Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074025.t1 | KEH27811.1 | 81.4 | 354 | 37 | 1 | 86 | 439 | 1 | 325 | 6.40E-163 | 583.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074025.t1 | A0A072UEG3 | 81.4 | 354 | 37 | 1 | 86 | 439 | 1 | 325 | 4.6e-163 | 583.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058168 | MS.gene074025 | 0.804305 | 2.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074025.t1 | MTR_5g039515 | 83.898 | 354 | 28 | 1 | 86 | 439 | 1 | 325 | 0.0 | 577 |
| MS.gene074025.t1 | MTR_5g039510 | 61.538 | 416 | 100 | 8 | 70 | 458 | 40 | 422 | 5.49e-165 | 473 |
| MS.gene074025.t1 | MTR_8g469580 | 33.755 | 237 | 147 | 6 | 29 | 259 | 43 | 275 | 2.58e-30 | 123 |
| MS.gene074025.t1 | MTR_5g095330 | 32.283 | 254 | 149 | 8 | 16 | 252 | 9 | 256 | 6.69e-27 | 109 |
| MS.gene074025.t1 | MTR_5g095430 | 32.000 | 250 | 157 | 7 | 16 | 256 | 264 | 509 | 5.57e-26 | 111 |
| MS.gene074025.t1 | MTR_5g095400 | 31.349 | 252 | 160 | 7 | 14 | 256 | 271 | 518 | 8.23e-25 | 107 |
| MS.gene074025.t1 | MTR_1g044605 | 29.964 | 277 | 177 | 8 | 29 | 295 | 26 | 295 | 1.17e-23 | 103 |
| MS.gene074025.t1 | MTR_0126s0010 | 40.881 | 159 | 80 | 6 | 113 | 267 | 12 | 160 | 1.32e-21 | 95.5 |
| MS.gene074025.t1 | MTR_8g056180 | 32.000 | 225 | 138 | 6 | 79 | 295 | 3 | 220 | 1.51e-21 | 95.9 |
| MS.gene074025.t1 | MTR_6g088860 | 31.527 | 203 | 125 | 5 | 79 | 274 | 3 | 198 | 2.29e-20 | 90.5 |
| MS.gene074025.t1 | MTR_6g466450 | 31.527 | 203 | 125 | 5 | 79 | 274 | 3 | 198 | 2.29e-20 | 90.5 |
| MS.gene074025.t1 | MTR_6g023550 | 28.169 | 213 | 137 | 4 | 24 | 236 | 122 | 318 | 5.25e-18 | 85.1 |
| MS.gene074025.t1 | MTR_7g070630 | 32.418 | 182 | 105 | 7 | 82 | 258 | 84 | 252 | 1.04e-15 | 79.3 |
| MS.gene074025.t1 | MTR_5g079810 | 32.386 | 176 | 105 | 6 | 86 | 258 | 10 | 174 | 7.58e-15 | 75.9 |
| MS.gene074025.t1 | MTR_5g095270 | 30.263 | 152 | 99 | 4 | 100 | 248 | 30 | 177 | 1.14e-13 | 69.7 |
| MS.gene074025.t1 | MTR_3g080720 | 28.448 | 232 | 131 | 11 | 27 | 252 | 43 | 245 | 6.11e-12 | 67.8 |
| MS.gene074025.t1 | MTR_3g455890 | 27.542 | 236 | 132 | 10 | 28 | 258 | 44 | 245 | 3.70e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTATAAATGAAGATTTA+TGG | 0.146938 | 5.1:-29784270 | MS.gene074025:CDS |
| TGACTGTTATGCATCCAATT+TGG | 0.202413 | 5.1:+29783869 | None:intergenic |
| TTCTGGTTGCACGTCTGGTT+GGG | 0.227468 | 5.1:+29784102 | None:intergenic |
| AGGCGCCAGCCTCATTTATT+CGG | 0.299680 | 5.1:+29783568 | None:intergenic |
| AGTGATTCAGGAACTGGTTT+AGG | 0.310568 | 5.1:-29783656 | MS.gene074025:CDS |
