AlfalfaGEDB | MS.gene07410

M. sativa cultivar XinJiangDaYe / MS.gene07410

KEGG: K12761
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF03822.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07410.t1	XP_013468758.1	94.7	436	22	1	1	436	1	435	9.40E-225	789.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07410.t1	Q9XIW0	57.1	441	161	9	2	433	6	427	2.4e-128	460.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07410.t1	A0A072VXI4	94.7	436	22	1	1	436	1	435	6.8e-225	789.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene07410	MS.gene035805	PPI
MS.gene07410	MS.gene064542	PPI
MS.gene07410	MS.gene73119	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07410.t1	MTR_1g076370	96.101	436	16	1	1	436	1	435	0.0	858
MS.gene07410.t1	MTR_1g040875	72.104	423	104	5	16	437	20	429	0.0	591
MS.gene07410.t1	MTR_4g029020	44.619	446	205	12	15	434	7	436	5.49e-119	355
MS.gene07410.t1	MTR_7g072575	44.222	450	206	11	11	430	3	437	9.98e-115	344
MS.gene07410.t1	MTR_4g131060	43.736	439	212	11	6	426	4	425	2.23e-111	335
MS.gene07410.t1	MTR_5g088350	44.651	430	198	12	5	411	1	413	2.42e-111	335
MS.gene07410.t1	MTR_2g049790	44.419	439	199	16	18	427	21	443	3.44e-110	332
MS.gene07410.t1	MTR_5g088350	44.365	417	194	10	5	399	1	401	1.55e-109	330
MS.gene07410.t1	MTR_3g466480	44.828	406	196	10	8	403	9	396	2.35e-109	330
MS.gene07410.t1	MTR_2g016340	42.664	443	208	12	16	427	8	435	6.76e-109	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07410.t1	AT3G23000	56.720	439	166	7	2	433	6	427	3.52e-165	471
MS.gene07410.t1	AT4G14580	57.727	440	164	10	1	432	1	426	1.11e-160	460
MS.gene07410.t1	AT5G01810	44.780	431	208	9	15	431	7	421	3.96e-117	349
MS.gene07410.t1	AT5G01810	44.780	431	208	9	15	431	7	421	3.96e-117	349
MS.gene07410.t1	AT1G30270	43.836	438	205	12	17	427	28	451	3.22e-114	343
MS.gene07410.t1	AT1G30270	43.836	438	205	12	17	427	28	451	5.59e-114	343
MS.gene07410.t1	AT5G10930	44.124	451	209	13	15	437	7	442	2.35e-112	338
MS.gene07410.t1	AT5G21326	42.539	449	218	12	11	436	4	435	2.52e-110	332
MS.gene07410.t1	AT1G01140	41.722	453	225	11	6	433	5	443	6.35e-110	332
MS.gene07410.t1	AT2G26980	43.537	441	209	12	17	434	21	444	7.88e-110	331

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Find 136 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGAAGGAAGTTGGA+GGG	0.563040	1.2:+64125091	MS.gene07410:CDS
AAAGCCGATGCATGGTCGTG+TGG	0.640458	1.2:+64124634	MS.gene07410:CDS
AAAGGTGAAGGAAGTTGGAG+GGG	0.559673	1.2:+64125092	MS.gene07410:CDS
AAGAGCAGAGAGACCGAAAT+CGG	0.472843	1.2:-64124512	None:intergenic
AAGTCCACACGACCATGCAT+CGG	0.622328	1.2:-64124638	None:intergenic
AATATCTATGTCTTCGGGTT+TGG	0.307226	1.2:+64124957	MS.gene07410:CDS
AATCTCCTCCTCGACGCCGA+TGG	0.529473	1.2:+64124475	MS.gene07410:CDS
AATCTTAAGGTTTCCGATTT+CGG	0.280841	1.2:+64124499	MS.gene07410:CDS
AATTGGATTGGTGAAAGGGA+AGG	0.688207	1.2:+64125152	MS.gene07410:CDS
ACACGACCATGCATCGGCTT+TGG	0.413056	1.2:-64124632	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTAAGGTTTCCGATTT+CGG	+	chr1.2:64124499-64124518	MS.gene07410:CDS	30.0%
GGAATATTCAAATCGTCAAA+CGG	-	chr1.2:64124694-64124713	None:intergenic	30.0%
GTTTAAGAAATCGTTGAAAC+CGG	+	chr1.2:64124855-64124874	MS.gene07410:CDS	30.0%
GTTTGACGATTTGAATATTC+CGG	+	chr1.2:64124693-64124712	MS.gene07410:CDS	30.0%
GAAGAATAGTGCAATTGGAT+TGG	+	chr1.2:64125140-64125159	MS.gene07410:CDS	35.0%
GGAGTTTGAGGATAATCATT+GGG	+	chr1.2:64125254-64125273	MS.gene07410:CDS	35.0%
GGTATGATTATGGAAAGGAA+GGG	+	chr1.2:64124905-64124924	MS.gene07410:CDS	35.0%
GTTTACTTCTAGTGCAAAGA+TGG	+	chr1.2:64125056-64125075	MS.gene07410:CDS	35.0%
TAGGTTACTTGATCCAAATC+CGG	+	chr1.2:64124792-64124811	MS.gene07410:CDS	35.0%
TCGATTTCACGTATTATACG+AGG	-	chr1.2:64124220-64124239	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	64124028	64125341	64124028	ID=MS.gene07410
chr1.2	mRNA	64124028	64125341	64124028	ID=MS.gene07410.t1;Parent=MS.gene07410
chr1.2	exon	64124028	64125341	64124028	ID=MS.gene07410.t1.exon1;Parent=MS.gene07410.t1
chr1.2	CDS	64124028	64125341	64124028	ID=cds.MS.gene07410.t1;Parent=MS.gene07410.t1

