2.1:30240591-30240610 None:intergenic 45.0%
CAATTAAGTACCAGCTTCCC+GGG + chr2.1:30240139-30240158 MS.gene073982:CDS 45.0%
CATGTCTATGCCGTCAATGA+TGG + chr2.1:30239819-30239838 MS.gene073982:CDS 45.0%
CCAGGCTGGTATTCATTTCT+AGG - chr2.1:30239538-30239557 None:intergenic 45.0%
CCTAGAAATGAATACCAGCC+TGG + chr2.1:30239535-30239554 MS.gene073982:CDS 45.0%
GAGTCTCAAGTCATTGAAGC+TGG + chr2.1:30240503-30240522 MS.gene073982:CDS 45.0%
GATTTGCAGGATGCTCAGTT+TGG + chr2.1:30240288-30240307 MS.gene073982:CDS 45.0%
GGAAAGCTAAGGTATGTTGG+AGG + chr2.1:30240030-30240049 MS.gene073982:CDS 45.0%
GGTATCTGTATCATCTGACG+AGG + chr2.1:30240179-30240198 MS.gene073982:CDS 45.0%
GTACAATCGGGGAGTAGAAA+TGG + chr2.1:30240467-30240486 MS.gene073982:CDS 45.0%
TCACACCACCGGAACTAAAT+GGG - chr2.1:30240590-30240609 None:intergenic 45.0%
TCCGATGTATTGAGGTCATG+TGG - chr2.1:30239613-30239632 None:intergenic 45.0%
TGCTGTTAATGGCATGGACT+TGG + chr2.1:30240353-30240372 MS.gene073982:CDS 45.0%
! AGTCATGGAGGATCTGAAAC+TGG + chr2.1:30239790-30239809 MS.gene073982:CDS 45.0%
! ATTTAGTTCCGGTGGTGTGA+TGG + chr2.1:30240590-30240609 MS.gene073982:CDS 45.0%
! TTATTGACTGTGATCCAGGC+TGG - chr2.1:30239552-30239571 None:intergenic 45.0%
ATATTGCCACGGCCAAGTGA+TGG + chr2.1:30240009-30240028 MS.gene073982:CDS 50.0%
CAGTTTGGTCTCACGTCCAT+GGG + chr2.1:30240303-30240322 MS.gene073982:CDS 50.0%
GACTTCAGAATCATCGCCCA+TGG - chr2.1:30240322-30240341 None:intergenic 50.0%
TCAGTTTGGTCTCACGTCCA+TGG + chr2.1:30240302-30240321 MS.gene073982:CDS 50.0%
TCCAAGAACTTCGCTGCATC+AGG + chr2.1:30239894-30239913 MS.gene073982:CDS 50.0%
TCCTGATGCAGCGAAGTTCT+TGG - chr2.1:30239898-30239917 None:intergenic 50.0%
TCGGCGGTAGAATATTGCCA+CGG + chr2.1:30239998-30240017 MS.gene073982:CDS 50.0%
! AAGGCATCAAGATCTTCCCC+GGG - chr2.1:30240159-30240178 None:intergenic 50.0%
! CAAGGCATCAAGATCTTCCC+CGG - chr2.1:30240160-30240179 None:intergenic 50.0%
! GGCCAAGTGATGGAAAGCTA+AGG + chr2.1:30240019-30240038 MS.gene073982:CDS 50.0%
AGCTTTCCATCACTTGGCCG+TGG - chr2.1:30240018-30240037 None:intergenic 55.0%
CGGGGAAGATCTTGATGCCT+TGG + chr2.1:30240158-30240177 MS.gene073982:CDS 55.0%
CTCAACTGCCATCACACCAC+CGG - chr2.1:30240601-30240620 None:intergenic 55.0%
TCGGGGAGTAGAAATGGCTG+TGG + chr2.1:30240473-30240492 MS.gene073982:CDS 55.0%
! GGCAACCCATTTAGTTCCGG+TGG + chr2.1:30240582-30240601 MS.gene073982:CDS 55.0%
CAAGATCTTCCCCGGGAAGC+TGG - chr2.1:30240152-30240171 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 30239529 30240623 30239529 ID=MS.gene073982
chr2.1 mRNA 30239529 30240623 30239529 ID=MS.gene073982.t1;Parent=MS.gene073982
chr2.1 exon 30239529 30240623 30239529 ID=MS.gene073982.t1.exon1;Parent=MS.gene073982.t1
chr2.1 CDS 30239529 30240623 30239529 ID=cds.MS.gene073982.t1;Parent=MS.gene073982.t1
Gene Sequence