| ATAAATGAAGATTTATGGTT+AGG | 0.315198 | 5.1:-29784265 | MS.gene074025:CDS |
| CATCAGGACAACTCCCAAAT+TGG | 0.316571 | 5.1:-29783883 | MS.gene074025:CDS |
| GACTGTTATGCATCCAATTT+GGG | 0.331941 | 5.1:+29783870 | None:intergenic |
| CTTACCCAAGACTCATATTC+AGG | 0.336513 | 5.1:+29784664 | None:intergenic |
| ATAAGTTGTCCTAAATTAAT+CGG | 0.346241 | 5.1:+29784310 | None:intergenic |
| GGCGATTCTGGTTGCACGTC+TGG | 0.357384 | 5.1:+29784097 | None:intergenic |
| GGAGATCAAACTAGTGATTC+AGG | 0.357493 | 5.1:-29783668 | MS.gene074025:CDS |
| CAAGATTTGTCGATGACTTC+AGG | 0.365841 | 5.1:+29784166 | None:intergenic |
| ATCTCTTGCTATATATTCAT+TGG | 0.370321 | 5.1:+29784723 | None:intergenic |
| GGTGGTTGCGTGTCTTGTTC+TGG | 0.379885 | 5.1:+29783701 | None:intergenic |
| TGGTTGGGGCCTTGAACTAC+TGG | 0.387797 | 5.1:+29784117 | None:intergenic |
| GATAAGTTCTTTGTGTAAAC+CGG | 0.388883 | 5.1:-29784518 | MS.gene074025:CDS |
| TAAATGAAGATTTATGGTTA+GGG | 0.394744 | 5.1:-29784264 | MS.gene074025:CDS |
| GATGCTATTAATTCTGCGTT+AGG | 0.407215 | 5.1:-29784616 | MS.gene074025:CDS |
| GGCGCCAGCCTCATTTATTC+GGG | 0.407582 | 5.1:+29783569 | None:intergenic |
| GGAGCCTGCTGGGTCGGTTG+AGG | 0.408828 | 5.1:+29784007 | None:intergenic |
| CAAACTAGTGATTCAGGAAC+TGG | 0.412333 | 5.1:-29783662 | MS.gene074025:CDS |
| AAGAATTACAAAAGAGAGGC+TGG | 0.412505 | 5.1:-29784774 | MS.gene074025:CDS |
| ACGTCTGATAGAGGCGATTC+TGG | 0.417981 | 5.1:+29784085 | None:intergenic |
| TGTGATTGAAATTCGACTCT+TGG | 0.422182 | 5.1:+29783627 | None:intergenic |
| GACCGCGCCACCGGAGTGTT+GGG | 0.424613 | 5.1:-29784590 | MS.gene074025:CDS |
| CTGAAGTCATCGACAAATCT+TGG | 0.431555 | 5.1:-29784165 | MS.gene074025:CDS |
| GAATATGAGTCTTGGGTAAG+AGG | 0.432136 | 5.1:-29784661 | MS.gene074025:CDS |
| GGGGTATGCGACGAGGAATA+TGG | 0.438209 | 5.1:-29784205 | MS.gene074025:CDS |
| ATTCTGGTTGCACGTCTGGT+TGG | 0.440130 | 5.1:+29784101 | None:intergenic |
| ACTTACTTTGTGAGACAAAA+GGG | 0.440301 | 5.1:-29784225 | MS.gene074025:CDS |
| CAGGCTCGACATGGGTCATC+AGG | 0.440604 | 5.1:-29783899 | MS.gene074025:CDS |
| TGACCGCGCCACCGGAGTGT+TGG | 0.443659 | 5.1:-29784591 | MS.gene074025:CDS |
| GTCAACGGAGGCATCTGCTT+TGG | 0.444229 | 5.1:+29783752 | None:intergenic |
| AACTTACTTTGTGAGACAAA+AGG | 0.455591 | 5.1:-29784226 | MS.gene074025:CDS |
| TCTGGTTGCACGTCTGGTTG+GGG | 0.457457 | 5.1:+29784103 | None:intergenic |
| TTCATTGGTATACTTGATGC+TGG | 0.458760 | 5.1:+29784738 | None:intergenic |
| TTTACTCTTTGAAGAAGCAT+TGG | 0.462628 | 5.1:+29784693 | None:intergenic |
| GCACGAGAGAACATGAGTTT+CGG | 0.463977 | 5.1:-29783943 | MS.gene074025:CDS |