Gene Sequence

>MS.gene07410

ATGGAACCGCCATTACAACAACCACCAACCCCCCGCCCTCCCACCATTCTCGGAAAATACCAGCTAACCCGCCTCCTCGGCCGCGGCAGCTTCGCCAAAGTCTACAAAGCTCATTCCCTCCACGACAACGCTACCACCGTCGCCGTCAAAATCATCGACAAGTCAAAAACCGTTGATGCCGCCATGGAGCCTCGTATAATACGTGAAATCGACGCCATGCGCCGTCTTCATCACCACCCTAACATCCTCAAAATCCACGAAGTTATGGCTACAAAAACCAAAATTCATCTTATCGTTGAATTCGCCGCCGGTGGTGAGCTTTTCTCCGCTCTCTCCCGTCGTGGAAGATTCTCCGAATCCACAGCTCGTTTCTACTTTCAACAGCTTGTCTCTGCGTTACGTTTCTGCCACCGTAACGGCGTTGCTCACCGTGATCTCAAACCGCAGAATCTCCTCCTCGACGCCGATGGGAATCTTAAGGTTTCCGATTTCGGTCTCTCTGCTCTTCCCGAACATCTAAAAGACGGACTACTCCACACTGCTTGTGGTACTCCGGCGTACACTGCGCCGGAGATTCTCCGGCGCAGTGGCGGTTATGACGGATCCAAAGCCGATGCATGGTCGTGTGGACTTATACTCTACGTACTTCTCGCCGGTTATCTTCCGTTTGACGATTTGAATATTCCGGCGATGTGTAAGAAGATTTCCCGGCGAGATTACCGGTTTCCGGATTGGGTTTCGAAACGAGCGCGTATTGTGATATATAGGTTACTTGATCCAAATCCGGAAACACGAATGAGTTTGGAGGGTTTATTTGCGAACGAGTGGTTTAAGAAATCGTTGAAACCGGAACCTGAACCGGAAAAGAGTGTTTTCGGGTATGATTATGGAAAGGAAGGGAAAGTTTTAGGTTTAAATGCGTTTCATATAATATCTATGTCTTCGGGTTTGGATTTGAGTGGTTTATTTGAAACGACGTCGTCTTCTCAAGGTGGTAATAATAATAATAATACATGGAGGGAGAAGAGGTTTACTTCTAGTGCAAAGATGGAAGTGGTGGAGGAAAAGGTGAAGGAAGTTGGAGGGGTTTTGGGGTTTAAAGTTGAGGTTGGGAAGAATAGTGCAATTGGATTGGTGAAAGGGAAGGTGAGTTTGGTAGTTGAAGTTTTTGAGATTGTGCCTTGTCAACTTGTTTTGGTGGCCGTTAAGGTGGTAGAGGGTGGTTTGGAGTTTGAGGATAATCATTGGGAGGATTGGAAAGTTGGTTTGCAAGATCTTGTGATTTCATGGCACAATAATCAAGAGTCTTCATGA

Protein sequence

>MS.gene07410.t1

MEPPLQQPPTPRPPTILGKYQLTRLLGRGSFAKVYKAHSLHDNATTVAVKIIDKSKTVDAAMEPRIIREIDAMRRLHHHPNILKIHEVMATKTKIHLIVEFAAGGELFSALSRRGRFSESTARFYFQQLVSALRFCHRNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEHLKDGLLHTACGTPAYTAPEILRRSGGYDGSKADAWSCGLILYVLLAGYLPFDDLNIPAMCKKISRRDYRFPDWVSKRARIVIYRLLDPNPETRMSLEGLFANEWFKKSLKPEPEPEKSVFGYDYGKEGKVLGLNAFHIISMSSGLDLSGLFETTSSSQGGNNNNNTWREKRFTSSAKMEVVEEKVKEVGGVLGFKVEVGKNSAIGLVKGKVSLVVEVFEIVPCQLVLVAVKVVEGGLEFEDNHWEDWKVGLQDLVISWHNNQESS