>MS.gene073982

ATGGATCCTAGAAATGAATACCAGCCTGGATCACAGTCAATAATGCATGACCACATGGATGGAATTTATATGAGTAGAAGACCACATGACCTCAATACATCGGAAGTTAAACCTGTACAGCATTATTTGATACAGACAGGTGAGGAATTCTCTCTTGAGTTTATGAGAGACAAGGCAAATATTGGGAAGCCTGTATTTTCGAATGTCAGTGATCCTAATTATACAACTGGTTATATGGAACTGAAAGGCATTTTAGGAATCAGTCATGGAGGATCTGAAACTGGATCAGACATGTCTATGCCGTCAATGATGGATAAATATCCTAAAGAGTTTGATAGAAGCAACTACGGATCGATTCGATCGATTCCAAGAACTTCGCTGCATCAGGACAATAGACAGTTTGTGCATGGATATGGCTCTTCCGAAAGTTATGATAACTCATCAATTATGATGAAGTTTCTTTGTAGCTTCGGCGGTAGAATATTGCCACGGCCAAGTGATGGAAAGCTAAGGTATGTTGGAGGCCAAACACGCATTCTCCGTATAAGAAAGGACATATCTTATCACGAGCTTATTCAAAAAGCGTTGATGATCTATAATCAGGTTCAGACAATTAAGTACCAGCTTCCCGGGGAAGATCTTGATGCCTTGGTATCTGTATCATCTGACGAGGATATACAGAACATGATGGAAGAATGTAATCATCTAGAAGATAGAGAAGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATCAGTGATTTGCAGGATGCTCAGTTTGGTCTCACGTCCATGGGCGATGATTCTGAAGTCCAGTATGTTATTGCTGTTAATGGCATGGACTTGGAGTCGAGAAAAAACTCAAATATGGTTGGTTTGAGCTTTTCTGCAAATGATATAAATGAATTGGAGGGGGATCATTCTTGGTGTATAAATCAGTACAATCGGGGAGTAGAAATGGCTGTGGAATTGAGGAGTCTCAAGTCATTGAAGCTGGAAATCAAGAGTAGAAATGTAGATAGCATGTTCTTCTCTTTCTGTCAGAAAATATTAGGCAACCCATTTAGTTCCGGTGGTGTGATGGCAGTTGAGTAA
Protein sequence

>MS.gene073982.t1

MDPRNEYQPGSQSIMHDHMDGIYMSRRPHDLNTSEVKPVQHYLIQTGEEFSLEFMRDKANIGKPVFSNVSDPNYTTGYMELKGILGISHGGSETGSDMSMPSMMDKYPKEFDRSNYGSIRSIPRTSLHQDNRQFVHGYGSSESYDNSSIMMKFLCSFGGRILPRPSDGKLRYVGGQTRILRIRKDISYHELIQKALMIYNQVQTIKYQLPGEDLDALVSVSSDEDIQNMMEECNHLEDREGSQKLRMFLFSISDLQDAQFGLTSMGDDSEVQYVIAVNGMDLESRKNSNMVGLSFSANDINELEGDHSWCINQYNRGVEMAVELRSLKSLKLEIKSRNVDSMFFSFCQKILGNPFSSGGVMAVE