| TGTTCTGGTGGTTGTGGACA+AGG | 0.467735 | 5.1:+29783716 | None:intergenic |
| CATCCACCATCGTGAAAAGT+TGG | 0.480941 | 5.1:+29783969 | None:intergenic |
| AACGGAGGCATCTGCTTTGG+TGG | 0.494133 | 5.1:+29783755 | None:intergenic |
| TCTGTTTGCACGTCTGATAG+AGG | 0.494181 | 5.1:+29784076 | None:intergenic |
| GATCACTGGAACACTATAGT+AGG | 0.494466 | 5.1:-29784876 | MS.gene074025:CDS |
| GTGATTGAAATTCGACTCTT+GGG | 0.495780 | 5.1:+29783628 | None:intergenic |
| TCAGATACCCACATTGCTCC+CGG | 0.505817 | 5.1:+29784499 | None:intergenic |
| TTCAATCACAACAGTTTCGC+AGG | 0.506085 | 5.1:-29783614 | MS.gene074025:CDS |
| ACCCACAATGTCTGAGGATG+AGG | 0.510519 | 5.1:-29784974 | None:intergenic |
| GCATAACAGTCATGAATGGA+TGG | 0.514057 | 5.1:-29783858 | MS.gene074025:CDS |
| GGATAGAGGCCAGTAGTTCA+AGG | 0.514255 | 5.1:-29784126 | MS.gene074025:CDS |
| TGATCTCCCTCTTGATGTGG+TGG | 0.515713 | 5.1:+29783683 | None:intergenic |
| CAATTACAAATTCAGATCAC+TGG | 0.520370 | 5.1:-29784890 | MS.gene074025:CDS |
| GTGTCTTGTTCTGGTGGTTG+TGG | 0.525179 | 5.1:+29783710 | None:intergenic |
| TGATAGTGAGTGGAGGATAG+AGG | 0.531471 | 5.1:-29784140 | MS.gene074025:CDS |
| GTTAGGTTTGACCGCGCCAC+CGG | 0.532124 | 5.1:-29784599 | MS.gene074025:CDS |
| AATATGAGTCTTGGGTAAGA+GGG | 0.533829 | 5.1:-29784660 | MS.gene074025:CDS |
| AGCAATGTGGGTATCTGAAA+AGG | 0.538711 | 5.1:-29784494 | MS.gene074025:CDS |
| GTTGCAGTTATGTGATATGC+AGG | 0.543956 | 5.1:-29783918 | MS.gene074025:CDS |
| GGATCTTAAGTTAAGAGCTA+AGG | 0.547848 | 5.1:-29784440 | MS.gene074025:CDS |
| GGTGGTTGTGGACAAGGAGG+AGG | 0.549038 | 5.1:+29783722 | None:intergenic |
| CACGCAACCACCACATCAAG+AGG | 0.551617 | 5.1:-29783690 | MS.gene074025:CDS |
| CCACTGAAAGTACCTCTTGG+TGG | 0.552752 | 5.1:-29784949 | MS.gene074025:CDS |
| CATAACAGTCATGAATGGAT+GGG | 0.569571 | 5.1:-29783857 | MS.gene074025:CDS |
| GCTCCACTGAAAGTACCTCT+TGG | 0.578718 | 5.1:-29784952 | MS.gene074025:CDS |
| CCACCAAGAGGTACTTTCAG+TGG | 0.578914 | 5.1:+29784949 | None:intergenic |
| GTGTAAACCGGGAGCAATGT+GGG | 0.579095 | 5.1:-29784506 | MS.gene074025:CDS |
| TGTGATATGCAGGCTCGACA+TGG | 0.579193 | 5.1:-29783908 | MS.gene074025:CDS |
| ATAAGTTCTTTGTGTAAACC+GGG | 0.580951 | 5.1:-29784517 | MS.gene074025:CDS |
| TCAACCTCAACCGACCCAGC+AGG | 0.586269 | 5.1:-29784011 | MS.gene074025:CDS |
| GGATGCATAACAGTCATGAA+TGG | 0.588480 | 5.1:-29783862 | MS.gene074025:CDS |
| GTTTGATCTCCCTCTTGATG+TGG | 0.589284 | 5.1:+29783680 | None:intergenic |
| AGAATTACAAAAGAGAGGCT+GGG | 0.589320 | 5.1:-29784773 | MS.gene074025:CDS |
| GACCCAACACTCCGGTGGCG+CGG | 0.591887 | 5.1:+29784588 | None:intergenic |
| CAAGAAGAATTACAAAAGAG+AGG | 0.595295 | 5.1:-29784778 | MS.gene074025:CDS |
| TTCTTTCTTCCTCCACCAAG+AGG | 0.603504 | 5.1:+29784937 | None:intergenic |
| TTCTCGACCCAACACTCCGG+TGG | 0.604184 | 5.1:+29784583 | None:intergenic |
| GTGATATGCAGGCTCGACAT+GGG | 0.609649 | 5.1:-29783907 | MS.gene074025:CDS |
| AATCTTGGTATGATAGTGAG+TGG | 0.616351 | 5.1:-29784150 | MS.gene074025:CDS |
| CTGAAAGTACCTCTTGGTGG+AGG | 0.617651 | 5.1:-29784946 | MS.gene074025:CDS |
| AACAGACTTCTATACTAGCA+TGG | 0.617735 | 5.1:+29784401 | None:intergenic |
| TTATCCACCCACAATGTCTG+AGG | 0.619976 | 5.1:-29784980 | None:intergenic |
| TGTGTAAACCGGGAGCAATG+TGG | 0.626960 | 5.1:-29784507 | MS.gene074025:CDS |
| GGTTGCGTGTCTTGTTCTGG+TGG | 0.627138 | 5.1:+29783704 | None:intergenic |
| ATAACAGTCATGAATGGATG+GGG | 0.627336 | 5.1:-29783856 | MS.gene074025:CDS |
| TCTGGTGGTTGTGGACAAGG+AGG | 0.634052 | 5.1:+29783719 | None:intergenic |
| CTTACTTTGTGAGACAAAAG+GGG | 0.642700 | 5.1:-29784224 | MS.gene074025:CDS |
| GGAGGAGGAAAATAAGTCAA+CGG | 0.659409 | 5.1:+29783737 | None:intergenic |
| ACGCAACCACCACATCAAGA+GGG | 0.664266 | 5.1:-29783689 | MS.gene074025:CDS |
| CTTGGTATGATAGTGAGTGG+AGG | 0.665917 | 5.1:-29784147 | MS.gene074025:CDS |
| GACAAAAGGGGTATGCGACG+AGG | 0.672372 | 5.1:-29784212 | MS.gene074025:CDS |
| ATATGAGTCTTGGGTAAGAG+GGG | 0.675833 | 5.1:-29784659 | MS.gene074025:CDS |
| TTAAGTTAAGAGCTAAGGCG+TGG | 0.677109 | 5.1:-29784435 | MS.gene074025:CDS |
| TCATATGTCTCTGCACTCAG+CGG | 0.680778 | 5.1:+29784547 | None:intergenic |
| GGAGGAAAATAAGTCAACGG+AGG | 0.736394 | 5.1:+29783740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAAATGAAGATTTA+TGG | - | chr5.1:29784280-29784299 | MS.gene074025:CDS | 10.0% |
| !! | AATGAAAAACCGATTAATTT+AGG | - | chr5.1:29784231-29784250 | MS.gene074025:CDS | 20.0% |
| !! | ATAAATGAAGATTTATGGTT+AGG | - | chr5.1:29784285-29784304 | MS.gene074025:CDS | 20.0% |
| !! | ATAAGTTGTCCTAAATTAAT+CGG | + | chr5.1:29784243-29784262 | None:intergenic | 20.0% |
| !! | TAAATGAAGATTTATGGTTA+GGG | - | chr5.1:29784286-29784305 | MS.gene074025:CDS | 20.0% |
| !! | ATCTCTTGCTATATATTCAT+TGG | + | chr5.1:29783830-29783849 | None:intergenic | 25.0% |
| !! | TTTTTCACTAACAATTGTCT+CGG | + | chr5.1:29784186-29784205 | None:intergenic | 25.0% |
| AACTTACTTTGTGAGACAAA+AGG | - | chr5.1:29784324-29784343 | MS.gene074025:CDS | 30.0% | |
| ACCACAATAGAAACAAAAAG+AGG | - | chr5.1:29784730-29784749 | MS.gene074025:CDS | 30.0% | |
| ACTTACTTTGTGAGACAAAA+GGG | - | chr5.1:29784325-29784344 | MS.gene074025:CDS | 30.0% | |
| ATAAGTTCTTTGTGTAAACC+GGG | - | chr5.1:29784033-29784052 | MS.gene074025:CDS | 30.0% | |
| CAAGAAGAATTACAAAAGAG+AGG | - | chr5.1:29783772-29783791 | MS.gene074025:CDS | 30.0% | |
| CAATTACAAATTCAGATCAC+TGG | - | chr5.1:29783660-29783679 | MS.gene074025:CDS | 30.0% | |
| GATAAGTTCTTTGTGTAAAC+CGG | - | chr5.1:29784032-29784051 | MS.gene074025:CDS | 30.0% | |
| TCCCTAAAGCGTAAAAATTT+CGG | + | chr5.1:29784093-29784112 | None:intergenic | 30.0% | |
| ! | ACCGAAATTTTTACGCTTTA+GGG | - | chr5.1:29784089-29784108 | MS.gene074025:CDS | 30.0% |
| ! | ATTTTCCTGAATATGAGTCT+TGG | - | chr5.1:29783881-29783900 | MS.gene074025:CDS | 30.0% |
| ! | CTCTCTTTTGTAATTCTTCT+TGG | + | chr5.1:29783774-29783793 | None:intergenic | 30.0% |
| ! | CTTTTCTCATACGTTTGTTT+TGG | + | chr5.1:29783711-29783730 | None:intergenic | 30.0% |
| ! | TTTACTCTTTGAAGAAGCAT+TGG | + | chr5.1:29783860-29783879 | None:intergenic | 30.0% |
| ! | TTTTCCTGAATATGAGTCTT+GGG | - | chr5.1:29783882-29783901 | MS.gene074025:CDS | 30.0% |
| !! | CAATTTTTCGACGAAAGATA+TGG | - | chr5.1:29784765-29784784 | MS.gene074025:CDS | 30.0% |
| !! | GGGTAAGTTTGAAATTTTCA+GGG | - | chr5.1:29783911-29783930 | MS.gene074025:CDS | 30.0% |
| !! | GGTAAGTTTGAAATTTTCAG+GGG | - | chr5.1:29783912-29783931 | MS.gene074025:CDS | 30.0% |
| !!! | TCCTCTTTTTGTTTCTATTG+TGG | + | chr5.1:29784734-29784753 | None:intergenic | 30.0% |
| AACAGACTTCTATACTAGCA+TGG | + | chr5.1:29784152-29784171 | None:intergenic | 35.0% | |
| AAGAATTACAAAAGAGAGGC+TGG | - | chr5.1:29783776-29783795 | MS.gene074025:CDS | 35.0% | |
| AATATGAGTCTTGGGTAAGA+GGG | - | chr5.1:29783890-29783909 | MS.gene074025:CDS | 35.0% | |
| AGAATTACAAAAGAGAGGCT+GGG | - | chr5.1:29783777-29783796 | MS.gene074025:CDS | 35.0% | |
| ATAACAGTCATGAATGGATG+GGG | - | chr5.1:29784694-29784713 | MS.gene074025:CDS | 35.0% | |
| CATAACAGTCATGAATGGAT+GGG | - | chr5.1:29784693-29784712 | MS.gene074025:CDS | 35.0% | |
| CTTACTTTGTGAGACAAAAG+GGG | - | chr5.1:29784326-29784345 | MS.gene074025:CDS | 35.0% | |
| GACTGTTATGCATCCAATTT+GGG | + | chr5.1:29784683-29784702 | None:intergenic | 35.0% | |
| GATGCTATTAATTCTGCGTT+AGG | - | chr5.1:29783934-29783953 | MS.gene074025:CDS | 35.0% | |
| GGAAAAAAAGGACTTCGATT+AGG | + | chr5.1:29784963-29784982 | None:intergenic | 35.0% | |
| GGATCTTAAGTTAAGAGCTA+AGG | - | chr5.1:29784110-29784129 | MS.gene074025:CDS | 35.0% | |
| GTGATTGAAATTCGACTCTT+GGG | + | chr5.1:29784925-29784944 | None:intergenic | 35.0% | |
| TGACTGTTATGCATCCAATT+TGG | + | chr5.1:29784684-29784703 | None:intergenic | 35.0% | |
| TGTGATTGAAATTCGACTCT+TGG | + | chr5.1:29784926-29784945 | None:intergenic | 35.0% | |
| TTCATTGGTATACTTGATGC+TGG | + | chr5.1:29783815-29783834 | None:intergenic | 35.0% | |
| ! | AAAAGTTGGACATTTTGTCG+AGG | + | chr5.1:29784570-29784589 | None:intergenic | 35.0% |
| ! | AAAGTTGGACATTTTGTCGA+GGG | + | chr5.1:29784569-29784588 | None:intergenic | 35.0% |
| ! | AAATGTCCAACTTTTCACGA+TGG | - | chr5.1:29784575-29784594 | MS.gene074025:CDS | 35.0% |
| ! | AATCTTGGTATGATAGTGAG+TGG | - | chr5.1:29784400-29784419 | MS.gene074025:CDS | 35.0% |
| ! | CACCGAAATTTTTACGCTTT+AGG | - | chr5.1:29784088-29784107 | MS.gene074025:CDS | 35.0% |
| !! | GGGGTAAGTTTGAAATTTTC+AGG | - | chr5.1:29783910-29783929 | MS.gene074025:CDS | 35.0% |
| !!! | CTCATACGTTTGTTTTGGAT+TGG | + | chr5.1:29783706-29783725 | None:intergenic | 35.0% |
| AGCAATGTGGGTATCTGAAA+AGG | - | chr5.1:29784056-29784075 | MS.gene074025:CDS | 40.0% | |
| ATATGAGTCTTGGGTAAGAG+GGG | - | chr5.1:29783891-29783910 | MS.gene074025:CDS | 40.0% | |
| CAAACTAGTGATTCAGGAAC+TGG | - | chr5.1:29784888-29784907 | MS.gene074025:CDS | 40.0% | |
| CAAGATTTGTCGATGACTTC+AGG | + | chr5.1:29784387-29784406 | None:intergenic | 40.0% | |
| CTGAAGTCATCGACAAATCT+TGG | - | chr5.1:29784385-29784404 | MS.gene074025:CDS | 40.0% | |
| CTTACCCAAGACTCATATTC+AGG | + | chr5.1:29783889-29783908 | None:intergenic | 40.0% | |
| GAATATGAGTCTTGGGTAAG+AGG | - | chr5.1:29783889-29783908 | MS.gene074025:CDS | 40.0% | |
| GATCACTGGAACACTATAGT+AGG | - | chr5.1:29783674-29783693 | MS.gene074025:CDS | 40.0% | |
| GCATAACAGTCATGAATGGA+TGG | - | chr5.1:29784692-29784711 | MS.gene074025:CDS | 40.0% | |
| GGAGATCAAACTAGTGATTC+AGG | - | chr5.1:29784882-29784901 | MS.gene074025:CDS | 40.0% | |
| GGAGGAGGAAAATAAGTCAA+CGG | + | chr5.1:29784816-29784835 | None:intergenic | 40.0% | |
| GGATGCATAACAGTCATGAA+TGG | - | chr5.1:29784688-29784707 | MS.gene074025:CDS | 40.0% | |
| GTTGCAGTTATGTGATATGC+AGG | - | chr5.1:29784632-29784651 | MS.gene074025:CDS | 40.0% | |
| TTAAGTTAAGAGCTAAGGCG+TGG | - | chr5.1:29784115-29784134 | MS.gene074025:CDS | 40.0% | |
| TTCAATCACAACAGTTTCGC+AGG | - | chr5.1:29784936-29784955 | MS.gene074025:CDS | 40.0% | |
| ! | AAGTTGGACATTTTGTCGAG+GGG | + | chr5.1:29784568-29784587 | None:intergenic | 40.0% |
| ! | AGTGATTCAGGAACTGGTTT+AGG | - | chr5.1:29784894-29784913 | MS.gene074025:CDS | 40.0% |
| CATCAGGACAACTCCCAAAT+TGG | - | chr5.1:29784667-29784686 | MS.gene074025:CDS | 45.0% | |
| CATCCACCATCGTGAAAAGT+TGG | + | chr5.1:29784584-29784603 | None:intergenic | 45.0% | |
| GCACGAGAGAACATGAGTTT+CGG | - | chr5.1:29784607-29784626 | MS.gene074025:CDS | 45.0% | |
| GGAGGAAAATAAGTCAACGG+AGG | + | chr5.1:29784813-29784832 | None:intergenic | 45.0% | |
| GTTTGATCTCCCTCTTGATG+TGG | + | chr5.1:29784873-29784892 | None:intergenic | 45.0% | |
| TCATATGTCTCTGCACTCAG+CGG | + | chr5.1:29784006-29784025 | None:intergenic | 45.0% | |
| TCTGTTTGCACGTCTGATAG+AGG | + | chr5.1:29784477-29784496 | None:intergenic | 45.0% | |
| TTCTTTCTTCCTCCACCAAG+AGG | + | chr5.1:29783616-29783635 | None:intergenic | 45.0% | |
| ! | AGTTGGACATTTTGTCGAGG+GGG | + | chr5.1:29784567-29784586 | None:intergenic | 45.0% |
| ! | ATTTTCTCGACCCAACACTC+CGG | + | chr5.1:29783973-29783992 | None:intergenic | 45.0% |
| ! | CTTGGTATGATAGTGAGTGG+AGG | - | chr5.1:29784403-29784422 | MS.gene074025:CDS | 45.0% |
| ! | TGATAGTGAGTGGAGGATAG+AGG | - | chr5.1:29784410-29784429 | MS.gene074025:CDS | 45.0% |
| ! | TGTCCAACTTTTCACGATGG+TGG | - | chr5.1:29784578-29784597 | MS.gene074025:CDS | 45.0% |
| ACGCAACCACCACATCAAGA+GGG | - | chr5.1:29784861-29784880 | MS.gene074025:CDS | 50.0% | |
| ACGTCTGATAGAGGCGATTC+TGG | + | chr5.1:29784468-29784487 | None:intergenic | 50.0% | |
| GGATAGAGGCCAGTAGTTCA+AGG | - | chr5.1:29784424-29784443 | MS.gene074025:CDS | 50.0% | |
| GTGATATGCAGGCTCGACAT+GGG | - | chr5.1:29784643-29784662 | MS.gene074025:CDS | 50.0% | |
| GTGTAAACCGGGAGCAATGT+GGG | - | chr5.1:29784044-29784063 | MS.gene074025:CDS | 50.0% | |
| TCAGATACCCACATTGCTCC+CGG | + | chr5.1:29784054-29784073 | None:intergenic | 50.0% | |
| TGATCTCCCTCTTGATGTGG+TGG | + | chr5.1:29784870-29784889 | None:intergenic | 50.0% | |
| TGTGATATGCAGGCTCGACA+TGG | - | chr5.1:29784642-29784661 | MS.gene074025:CDS | 50.0% | |
| TGTGTAAACCGGGAGCAATG+TGG | - | chr5.1:29784043-29784062 | MS.gene074025:CDS | 50.0% | |
| TGTTCTGGTGGTTGTGGACA+AGG | + | chr5.1:29784837-29784856 | None:intergenic | 50.0% | |
| ! | ATTCTGGTTGCACGTCTGGT+TGG | + | chr5.1:29784452-29784471 | None:intergenic | 50.0% |
| ! | GTGTCTTGTTCTGGTGGTTG+TGG | + | chr5.1:29784843-29784862 | None:intergenic | 50.0% |
| ! | TTCTGGTTGCACGTCTGGTT+GGG | + | chr5.1:29784451-29784470 | None:intergenic | 50.0% |
| !! | CCACCAAGAGGTACTTTCAG+TGG | + | chr5.1:29783604-29783623 | None:intergenic | 50.0% |
| !! | CCACTGAAAGTACCTCTTGG+TGG | - | chr5.1:29783601-29783620 | MS.gene074025:CDS | 50.0% |
| !! | CTGAAAGTACCTCTTGGTGG+AGG | - | chr5.1:29783604-29783623 | MS.gene074025:CDS | 50.0% |
| !! | GCTCCACTGAAAGTACCTCT+TGG | - | chr5.1:29783598-29783617 | MS.gene074025:CDS | 50.0% |
| CACGCAACCACCACATCAAG+AGG | - | chr5.1:29784860-29784879 | MS.gene074025:CDS | 55.0% | |
| GGGGTATGCGACGAGGAATA+TGG | - | chr5.1:29784345-29784364 | MS.gene074025:CDS | 55.0% | |
| TCTGGTGGTTGTGGACAAGG+AGG | + | chr5.1:29784834-29784853 | None:intergenic | 55.0% | |
| TCTGGTTGCACGTCTGGTTG+GGG | + | chr5.1:29784450-29784469 | None:intergenic | 55.0% | |
| TGGTTGGGGCCTTGAACTAC+TGG | + | chr5.1:29784436-29784455 | None:intergenic | 55.0% | |
| ! | GACAAAAGGGGTATGCGACG+AGG | - | chr5.1:29784338-29784357 | MS.gene074025:CDS | 55.0% |
| ! | GGTGGTTGCGTGTCTTGTTC+TGG | + | chr5.1:29784852-29784871 | None:intergenic | 55.0% |
| ! | GGTTGCGTGTCTTGTTCTGG+TGG | + | chr5.1:29784849-29784868 | None:intergenic | 55.0% |
| !! | AACGGAGGCATCTGCTTTGG+TGG | + | chr5.1:29784798-29784817 | None:intergenic | 55.0% |
| !! | GTCAACGGAGGCATCTGCTT+TGG | + | chr5.1:29784801-29784820 | None:intergenic | 55.0% |
| CAGGCTCGACATGGGTCATC+AGG | - | chr5.1:29784651-29784670 | MS.gene074025:CDS | 60.0% | |
| GGTGGTTGTGGACAAGGAGG+AGG | + | chr5.1:29784831-29784850 | None:intergenic | 60.0% | |
| GTTAGGTTTGACCGCGCCAC+CGG | - | chr5.1:29783951-29783970 | MS.gene074025:CDS | 60.0% | |
| TCAACCTCAACCGACCCAGC+AGG | - | chr5.1:29784539-29784558 | MS.gene074025:CDS | 60.0% | |
| TTCTCGACCCAACACTCCGG+TGG | + | chr5.1:29783970-29783989 | None:intergenic | 60.0% | |
| ! | GGCGATTCTGGTTGCACGTC+TGG | + | chr5.1:29784456-29784475 | None:intergenic | 60.0% |
| TTGTCGAGGGGGAGCCTGCT+GGG | + | chr5.1:29784556-29784575 | None:intergenic | 65.0% | |
| TTTGTCGAGGGGGAGCCTGC+TGG | + | chr5.1:29784557-29784576 | None:intergenic | 65.0% | |
| GACCCAACACTCCGGTGGCG+CGG | + | chr5.1:29783965-29783984 | None:intergenic | 70.0% | |
| GGAGCCTGCTGGGTCGGTTG+AGG | + | chr5.1:29784546-29784565 | None:intergenic | 70.0% | |
| TGACCGCGCCACCGGAGTGT+TGG | - | chr5.1:29783959-29783978 | MS.gene074025:CDS | 70.0% | |
| ! | GACCGCGCCACCGGAGTGTT+GGG | - | chr5.1:29783960-29783979 | MS.gene074025:CDS | 70.0% |
| CGAGGGGGAGCCTGCTGGGT+CGG | + | chr5.1:29784552-29784571 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 29783583 | 29784989 | 29783583 | ID=MS.gene074025 |
| chr5.1 | mRNA | 29783583 | 29784989 | 29783583 | ID=MS.gene074025.t1;Parent=MS.gene074025 |
| chr5.1 | exon | 29783583 | 29784989 | 29783583 | ID=MS.gene074025.t1.exon1;Parent=MS.gene074025.t1 |
| chr5.1 | CDS | 29783583 | 29784989 | 29783583 | ID=cds.MS.gene074025.t1;Parent=MS.gene074025.t1 |
| Gene Sequence |
| Protein sequence |
